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Daou EE. Effect of lamination layer thickness and abutment preparation on the fit of Co-Cr multi-unit prostheses fabricated by additive manufacturing: An in vitro study. J Prosthet Dent 2024; 131:652-657. [PMID: 35430049 DOI: 10.1016/j.prosdent.2022.02.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2021] [Revised: 02/04/2022] [Accepted: 02/04/2022] [Indexed: 11/19/2022]
Abstract
STATEMENT OF PROBLEM Selective laser melting has been increasingly used in the fabrication of metal-ceramic prostheses. The lamination layer thickness may influence the fit of the restoration. However, data regarding its impact remain scarce. PURPOSE The purpose of this in vitro study was to evaluate the marginal and internal fit of cobalt-chromium (Co-Cr) 3-unit frameworks fabricated by additive manufacturing with different melting layer thicknesses on different abutments. MATERIAL AND METHODS The first right maxillary premolar and molar from a typodont were prepared with a circumferential 1.2-mm chamfer, 2-mm occlusal reduction, and total taper of 8 degrees to receive 3-unit fixed partial dentures. After framework design, the data were sent to a laser machine, and 30 specimens were fabricated from Co-Cr metal powder (Mediloy S-Co) by selective laser melting. Specimens were assigned to 3 groups (n=10) with different lamination layer thicknesses of 25 (L25), 50 (L50), and 100 (L100) μm. Marginal fit and internal fit were evaluated. Results were compared among layer thickness groups and abutments. Data were compared by using the Levene test, t test, and ANOVA (α=.05). RESULTS A statistical difference was found between different layer thickness groups (P=.016), but not between abutments (P=.429). On the abutment level, significant difference was found in the gap values for the molars (P=.049) between layer thickness groups, but not for the premolars (P=.126). Group L25 reported the smallest mean discrepancy values, and group L100 reported the highest, with statistical difference found between group L100 and groups L25 (P<.001) and L50 (P<.025), but not between groups L25 and L50 (P=.094). CONCLUSIONS The lamination layer thickness affected the adaptation of the metal frameworks. Framework fit did not significantly differ between abutments.
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Affiliation(s)
- Elie E Daou
- Assistant Professor, Department of Prosthodontics, School of Dentistry, Lebanese University, Beirut, Lebanon; Assistant Professor, Al-Ayen University, Nile Street, Nasiriyah.
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DeLuca M, Sensale S, Lin PA, Arya G. Prediction and Control in DNA Nanotechnology. ACS Appl Bio Mater 2024; 7:626-645. [PMID: 36880799 DOI: 10.1021/acsabm.2c01045] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/08/2023]
Abstract
DNA nanotechnology is a rapidly developing field that uses DNA as a building material for nanoscale structures. Key to the field's development has been the ability to accurately describe the behavior of DNA nanostructures using simulations and other modeling techniques. In this Review, we present various aspects of prediction and control in DNA nanotechnology, including the various scales of molecular simulation, statistical mechanics, kinetic modeling, continuum mechanics, and other prediction methods. We also address the current uses of artificial intelligence and machine learning in DNA nanotechnology. We discuss how experiments and modeling are synergistically combined to provide control over device behavior, allowing scientists to design molecular structures and dynamic devices with confidence that they will function as intended. Finally, we identify processes and scenarios where DNA nanotechnology lacks sufficient prediction ability and suggest possible solutions to these weak areas.
