1
|
Offret C, Gauthier O, Despréaux G, Bidault A, Corporeau C, Miner P, Petton B, Pernet F, Fabioux C, Paillard C, Le Blay G. Microbiota of the Digestive Glands and Extrapallial Fluids of Clams Evolve Differently Over Time Depending on the Intertidal Position. Microb Ecol 2023; 85:288-297. [PMID: 35066615 DOI: 10.1007/s00248-022-01959-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/15/2021] [Accepted: 01/04/2022] [Indexed: 02/08/2023]
Abstract
The Manila clam (Ruditapes philippinarum) is the second most exploited bivalve in the world but remains threatened by diseases and global changes. Their associated microbiota play a key role in their fitness and acclimation capacities. This study aimed at better understanding the behavior of clam digestive glands and extrapallial fluids microbiota at small, but contrasting spatial and temporal scales. Results showed that environmental variations impacted clam microbiota differently according to the considered tissue. Each clam tissue presented its own microbiota and showed different dynamics according to the intertidal position and sampling period. Extrapallial fluids microbiota was modified more rapidly than digestive glands microbiota, for clams placed on the upper and lower intertidal position, respectively. Clam tissues could be considered as different microhabitats for bacteria as they presented different responses to small-scale temporal and spatial variabilities in natural conditions. These differences underlined a more stringent environmental filter capacity of the digestive glands.
Collapse
Affiliation(s)
- Clément Offret
- Univ Brest, CNRS, IRD, Ifremer, LEMAR, F-29280, Plouzané, France
| | - Olivier Gauthier
- Univ Brest, CNRS, IRD, Ifremer, LEMAR, F-29280, Plouzané, France
| | | | - Adeline Bidault
- Univ Brest, CNRS, IRD, Ifremer, LEMAR, F-29280, Plouzané, France
| | | | - Philippe Miner
- Ifremer, Univ Brest, CNRS, IRD, LEMAR, Plouzané, 29280, Brest, France
| | - Bruno Petton
- Ifremer, Univ Brest, CNRS, IRD, LEMAR, Plouzané, 29280, Brest, France
| | - Fabrice Pernet
- Ifremer, Univ Brest, CNRS, IRD, LEMAR, Plouzané, 29280, Brest, France
| | - Caroline Fabioux
- Univ Brest, CNRS, IRD, Ifremer, LEMAR, F-29280, Plouzané, France
| | | | | |
Collapse
|
2
|
Paillard C, Gueguen Y, Wegner KM, Bass D, Pallavicini A, Vezzulli L, Arzul I. Recent advances in bivalve-microbiota interactions for disease prevention in aquaculture. Curr Opin Biotechnol 2022; 73:225-232. [PMID: 34571318 DOI: 10.1016/j.copbio.2021.07.026] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2021] [Revised: 07/20/2021] [Accepted: 07/26/2021] [Indexed: 02/08/2023]
Abstract
In bivalves, no clear-cut functional role of microbiota has yet been identified, although many publications suggest that they could be involved in nutrition or immunity of their host. In the context of climate change, integrative approaches at the crossroads of disciplines have been developed to explore the environment-host-pathogen-microbiota system. Here, we attempt to synthesize work on (1) the current methodologies to analyse bivalve microbiota, (2) the comparison of microbiota between species, between host compartments and their surrounding habitat, (3) how the bivalve microbiota are governed by environmental factors and host genetics and (4) how host-associated microorganisms act as a buffer against pathogens and/or promote recovery, and could thereby play a role in the prevention of disease or mortalities.
Collapse
Affiliation(s)
| | - Yannick Gueguen
- IHPE, Univ Montpellier, CNRS, Ifremer, UPVD, Montpellier, France.
| | - K Mathias Wegner
- Alfred Wegener Institute - Helmholtz Centre for Polar and Marine Research, Coastal Ecology, Waddensea Station Sylt, D-25992 List, Germany
| | - David Bass
- International Centre of Excellence for Aquatic Animal Health, Centre for Environment Fisheries and Aquaculture Science (Cefas), Weymouth Laboratory, Weymouth, DT4 8UB Dorset, UK; Centre for Sustainable Aquaculture Futures, University of Exeter, College of Life and Environmental Sciences, University of Exeter, EX4 4QD Exeter, UK; Department of Life Sciences, The Natural History Museum, Cromwell Road, SW7 5BD London, UK
| | - Alberto Pallavicini
- Department of Life Sciences, University of Trieste, Via Licio Giorgeri 5, 34126 Trieste, Italy; National Institute of Oceanography and Applied Geophysics, via Piccard 54, 34151 Trieste, Italy
| | - Luigi Vezzulli
- Department of Earth, Environmental and Life Sciences (DISTAV), University of Genoa, Corso Europa 26, 16132 Genoa, Italy
| | - Isabelle Arzul
- Ifremer, RBE-SG2M-LGPMM, Station de La Tremblade, Avenue de Mus de Loup, F-17390 La Tremblade, France.
| |
Collapse
|
3
|
Morot A, El Fekih S, Bidault A, Le Ferrand A, Jouault A, Kavousi J, Bazire A, Pichereau V, Dufour A, Paillard C, Delavat F. Virulence of Vibrio harveyi ORM4 towards the European abalone Haliotis tuberculata involves both quorum sensing and a type III secretion system. Environ Microbiol 2021; 23:5273-5288. [PMID: 33989448 DOI: 10.1111/1462-2920.15592] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2021] [Revised: 04/15/2021] [Accepted: 05/08/2021] [Indexed: 02/05/2023]
Abstract
Environmental Vibrio strains represent a major threat in aquaculture, but the understanding of their virulence mechanisms heavily relies on the transposition of knowledge from human-pathogen vibrios. Here, the genetic bases of the virulence of Vibrio harveyi ORM4 towards the European abalone Haliotis tuberculata were characterized. We demonstrated that luxO, encoding a major regulator of the quorum sensing system, is crucial for the virulence of this strain, and that its deletion leads to a decrease in swimming motility, biofilm formation, and exopolysaccharide production. Furthermore, the biofilm formation by V. harveyi ORM4 was increased by abalone serum, which required LuxO. The absence of LuxO in V. harveyi ORM4 yielded opposite phenotypes compared with other Vibrio species including V. campbellii (still frequently named V. harveyi). In addition, we report a full type III secretion system (T3SS) gene cluster in the V. harveyi ORM4 genome. LuxO was shown to negatively regulate the promoter activity of exsA, encoding the major regulator of the T3SS genes, and the deletion of exsA abolished the virulence of V. harveyi ORM4. These results unveil virulence mechanisms set up by this environmentally important bacterial pathogen and pave the way for a better molecular understanding of the regulation of its pathogenicity.
Collapse
Affiliation(s)
- Amandine Morot
- Univ Brest, CNRS, IRD, Ifremer, LEMAR, Plouzané, France
- Université de Bretagne-Sud, EA 3884, LBCM, IUEM, Lorient, France
| | | | | | | | - Albane Jouault
- Université de Bretagne-Sud, EA 3884, LBCM, IUEM, Lorient, France
| | - Javid Kavousi
- Univ Brest, CNRS, IRD, Ifremer, LEMAR, Plouzané, France
| | - Alexis Bazire
- Université de Bretagne-Sud, EA 3884, LBCM, IUEM, Lorient, France
| | | | - Alain Dufour
- Université de Bretagne-Sud, EA 3884, LBCM, IUEM, Lorient, France
| | | | - François Delavat
- Univ Brest, CNRS, IRD, Ifremer, LEMAR, Plouzané, France
- UMR CNRS 6286 UFIP, University of Nantes, Nantes, France
| |
Collapse
|
4
|
Moussa M, Cauvin E, Le Piouffle A, Lucas O, Bidault A, Paillard C, Benoit F, Thuillier B, Treilles M, Travers MA, Garcia C. A MALDI-TOF MS database for fast identification of Vibrio spp. potentially pathogenic to marine mollusks. Appl Microbiol Biotechnol 2021; 105:2527-2539. [PMID: 33590268 PMCID: PMC7954726 DOI: 10.1007/s00253-021-11141-0] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2020] [Revised: 01/15/2021] [Accepted: 01/25/2021] [Indexed: 02/05/2023]
Abstract
In mollusk aquaculture, a large number of Vibrio species are considered major pathogens. Conventional methods based on DNA amplification and sequencing used to accurately identify Vibrio species are unsuitable for monitoring programs because they are time-consuming and expensive. The aim of this study was, therefore, to develop the MALDI-TOF MS method in order to establish a rapid identification technique for a large panel of Vibrio species. We created the EnviBase containing 120 main spectra projections (MSP) of the Vibrio species that are potentially responsible for mollusk diseases, comprising 25 species: V. aestuarianus, V. cortegadensis, V. tapetis and species belonging to the Coralliilyticus, Harveyi, Mediterranei, and Orientalis clades. Each MSP was constructed by the merger of raw spectra obtained from three different media and generated by three collaborating laboratories to increase the diversity of the conditions and thus obtain a good technique robustness. Perfect discrimination was obtained with all of the MSP created for the Vibrio species and even for very closely related species as V. europaeus and V. bivalvicida. The new EnviBase library was validated through a blind test on 100 Vibrio strains performed by our three collaborators who used the direct transfer and protein extraction methods. The majority of the Vibrio strains were successfully identified with the newly created EnviBase by the three laboratories for both protocol methods. This study documents the first development of a freely accessible database exclusively devoted to Vibrio found in marine environments, taking into account the high diversity of this genus. KEY POINTS: • Development of a MALDI-TOF MS database to quickly affiliate Vibrio species. • Increase of the reactivity when faced with Vibrio associated with mollusk diseases. • Validation of MALDI-TOF MS as routine diagnostic tool.
Collapse
Affiliation(s)
- M Moussa
- Ifremer, SG2M-LGPMM, Laboratoire de Génétique et Pathologie des Mollusques Marins, F-17390, La Tremblade, France
| | - E Cauvin
- Labeo-Manche, 1352 avenue de Paris, 50000, Saint-Lô, France
| | - A Le Piouffle
- Labocea, Avenue de la Plage des Gueux, 29330, Quimper, France
| | - O Lucas
- Qualyse, ZI Montplaisir, 79220, Champdeniers Saint-Denis, France
| | - A Bidault
- Univ Brest, CNRS, IRD, Ifremer, UMR6539 LEMAR, F-29280, Plouzané, France
| | - C Paillard
- Univ Brest, CNRS, IRD, Ifremer, UMR6539 LEMAR, F-29280, Plouzané, France
| | - F Benoit
- Labeo-Manche, 1352 avenue de Paris, 50000, Saint-Lô, France
| | - B Thuillier
- Labocea, Avenue de la Plage des Gueux, 29330, Quimper, France
| | - M Treilles
- Qualyse, ZI Montplaisir, 79220, Champdeniers Saint-Denis, France
| | - M A Travers
- Ifremer, SG2M-LGPMM, Laboratoire de Génétique et Pathologie des Mollusques Marins, F-17390, La Tremblade, France
- IHPE, Univ. Montpellier, CNRS, Ifremer, Univ. Perpignan Via Domitia, F-34090, Montpellier, France
| | - Céline Garcia
- Ifremer, SG2M-LGPMM, Laboratoire de Génétique et Pathologie des Mollusques Marins, F-17390, La Tremblade, France.
| |
Collapse
|
5
|
Rahmani A, Delavat F, Lambert C, Le Goic N, Dabas E, Paillard C, Pichereau V. Implication of the Type IV Secretion System in the Pathogenicity of Vibrio tapetis, the Etiological Agent of Brown Ring Disease Affecting the Manila Clam Ruditapes philippinarum. Front Cell Infect Microbiol 2021; 11:634427. [PMID: 33996621 PMCID: PMC8116749 DOI: 10.3389/fcimb.2021.634427] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2020] [Accepted: 03/23/2021] [Indexed: 02/05/2023] Open
Abstract
Vibrio tapetis is a Gram-negative bacterium that causes infections of mollusk bivalves and fish. The Brown Ring Disease (BRD) is an infection caused by V. tapetis that primarily affects the Manila clam Ruditapes philippinarum. Recent studies have shown that a type IV secretion system (T4SS) gene cluster is exclusively found in strains of V. tapetis pathogenic to clams. However, whether the T4SS is implicated or not during the infection process remains unknown. The aim of this study was to create and characterize a V. tapetis T4SS null mutant, obtained by a near-complete deletion of the virB4 gene, in order to determine the role of T4SS in the development of BRD. This study demonstrated that the T4SS is neither responsible for the loss of hemocyte adhesion capacities, nor for the decrease of the lysosomal activity during BRD. Nevertheless, we observed a 50% decrease of the BRD prevalence and a decrease of mortality dynamics with the ΔvirB4 mutant. This work demonstrates that the T4SS of V. tapetis plays an important role in the development of BRD in the Manila clam.
Collapse
Affiliation(s)
- Alexandra Rahmani
- Univ Brest, CNRS, IRD, Ifremer, UMR 6539 LEMAR, Plouzane, France
- *Correspondence: Vianney Pichereau, ; Alexandra Rahmani, ; Christine Paillard,
| | - François Delavat
- Univ Brest, CNRS, IRD, Ifremer, UMR 6539 LEMAR, Plouzane, France
- UMR CNRS 6286 UFIP, University of Nantes, Nantes, France
| | | | - Nelly Le Goic
- Univ Brest, CNRS, IRD, Ifremer, UMR 6539 LEMAR, Plouzane, France
| | - Eric Dabas
- Univ Brest, CNRS, IRD, Ifremer, UMR 6539 LEMAR, Plouzane, France
| | - Christine Paillard
- Univ Brest, CNRS, IRD, Ifremer, UMR 6539 LEMAR, Plouzane, France
- *Correspondence: Vianney Pichereau, ; Alexandra Rahmani, ; Christine Paillard,
| | - Vianney Pichereau
- Univ Brest, CNRS, IRD, Ifremer, UMR 6539 LEMAR, Plouzane, France
- *Correspondence: Vianney Pichereau, ; Alexandra Rahmani, ; Christine Paillard,
| |
Collapse
|
6
|
Rahmani A, Vercauteren M, Vranckx K, Boyen F, Bidault A, Pichereau V, Decostere A, Paillard C, Chiers K. MALDI-TOF MS as a promising tool to assess potential virulence of Vibrio tapetis isolates. Aquaculture 2021. [DOI: 10.1016/j.aquaculture.2020.735729] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
|
7
|
Offret C, Paulino S, Gauthier O, Château K, Bidault A, Corporeau C, Miner P, Petton B, Pernet F, Fabioux C, Paillard C, Blay GL. The marine intertidal zone shapes oyster and clam digestive bacterial microbiota. FEMS Microbiol Ecol 2020; 96:5827529. [PMID: 32353873 DOI: 10.1093/femsec/fiaa078] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2019] [Accepted: 04/29/2020] [Indexed: 02/05/2023] Open
Abstract
Digestive microbiota provide a wide range of beneficial effects on host physiology and are therefore likely to play a key role in marine intertidal bivalve ability to acclimatize to the intertidal zone. This study investigated the effect of intertidal levels on the digestive bacterial microbiota of oysters (Crassostrea gigas) and clams (Ruditapes philippinarum), two bivalves with different ecological niches. Based on 16S rRNA region sequencing, digestive glands, seawater and sediments harbored specific bacterial communities, dominated by operational taxonomic units assigned to the Mycoplasmatales,Desulfobacterales and Rhodobacterales orders, respectively. Field implantation modified digestive bacterial microbiota of both bivalve species according to their intertidal position. Rhodospirillales and Legionellales abundances increased in oysters and clams from the low intertidal level, respectively. After a 14-day depuration process, these effects were still observed, especially for clams, while digestive bacterial microbiota of oysters were subjected to more short-term environmental changes. Nevertheless, 3.5 months stay on an intertidal zone was enough to leave an environmental footprint on the digestive bacterial microbiota, suggesting the existence of autochthonous bivalve bacteria. When comparing clams from the three intertidal levels, 20% of the bacterial assemblage was shared among the levels and it was dominated by an operational taxonomic unit affiliated to the Mycoplasmataceae and Spirochaetaceae families.