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Affiliation(s)
- Marcello DeLuca
- Thomas Lord Department of Mechanical Engineering and Materials Science, Duke University, Durham, North Carolina 27708, United States
| | - Sebastian Sensale
- Department of Physics, Cleveland State University, Cleveland, Ohio 44115, United States
| | - Po-An Lin
- Thomas Lord Department of Mechanical Engineering and Materials Science, Duke University, Durham, North Carolina 27708, United States
| | - Gaurav Arya
- Thomas Lord Department of Mechanical Engineering and Materials Science, Duke University, Durham, North Carolina 27708, United States
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Alkhateeb SA, Hussain S, Albalawi W, El-Tantawy SA, El-Awady EI. Dissipative Kawahara ion-acoustic solitary and cnoidal waves in a degenerate magnetorotating plasma. Journal of Taibah University for Science 2023. [DOI: 10.1080/16583655.2023.2187606] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/18/2023]
Affiliation(s)
- Sadah A. Alkhateeb
- Mathematics Department, Faculty of Science, University of Jeddah, Jeddah, Saudi Arabia
| | - S. Hussain
- Theoretical Physics Division (TPD), PINSTECH, P.O. Nilore, Islamabad, Pakistan
| | - Wedad Albalawi
- Department of Mathematical Sciences, College of Science, Princess Nourah bint Abdulrahman university, Riyadh, Saudi Arabia
| | - S. A. El-Tantawy
- Department of Physics, Faculty of Science, Port Said University, Port Said, Egypt
- Research Center for Physics (RCP), Department of Physics, Faculty of Science and Arts, Al-Mikhwah, Al-Baha University, Al Bahah, Saudi Arabia
| | - E. I. El-Awady
- Department of Physics, Faculty of Science, Port Said University, Port Said, Egypt
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Ohshima H. Transient electrophoresis of a spherical colloidal particle with a slip surface. Electrophoresis 2023; 44:1795-1801. [PMID: 36537613 DOI: 10.1002/elps.202200242] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2022] [Revised: 11/20/2022] [Accepted: 12/16/2022] [Indexed: 12/24/2022]
Abstract
We derive the general expression for the transient electrophoretic mobility of a spherical colloidal particle with a slip surface in an electrolyte solution. From the general mobility expression, we derive an analytic mobility expression, which is applicable for low particle zeta potentials and arbitrary Debye length. This expression corresponds to the time-dependent transient Henry function.
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Affiliation(s)
- Hiroyuki Ohshima
- Faculty of Pharmaceutical Sciences, Tokyo University of Science, Noda, Chiba, Japan
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Costa AC, Vergassola M. Fluctuating landscapes and heavy tails in animal behavior. bioRxiv 2023:2023.01.03.522580. [PMID: 36747746 PMCID: PMC9900741 DOI: 10.1101/2023.01.03.522580] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
Animal behavior is shaped by a myriad of mechanisms acting on a wide range of scales. This immense variability hampers quantitative reasoning and renders the identification of universal principles elusive. Through data analysis and theory, we here show that slow non-ergodic drives generally give rise to heavy-tailed statistics in behaving animals. We leverage high-resolution recordings of C. elegans locomotion to extract a self-consistent reduced order model for an inferred reaction coordinate, bridging from sub-second chaotic dynamics to long-lived stochastic transitions among metastable states. The slow mode dynamics exhibits heavy-tailed first passage time distributions and correlation functions, and we show that such heavy tails can be explained by dynamics on a time-dependent potential landscape. Inspired by these results, we introduce a generic model in which we separate faster mixing modes that evolve on a quasi-stationary potential, from slower non-ergodic modes that drive the potential landscape, and reflect slowly varying internal states. We show that, even for simple potential landscapes, heavy tails emerge when barrier heights fluctuate slowly and strongly enough. In particular, the distribution of first passage times and the correlation function can asymptote to a power law, with related exponents that depend on the strength and nature of the fluctuations. We support our theoretical findings through direct numerical simulations.