Collapse
Affiliation(s)
- Clément Offret
- Univ Brest, CNRS, IRD, Ifremer, LEMAR, F-29280 Plouzané, France
| | - Sauvann Paulino
- Univ Brest, CNRS, IRD, Ifremer, LEMAR, F-29280 Plouzané, France
| | | | - Kevin Château
- Univ Brest, CNRS, IRD, Ifremer, LEMAR, F-29280 Plouzané, France
| | - Adeline Bidault
- Univ Brest, CNRS, IRD, Ifremer, LEMAR, F-29280 Plouzané, France
| | | | - Philippe Miner
- Ifremer, Univ Brest, CNRS, IRD, LEMAR, F-29280 Plouzané, France
| | - Bruno Petton
- Ifremer, Univ Brest, CNRS, IRD, LEMAR, F-29280 Plouzané, France
| | - Fabrice Pernet
- Ifremer, Univ Brest, CNRS, IRD, LEMAR, F-29280 Plouzané, France
| | | | | | | |
Collapse
|
8
|
Rahmani A, Mathien C, Bidault A, Le Goïc N, Paillard C, Pichereau V. External pH modulation during the growth of Vibrio tapetis, the aetiological agent of brown ring disease. J Appl Microbiol 2020; 129:3-16. [PMID: 32395854 DOI: 10.1111/jam.14699] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2020] [Revised: 05/04/2020] [Accepted: 05/04/2020] [Indexed: 02/05/2023]
Abstract
AIMS Brown ring disease (BRD) is an infection of the Manila clam Ruditapes philippinarum due to the pathogen Vibrio tapetis. During BRD, clams are facing immunodepression and shell biomineralization alteration. In this paper, we studied the role of pH on the growth of the pathogen and formulated hypothesis on the establishment of BRD by V. tapetis. METHODS AND RESULTS In this study, we monitored the evolution of pH during the growth of V. tapetis in a range of pH and temperatures. We also measured the pH of Manila clam haemolymph and extrapallial fluids (EPFs) during infection by V. tapetis. We highlighted that V. tapetis modulates the external pH during its growth, to a value of 7·70. During the development of BRD, V. tapetis also influences EPFs and haemolymph pH in vitro in the first hours of exposure and in vivo after 3 days of infection. CONCLUSIONS Our experiments have shown a close interaction between V. tapetis CECT4600, a pathogen of Manila clam that induces BRD, and the pH of different compartments of the animals during infection. These results indicate that the bacterium, through a direct mechanism or as a consequence of physiological changes encountered in the animal during infection, is able to interfere with the pH of Manila clam fluids. This pH modification might promote the infection process or at least create an imbalance within the animal that would favour its persistence. This last hypothesis should be tested in future experiment. SIGNIFICANCE AND IMPACT OF THE STUDY This study is the first observation of pH modifications in the context of BRD and might orient future research on the fine mechanisms of pH modulation associated with BRD.
Collapse
Affiliation(s)
- A Rahmani
- Univ Brest, CNRS, IRD, Ifremer, UMR 6539 LEMAR, Plouzané, France
| | - C Mathien
- Univ Brest, CNRS, IRD, Ifremer, UMR 6539 LEMAR, Plouzané, France
| | - A Bidault
- Univ Brest, CNRS, IRD, Ifremer, UMR 6539 LEMAR, Plouzané, France
| | - N Le Goïc
- Univ Brest, CNRS, IRD, Ifremer, UMR 6539 LEMAR, Plouzané, France
| | - C Paillard
- Univ Brest, CNRS, IRD, Ifremer, UMR 6539 LEMAR, Plouzané, France
| | - V Pichereau
- Univ Brest, CNRS, IRD, Ifremer, UMR 6539 LEMAR, Plouzané, France
| |
Collapse
|
9
|
Lemonnier C, Perennou M, Eveillard D, Fernandez-Guerra A, Leynaert A, Marié L, Morrison HG, Memery L, Paillard C, Maignien L. Linking Spatial and Temporal Dynamic of Bacterioplankton Communities With Ecological Strategies Across a Coastal Frontal Area. Front Mar Sci 2020. [DOI: 10.3389/fmars.2020.00376] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
|
10
|
Smits M, Artigaud S, Bernay B, Pichereau V, Bargelloni L, Paillard C. A proteomic study of resistance to Brown Ring disease in the Manila clam, Ruditapes philippinarum. Fish Shellfish Immunol 2020; 99:641-653. [PMID: 32044464 DOI: 10.1016/j.fsi.2020.02.002] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/28/2019] [Revised: 01/24/2020] [Accepted: 02/01/2020] [Indexed: 02/08/2023]
Abstract
Marine mollusk aquaculture has more than doubled over the past twenty years, accounting for over 15% of total aquaculture production in 2016. Infectious disease is one of the main limiting factors to the development of mollusk aquaculture, and the difficulties inherent to combating pathogens through antibiotic therapies or disinfection have led to extensive research on host defense mechanisms and host-pathogen relationships. It has become increasingly clear that characterizing the functional profiles of response to a disease is an essential step in understanding resistance mechanisms and moving towards more effective disease control. The Manila clam, Ruditapes philippinarum, is a main cultured bivalve species of economic importance which is affected by Brown Ring disease (BRD), an infection induced by the bacterium Vibrio tapetis. In this study, juvenile Manila clams were subjected to a 28-day controlled challenge with Vibrio tapetis, and visual and molecular diagnoses were carried out to distinguish two extreme phenotypes within the experimental clams: uninfected ("RES", resistant) and infected ("DIS", diseased) post-challenge. Total protein extractions were carried out for resistant and diseased clams, and proteins were identified using LC-MS/MS. Protein sequences were matched against a reference transcriptome of the Manila clam, and protein intensities based on label-free quantification were compared to reveal 49 significantly accumulated proteins in resistant and diseased clams. Proteins with known roles in pathogen recognition, lysosome trafficking, and various aspects of the energy metabolism were more abundant in diseased clams, whereas those with roles in redox homeostasis and protein recycling were more abundant in resistant clams. Overall, the comparison of the proteomic profiles of resistant and diseased clams after a month-long controlled challenge to induce the onset of Brown Ring disease suggests that redox homeostasis and maintenance of protein structure by chaperone proteins may play important and interrelated roles in resistance to infection by Vibrio tapetis in the Manila clam.
Collapse
Affiliation(s)
- M Smits
- Université de Brest, CNRS, IRD, Ifremer, UMR 6539 LEMAR, F-29280, Plouzané, France; Department of Comparative Biomedicine and Food Science, University of Padova, Agripolis Campus, Viale dell'Universita', 16, 35020, Legnaro (PD), Italy.
| | - S Artigaud
- Université de Brest, CNRS, IRD, Ifremer, UMR 6539 LEMAR, F-29280, Plouzané, France.
| | - B Bernay
- Plateforme Proteogen, SFR ICORE 4206, Université de Caen Basse-Normandie, Esplanade de la paix, 14032, Caen cedex, France.
| | - V Pichereau
- Université de Brest, CNRS, IRD, Ifremer, UMR 6539 LEMAR, F-29280, Plouzané, France.
| | - L Bargelloni
- Department of Comparative Biomedicine and Food Science, University of Padova, Agripolis Campus, Viale dell'Universita', 16, 35020, Legnaro (PD), Italy.
| | - C Paillard
- Université de Brest, CNRS, IRD, Ifremer, UMR 6539 LEMAR, F-29280, Plouzané, France.
| |
Collapse
|
11
|
Smits M, Enez F, Ferraresso S, Dalla Rovere G, Vetois E, Auvray JF, Genestout L, Mahla R, Arcangeli G, Paillard C, Haffray P, Bargelloni L. Potential for Genetic Improvement of Resistance to Perkinsus olseni in the Manila Clam, Ruditapes philippinarum, Using DNA Parentage Assignment and Mass Spawning. Front Vet Sci 2020; 7:579840. [PMID: 33195590 PMCID: PMC7649815 DOI: 10.3389/fvets.2020.579840] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2020] [Accepted: 09/08/2020] [Indexed: 02/05/2023] Open
Abstract
The Manila clam Ruditapes philippinarum, a major cultured shellfish species, is threatened by infection with the microparasite Perkinsus olseni, whose prevalence increases with high water temperatures. Under the current trend of climate change, the already severe effects of this parasitic infection might rapidly increase the frequency of mass mortality events. Treating infectious diseases in bivalves is notoriously problematic, therefore selective breeding for resistance represents a key strategy for mitigating the negative impact of pathogens. A crucial step in initiating selective breeding is the estimation of genetic parameters for traits of interest, which relies on the ability to record parentage and accurate phenotypes in a large number of individuals. Here, to estimate the heritability of resistance against P. olseni, a field experiment mirroring conditions in industrial clam production was set up, a genomic tool was developed for parentage assignment, and parasite load was determined through quantitative PCR. A mixed-family cohort of potentially 1,479 clam families was produced in a hatchery by mass spawning of 53 dams and 57 sires. The progenies were seeded in a commercial clam production area in the Venice lagoon, Italy, where high prevalence of P. olseni had previously been reported. Growth and parasite load were monitored every month and, after 1 year, more than 1,000 individuals were collected for DNA samples and phenotype recording. A pooled sequencing approach was carried out using DNA samples from the hatchery broodstock and from a Venice lagoon clam population, providing candidate markers used to develop a 245-SNP panel. Parentage assignment for 246 F1 individuals showed sire and dam representation were high (75 and 85%, respectively), indicating a very limited risk of inbreeding. Moderate heritability (0.23 ± 0.11-0.35 ± 0.13) was estimated for growth traits (shell length, shell weight, total weight), while parasite load showed high heritability, estimated at 0.51 ± 0.20. No significant genetic correlations were found between growth-associated traits and parasite load. Overall, the preliminary results provided by this study show high potential for selecting clams resistant to parasite load. Breeding for resistance may help limit the negative effects of climate change on clam production, as the prevalence of the parasite is predicted to increase under a future scenario of higher temperatures. Finally, the limited genetic correlation between resistance and growth suggests that breeding programs could incorporate dual selection without negative interactions.
Collapse
Affiliation(s)
- Morgan Smits
- Department of Comparative Biomedicine and Food Science (BCA), University of Padova, Legnaro, Italy
- Morgan Smits
| | - Florian Enez
- Syndicat des Sélectionneurs Avicoles et Aquacoles Français (SYSAAF), Laboratoire de Physiologie et Génomique des Poissons (LPGP), Campus de Beaulieu, Rennes, France
| | - Serena Ferraresso
- Department of Comparative Biomedicine and Food Science (BCA), University of Padova, Legnaro, Italy
| | - Giulia Dalla Rovere
- Department of Comparative Biomedicine and Food Science (BCA), University of Padova, Legnaro, Italy
| | - Emilie Vetois
- Société Atlantique de Mariculture (SATMAR), Gatteville-Phare, France
| | | | | | - Rachid Mahla
- Labogena, Domaine de Vilvert, Jouy en Josas, France
| | - Giuseppe Arcangeli
- National Reference Centre for Fish, Crustacean and Mollusc Pathology, Italian Health Authority and Research Organization for Animal Health and Food Safety (IZSVe), Legnaro, Italy
| | - Christine Paillard
- Laboratory of Marine Environmental Sciences (LEMAR), Institut Universitaire Européen de la Mer, Plouzané, France
| | - Pierrick Haffray
- Syndicat des Sélectionneurs Avicoles et Aquacoles Français (SYSAAF), Laboratoire de Physiologie et Génomique des Poissons (LPGP), Campus de Beaulieu, Rennes, France
| | - Luca Bargelloni
- Department of Comparative Biomedicine and Food Science (BCA), University of Padova, Legnaro, Italy
- *Correspondence: Luca Bargelloni
| |
Collapse
|
12
|
Lasa A, di Cesare A, Tassistro G, Borello A, Gualdi S, Furones D, Carrasco N, Cheslett D, Brechon A, Paillard C, Bidault A, Pernet F, Canesi L, Edomi P, Pallavicini A, Pruzzo C, Vezzulli L. Dynamics of the Pacific oyster pathobiota during mortality episodes in Europe assessed by 16S rRNA gene profiling and a new target enrichment next-generation sequencing strategy. Environ Microbiol 2019; 21:4548-4562. [PMID: 31325353 PMCID: PMC7379488 DOI: 10.1111/1462-2920.14750] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2019] [Revised: 07/12/2019] [Accepted: 07/14/2019] [Indexed: 02/05/2023]
Abstract
Infectious agents such as the bacteria Vibrio aestuarianus or Ostreid herpesvirus 1 have been repeatedly associated with dramatic disease outbreaks of Crassostrea gigas beds in Europe. Beside roles played by these pathogens, microbial infections in C. gigas may derive from the contribution of a larger number of microorganisms than previously thought, according to an emerging view supporting the polymicrobial nature of bivalve diseases. In this study, the microbial communities associated with a large number of C. gigas samples collected during recurrent mortality episodes at different European sites were investigated by real-time PCR and 16SrRNA gene-based microbial profiling. A new target enrichment next-generation sequencing protocol for selective capturing of 884 phylogenetic and virulence markers of the potential microbial pathogenic community in oyster tissue was developed allowing high taxonomic resolution analysis of the bivalve pathobiota. Comparative analysis of contrasting C. gigas samples conducted using these methods revealed that oyster experiencing mortality outbreaks displayed signs of microbiota disruption associated with the presence of previously undetected potential pathogenic microbial species mostly belonging to genus Vibrio and Arcobacter. The role of these species and their consortia should be targeted by future studies aiming to shed light on mechanisms underlying polymicrobial infections in C. gigas.
Collapse
Affiliation(s)
- Aide Lasa
- Department of Earth, Environmental and Life Sciences (DISTAV)University of GenoaGenoaItaly
- Department of Microbiology and ParasitologyUniversidade de Santiago de CompostelaSantiago de CompostelaSpain
| | - Andrea di Cesare
- National Research Council‐Water Research Institute (CNR‐IRSA), Largo Tonolli 50, 28822VerbaniaItaly
| | - Giovanni Tassistro
- Department of Earth, Environmental and Life Sciences (DISTAV)University of GenoaGenoaItaly
| | - Alessio Borello
- Department of Earth, Environmental and Life Sciences (DISTAV)University of GenoaGenoaItaly
| | - Stefano Gualdi
- Department of Plant and Microbial BiologyUniversity of ZürichZürichSwitzerland
| | | | | | - Deborah Cheslett
- Fish Health UnitThe Marine Institute, Rinville OranmoreGalwayIreland
| | - Amanda Brechon
- Fish Health UnitThe Marine Institute, Rinville OranmoreGalwayIreland
| | - Christine Paillard
- Laboratoire des sciences de l'Environnement Marin, Institut Universitaire Européen de la MUniversité de Bretagne Occidentale – UMR6539 CNRS/UBO/IRD/IfremerPlouzanéFrance
| | - Adeline Bidault
- Laboratoire des sciences de l'Environnement Marin, Institut Universitaire Européen de la MUniversité de Bretagne Occidentale – UMR6539 CNRS/UBO/IRD/IfremerPlouzanéFrance
| | - Fabrice Pernet
- Ifremer, Physiologie Fonctionnelle des Organismes MarinsUMR 6539 LEMAR (CNRS/Ifremer/IRD/UBO) Technopole Iroise, CS 1007029280PlouzaneFrance
| | - Laura Canesi
- Department of Earth, Environmental and Life Sciences (DISTAV)University of GenoaGenoaItaly
| | - Paolo Edomi
- Department of Life SciencesUniversity of TriesteTriesteItaly
| | | | - Carla Pruzzo
- Department of Earth, Environmental and Life Sciences (DISTAV)University of GenoaGenoaItaly
| | - Luigi Vezzulli
- Department of Earth, Environmental and Life Sciences (DISTAV)University of GenoaGenoaItaly
| |
Collapse
|
13
|
Rahmani A, Corre E, Richard G, Bidault A, Lambert C, Oliveira L, Thompson C, Thompson F, Pichereau V, Paillard C. Transcriptomic analysis of clam extrapallial fluids reveals immunity and cytoskeleton alterations in the first week of Brown Ring Disease development. Fish Shellfish Immunol 2019; 93:940-948. [PMID: 31419531 DOI: 10.1016/j.fsi.2019.08.025] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2019] [Revised: 08/09/2019] [Accepted: 08/10/2019] [Indexed: 02/05/2023]
Abstract
The Brown Ring Disease is an infection caused by the bacterium Vibrio tapetis on the Manila clam Ruditapes philippinarum. The process of infection, in the extrapallial fluids (EPFs) of clams, involves alteration of immune functions, in particular on hemocytes which are the cells responsible of phagocytosis. Disorganization of the actin-cytoskeleton in infected clams is a part of what leads to this alteration. This study is the first transcriptomic approach based on collection of extrapallial fluids on living animals experimentally infected by V. tapetis. We performed differential gene expression analysis of EPFs in two experimental treatments (healthy-against infected-clams by V. tapetis), and showed the deregulation of 135 genes. In infected clams, a downregulation of transcripts implied in immune functions (lysosomal activity and complement- and lectin-dependent PRR pathways) was observed during infection. We also showed a deregulation of transcripts encoding proteins involved in the actin cytoskeleton organization such as an overexpression of β12-Thymosin (which is an actin sequestration protein) or a downregulation of proteins that closely interact with capping proteins such as Coactosin, that counteract action of capping proteins, or Profilin. We validated these transcriptomic results by cellular physiological analyses that showed a decrease of the lysosome amounts and the disorganization of actin cytoskeleton in infected hemocytes.
Collapse
Affiliation(s)
- Alexandra Rahmani
- Univ Brest, CNRS, IRD, Ifremer, UMR 6539 LEMAR, F-29280, Plouzane, France.
| | - Erwan Corre
- Sorbonne Universités, Université Pierre et Marie Curie-Paris 6, CNRS, FR2424, Station Biologique de Roscoff, Roscoff, France
| | - Gaëlle Richard
- Univ Brest, CNRS, IRD, Ifremer, UMR 6539 LEMAR, F-29280, Plouzane, France
| | - Adeline Bidault
- Univ Brest, CNRS, IRD, Ifremer, UMR 6539 LEMAR, F-29280, Plouzane, France
| | - Christophe Lambert
- Univ Brest, CNRS, IRD, Ifremer, UMR 6539 LEMAR, F-29280, Plouzane, France
| | - Louisi Oliveira
- Centro de Ciências da Saúde, Instituto de Biologia, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil
| | - Cristiane Thompson
- Centro de Ciências da Saúde, Instituto de Biologia, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil
| | - Fabiano Thompson
- Centro de Ciências da Saúde, Instituto de Biologia, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil
| | - Vianney Pichereau
- Univ Brest, CNRS, IRD, Ifremer, UMR 6539 LEMAR, F-29280, Plouzane, France.
| | - Christine Paillard
- Univ Brest, CNRS, IRD, Ifremer, UMR 6539 LEMAR, F-29280, Plouzane, France.
| |
Collapse
|
14
|
Rodrigues S, Paillard C, Van Dillen S, Tahrioui A, Berjeaud JM, Dufour A, Bazire A. Relation between Biofilm and Virulence in Vibrio tapetis: A Transcriptomic Study. Pathogens 2018; 7:pathogens7040092. [PMID: 30486310 PMCID: PMC6313714 DOI: 10.3390/pathogens7040092] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2018] [Revised: 11/20/2018] [Accepted: 11/23/2018] [Indexed: 02/05/2023] Open
Abstract
Marine pathogenic bacteria are able to form biofilms on many surfaces, such as mollusc shells, and they can wait for the appropriate opportunity to induce their virulence. Vibrio tapetis can develop such biofilms on the inner surface of shells of the Ruditapes philippinarum clam, leading to the formation of a brown conchiolin deposit in the form of a ring, hence the name of the disease: Brown Ring Disease. The virulence of V. tapetis is presumed to be related to its capacity to form biofilms, but the link has never been clearly established at the physiological or genetic level. In the present study, we used RNA-seq analysis to identify biofilm- and virulence-related genes displaying altered expression in biofilms compared to the planktonic condition. A flow cell system was employed to grow biofilms to obtain both structural and transcriptomic views of the biofilms. We found that 3615 genes were differentially expressed, confirming that biofilm and planktonic lifestyles are very different. As expected, the differentially expressed genes included those involved in biofilm formation, such as motility- and polysaccharide synthesis-related genes. The data show that quorum sensing is probably mediated by the AI-2/LuxO system in V. tapetis biofilms. The expression of genes encoding the Type VI Secretion System and associated exported proteins are strongly induced, suggesting that V. tapetis activates this virulence factor when living in biofilm.
Collapse
Affiliation(s)
- Sophie Rodrigues
- Laboratoire de Biotechnologie et Chimie Marines (LBCM), EA 3884, LBCM, IUEM Université de Bretagne-Sud, 56100 Lorient, France.
| | - Christine Paillard
- UMR6539, Laboratoire des Sciences de l'Environnement Marin (LEMAR), Centre National de la Recherche Scientifique, Institut Universitaire Européen de la Mer, Université de Brest, UBO, IRD, Ifremer, 29280 Plouzané, France.
| | - Sabine Van Dillen
- DuPont Nutrition and Health, Danisco France SAS, BP10, F-86220 Dangé-Saint-Romain, France.
| | - Ali Tahrioui
- Laboratory of Microbiology Signals and Microenvironment LMSM EA 4312, University Rouen-Normandy, 27000 Evreux, France.
| | - Jean-Marc Berjeaud
- UMR 7267, Laboratoire d'Ecologie et Biologie des interactions (EBI), Université de Poitiers, 86000 Poitiers, France.
| | - Alain Dufour
- Laboratoire de Biotechnologie et Chimie Marines (LBCM), EA 3884, LBCM, IUEM Université de Bretagne-Sud, 56100 Lorient, France.
| | - Alexis Bazire
- Laboratoire de Biotechnologie et Chimie Marines (LBCM), EA 3884, LBCM, IUEM Université de Bretagne-Sud, 56100 Lorient, France.
| |
Collapse
|
15
|
Wessel N, Martin S, Badou A, Dubois P, Huchette S, Julia V, Nunes F, Harney E, Paillard C, Auzoux-bordenave S. Effect of CO2–induced ocean acidification on the early development and shell mineralization of the European abalone (Haliotis tuberculata). Journal of Experimental Marine Biology and Ecology 2018; 508:52-63. [DOI: 10.1016/j.jembe.2018.08.005] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
|
16
|
Delavat F, Bidault A, Pichereau V, Paillard C. Rapid and efficient protocol to introduce exogenous DNA in Vibrio harveyi and Pseudoalteromonas sp. J Microbiol Methods 2018; 154:1-5. [PMID: 30287352 DOI: 10.1016/j.mimet.2018.09.022] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2018] [Revised: 09/28/2018] [Accepted: 09/28/2018] [Indexed: 02/08/2023]
Abstract
Vibrio campbellii BAA-1116 is renowned for its bioluminescence properties, and genetic tools are available to genetically track this strain. However, many other ecologically important V. harveyi strains exist, for which only few genetic tools are available. In this study, a rapid electroporation protocol was developed to transform replicative plasmids in various environmental V. harveyi and Pseudoalteromonas strains. Moreover, a mini-Tn7 delivery system was modified to site-specifically integrate mini-transposons in the genome of V. harveyi ORM4. As a proof-of-principle, replicative plasmids carrying bioreporters were introduced by electroporation in V. harveyi ORM4 cells, and gene expression was followed at the single cell level. We could demonstrate that a flagellar gene is subjected to bimodal gene expression in V. harveyi ORM4, being highly expressed in 10% of the population in stationary phase. This study extends the possibilities to study environmental Vibrio strains and uncovers the occurrence of phenotypic heterogeneity in flagellar expression in Vibrio.
Collapse
Affiliation(s)
- François Delavat
- Laboratoire des sciences de l'Environnement Marin, Institut Universitaire Européen de la Mer, Université de Bretagne Occidentale - UMR6539 CNRS/UBO/IRD/Ifremer, Plouzané, France.
| | - Adeline Bidault
- Laboratoire des sciences de l'Environnement Marin, Institut Universitaire Européen de la Mer, Université de Bretagne Occidentale - UMR6539 CNRS/UBO/IRD/Ifremer, Plouzané, France
| | - Vianney Pichereau
- Laboratoire des sciences de l'Environnement Marin, Institut Universitaire Européen de la Mer, Université de Bretagne Occidentale - UMR6539 CNRS/UBO/IRD/Ifremer, Plouzané, France
| | - Christine Paillard
- Laboratoire des sciences de l'Environnement Marin, Institut Universitaire Européen de la Mer, Université de Bretagne Occidentale - UMR6539 CNRS/UBO/IRD/Ifremer, Plouzané, France
| |
Collapse
|
17
|
Destoumieux-Garzón D, Mavingui P, Boetsch G, Boissier J, Darriet F, Duboz P, Fritsch C, Giraudoux P, Le Roux F, Morand S, Paillard C, Pontier D, Sueur C, Voituron Y. The One Health Concept: 10 Years Old and a Long Road Ahead. Front Vet Sci 2018; 5:14. [PMID: 29484301 PMCID: PMC5816263 DOI: 10.3389/fvets.2018.00014] [Citation(s) in RCA: 261] [Impact Index Per Article: 43.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2017] [Accepted: 01/22/2018] [Indexed: 02/05/2023] Open
Abstract
Over the past decade, a significant increase in the circulation of infectious agents was observed. With the spread and emergence of epizootics, zoonoses, and epidemics, the risks of pandemics became more and more critical. Human and animal health has also been threatened by antimicrobial resistance, environmental pollution, and the development of multifactorial and chronic diseases. This highlighted the increasing globalization of health risks and the importance of the human-animal-ecosystem interface in the evolution and emergence of pathogens. A better knowledge of causes and consequences of certain human activities, lifestyles, and behaviors in ecosystems is crucial for a rigorous interpretation of disease dynamics and to drive public policies. As a global good, health security must be understood on a global scale and from a global and crosscutting perspective, integrating human health, animal health, plant health, ecosystems health, and biodiversity. In this study, we discuss how crucial it is to consider ecological, evolutionary, and environmental sciences in understanding the emergence and re-emergence of infectious diseases and in facing the challenges of antimicrobial resistance. We also discuss the application of the "One Health" concept to non-communicable chronic diseases linked to exposure to multiple stresses, including toxic stress, and new lifestyles. Finally, we draw up a list of barriers that need removing and the ambitions that we must nurture for the effective application of the "One Health" concept. We conclude that the success of this One Health concept now requires breaking down the interdisciplinary barriers that still separate human and veterinary medicine from ecological, evolutionary, and environmental sciences. The development of integrative approaches should be promoted by linking the study of factors underlying stress responses to their consequences on ecosystem functioning and evolution. This knowledge is required for the development of novel control strategies inspired by environmental mechanisms leading to desired equilibrium and dynamics in healthy ecosystems and must provide in the near future a framework for more integrated operational initiatives.