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Affiliation(s)
- Antonio Carlos Costa
- Laboratoire de Physique de l’Ecole normale supérieure, ENS, Université PSL, CNRS, Sorbonne Université, Université de Paris, F-75005 Paris, France
| | - Massimo Vergassola
- Laboratoire de Physique de l’Ecole normale supérieure, ENS, Université PSL, CNRS, Sorbonne Université, Université de Paris, F-75005 Paris, France
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Goetz A, Akl H, Dixit P. The ability to sense the environment is heterogeneously distributed in cell populations. bioRxiv 2023:2023.03.07.531554. [PMID: 36945613 PMCID: PMC10028875 DOI: 10.1101/2023.03.07.531554] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/12/2023]
Abstract
Channel capacity of signaling networks quantifies their fidelity in sensing extracellular inputs. Low estimates of channel capacities for several mammalian signaling networks suggest that cells can barely detect the presence/absence of environmental signals. However, given the extensive heterogeneity and temporal stability of cell state variables, we hypothesize that the sensing ability itself may depend on the state of the cells. In this work, we present an information theoretic framework to quantify the distribution of sensing abilities from single cell data. Using data on two mammalian pathways, we show that sensing abilities are widely distributed in the population and most cells achieve better resolution of inputs compared to an " average cell ". We verify these predictions using live cell imaging data on the IGFR/FoxO pathway. Importantly, we identify cell state variables that correlate with cells' sensing abilities. This information theoretic framework will significantly improve our understanding of how cells sense in their environment.
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Peesapati S, Roy D. Structural and spectroscopic details of polysaccharide-bile acid composites from molecular dynamics simulations. J Biomol Struct Dyn 2023; 41:8782-8794. [PMID: 36310090 DOI: 10.1080/07391102.2022.2137242] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2022] [Accepted: 10/11/2022] [Indexed: 10/31/2022]
Abstract
Interactions of a prototypical bile acid (cholic acid, 'Ch') and its corresponding sodium salt (sodium cholate, 'NaCh') with a standard dietary β-glucan (β-G), bearing β-D-glucopyranose units having mixed 1-4/1-3 glycosidic linkages are studied using molecular dynamics simulation and density functional theory (DFT) calculations. Self-aggregation of the biliary components and their interaction with fifteen strands of the decameric mixed linkage β-glucan is elucidated by estimating varieties of physical properties like the coordination number, moment of inertia and shape anisotropy of the biggest cluster formed at different time instants. Small angle scattering profiles indicate formation of compact spheroidal aggregates. The simulated results of small angle scattering and 1H NMR chemical shifts are compared to spectroscopic data, wherever available. Density functional theory calculations and estimation of the 1H NMR chemical shifts of Ch-protons lying close to the β-G chains reveal change in chemical shift values from that in absence of the polysaccharide. Hydrogen bonding and non-bonding interactions, primarily short range van der Waals interactions and some extent of inter-molecular charge transfer are found to play significant role in stabilizing the complex soft assemblies of bile acid aggregates and β-G.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Sruthi Peesapati
- Department of Chemistry, Birla Institute of Technology and Science-Pilani, Hyderabad, India
| | - Durba Roy
- Department of Chemistry, Birla Institute of Technology and Science-Pilani, Hyderabad, India
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8
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Tan J, Shen Y, Ge Y, Martinez L, Huang H. Age-related model for estimating the symptomatic and asymptomatic transmissibility of COVID-19 patients. Biometrics 2023; 79:2525-2536. [PMID: 36517992 PMCID: PMC9877699 DOI: 10.1111/biom.13814] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2022] [Revised: 11/16/2022] [Accepted: 11/25/2022] [Indexed: 12/16/2022]
Abstract
Estimation of age-dependent transmissibility of COVID-19 patients is critical for effective policymaking. Although the transmissibility of symptomatic cases has been extensively studied, asymptomatic infection is understudied due to limited data. Using a dataset with reliably distinguished symptomatic and asymptomatic statuses of COVID-19 cases, we propose an ordinary differential equation model that considers age-dependent transmissibility in transmission dynamics. Under a Bayesian framework, multi-source information is synthesized in our model for identifying transmissibility. A shrinkage prior among age groups is also adopted to improve the estimation behavior of transmissibility from age-structured data. The added values of accounting for age-dependent transmissibility are further evaluated through simulation studies. In real-data analysis, we compare our approach with two basic models using the deviance information criterion (DIC) and its extension. We find that the proposed model is more flexible for our epidemic data. Our results also suggest that the transmissibility of asymptomatic infections is significantly lower (on average, 76.45% with a credible interval (27.38%, 88.65%)) than that of symptomatic cases. In both symptomatic and asymptomatic patients, the transmissibility mainly increases with age. Patients older than 30 years are more likely to develop symptoms with higher transmissibility. We also find that the transmission burden of asymptomatic cases is lower than that of symptomatic patients.