Collapse
Affiliation(s)
- Delphine Destoumieux-Garzón
- CNRS, Interactions Hôtes-Pathogènes-Environnements (IHPE), UMR5244, Université de Perpignan Via Domitia, Université de Montpellier, Ifremer, Montpellier, France
| | - Patrick Mavingui
- Université de La Reunion, UMR PIMIT (Processus Infectieux en Milieu Insulaire Tropical), INSERM 1187, CNRS 9192, IRD 249, Sainte-Clotilde, La Réunion, France
- UMR Ecologie Microbienne, CNRS, INRA, VetAgro Sup, Claude Bernard University Lyon 1, Université de Lyon, Villeurbanne, France
| | - Gilles Boetsch
- UMI 3189 “Environnement, Santé, Sociétés”, Faculty of Medicine, Cheikh Anta Diop University, Dakar-Fann, Senegal
- Téssékéré International Human-Environment Observatory Labex DRIIM, CNRS and Cheikh Anta Diop University, Dakar, Senegal
| | - Jérôme Boissier
- Université de Perpignan Via Domitia, Interactions Hôtes-Pathogènes-Environnements (IHPE), UMR5244, CNRS, Ifremer, Université de Montpellier, Perpignan, France
| | - Frédéric Darriet
- Institut de Recherche pour le Développement, Maladies Infectieuses et Vecteurs, Ecologie, Génétique, Evolution et Contrôle (MIVEGEC), IRD, CNRS, Université de Montpellier, Montpellier, France
| | - Priscilla Duboz
- UMI 3189 “Environnement, Santé, Sociétés”, Faculty of Medicine, Cheikh Anta Diop University, Dakar-Fann, Senegal
- Téssékéré International Human-Environment Observatory Labex DRIIM, CNRS and Cheikh Anta Diop University, Dakar, Senegal
| | - Clémentine Fritsch
- Laboratoire Chrono-Environnement, UMR 6249 CNRS/Université Bourgogne Franche-Comté Usc, INRA, Besançon, France
| | - Patrick Giraudoux
- Laboratoire Chrono-Environnement, UMR 6249 CNRS/Université Bourgogne Franche-Comté Usc, INRA, Besançon, France
- Institut Universitaire de France, Paris, France
| | - Frédérique Le Roux
- Ifremer, Unité Physiologie Fonctionnelle des Organismes Marins, Plouzané, France
| | - Serge Morand
- Institut des Sciences de l’Évolution (ISEM), UMR 5554, CNRS, Université de Montpellier, CIRAD, IRD, EPHE, Montpellier, France
- UPR ASTRE, CIRAD, Montpellier, France
| | - Christine Paillard
- Laboratoire des Sciences de l’Environnement Marin (LEMAR), Institut Universitaire Européen de la Mer, Université de Bretagne Occidentale, UMR 6539, CNRS, UBO, IRD, Ifremer, Plouzané, France
| | - Dominique Pontier
- Laboratoire de Biométrie et Biologie Evolutive UMR5558, CNRS, Université de Lyon, Université Claude Bernard Lyon 1, Villeurbanne, France
- LabEx Ecofect, Eco-Evolutionary Dynamics of Infectious Diseases, University of Lyon, Lyon, France
| | - Cédric Sueur
- Université de Strasbourg, CNRS, IPHC, UMR 7178, Strasbourg, France
| | - Yann Voituron
- Laboratoire d’Ecologie des Hydrosystèmes Naturels et Anthropisés, UMR 5023, CNRS, Université Claude Bernard Lyon1, Université de Lyon, Villeurbanne, France
| |
Collapse
|
18
|
Dias GM, Bidault A, Le Chevalier P, Choquet G, Der Sarkissian C, Orlando L, Medigue C, Barbe V, Mangenot S, Thompson CC, Thompson FL, Jacq A, Pichereau V, Paillard C. Vibrio tapetis Displays an Original Type IV Secretion System in Strains Pathogenic for Bivalve Molluscs. Front Microbiol 2018; 9:227. [PMID: 29515533 PMCID: PMC5825899 DOI: 10.3389/fmicb.2018.00227] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023] Open
Abstract
The Brown Ring Disease (BRD) caused high mortality rates since 1986 in the Manila clam Venerupis philippinarum introduced and cultured in Western Europe from the 1970s. The causative agent of BRD is a Gram-Negative bacterium, Vibrio tapetis, which is also pathogenic to fish. Here we report the first assembly of the complete genome of V. tapetis CECT4600T, together with the genome sequences of 16 additional strains isolated across a broad host and geographic range. Our extensive genome dataset allowed us to describe the pathogen pan- and core genomes and to identify putative virulence factors. The V. tapetis core genome consists of 3,352 genes, including multiple potential virulence factors represented by haemolysins, transcriptional regulators, Type I restriction modification system, GGDEF domain proteins, several conjugative plasmids, and a Type IV secretion system. Future research on the coevolutionary arms race between V. tapetis virulence factors and host resistance mechanisms will improve our understanding of how pathogenicity develops in this emerging pathogen.
Collapse
Affiliation(s)
- Graciela M. Dias
- Laboratoire des Sciences de l'Environnement Marin, Université de Bretagne Occidentale, UMR 6539 UBO/Centre National de la Recherche Scientifique/IRD/Ifremer, Institut Universitaire Européen de la Mer, Plouzané, France
- Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil
| | - Adeline Bidault
- Laboratoire des Sciences de l'Environnement Marin, Université de Bretagne Occidentale, UMR 6539 UBO/Centre National de la Recherche Scientifique/IRD/Ifremer, Institut Universitaire Européen de la Mer, Plouzané, France
| | - Patrick Le Chevalier
- Laboratoire de Biotechnologie et Chimie Marine, Université de Bretagne Occidentale, Quimper, France
| | - Gwenaëlle Choquet
- Laboratoire des Sciences de l'Environnement Marin, Université de Bretagne Occidentale, UMR 6539 UBO/Centre National de la Recherche Scientifique/IRD/Ifremer, Institut Universitaire Européen de la Mer, Plouzané, France
| | - Clio Der Sarkissian
- Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark
| | - Ludovic Orlando
- Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark
- Laboratoire d'Anthropobiologie Moléculaire et d'Imagerie de Synthèse, Centre National de la Recherche Scientifique UMR 5288, Université de Toulouse, Université Paul Sabatier, Toulouse, France
| | - Claudine Medigue
- CEA, Genoscope, Laboratoire d'Analyses Bioinformatiques pour la Génomique et le Métabolisme, Université d'Evry, Centre National de la Recherche Scientifique-UMR 8030, Evry, France
| | - Valerie Barbe
- CEA, Genoscope, Laboratoire d'Analyses Bioinformatiques pour la Génomique et le Métabolisme, Université d'Evry, Centre National de la Recherche Scientifique-UMR 8030, Evry, France
| | - Sophie Mangenot
- CEA, Institut de biologie François-Jacob, Genoscope, Laboratoire de Biologie Moléculaire pour l'Etude des Génomes, Evry, France
| | - Cristiane C. Thompson
- Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil
| | - Fabiano L. Thompson
- Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil
| | - Annick Jacq
- Institute for Integrative Biology of the Cell, CEA, Centre National de la Recherche Scientifique, Univ. Paris-Sud, Université Paris-Saclay, Gif-sur-Yvette, France
| | - Vianney Pichereau
- Laboratoire des Sciences de l'Environnement Marin, Université de Bretagne Occidentale, UMR 6539 UBO/Centre National de la Recherche Scientifique/IRD/Ifremer, Institut Universitaire Européen de la Mer, Plouzané, France
| | - Christine Paillard
- Laboratoire des Sciences de l'Environnement Marin, Université de Bretagne Occidentale, UMR 6539 UBO/Centre National de la Recherche Scientifique/IRD/Ifremer, Institut Universitaire Européen de la Mer, Plouzané, France
- *Correspondence: Christine Paillard
| |
Collapse
|
19
|
Laurich JR, Dove R, Paillard C, Dufour SC. Life and death in facultative chemosymbioses: control of bacterial population dynamics in the Thyasiridae. Symbiosis 2018; 75:123-33. [DOI: 10.1007/s13199-017-0525-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
|
20
|
Der Sarkissian C, Pichereau V, Dupont C, Ilsøe PC, Perrigault M, Butler P, Chauvaud L, Eiríksson J, Scourse J, Paillard C, Orlando L. Ancient DNA analysis identifies marine mollusc shells as new metagenomic archives of the past. Mol Ecol Resour 2017; 17:835-853. [PMID: 28394451 DOI: 10.1111/1755-0998.12679] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2016] [Revised: 03/24/2017] [Accepted: 04/03/2017] [Indexed: 02/05/2023]
Abstract
Marine mollusc shells enclose a wealth of information on coastal organisms and their environment. Their life history traits as well as (palaeo-) environmental conditions, including temperature, food availability, salinity and pollution, can be traced through the analysis of their shell (micro-) structure and biogeochemical composition. Adding to this list, the DNA entrapped in shell carbonate biominerals potentially offers a novel and complementary proxy both for reconstructing palaeoenvironments and tracking mollusc evolutionary trajectories. Here, we assess this potential by applying DNA extraction, high-throughput shotgun DNA sequencing and metagenomic analyses to marine mollusc shells spanning the last ~7,000 years. We report successful DNA extraction from shells, including a variety of ancient specimens, and find that DNA recovery is highly dependent on their biomineral structure, carbonate layer preservation and disease state. We demonstrate positive taxonomic identification of mollusc species using a combination of mitochondrial DNA genomes, barcodes, genome-scale data and metagenomic approaches. We also find shell biominerals to contain a diversity of microbial DNA from the marine environment. Finally, we reconstruct genomic sequences of organisms closely related to the Vibrio tapetis bacteria from Manila clam shells previously diagnosed with Brown Ring Disease. Our results reveal marine mollusc shells as novel genetic archives of the past, which opens new perspectives in ancient DNA research, with the potential to reconstruct the evolutionary history of molluscs, microbial communities and pathogens in the face of environmental changes. Other future applications include conservation of endangered mollusc species and aquaculture management.
Collapse
Affiliation(s)
- Clio Der Sarkissian
- Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen K, Denmark
| | - Vianney Pichereau
- Lemar UMR6539 CNRS/UBO/IRD/Ifremer, Université de Brest, IUEM, Plouzané, France
| | | | - Peter C Ilsøe
- Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen K, Denmark
| | - Mickael Perrigault
- Lemar UMR6539 CNRS/UBO/IRD/Ifremer, Université de Brest, IUEM, Plouzané, France
| | - Paul Butler
- CGES, College of Life and Environmental Sciences, University of Exeter, Penryn, Cornwall, UK
| | - Laurent Chauvaud
- Lemar UMR6539 CNRS/UBO/IRD/Ifremer, Université de Brest, IUEM, Plouzané, France
| | - Jón Eiríksson
- Institute of Earth Sciences, University of Iceland, Askja, Reykjavík, Iceland
| | - James Scourse
- CGES, College of Life and Environmental Sciences, University of Exeter, Penryn, Cornwall, UK
| | - Christine Paillard
- Lemar UMR6539 CNRS/UBO/IRD/Ifremer, Université de Brest, IUEM, Plouzané, France
| | - Ludovic Orlando
- Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen K, Denmark
- Université de Toulouse, University Paul Sabatier (UPS), Laboratoire AMIS, CNRS UMR 5288, Toulouse, France
| |
Collapse
|
21
|
Dubief B, Nunes FLD, Basuyaux O, Paillard C. Immune priming and portal of entry effectors improve response to vibrio infection in a resistant population of the European abalone. Fish Shellfish Immunol 2017; 60:255-264. [PMID: 27836724 DOI: 10.1016/j.fsi.2016.11.017] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/23/2016] [Revised: 10/20/2016] [Accepted: 11/06/2016] [Indexed: 02/08/2023]
Abstract
Since 1997, populations of the European abalone Haliotis tuberculata suffer mass mortalities attributed to the bacterium Vibrio harveyi. These mortalities occur at the spawning season, when the abalone immune system is depressed, and when temperatures exceed 17 °C, leading to favorable conditions for V. harveyi proliferation. In order to identify mechanisms of disease resistance, experimental successive infections were carried out on two geographically distinct Brittany populations: one that has suffered recurrent mortalities (Saint-Malo) and one that has not been impacted by the disease (Molène). Furthermore, abalone surviving these two successive bacterial challenges and uninfected abalone were used for several post-infection analyses. The Saint-Malo population was found to be resistant to V. harveyi infection, with a survival rate of 95% compared to 51% for Molène. While in vitro quantification of phagocytosis by flow cytometry showed strong inhibition following the first infection, no inhibition of phagocytosis was observed following the second infection for Saint-Malo, suggesting an immune priming effect. Moreover, assays of phagocytosis of GFP-labelled V. harveyi performed two months post-infection show an inhibition of phagocytosis by extracellular products of V. harveyi for uninfected abalone, while no effect was observed for previously infected abalone from Saint-Malo, suggesting that the effects of immune priming may last upwards of two months. Detection of V. harveyi by qPCR showed that a significantly greater number of abalone from the susceptible population were positive for V. harveyi in the gills, indicating that portal of entry effectors may play a role in resistance to the disease. Collectively, these results suggest a potential synergistic effect of gills and hemolymph in the resistance of H. tuberculata against V. harveyi with an important involvement of the gills, the portal of entry of the bacteria.
Collapse
Affiliation(s)
- Bruno Dubief
- Laboratoire des Sciences de l'Environnement Marin (LEMAR), UMR6539, CNRS/UBO/IRD/Ifremer, Institut Universitaire Européen de la Mer, University of Brest (UBO), Université Européenne de Bretagne (UEB), Place Nicolas Copernic, 29280, Plouzané, France.
| | - Flavia L D Nunes
- Laboratoire des Sciences de l'Environnement Marin (LEMAR), UMR6539, CNRS/UBO/IRD/Ifremer, Institut Universitaire Européen de la Mer, University of Brest (UBO), Université Européenne de Bretagne (UEB), Place Nicolas Copernic, 29280, Plouzané, France; Ifremer Centre de Bretagne, DYNECO, Laboratoire d'Ecologie Benthique Côtière (LEBCO), 29280, Plouzané, France
| | - Olivier Basuyaux
- Synergie Mer et Littoral, Centre Expérimental ZAC de Blainville, 50560, Blainville-sur-mer, France
| | - Christine Paillard
- Laboratoire des Sciences de l'Environnement Marin (LEMAR), UMR6539, CNRS/UBO/IRD/Ifremer, Institut Universitaire Européen de la Mer, University of Brest (UBO), Université Européenne de Bretagne (UEB), Place Nicolas Copernic, 29280, Plouzané, France.
| |
Collapse
|
22
|
Harney E, Dubief B, Boudry P, Basuyaux O, Schilhabel MB, Huchette S, Paillard C, Nunes FLD. De novo assembly and annotation of the European abalone Haliotis tuberculata transcriptome. Mar Genomics 2016; 28:11-16. [PMID: 26971316 DOI: 10.1016/j.margen.2016.03.002] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2016] [Accepted: 03/03/2016] [Indexed: 02/08/2023]
Abstract
The European abalone Haliotis tuberculata is a delicacy and consequently a commercially valuable gastropod species. Aquaculture production and wild populations are subjected to multiple climate-associated stressors and anthropogenic pressures, including rising sea-surface temperatures, ocean acidification and an emerging pathogenic Vibrio infection. Transcript expression data provides a valuable resource for understanding abalone responses to variation in the biotic and abiotic environment. To generate an extensive transcriptome, we performed next-generation sequencing of RNA on larvae exposed to temperature and pH variation and on haemolymph of adults from two wild populations after experimental infection with Vibrio harveyi. We obtained more than 1.5 billion raw paired-end reads, which were assembled into 328,519 contigs. Filtration and clustering produced a transcriptome of 41,099 transcripts, of which 10,626 (25.85%) were annotated with Blast hits, and 7380 of these were annotated with Gene Ontology (GO) terms in Blast2Go. A differential expression analysis comparing all samples from the two life stages identified 5690 and 10,759 transcripts with significantly higher expression in larvae and adult haemolymph respectively. This is the greatest sequencing effort yet in the Haliotis genus, and provides the first high-throughput transcriptomic resource for H. tuberculata.
Collapse
Affiliation(s)
- Ewan Harney
- Laboratoire des Sciences de l'Environnement Marin (LEMAR), UMR6539 CNRS/UBO/IRD/Ifremer, Institut Universitaire Européen de la Mer, University of Brest (UBO), Université Européenne de Bretagne (UEB), Place Nicolas Copernic, 29280, Plouzané, France.
| | - Bruno Dubief
- Laboratoire des Sciences de l'Environnement Marin (LEMAR), UMR6539 CNRS/UBO/IRD/Ifremer, Institut Universitaire Européen de la Mer, University of Brest (UBO), Université Européenne de Bretagne (UEB), Place Nicolas Copernic, 29280, Plouzané, France
| | - Pierre Boudry
- Ifremer, Laboratoire des Sciences de l'Environnement Marin (LEMAR), UMR 6539 CNRS/UBO/IRD/Ifremer, Centre Bretagne Z.I. Pointe du Diable, 29280 Plouzané, France
| | - Olivier Basuyaux
- SMEL (Synergie Mer Et Littoral), Centre Expérimental, 50560 Blainville-sur-Mer, France
| | - Markus B Schilhabel
- Institute of Clinical Molecular Biology, Christian-Albrechts-University of Kiel, 24105 Kiel, Germany
| | | | - Christine Paillard
- Laboratoire des Sciences de l'Environnement Marin (LEMAR), UMR6539 CNRS/UBO/IRD/Ifremer, Institut Universitaire Européen de la Mer, University of Brest (UBO), Université Européenne de Bretagne (UEB), Place Nicolas Copernic, 29280, Plouzané, France
| | - Flavia L D Nunes
- Laboratoire des Sciences de l'Environnement Marin (LEMAR), UMR6539 CNRS/UBO/IRD/Ifremer, Institut Universitaire Européen de la Mer, University of Brest (UBO), Université Européenne de Bretagne (UEB), Place Nicolas Copernic, 29280, Plouzané, France
| |
Collapse
|
23
|
Richard G, Guérard F, Corporeau C, Lambert C, Paillard C, Pernet F. Metabolic responses of clam Ruditapes philippinarum exposed to its pathogen Vibrio tapetis in relation to diet. Dev Comp Immunol 2016; 60:96-107. [PMID: 26921670 DOI: 10.1016/j.dci.2016.02.026] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2015] [Revised: 02/18/2016] [Accepted: 02/19/2016] [Indexed: 02/08/2023]
Abstract
We investigated the effect of brown ring disease (BRD) development and algal diet on energy reserves and activity of enzymes related to energy metabolism, antioxidant system and immunity in Manila clam, Ruditapes philippinarum. We found that algal diet did not impact the metabolic response of clams exposed to Vibrio tapetis. At two days post-injection (dpi), activities of superoxide dismutase and glutathione peroxidase (GPx) decreased whereas activities of nitric oxide synthase (iNOS) and catalase increased in infected clams, although no clinical signs were visible (BRD-). At 7 dpi, activities of several antioxidant and immune-related enzymes were markedly increased in BRD-likely indicating an efficient reactive oxygen species (ROS) scavenging compared to animals which developed clinical signs of BRD (BRD+). Therefore, resistance to BRD clinical signs appearance was associated with higher detoxification of ROS and enhancement of immune response. This study provides new biochemical indicators of disease resistance and a more comprehensive view of the global antioxidant response of clam to BRD development.
Collapse
Affiliation(s)
- Gaëlle Richard
- UMR 6539 CNRS UBO IRD IFREMER, LEMAR - IUEM - UBO, Institut Universitaire Européen de la Mer, Université de Bretagne Occidentale, Technopôle Brest-Iroise - Rue Dumont d'Urville, 29280 Plouzané, France.
| | - Fabienne Guérard
- UMR 6539 CNRS UBO IRD IFREMER, LEMAR - IUEM - UBO, Institut Universitaire Européen de la Mer, Université de Bretagne Occidentale, Technopôle Brest-Iroise - Rue Dumont d'Urville, 29280 Plouzané, France
| | - Charlotte Corporeau
- Ifremer, UMR 6539 LEMAR (CNRS/UBO/IRD/Ifremer), Technopôle Brest-Iroise CS 10070, 29280 Plouzané, France
| | - Christophe Lambert
- UMR 6539 CNRS UBO IRD IFREMER, LEMAR - IUEM - UBO, Institut Universitaire Européen de la Mer, Université de Bretagne Occidentale, Technopôle Brest-Iroise - Rue Dumont d'Urville, 29280 Plouzané, France
| | - Christine Paillard
- UMR 6539 CNRS UBO IRD IFREMER, LEMAR - IUEM - UBO, Institut Universitaire Européen de la Mer, Université de Bretagne Occidentale, Technopôle Brest-Iroise - Rue Dumont d'Urville, 29280 Plouzané, France
| | - Fabrice Pernet
- Ifremer, UMR 6539 LEMAR (CNRS/UBO/IRD/Ifremer), Technopôle Brest-Iroise CS 10070, 29280 Plouzané, France
| |
Collapse
|
24
|
García-Bueno N, Dumay J, Guerin T, Turpin V, Paillard C, Stiger-Pouvreau V, Pouchus YF, Marín-Atucha AA, Decottignies P, Fleurence J. Seasonal variation in the antivibrio activity of two organic extracts from two red seaweed:Palmaria palmataand the introducedGrateloupia turuturuagainst the abalone pathogenVibrio harveyi. Aquat Living Resour 2016. [DOI: 10.1051/alr/2016003] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
|
25
|
Cardinaud M, Dheilly NM, Huchette S, Moraga D, Paillard C. The early stages of the immune response of the European abalone Haliotis tuberculata to a Vibrio harveyi infection. Dev Comp Immunol 2015; 51:287-97. [PMID: 25766281 DOI: 10.1016/j.dci.2015.02.019] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2014] [Revised: 02/25/2015] [Accepted: 02/26/2015] [Indexed: 02/07/2023]
Abstract
Vibrio harveyi is a marine bacterial pathogen responsible for episodic abalone mortalities in France, Japan and Australia. In the European abalone, V. harveyi invades the circulatory system in a few hours after exposure and is lethal after 2 days of infection. In this study, we investigated the responses of European abalone immune cells over the first 24 h of infection. Results revealed an initial induction of immune gene expression including Rel/NF-kB, Mpeg and Clathrin. It is rapidly followed by a significant immuno-suppression characterized by reduced cellular hemocyte parameters, immune response gene expressions and enzymatic activities. Interestingly, Ferritin was overexpressed after 24 h of infection suggesting that abalone attempt to counter V. harveyi infection using soluble effectors. Immune function alteration was positively correlated with V. harveyi concentration. This study provides the evidence that V. harveyi has a hemolytic activity and an immuno-suppressive effect in the European abalone.
Collapse
Affiliation(s)
- Marion Cardinaud
- UMR 6539-LEMAR (Laboratoire des Sciences de l'Environnement Marin), IUEM (Institut Universitaire Européen de la Mer), Université de Bretagne Occidentale (UBO), CNRS, IRD, Ifremer, Technopôle Brest Iroise, 29280 Plouzané, France.
| | - Nolwenn M Dheilly
- School of Marine and Atmospheric Sciences, Stonybrook University, Stony Brook, NY 11794-5000 USA
| | | | - Dario Moraga
- UMR 6539-LEMAR (Laboratoire des Sciences de l'Environnement Marin), IUEM (Institut Universitaire Européen de la Mer), Université de Bretagne Occidentale (UBO), CNRS, IRD, Ifremer, Technopôle Brest Iroise, 29280 Plouzané, France
| | - Christine Paillard
- UMR 6539-LEMAR (Laboratoire des Sciences de l'Environnement Marin), IUEM (Institut Universitaire Européen de la Mer), Université de Bretagne Occidentale (UBO), CNRS, IRD, Ifremer, Technopôle Brest Iroise, 29280 Plouzané, France.
| |
Collapse
|
26
|
Richard G, Le Bris C, Guérard F, Lambert C, Paillard C. Immune responses of phenoloxidase and superoxide dismutase in the manila clam Venerupis philippinarum challenged with Vibrio tapetis--part II: combined effect of temperature and two V. tapetis strains. Fish Shellfish Immunol 2015; 44:79-87. [PMID: 25655330 DOI: 10.1016/j.fsi.2014.12.039] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/08/2014] [Revised: 12/15/2014] [Accepted: 12/18/2014] [Indexed: 02/08/2023]
Abstract
Manila clams, Venerupis philippinarum (Adams and Reeve, 1850), were experimentally infected with two different bacterial strains and challenged with two different temperatures. Bacterial strains used in this study were Vibrio tapetis strain CECT4600(T), the causative agent of Brown Ring Disease (BRD) and V. tapetis strain LP2, supposed less virulent to V. philippinarum. V. tapetis is considered to proliferate at low temperatures, i.e. under 21 °C. In a global warming context we could hypothesize a decrease of mass mortalities caused by V. tapetis but these thermal changes could also directly impact the immune system of the host V. philippinarum. Thus, the aim of this study was to investigate the effects of the extrapallial injection with V. tapetis combined with temperature challenge on two enzymes activities in V. philippinarum. More precisely, after infection, phenoloxidase (PO) and superoxide dismutase (SOD), two major enzymes involved in immune response, were studied for 30 days in two compartments: the mantle and the hemolymph. Conchyolin Deposit Stages (CDS) and Shell Repair Stages (SRS) were also determined 30 days post-injection as a proxy of the virulence of the tested strains. In this study, we highlighted that host-pathogen interaction in a varying environment affects the enzymatic response of the host. The coupled effect of V. tapetis injection and temperature challenge was detected 30 days post injection and resulted in virulence differences. These findings were supported by CDS and SRS determination in clams and lead to the conclusion that clam's immunity could be enhanced at 22 °C while V. tapetis virulence is lowered at this temperature. Another result of our study was the increase of PO and SOD basal activities as clams are exposed to warmer temperature.
Collapse
Affiliation(s)
- Gaëlle Richard
- UMR 6539 CNRS UBO IRD IFREMER, LEMAR - IUEM - UBO, Institut Universitaire Européen de la Mer, Université de Bretagne Occidentale, Technopôle Brest-Iroise - Rue Dumont d'Urville, 29280 Plouzané, France.
| | - Cédric Le Bris
- UMR 6539 CNRS UBO IRD IFREMER, LEMAR - IUEM - UBO, Institut Universitaire Européen de la Mer, Université de Bretagne Occidentale, Technopôle Brest-Iroise - Rue Dumont d'Urville, 29280 Plouzané, France
| | - Fabienne Guérard
- UMR 6539 CNRS UBO IRD IFREMER, LEMAR - IUEM - UBO, Institut Universitaire Européen de la Mer, Université de Bretagne Occidentale, Technopôle Brest-Iroise - Rue Dumont d'Urville, 29280 Plouzané, France
| | - Christophe Lambert
- UMR 6539 CNRS UBO IRD IFREMER, LEMAR - IUEM - UBO, Institut Universitaire Européen de la Mer, Université de Bretagne Occidentale, Technopôle Brest-Iroise - Rue Dumont d'Urville, 29280 Plouzané, France
| | - Christine Paillard
- UMR 6539 CNRS UBO IRD IFREMER, LEMAR - IUEM - UBO, Institut Universitaire Européen de la Mer, Université de Bretagne Occidentale, Technopôle Brest-Iroise - Rue Dumont d'Urville, 29280 Plouzané, France
| |
Collapse
|
27
|
Rodrigues S, Paillard C, Dufour A, Bazire A. Antibiofilm Activity of the Marine Bacterium Pseudoalteromonas sp. 3J6 Against Vibrio tapetis, the Causative Agent of Brown Ring Disease. Probiotics Antimicrob Proteins 2015; 7:45-51. [PMID: 25331987 DOI: 10.1007/s12602-014-9173-3] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
Vibrio tapetis CECT4600 is a pathogenic Gram-negative bacterium causing the brown ring disease in the Manila clam Ruditapes philippinarum. This vibriosis is induced by bacterial attachment on the periostracal lamina, yielding a decalcification of the bivalve shell. As in many bacterial species, pathogenesis is likely related to biofilm formation. The proteinaceous exoproducts of the marine bacterium Pseudoalteromonas sp. 3J6 inhibit the formation of biofilm by most of the tested marine bacteria without affecting their planktonic growth. In the present work, we examined the sensitivity of V. tapetis to Pseudoalteromonas sp. 3J6 and its exoproducts. In V. tapetis CECT4600-GFP-Pseudoalteromonas sp. 3J6 co-cultures, the latter outcompeted V. tapetis whatever the growth mode (planktonic or biofilm), which could result from a slower growth of V. tapetis. Biofilms containing only V. tapetis were grown in vitro on a glass substratum under dynamic conditions. When the glass was coated with a culture supernatant of Pseudoalteromonas sp. 3J6 (SN(3J6)) prior to inoculating V. tapetis CECT4600-GFP, the bacterial attachment was about fivefold lower than in control experiment without SN3J6 and the biofilm formation was delayed by about 24 h: A full biofilm was obtained at 48 versus 24 h for the control. Moreover, a preformed V. tapetis biofilm (grown on SN(3J6)-free glass substratum) could be disrupted by incubating it with SN3J6. This data suggest that Pseudoalteromonas sp. 3J6 is a good candidate to set up an anti-V. tapetis strategy usable in aquaculture to grow V. tapetis-free Manila clam spats.