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Affiliation(s)
- Jianbin Tan
- School of MathematicsSun Yat‐sen UniversityGuangzhouChina
| | - Ye Shen
- Department of Epidemiology and Biostatistics, College of Public HealthUniversity of GeorgiaAthensGeorgiaUSA
| | - Yang Ge
- School of Health ProfessionsUniversity of Southern MississippiHattiesburgMississippiUSA
| | | | - Hui Huang
- School of MathematicsSun Yat‐sen UniversityGuangzhouChina
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9
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Ikeda Y, Soriano JK. Analysis of the characteristics of microwave-enhanced laser-induced atmospheric air plasma and ablation plasma for Al target. Talanta Open 2023; 7:100172. [DOI: 10.1016/j.talo.2022.100172] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
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Sun J, Liu Z, Chen W, Wu J, Yan Z, Luo X. Investigation of heat treatment to remove carbon on alumino-silicate fiber and mechanical and insulation properties of alumino-silicate fiber composites used at Bi-2212 CICC. Fusion Engineering and Design 2023. [DOI: 10.1016/j.fusengdes.2023.113710] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/07/2023]
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11
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Parikh S, Limbachiya C. Electron driven molecular processes for nucleosides. Radiat Phys Chem Oxf Engl 1993 2023. [DOI: 10.1016/j.radphyschem.2023.110940] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/03/2023]
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12
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Osmani N, Benkharfia H, Saad D. Neutron-induced damage simulations using MCNP6 and SRIM codes: Beyond neutron transmutation doping of silicon. ANN NUCL ENERGY 2023. [DOI: 10.1016/j.anucene.2023.109795] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/12/2023]
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13
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Abderahem M, Zhang Y, Liu Z, Shan X, Chen X. Vibrational effects on the valence electronic structure of acetaldehyde: An electron momentum spectroscopy investigation. Chem Phys 2023. [DOI: 10.1016/j.chemphys.2023.111892] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/29/2023]
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14
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Ko TS, Catennacio E, Shin SS, Stern J, Massey SL, Kilbaugh TJ, Hwang M. Advanced Neuromonitoring Modalities on the Horizon: Detection and Management of Acute Brain Injury in Children. Neurocrit Care 2023; 38:791-811. [PMID: 36949362 PMCID: PMC10241718 DOI: 10.1007/s12028-023-01690-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2022] [Accepted: 01/31/2023] [Indexed: 03/24/2023]
Abstract
Timely detection and monitoring of acute brain injury in children is essential to mitigate causes of injury and prevent secondary insults. Increasing survival in critically ill children has emphasized the importance of neuroprotective management strategies for long-term quality of life. In emergent and critical care settings, traditional neuroimaging modalities, such as computed tomography and magnetic resonance imaging (MRI), remain frontline diagnostic techniques to detect acute brain injury. Although detection of structural and anatomical abnormalities remains crucial, advanced MRI sequences assessing functional alterations in cerebral physiology provide unique diagnostic utility. Head ultrasound has emerged as a portable neuroimaging modality for point-of-care diagnosis via assessments of anatomical and perfusion abnormalities. Application of electroencephalography and near-infrared spectroscopy provides the opportunity for real-time detection and goal-directed management of neurological abnormalities at the bedside. In this review, we describe recent technological advancements in these neurodiagnostic modalities and elaborate on their current and potential utility in the detection and management of acute brain injury.