Collapse
Affiliation(s)
- Sophie Rodrigues
- EA 3884, LBCM, IUEM, Univ. Bretagne-Sud, 56100, Lorient, France,
| | | | | | | |
Collapse
|
28
|
Rodrigues S, Paillard C, Le Pennec G, Dufour A, Bazire A. Vibrio tapetis, the Causative Agent of Brown Ring Disease, Forms Biofilms with Spherical Components. Front Microbiol 2015; 6:1384. [PMID: 26696991 PMCID: PMC4672067 DOI: 10.3389/fmicb.2015.01384] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2015] [Accepted: 11/20/2015] [Indexed: 02/05/2023] Open
Abstract
Vibrio tapetis is a marine bacterium causing Brown Ring Disease (BRD) in the Manila clam Ruditapes philippinarum. V. tapetis biofilm formation remains unexplored depite the fact that it might be linked to pathogenicity. Our objectives were to characterize the in vitro biofilm formation of V. tapetis and evaluate the effects of culture conditions. Biofilm structure and its matrix composition were examined by confocal laser scanning microscopy and scanning electron microscopy. V. tapetis was able to form biofilms on a glass substratum within 24 h. Polysaccharides and extracellular DNA of the biofilm matrixes were differently distributed depending on the V. tapetis strains. Spherical components of about 1-2 μm diameter were found at the biofilm surface. They contain DNA, proteins, and seemed to be physically linked to bacteria and of cellular nature. Transmission electron microscopy showed that the spherical components were devoid of internal compartments. Temperatures >21°C inhibit BRD whereas low salinity (2%) favor it, none of the both conditions altered V. tapetis' ability to form biofilms in vitro. We suggest therefore that biofilm formation could play a role in the persistence of the pathogen in clam than in BRD symptoms.
Collapse
Affiliation(s)
- Sophie Rodrigues
- Université de Bretagne-Sud, EA 3884, LBCM, IUEMLorient, France
- UMR 6539 Laboratoire des Sciences de l'Environnement Marin, Centre National de la Recherche Scientifique, Institut Universitaire Européen de la Mer, Université de Brest, UBO, IRD, IfremerPlouzané, France
| | - Christine Paillard
- UMR 6539 Laboratoire des Sciences de l'Environnement Marin, Centre National de la Recherche Scientifique, Institut Universitaire Européen de la Mer, Université de Brest, UBO, IRD, IfremerPlouzané, France
| | - Gaël Le Pennec
- Université de Bretagne-Sud, EA 3884, LBCM, IUEMLorient, France
| | - Alain Dufour
- Université de Bretagne-Sud, EA 3884, LBCM, IUEMLorient, France
- *Correspondence: Alain Dufour
| | - Alexis Bazire
- Université de Bretagne-Sud, EA 3884, LBCM, IUEMLorient, France
- *Alexis Bazire
| |
Collapse
|
29
|
Bidault A, Richard GG, Le Bris C, Paillard C. Development of a Taqman real-time PCR assay for rapid detection and quantification of Vibrio tapetis in extrapallial fluids of clams. PeerJ 2015; 3:e1484. [PMID: 26713238 PMCID: PMC4690387 DOI: 10.7717/peerj.1484] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2015] [Accepted: 11/18/2015] [Indexed: 02/05/2023] Open
Abstract
The Gram-negative bacterium Vibrio tapetis is known as the causative agent of Brown Ring Disease (BRD) in the Manila clam Venerupis (=Ruditapes) philippinarum. This bivalve is the second most important species produced in aquaculture and has a high commercial value. In spite of the development of several molecular methods, no survey has been yet achieved to rapidly quantify the bacterium in the clam. In this study, we developed a Taqman real-time PCR assay targeting virB4 gene for accurate and quantitative identification of V. tapetis strains pathogenic to clams. Sensitivity and reproducibility of the method were assessed using either filtered sea water or extrapallial fluids of clam injected with the CECT4600(T) V. tapetis strain. Quantification curves of V. tapetis strain seeded in filtered seawater (FSW) or extrapallial fluids (EF) samples were equivalent showing reliable qPCR efficacies. With this protocol, we were able to specifically detect V. tapetis strains down to 1.125 10(1) bacteria per mL of EF or FSW, taking into account the dilution factor used for appropriate template DNA preparation. This qPCR assay allowed us to monitor V. tapetis load both experimentally or naturally infected Manila clams. This technique will be particularly useful for monitoring the kinetics of massive infections by V. tapetis and for designing appropriate control measures for aquaculture purposes.
Collapse
Affiliation(s)
- Adeline Bidault
- Laboratoire des Sciences de l’Environnement Marin (LEMAR), UMR 6539 UBO/CNRS/IRD/Ifremer, Université de Bretagne Occidentale, Plouzané, France
| | - Gaëlle G. Richard
- Laboratoire des Sciences de l’Environnement Marin (LEMAR), UMR 6539 UBO/CNRS/IRD/Ifremer, Université de Bretagne Occidentale, Plouzané, France
| | - Cédric Le Bris
- Laboratoire des Sciences de l’Environnement Marin (LEMAR), UMR 6539 UBO/CNRS/IRD/Ifremer, Université de Bretagne Occidentale, Plouzané, France
| | - Christine Paillard
- Laboratoire des Sciences de l’Environnement Marin (LEMAR), UMR 6539 UBO/CNRS/IRD/Ifremer, Université de Bretagne Occidentale, Plouzané, France
| |
Collapse
|
30
|
Le Bris C, Richard G, Paillard C, Lambert C, Seguineau C, Gauthier O, Pernet F, Guérard F. Immune responses of phenoloxidase and superoxide dismutase in the manila clam Venerupis philippinarum challenged with Vibrio tapetis--Part I: Spatio-temporal evolution of enzymes' activities post-infection. Fish Shellfish Immunol 2015; 42:16-24. [PMID: 25449703 DOI: 10.1016/j.fsi.2014.10.021] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/17/2014] [Revised: 10/17/2014] [Accepted: 10/17/2014] [Indexed: 02/08/2023]
Abstract
Manila clams, Venerupis philippinarum (Adams and Reeve, 1850), were experimentally challenged with two Vibrio tapetis strains: CECT4600T, the causative agent of Brown Ring Disease (BRD); and LP2 supposedly non-pathogenic in V. philippinarum. Changes in phenoloxidase (PO) and superoxide dismutase (SOD), two major enzymes involved in immunity, were studied in two tissues, the mantle and hemolymph for 30 days after infection in the extrapallial cavity. Bacterial infection in V. philippinarum resulted in modulation of PO and SOD activities that was both tissue- and time-dependent. A response at early times was detected in the mantle and was associated with significant increases in PO and SOD activities in LP2- and CECT4600T-challenged clams 36 h post injection. This first response in the mantle could be explained by the proximity to the injection region (extrapallial cavity). In the hemolymph the response occurred at later times and was associated with an increase in PO activity and a decrease in SOD activity. As hemolymph is a circulating fluid, this response delay could be due to an "integration time" needed by the organism to counteract the infection. Injections also impacted PO and SOD activities in both tissues and confirmed a difference in pathogenicity between the two V. tapetis strains.
Collapse
Affiliation(s)
- Cédric Le Bris
- UMR 6539 CNRS UBO IRD IFREMER, LEMAR - IUEM - UBO, Institut Universitaire Européen de la Mer, Université de Bretagne Occidentale, Technopôle Brest-Iroise - Rue Dumont d'Urville, 29280 Plouzané, France.
| | - Gaëlle Richard
- UMR 6539 CNRS UBO IRD IFREMER, LEMAR - IUEM - UBO, Institut Universitaire Européen de la Mer, Université de Bretagne Occidentale, Technopôle Brest-Iroise - Rue Dumont d'Urville, 29280 Plouzané, France
| | - Christine Paillard
- UMR 6539 CNRS UBO IRD IFREMER, LEMAR - IUEM - UBO, Institut Universitaire Européen de la Mer, Université de Bretagne Occidentale, Technopôle Brest-Iroise - Rue Dumont d'Urville, 29280 Plouzané, France
| | - Christophe Lambert
- UMR 6539 CNRS UBO IRD IFREMER, LEMAR - IUEM - UBO, Institut Universitaire Européen de la Mer, Université de Bretagne Occidentale, Technopôle Brest-Iroise - Rue Dumont d'Urville, 29280 Plouzané, France
| | - Catherine Seguineau
- UMR 6539 CNRS UBO IRD IFREMER, LEMAR - IUEM - UBO, Ifremer, Laboratoire de Physiologie des Invertébrés, Technopôle Brest-Iroise BP 70, 29280 Plouzané, France
| | - Olivier Gauthier
- UMR 6539 CNRS UBO IRD IFREMER, LEMAR - IUEM - UBO, Institut Universitaire Européen de la Mer, Université de Bretagne Occidentale, Technopôle Brest-Iroise - Rue Dumont d'Urville, 29280 Plouzané, France
| | - Fabrice Pernet
- UMR 6539 CNRS UBO IRD IFREMER, LEMAR - IUEM - UBO, Ifremer, Laboratoire de Physiologie des Invertébrés, Technopôle Brest-Iroise BP 70, 29280 Plouzané, France
| | - Fabienne Guérard
- UMR 6539 CNRS UBO IRD IFREMER, LEMAR - IUEM - UBO, Institut Universitaire Européen de la Mer, Université de Bretagne Occidentale, Technopôle Brest-Iroise - Rue Dumont d'Urville, 29280 Plouzané, France
| |
Collapse
|
31
|
García-Bueno N, Decottignies P, Turpin V, Dumay J, Paillard C, Stiger-Pouvreau V, Kervarec N, Pouchus YF, Marín-Atucha AA, Fleurence J. Seasonal antibacterial activity of two red seaweeds,PalmariapalmataandGrateloupia turuturu, on European abalone pathogenVibrio harveyi. Aquat Living Resour 2014. [DOI: 10.1051/alr/2014009] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
|
32
|
Madec S, Pichereau V, Jacq A, Paillard M, Boisset C, Guérard F, Paillard C, Nicolas JL. Characterization of the secretomes of two vibrios pathogenic to mollusks. PLoS One 2014; 9:e113097. [PMID: 25401495 PMCID: PMC4234667 DOI: 10.1371/journal.pone.0113097] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2014] [Accepted: 10/19/2014] [Indexed: 02/05/2023] Open
Abstract
Vibrio tapetis causes the brown ring disease in the Japanese clam Ruditapes philippinarum while Vibrio aestuarianus is associated with massive oyster mortalities. As extracellular proteins are often associated with the virulence of pathogenic bacteria, we undertook a proteomic approach to characterize the secretomes of both vibrios. The extracellular proteins (ECPs) of both species were fractionated by SEC-FPLC and in vitro assays were performed to measure the effects of each fraction on hemocyte cellular parameters (phagocytosis and adhesion). Fractions showing a significant effect were subjected to SDS-PAGE, and proteins were identified by nano LC-MS/MS. 45 proteins were identified for V. aestuarianus and 87 for V. tapetis. Most of them belonged to outer membrane or were periplasmic, including porins or adhesins that were already described as virulence factors in other bacterial species. Others were transporter components, flagella proteins, or proteins of unknown function (14 and 15 respectively). Interestingly, for V. aestuarianus, we noted the secretion of 3 extracellular enzymes including the Vam metalloprotease and two other enzymes (one putative lipase and one protease). For V. tapetis, we identified five extracellular enymes, i.e. two different endochitinases, one protease, one lipase and an adhesin. A comparison of both secretomes also showed that only the putative extracellular lipase was common to both secretomes, underscoring the difference in pathogenicity mechanisms between these two species. Overall, these results characterize for the first time the secretomes of these two marine pathogenic vibrios and constitute a useful working basis to further analyze the contribution of specific proteins in the virulence mechanisms of these species.
Collapse
Affiliation(s)
- Stéphanie Madec
- Laboratoire Universitaire de Biodiversité et Ecologie Microbienne (EA3882), SFR48 ScInBios, Université de Bretagne Occidentale (UBO), UEB, ESIAB, Technopôle Brest Iroise, 29280, Plouzané, France
| | - Vianney Pichereau
- Laboratoire des Sciences de l’Environnement Marin, UMR 6539 UBO/CNRS/IRD/Ifremer, Université de Bretagne Occidentale (UBO), Institut Universitaire Européen de la Mer, Technopôle Brest Iroise, 29280, Plouzané, France
| | - Annick Jacq
- Institut de Génétique et de Microbiologie, UMR8621, CNRS-Université Paris-Sud, 91405, Orsay, France
| | - Mathieu Paillard
- Laboratoire des Sciences de l’Environnement Marin, UMR 6539 UBO/CNRS/IRD/Ifremer, Université de Bretagne Occidentale (UBO), Institut Universitaire Européen de la Mer, Technopôle Brest Iroise, 29280, Plouzané, France
| | - Claire Boisset
- Centre de Recherche sur les macromolécules végétales, CERMAV-CNRS, BP53, 38041 Grenoble, France
| | - Fabienne Guérard
- Laboratoire des Sciences de l’Environnement Marin, UMR 6539 UBO/CNRS/IRD/Ifremer, Université de Bretagne Occidentale (UBO), Institut Universitaire Européen de la Mer, Technopôle Brest Iroise, 29280, Plouzané, France
| | - Christine Paillard
- Laboratoire des Sciences de l’Environnement Marin, UMR 6539 UBO/CNRS/IRD/Ifremer, Université de Bretagne Occidentale (UBO), Institut Universitaire Européen de la Mer, Technopôle Brest Iroise, 29280, Plouzané, France
| | - Jean-Louis Nicolas
- Laboratoire des Sciences de l’Environnement Marin, UMR 6539 UBO/CNRS/IRD/Ifremer, Université de Bretagne Occidentale (UBO), Institut Universitaire Européen de la Mer, Technopôle Brest Iroise, 29280, Plouzané, France
| |
Collapse
|
33
|
Allam B, Pales Espinosa E, Tanguy A, Jeffroy F, Le Bris C, Paillard C. Transcriptional changes in Manila clam (Ruditapes philippinarum) in response to Brown Ring Disease. Fish Shellfish Immunol 2014; 41:2-11. [PMID: 24882017 DOI: 10.1016/j.fsi.2014.05.022] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/05/2014] [Revised: 05/12/2014] [Accepted: 05/15/2014] [Indexed: 02/05/2023]
Abstract
Brown Ring Disease (BRD) is a bacterial infection affecting the economically-important clam Ruditapes philippinarum. The disease is caused by a bacterium, Vibrio tapetis, that colonizes the edge of the mantle, altering the biomineralization process and normal shell growth. Altered organic shell matrices accumulate on the inner face of the shell leading to the formation of the typical brown ring in the extrapallial space (between the mantle and the shell). Even though structural and functional changes have been described in solid (mantle) and fluid (hemolymph and extrapallial fluids) tissues from infected clams, the underlying molecular alterations and responses remain largely unknown. This study was designed to gather information on clam molecular responses to the disease and to compare focal responses at the site of the infection (mantle and extrapallial fluid) with systemic (hemolymph) responses. To do so, we designed and produced a Manila clam expression oligoarray (15K Agilent) using transcriptomic data available in public databases and used this platform to comparatively assess transcriptomic changes in mantle, hemolymph and extrapallial fluid of infected clams. Results showed significant regulation in diseased clams of molecules involved in pathogen recognition (e.g. lectins, C1q domain-containing proteins) and killing (defensin), apoptosis regulation (death-associated protein, bcl-2) and in biomineralization (shell matrix proteins, perlucin, galaxin, chitin- and calcium-binding proteins). While most changes in response to the disease were tissue-specific, systemic alterations included co-regulation in all 3 tested tissues of molecules involved in microbe recognition and killing (complement-related factors, defensin). These results provide a first glance at molecular alterations and responses caused by BRD and identify targets for future functional investigations.
Collapse
Affiliation(s)
- Bassem Allam
- School of Marine and Atmospheric Sciences, Stony Brook University, Stony Brook, NY, USA.
| | | | - Arnaud Tanguy
- Station Biologique de Roscoff, UPMC-CNRS, Roscoff, France
| | - Fanny Jeffroy
- Institut Universitaire Européen de la Mer, Plouzané, France
| | - Cedric Le Bris
- Institut Universitaire Européen de la Mer, Plouzané, France
| | | |
Collapse
|
34
|
Cardinaud M, Barbou A, Capitaine C, Bidault A, Dujon AM, Moraga D, Paillard C. Vibrio harveyi adheres to and penetrates tissues of the European abalone Haliotis tuberculata within the first hours of contact. Appl Environ Microbiol 2014; 80:6328-33. [PMID: 25107972 PMCID: PMC4178649 DOI: 10.1128/aem.01036-14] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023] Open
Abstract
Vibrio harveyi is a marine bacterial pathogen responsible for episodic epidemics generally associated with massive mortalities in many marine organisms, including the European abalone Haliotis tuberculata. The aim of this study was to identify the portal of entry and the dynamics of infection of V. harveyi in the European abalone. The results indicate that the duration of contact between V. harveyi and the European abalone influences the mortality rate and precocity. Immediately after contact, the epithelial and mucosal area situated between the gills and the hypobranchial gland was colonized by V. harveyi. Real-time PCR analyses and culture quantification of a green fluorescent protein-tagged strain of V. harveyi in abalone tissues revealed a high density of bacteria adhering to and then penetrating the whole gill-hypobranchial gland tissue after 1 h of contact. V. harveyi was also detected in the hemolymph of a significant number of European abalones after 3 h of contact. In conclusion, this article shows that a TaqMan real-time PCR assay is a powerful and useful technique for the detection of a marine pathogen such as V. harveyi in mollusk tissue and for the study of its infection dynamics. Thus, we have revealed that the adhesion and then the penetration of V. harveyi in European abalone organs begin in the first hours of contact. We also hypothesize that the portal of entry of V. harveyi in the European abalone is the area situated between the gills and the hypobranchial gland.
Collapse
Affiliation(s)
- Marion Cardinaud
- UMR 6539-Laboratoire des Sciences de l'Environnement Marin (LEMAR), Institut Universitaire Européen de la Mer (IUEM), Université de Bretagne Occidentale (UBO), CNRS, IRD, Ifremer, Technopôle Brest Iroise, Plouzané, France
| | - Annaïck Barbou
- UMR 6539-Laboratoire des Sciences de l'Environnement Marin (LEMAR), Institut Universitaire Européen de la Mer (IUEM), Université de Bretagne Occidentale (UBO), CNRS, IRD, Ifremer, Technopôle Brest Iroise, Plouzané, France
| | - Carole Capitaine
- UMR 6539-Laboratoire des Sciences de l'Environnement Marin (LEMAR), Institut Universitaire Européen de la Mer (IUEM), Université de Bretagne Occidentale (UBO), CNRS, IRD, Ifremer, Technopôle Brest Iroise, Plouzané, France
| | - Adeline Bidault
- UMR 6539-Laboratoire des Sciences de l'Environnement Marin (LEMAR), Institut Universitaire Européen de la Mer (IUEM), Université de Bretagne Occidentale (UBO), CNRS, IRD, Ifremer, Technopôle Brest Iroise, Plouzané, France
| | - Antoine Marie Dujon
- UMR 6539-Laboratoire des Sciences de l'Environnement Marin (LEMAR), Institut Universitaire Européen de la Mer (IUEM), Université de Bretagne Occidentale (UBO), CNRS, IRD, Ifremer, Technopôle Brest Iroise, Plouzané, France
| | - Dario Moraga
- UMR 6539-Laboratoire des Sciences de l'Environnement Marin (LEMAR), Institut Universitaire Européen de la Mer (IUEM), Université de Bretagne Occidentale (UBO), CNRS, IRD, Ifremer, Technopôle Brest Iroise, Plouzané, France
| | - Christine Paillard
- UMR 6539-Laboratoire des Sciences de l'Environnement Marin (LEMAR), Institut Universitaire Européen de la Mer (IUEM), Université de Bretagne Occidentale (UBO), CNRS, IRD, Ifremer, Technopôle Brest Iroise, Plouzané, France
| |
Collapse
|
35
|
Paillard C, Jean F, Ford SE, Powell EN, Klinck JM, Hofmann EE, Flye-sainte-marie J. A theoretical individual-based model of Brown Ring Disease in Manila clams, Venerupis philippinarum. Journal of Sea Research 2014; 91:15-34. [DOI: 10.1016/j.seares.2014.03.005] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
|
36
|
Meistertzheim AL, Calvès I, Roussel V, Van Wormhoudt A, Laroche J, Huchette S, Paillard C. New genetic markers to identify European resistant abalone to vibriosis revealed by high-resolution melting analysis, a sensitive and fast approach. Mar Biol 2014. [DOI: 10.1007/s00227-014-2470-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
|
37
|
Baztan J, Carrasco A, Chouinard O, Cleaud M, Gabaldon JE, Huck T, Jaffrès L, Jorgensen B, Miguelez A, Paillard C, Vanderlinden JP. Protected areas in the Atlantic facing the hazards of micro-plastic pollution: first diagnosis of three islands in the Canary Current. Mar Pollut Bull 2014; 80:302-11. [PMID: 24433999 DOI: 10.1016/j.marpolbul.2013.12.052] [Citation(s) in RCA: 82] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/18/2013] [Revised: 12/21/2013] [Accepted: 12/23/2013] [Indexed: 02/05/2023]
Abstract
Coastal zones and the biosphere as a whole show signs of cumulative degradation due to the use and disposal of plastics. To better understand the manifestation of plastic pollution in the Atlantic Ocean, we partnered with local communities to determine the concentrations of micro-plastics in 125 beaches on three islands in the Canary Current: Lanzarote, La Graciosa, and Fuerteventura. We found that, in spite of being located in highly-protected natural areas, all beaches in our study area are exceedingly vulnerable to micro-plastic pollution, with pollution levels reaching concentrations greater than 100 g of plastic in 1l of sediment. This paper contributes to ongoing efforts to develop solutions to plastic pollution by addressing the questions: (i) Where does this pollution come from?; (ii) How much plastic pollution is in the world's oceans and coastal zones?; (iii) What are the consequences for the biosphere?; and (iv) What are possible solutions?
Collapse
Affiliation(s)
- Juan Baztan
- Observatoire de Versailles Saint-Quentin-en-Yvelines, 11 boulevard d'Alembert, 78280 Guyancourt, France; Marine Sciences For Society, Hurtado 7, 08023 Barcelona, Spain.
| | - Ana Carrasco
- Observatorio Reserva de Biosfera, Cabildo de Lanzarote, Fred Olsen s/n, 35500 Arrecife, Spain
| | - Omer Chouinard
- Université de Moncton, 18 Avenue Antonine-Maillet, Moncton, NB E1A 3E9, Canada; Marine Sciences For Society, Hurtado 7, 08023 Barcelona, Spain
| | - Muriel Cleaud
- Maison des Minéraux, Rue Cap de la Chèvre, 29160 Crozon, France; Marine Sciences For Society, Hurtado 7, 08023 Barcelona, Spain
| | - Jesús E Gabaldon
- Dynamical Systems, Gurb 17, 08500 Vic, Spain; Marine Sciences For Society, Hurtado 7, 08023 Barcelona, Spain
| | - Thierry Huck
- UBO-CNRS-LPO, UFR Sciences F308, 6 av. Le Gorgeu, 29238 Brest, France; Marine Sciences For Society, Hurtado 7, 08023 Barcelona, Spain
| | - Lionel Jaffrès
- Le Théâtre du Grain, Le Maquis, 12 Rue Victor Eusen, 29200 Brest, France
| | - Bethany Jorgensen
- The University of Maine, Orono, ME 04469, United States; Marine Sciences For Society, Hurtado 7, 08023 Barcelona, Spain
| | - Aquilino Miguelez
- Observatorio Reserva de Biosfera, Cabildo de Lanzarote, Fred Olsen s/n, 35500 Arrecife, Spain
| | - Christine Paillard
- IUEM-CNRS-LEMAR, Institut Universitaire Européen de la Mer, rue Dumont d'Urville, 29280 Plouzané, France; Marine Sciences For Society, Hurtado 7, 08023 Barcelona, Spain
| | - Jean-Paul Vanderlinden
- Observatoire de Versailles Saint-Quentin-en-Yvelines, 11 boulevard d'Alembert, 78280 Guyancourt, France; Marine Sciences For Society, Hurtado 7, 08023 Barcelona, Spain
| |
Collapse
|
38
|
Le Bris C, Lepretre M, Paillard C, Guérard F. Characterization of a laccase-like activity in the hemolymph of the abalone Haliotis tuberculata. Aquaculture 2014. [DOI: 10.1016/j.aquaculture.2013.12.003] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
|
39
|
Desriac F, Le Chevalier P, Brillet B, Leguerinel I, Thuillier B, Paillard C, Fleury Y. Exploring the hologenome concept in marine bivalvia: haemolymph microbiota as a pertinent source of probiotics for aquaculture. FEMS Microbiol Lett 2014; 350:107-16. [PMID: 24286558 DOI: 10.1111/1574-6968.12308] [Citation(s) in RCA: 53] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2013] [Revised: 10/02/2013] [Accepted: 10/17/2013] [Indexed: 02/05/2023] Open
Abstract
Haemolymph-associated microbiota of marine bivalves was explored for antibacterial activity against important aquaculture pathogens. A collection of 843 strains were cultured from the haemolymph of four bivalve species (Crassostrea gigas, Mytilus edulis, Pecten maximus and Tapes rhomboides) collected by deep-sea diving in the Glenan Archipelago (France). Cell-free culture supernatants were investigated for antibacterial activity using the well-diffusion assay. About 3% of haemolymph-associated cultivable bacteria displayed antibacterial activity toward Gram-negative pathogens. Among the active bacteria, Pseudoalteromonas strains exhibited the highest antibacterial activity. The cell-free culture supernatant of one of them, named hCg-51, was able to inhibit the growth of bacterial pathogens even after drastic dilution (1 : 1024). Hemocyte survival was not significantly altered in the presence of the haemolymph-associated strains assayed. Moreover, a dose-dependent beneficial effect on hemocyte survival rates was observed with the hCg-51 strain. These results suggest that haemolymph microbiota may participate in bivalve protection and therefore confer a health benefit on the host. As a result, the results highlight bivalve haemolymph microbiota as a promising novel source for aquaculture probiotics. This work also gives a first insight into the contribution of the haemolymph-associated microbiota as part of the bivalve 'hologenome'.
Collapse
Affiliation(s)
- Florie Desriac
- Université de Brest, EA3882, Laboratoire Universitaire de Biodiversité et Ecologie Microbienne (LUBEM), IFR148 ScInBioS, Institut Universitaire de Technologie, Quimper, France
| | | | | | | | | | | | | |
Collapse
|
40
|
Cardinaud M, Offret C, Huchette S, Moraga D, Paillard C. The impacts of handling and air exposure on immune parameters, gene expression, and susceptibility to vibriosis of European abalone Haliotis tuberculata. Fish Shellfish Immunol 2014; 36:1-8. [PMID: 24215911 DOI: 10.1016/j.fsi.2013.09.034] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2012] [Revised: 09/26/2013] [Accepted: 09/28/2013] [Indexed: 02/08/2023]
Abstract
Wild or farmed abalone are regularly exposed to stressors, such as air exposure and handling. Immune and transcriptional responses as well as susceptibility to vibriosis of sexually mature or immature European abalone acclimated at 16 or 19 °C were determined following handling or air exposure. Hemocyte density and H2O2 production increased while hemocyte viability and phagocytic index decreased following handling. Air exposure induces a decrease of hemocyte density and phagocytic index. Measurement of the expression of genes implicated in general metabolic, immunological and stress responses in gills, foot-muscle and hemocytes by real time q-PCR suggested that both stressors lead to a metabolic rate depression, characterized by a general inhibition of transcription. Finally, following handling a Vibrio harveyi challenge enhances almost 100% mortality of sexually immature animals at 19 °C while it has been previously demonstrated that only mature are susceptible to vibriosis.