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Affiliation(s)
- Tiffany S Ko
- Department of Anesthesiology and Critical Care, Children's Hospital of Philadelphia, Philadelphia, USA.
| | - Eva Catennacio
- Division of Neurology, Department of Pediatrics, Children's Hospital of Philadelphia, Philadelphia, USA
| | - Samuel S Shin
- Department of Neurosurgery, Hospital of the University of Pennsylvania, Philadelphia, USA
| | - Joseph Stern
- Department of Radiology, Children's Hospital of Philadelphia, University of Pennsylvania, Philadelphia, USA
| | - Shavonne L Massey
- Division of Neurology, Department of Pediatrics, Children's Hospital of Philadelphia, Philadelphia, USA
| | - Todd J Kilbaugh
- Department of Anesthesiology and Critical Care, Children's Hospital of Philadelphia, Philadelphia, USA
| | - Misun Hwang
- Department of Radiology, Children's Hospital of Philadelphia, University of Pennsylvania, Philadelphia, USA
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Veverka M, Menozzi L, Yao J. The sound of blood: photoacoustic imaging in blood analysis. Med Nov Technol Devices 2023; 18:100219. [PMID: 37538444 PMCID: PMC10399298 DOI: 10.1016/j.medntd.2023.100219] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/07/2023] Open
Abstract
Blood analysis is a ubiquitous and critical aspect of modern medicine. Analyzing blood samples requires invasive techniques, various testing systems, and samples are limited to relatively small volumes. Photoacoustic imaging (PAI) is a novel imaging modality that utilizes non-ionizing energy that shows promise as an alternative to current methods. This paper seeks to review current applications of PAI in blood analysis for clinical use. Furthermore, we discuss obstacles to implementation and future directions to overcome these challenges. Firstly, we discuss three applications to cellular analysis of blood: sickle cell, bacteria, and circulating tumor cell detection. We then discuss applications to the analysis of blood plasma, including glucose detection and anticoagulation quantification. As such, we hope this article will serve as inspiration for PAI's potential application in blood analysis and prompt further studies to ultimately implement PAI into clinical practice.
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Matos IDA, Goes Pinto AC, Ferraz MVF, Adan WCS, Rodrigues RP, Dos Santos JX, Kitagawa RR, Lins RD, Oliveira TB, Costa Junior NBD. Identification of potential Staphylococcus aureus dihydrofolate reductase inhibitors using QSAR, molecular docking, dynamics simulations and free energy calculation. J Biomol Struct Dyn 2023; 41:3835-3846. [PMID: 35356863 DOI: 10.1080/07391102.2022.2057361] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2021] [Accepted: 03/19/2022] [Indexed: 10/18/2022]
Abstract
Herein we describe the use of molecular docking simulations, quantitative structure-activity relationships studies and ADMETox predictions to analyse the molecular recognition of a series of 7-aryl-2,4-diaminoquinazoline derivatives on the inhibition of Staphylococcus aureus dihydrofolate reductase and conducted a virtual screening to discover new potential inhibitors. A quantitative structure-activity relationship model was developed using 40 compounds and two selected descriptors. These descriptors indicated the importance of pKa and molar refractivity for the inhibitory activity against SaDHFR. The values of R2train, CVLOO and R2test generated by the model were 0.808, 0.766, and 0.785, respectively. The integration between QSAR, molecular docking, ADMETox analysis and molecular dynamics simulations with binding free energies calculation, yielded the compounds PC-124127620, PC-124127795 and PC-124127805 as promising candidates to SaDHFR inhibitors. These compounds presented high potency, good pharmacokinetics and toxicological profile. Thus, these molecules are good potential antimicrobial agent to treatment of infect disease caused by S. aureus.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Isaac de Araujo Matos
- Department of Chemistry, Graduate Program in Chemistry, Federal University of Sergipe-UFS, São Cristóvão-SE, Brazil
| | - Ana Carolina Goes Pinto
- Department of Chemistry, Graduate Program in Chemistry, Federal University of Sergipe-UFS, São Cristóvão-SE, Brazil
| | | | - Wenny Camilla Santos Adan