Collapse
Affiliation(s)
- Marion Cardinaud
- UMR 6539 - LEMAR (Laboratoire des Sciences de l'Environnement Marin), IUEM (Institut Universitaire Européen de la Mer), Université de Bretagne Occidentale (UBO), CNRS, IRD, Ifremer, Technopôle Brest Iroise, 29280 Plouzané, France.
| | - Clément Offret
- UMR 6539 - LEMAR (Laboratoire des Sciences de l'Environnement Marin), IUEM (Institut Universitaire Européen de la Mer), Université de Bretagne Occidentale (UBO), CNRS, IRD, Ifremer, Technopôle Brest Iroise, 29280 Plouzané, France
| | - Sylvain Huchette
- UMR 6539 - LEMAR (Laboratoire des Sciences de l'Environnement Marin), IUEM (Institut Universitaire Européen de la Mer), Université de Bretagne Occidentale (UBO), CNRS, IRD, Ifremer, Technopôle Brest Iroise, 29280 Plouzané, France; France Haliotis, Kerazan, Lilia, 29880 Plouguerneau, France
| | - Dario Moraga
- UMR 6539 - LEMAR (Laboratoire des Sciences de l'Environnement Marin), IUEM (Institut Universitaire Européen de la Mer), Université de Bretagne Occidentale (UBO), CNRS, IRD, Ifremer, Technopôle Brest Iroise, 29280 Plouzané, France.
| | - Christine Paillard
- UMR 6539 - LEMAR (Laboratoire des Sciences de l'Environnement Marin), IUEM (Institut Universitaire Européen de la Mer), Université de Bretagne Occidentale (UBO), CNRS, IRD, Ifremer, Technopôle Brest Iroise, 29280 Plouzané, France.
| |
Collapse
|
41
|
Le Bris C, Paillard C, Stiger-Pouvreau V, Guérard F. Laccase-like activity in the hemolymph of Venerupis philippinarum: characterization and kinetic properties. Fish Shellfish Immunol 2013; 35:1804-12. [PMID: 24075997 DOI: 10.1016/j.fsi.2013.09.009] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2013] [Revised: 08/28/2013] [Accepted: 09/02/2013] [Indexed: 02/05/2023]
Abstract
The phenoloxidases (POs) include tyrosinases (EC 1.14.18.1), catecholases (EC 1.10.3.1) and laccases (EC 1.10.3.2) and are known to play a role in the immune defences of many invertebrates. For the Manila clam, Venerupis philippinarum, the exact role is not known, especially with regard to defences against Brown Ring Disease (BRD), which leads to high mortalities along European coasts. In order to understand the role and functioning of PO in V. philippinarum, the first step, and aim of this study, was to biochemically characterize the PO activity in the circulating hemolymph. Various substrates were tested and the common PO substrates L-DOPA, Catechol and dopamine exhibited good affinity with the enzyme and consequent low K(m) values (3.75, 1.97, 4.91 mM, respectively). A single tyrosinase-specific substrate, PHPPA, was oxidized, but the affinity for it was low (K(m) = 47.33 mM). Three tested laccase-specific substrates were oxidized by V. philippinarum PO (PPD, OPD and hydroquinone) and affinity was higher than for PHPPA. The results obtained with the substrate were confirmed by the use of different inhibitors: CTAB, a laccase-specific inhibitor inhibited PO activity greatly but not completely, whereas 4-Hr, specific to catecholases and tyrosinases, inhibited PO activity to a lesser extent. The results lead us to conclude that V. philippinarum PO activity in the circulating hemolymph, is mainly a laccase-like activity but there is also a smaller-scale tyrosinase-like activity. The inhibition mechanisms were also determined using dose-response substrate concentration for an inhibitor concentration equal or close to the IC50. Optimal conditions for the enzyme activity were also determined using L-DOPA as substrate, showing that its optimal temperature and pH are around 40 °C and 8.4 respectively. The enzyme is denatured for temperatures above 50 °C.
Collapse
Affiliation(s)
- Cédric Le Bris
- UMR 6539 CNRS UBO IRD IFREMER, LEMAR-IUEM-UBO, Institut Universitaire Européen de la Mer, Université de Bretagne Occidentale, Technopôle Brest Iroise - rue Dumont d'Urville, 29280 Plouzané, France.
| | | | | | | |
Collapse
|
42
|
Pichon D, Cudennec B, Huchette S, Djediat C, Renault T, Paillard C, Auzoux-Bordenave S. Characterization of abalone Haliotis tuberculata-Vibrio harveyi interactions in gill primary cultures. Cytotechnology 2013; 65:759-72. [PMID: 23756730 PMCID: PMC3967618 DOI: 10.1007/s10616-013-9583-1] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2013] [Accepted: 05/08/2013] [Indexed: 02/08/2023] Open
Abstract
The decline of European abalone Haliotis tuberculata populations has been associated with various pathogens including bacteria of the genus Vibrio. Following the summer mortality outbreaks reported in France between 1998 and 2000, Vibrio harveyi strains were isolated from moribund abalones, allowing in vivo and in vitro studies on the interactions between abalone H. tuberculata and V. harveyi. This work reports the development of primary cell cultures from abalone gill tissue, a target tissue for bacterial colonisation, and their use for in vitro study of host cell-V. harveyi interactions. Gill cells originated from four-day-old explant primary cultures were successfully sub-cultured in multi-well plates and maintained in vitro for up to 24 days. Cytological parameters, cell morphology and viability were monitored over time using flow cytometry analysis and semi-quantitative assay (XTT). Then, gill cell cultures were used to investigate in vitro the interactions with V. harveyi. The effects of two bacterial strains were evaluated on gill cells: a pathogenic bacterial strain ORM4 which is responsible for abalone mortalities and LMG7890 which is a non-pathogenic strain. Cellular responses of gill cells exposed to increasing concentrations of bacteria were evaluated by measuring mitochondrial activity (XTT assay) and phenoloxidase activity, an enzyme which is strongly involved in immune response. The ability of gill cells to phagocyte GFP-tagged V. harveyi was evaluated by flow cytometry and gill cells-V. harveyi interactions were characterized using fluorescence microscopy and transmission electron microscopy. During phagocytosis process we evidenced that V. harveyi bacteria induced significant changes in gill cells metabolism and immune response. Together, the results showed that primary cell cultures from abalone gills are suitable for in vitro study of host-pathogen interactions, providing complementary assays to in vivo experiments.
Collapse
Affiliation(s)
- Delphine Pichon
- Station de Biologie Marine, Muséum National d'Histoire Naturelle, DMPA, UMR BOREA 7208 CNRS/MNHN/IRD/UPMC, 29900, Concarneau, France,
| | | | | | | | | | | | | |
Collapse
|
43
|
Jeffroy F, Brulle F, Paillard C. Differential expression of genes involved in immunity and biomineralization during Brown Ring Disease development and shell repair in the Manila clam, Ruditapes philippinarum. J Invertebr Pathol 2013; 113:129-36. [PMID: 23500956 DOI: 10.1016/j.jip.2013.03.001] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2012] [Revised: 02/26/2013] [Accepted: 03/05/2013] [Indexed: 02/05/2023]
Abstract
Severe drop in Manila clams production in French aquacultured fields since the end of the 1980's is associated to Brown Ring Disease (BRD). This disease, caused by the bacteria Vibrio tapetis, is characterized by specific symptoms on the inner face of the shell. Diseased animals develop conchiolin deposit to enrobe bacteria and form new calcified layers on the shell. Suppression subtractive hybridization was performed to identify genes differentially expressed during the early interaction of V. tapetis and Ruditapes philippinarum. Results revealed 301 unique genes differentially expressed during V. tapetis challenge. Several candidates involved in immune and biomineralization processes were selected from libraries. Transcriptional expression of selected candidates was determined in hemolymph and mantle tissues and revealed spatial and temporal variations. At 56 days after infection, when clams were in phase of shell repair, transcripts of galectin and ferritin in hemocytes showed higher expression. Ca-like and serpin transcripts were specifically expressed in mantle and could contribute to defense against BRD.
Collapse
|
44
|
Schikorski D, Renault T, Paillard C, Bidault-toffin A, Tourbiez D, Saulnier D. Development of TaqMan real-time PCR assays for monitoring Vibrio harveyi infection and a plasmid harbored by virulent strains in European abalone Haliotis tuberculata aquaculture. Aquaculture 2013; 392-395:106-12. [DOI: 10.1016/j.aquaculture.2013.02.005] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
|
45
|
El Bour M, Dellali M, Boukef I, Lakhal F, Mraouna R, El Hili HA, Paillard C, Klena J. First assessment of Perkinsosis and brown ring disease co-infection in Ruditapes decussatus in the North Lake of Tunis (southern Mediterranean Sea). J Mar Biol Ass 2012; 92:1579-84. [DOI: 10.1017/s0025315411001846] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
Carpet shell clam populations on the Tunisian coastline are susceptible to several microbial pathogen challenges. In this study we report the results of five years' surveillance, conducted from January 2004 till June 2009, for detection of Perkinsosis and brown ring disease (BRD). The survey covered three sites of natural populations of Ruditapes decussatus in a Tunisian lagoon, the North Lake of Tunis. Perkinsosis was detected preferentially in winter periods from the external and marine site, BRD was detected more frequently in the summer periods in a more proximal collection site (in the lake) and was positively correlated with concentrations of heterotrophic Vibrio sp. Our results suggest that several factors other than temperature and salinity might explain spatial distribution variability and natural intensities for these infections in carpet shell clam populations.
Collapse
|
46
|
Brulle F, Jeffroy F, Madec S, Nicolas JL, Paillard C. Transcriptomic analysis of Ruditapes philippinarum hemocytes reveals cytoskeleton disruption after in vitro Vibrio tapetis challenge. Dev Comp Immunol 2012; 38:368-76. [PMID: 22450167 DOI: 10.1016/j.dci.2012.03.003] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/11/2012] [Revised: 02/28/2012] [Accepted: 03/06/2012] [Indexed: 02/08/2023]
Abstract
The Manila clam, Ruditapes philippinarum, is an economically-important, commercial shellfish; harvests are diminished in some European waters by a pathogenic bacterium, Vibrio tapetis, that causes Brown Ring disease. To identify molecular characteristics associated with susceptibility or resistance to Brown Ring disease, Suppression Subtractive Hybridization (SSH) analyzes were performed to construct cDNA libraries enriched in up- or down-regulated transcripts from clam immune cells, hemocytes, after a 3-h in vitro challenge with cultured V. tapetis. Nine hundred and ninety eight sequences from the two libraries were sequenced, and an in silico analysis identified 235 unique genes. BLAST and "Gene ontology" classification analyzes revealed that 60.4% of the Expressed Sequence Tags (ESTs) have high similarities with genes involved in various physiological functions, such as immunity, apoptosis and cytoskeleton organization; whereas, 39.6% remain unidentified. From the 235 unique genes, we selected 22 candidates based upon physiological function and redundancy in the libraries. Then, Real-Time PCR analysis identified 3 genes related to cytoskeleton organization showing significant variation in expression attributable to V. tapetis exposure. Disruption in regulation of these genes is consistent with the etiologic agent of Brown Ring disease in Manila clams.
Collapse
Affiliation(s)
- Franck Brulle
- Laboratoire des Sciences de l'Environnement Marin (LEMAR), UMR CNRS 6539, IUEM, Technopole Brest-Iroise, 29280 Plouzané, France
| | | | | | | | | |
Collapse
|
47
|
Baudoux AC, Hendrix RW, Lander GC, Bailly X, Podell S, Paillard C, Johnson JE, Potter CS, Carragher B, Azam F. Genomic and functional analysis of Vibrio phage SIO-2 reveals novel insights into ecology and evolution of marine siphoviruses. Environ Microbiol 2012; 14:2071-86. [PMID: 22225728 PMCID: PMC3338904 DOI: 10.1111/j.1462-2920.2011.02685.x] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
We report on a genomic and functional analysis of a novel marine siphovirus, the Vibrio phage SIO-2. This phage is lytic for related Vibrio species of great ecological interest including the broadly antagonistic bacterium Vibrio sp. SWAT3 as well as notable members of the Harveyi clade (V.harveyi ATTC BAA-1116 and V.campbellii ATCC 25920). Vibrio phage SIO-2 has a circularly permuted genome of 80598 bp, which displays unusual features. This genome is larger than that of most known siphoviruses and only 38 of the 116 predicted proteins had homologues in databases. Another divergence is manifest by the origin of core genes, most of which share robust similarities with unrelated viruses and bacteria spanning a wide range of phyla. These core genes are arranged in the same order as in most bacteriophages but they are unusually interspaced at two places with insertions of DNA comprising a high density of uncharacterized genes. The acquisition of these DNA inserts is associated with morphological variation of SIO-2 capsid, which assembles as a large (80 nm) shell with a novel T=12 symmetry. These atypical structural features confer on SIO-2 a remarkable stability to a variety of physical, chemical and environmental factors. Given this high level of functional and genomic novelty, SIO-2 emerges as a model of considerable interest in ecological and evolutionary studies.
Collapse
Affiliation(s)
- A-C Baudoux
- Scripps Institution of Oceanography, Marine Biology Research Division, University of California San Diego, La Jolla, CA 92093, USA.
| | | | | | | | | | | | | | | | | | | |
Collapse
|
48
|
Jeffroy F, Paillard C. Involvement of nitric oxide in the in vitro interaction between Manila clam, Ruditapes philippinarum, hemocytes and the bacterium Vibrio tapetis. Fish Shellfish Immunol 2011; 31:1137-41. [PMID: 22019825 DOI: 10.1016/j.fsi.2011.10.008] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/28/2011] [Revised: 09/15/2011] [Accepted: 10/04/2011] [Indexed: 02/08/2023]
Abstract
The Manila clam, Ruditapes philippinarum can become infected by the bacterium Vibrio tapetis which causing the Brown Ring Disease along North European Atlantic coasts. Variations in clam immune parameters have been reported in clam challenged with V. tapetis but no studies have been done on Nitric Oxide (NO) production. NO is a toxic agent to pathogens produced mostly by immune cells such as hemocytes in invertebrates. In this study, we demonstrated that NO production in hemolymph and extrapallial fluid of clams is dose dependent and increases with incubation time with V. tapetis. Moreover, the augmentation of NO production seems to be directly correlated to cell rounding and to the loss of pseudopods-forming capacity of hemocytes during the infection process.
Collapse
Affiliation(s)
- Fanny Jeffroy
- IUEM, UMR CNRS 6539, Technopôle Brest Iroise, 29280 Plouzané, France
| | | |
Collapse
|
49
|
Bour ME, Dellali M, Boukef I, Lakhal F, Mraouna R, Hili HAE, Paillard C, Klena J. Occurrence of Brown Ring Disease in Carpet Shell ClamsRuditapes decussatusfrom the Gulf of Gabes (Tunisia, Central Mediterranean Sea). Journal of Shellfish Research 2011. [DOI: 10.2983/035.030.0320] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
|
50
|
Marie B, Trinkler N, Zanella-Cleon I, Guichard N, Becchi M, Paillard C, Marin F. Proteomic identification of novel proteins from the calcifying shell matrix of the Manila clam Venerupis philippinarum. Mar Biotechnol (NY) 2011; 13:955-62. [PMID: 21221694 DOI: 10.1007/s10126-010-9357-0] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/29/2010] [Accepted: 12/21/2010] [Indexed: 02/05/2023]
Abstract
The shell of the Manila clam Venerupis philippinarum is composed of more than 99% calcium carbonate and of a small amount of organic matrix (around 0.2%). In this study, we developed one of the first proteomic approaches applied to mollusc shell in order to characterise the matrix proteins that are believed to be essential for the formation of the biomineral. The insoluble organic matrix, purified after demineralisation of the shell powder with cold acetic acid (5%), was digested with trypsin enzyme and then separated on nano-LC prior to nanospray/quadrupole time-of-flight analysis. MS/MS spectra were searched against the above 11,000 EST sequences available on the NCBI public database for Venerupis. Using this approach, we were able to identify partial or full-length sequence transcripts that encode for shell matrix proteins. These include three novel shell proteins whose sequences do not present any homologous proteins or already described domains, two putative protease inhibitor proteins containing Kazal-type domains, and a putative Ca(2+)-binding protein containing two EF-hand domains. Biomineral formation and evolutionary implications are discussed.
Collapse
Affiliation(s)
- Benjamin Marie
- UMR 5561 CNRS Biogéosciences, Université de Bourgogne, 6 Bd. Gabriel, Dijon, 21000, France.
| | | | | | | | | | | | | |
Collapse
|