- Department of Pharmaceutical Sciences, Postgraduate Program in Pharmaceutical Sciences, Federal University of Espírito Santo-UFES, Vitória-ES, Brazil
| | - Ricardo Pereira Rodrigues
- Department of Pharmacy, Graduate Program in Chemistry, Federal University of Sergipe-UFS, São Cristóvão-SE, Brazil
| | - Juliane Xavier Dos Santos
- Department of Chemistry, Graduate Program in Chemistry, Federal University of Sergipe-UFS, São Cristóvão-SE, Brazil
| | - Rodrigo Rezende Kitagawa
- Department of Pharmaceutical Sciences, Postgraduate Program in Pharmaceutical Sciences, Federal University of Espírito Santo-UFES, Vitória-ES, Brazil
| | | | - Tiago Branquinho Oliveira
- Department of Pharmacy, Graduate Program in Chemistry, Federal University of Sergipe-UFS, São Cristóvão-SE, Brazil
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Hartmann J, Mayor R. Self-organized collective cell behaviors as design principles for synthetic developmental biology. Semin Cell Dev Biol 2023; 141:63-73. [PMID: 35450765 DOI: 10.1016/j.semcdb.2022.04.009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2022] [Accepted: 04/12/2022] [Indexed: 10/18/2022]
Abstract
Over the past two decades, molecular cell biology has graduated from a mostly analytic science to one with substantial synthetic capability. This success is built on a deep understanding of the structure and function of biomolecules and molecular mechanisms. For synthetic biology to achieve similar success at the scale of tissues and organs, an equally deep understanding of the principles of development is required. Here, we review some of the central concepts and recent progress in tissue patterning, morphogenesis and collective cell migration and discuss their value for synthetic developmental biology, emphasizing in particular the power of (guided) self-organization and the role of theoretical advances in making developmental insights applicable in synthesis.
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Affiliation(s)
- Jonas Hartmann
- Department of Cell and Developmental Biology, University College London, Gower Street, London WC1E 6BT, UK.
| | - Roberto Mayor
- Department of Cell and Developmental Biology, University College London, Gower Street, London WC1E 6BT, UK.
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Van Essen DC. Biomechanical models and mechanisms of cellular morphogenesis and cerebral cortical expansion and folding. Semin Cell Dev Biol 2023; 140:90-104. [PMID: 35840524 PMCID: PMC9942585 DOI: 10.1016/j.semcdb.2022.06.007] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2022] [Revised: 05/31/2022] [Accepted: 06/16/2022] [Indexed: 01/28/2023]
Abstract
Morphogenesis of the nervous system involves a highly complex spatio-temporal pattern of physical forces (mainly tension and pressure) acting on cells and tissues that are pliable but have an intricately organized cytoskeletal infrastructure. This review begins by covering basic principles of biomechanics and the core cytoskeletal toolkit used to regulate the shapes of cells and tissues during embryogenesis and neural development. It illustrates how the principle of 'tensegrity' provides a useful conceptual framework for understanding how cells dynamically respond to forces that are generated internally or applied externally. The latter part of the review builds on this foundation in considering the development of mammalian cerebral cortex. The main focus is on cortical expansion and folding - processes that take place over an extended period of prenatal and postnatal development. Cortical expansion and folding are likely to involve many complementary mechanisms, some related to regulating cell proliferation and migration and others related to specific types and patterns of mechanical tension and pressure. Three distinct multi-mechanism models are evaluated in relation to a set of 18 key experimental observations and findings. The Composite Tension Plus (CT+) model is introduced as an updated version of a previous multi-component Differential Expansion Sandwich Plus (DES+) model (Van Essen, 2020); the new CT+ model includes 10 distinct mechanisms and has the greatest explanatory power among published models to date. Much needs to be done in order to validate specific mechanistic components and to assess their relative importance in different species, and important directions for future research are suggested.
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Chazapi I, Diat O, Bauduin P. Aqueous solubilization of hydrophobic compounds by inorganic nano-ions: An unconventional mechanism. J Colloid Interface Sci 2023; 638:561-568. [PMID: 36773518 DOI: 10.1016/j.jcis.2023.01.115] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2022] [Revised: 01/19/2023] [Accepted: 01/23/2023] [Indexed: 01/27/2023]
Abstract
HYPOTHESIS Solubilization of hydrophobic compounds in water is commonly performed by using organic solubilizers such as hydrotropes, surfactants, co-solvents, and macrocycles to form host-guest complexes. 3,3'-commo-bis[closo-1,2-dicarba-3-cobaltadodecaborane] derivatives (COSANs) are fully inorganic and non-amphiphilic ionic boron clusters with nanometric size (nano-ions) showing superchaotropic properties as they strongly bind to neutral organic molecules. Therefore, we expect COSANs to act as solubilizers of sparingly water-soluble molecules, but with a mechanism different from all other organic solubilizers known so far. EXPERIMENTS The aqueous solubilization efficiency of COSANs towards butanol was evaluated by determining phase diagrams and comparing them to classical solubilizers. Nanostructuration of the mixture was studied using UV spectroscopy, small-angle X-ray, and neutron scattering with contrast variation. FINDINGS COSANs act as efficient aqueous solubilizers of medium-chain alcohols (0.6 < log P < 1.5). Unlike surfactants, COSAN is an efficient solubilizer in its monomeric state, at concentrations well below its critical aggregation concentration. Solubilization by COSAN takes place with a bi-dimensional anisotropic growth of COSAN/butanol co-assemblies, whereas solubilization by surfactant occurs via an isotropic swelling of micelles. Appealingly, COSANs/2-butanol co-assemblies efficiently solubilize more hydrophobic compounds with log P values up to around 6, offering new opportunities in many applied fields.
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Affiliation(s)
- Ioanna Chazapi
- ICSM, CEA, CNRS, ENSCM, Univ Montpellier, Bagnols sur Cèze, France
| | - Olivier Diat
- ICSM, CEA, CNRS, ENSCM, Univ Montpellier, Bagnols sur Cèze, France
| | - Pierre Bauduin
- ICSM, CEA, CNRS, ENSCM, Univ Montpellier, Bagnols sur Cèze, France.
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Açıkgöz M, Kripal R, Misra MG, Yadav AK, Gnutek P, Rudowicz C. Theoretical analysis of crystal field parameters and zero field splitting parameters for Mn2+ ions in tetramethylammonium tetrachlorozincate (TMATC-Zn). Polyhedron 2023; 235:116341. [DOI: 10.1016/j.poly.2023.116341] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/27/2023]
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21
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Lu S, Gao Y, Chen W, Zhang J, Wang Z, Zhang J, Liu Y. Generating nano-incised graphene kirigami membrane via selective tearing. Sep Purif Technol 2023; 313:123467. [DOI: 10.1016/j.seppur.2023.123467] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/27/2023]
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22
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Deng X, Ma X, Zhang W, Qin M, Xie W, Qiu P, Yin J, Wang K. In vivo deep-brain 2-photon fluorescent microscopy labeled with near-infrared dyes excited at the 1700 nm window. Anal Chim Acta 2023; 1255:341118. [PMID: 37032053 DOI: 10.1016/j.aca.2023.341118] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2023] [Revised: 03/01/2023] [Accepted: 03/17/2023] [Indexed: 03/30/2023]
Abstract
2-Photon fluorescence microscopy (2PFM) is an indispensable imaging technology for neuroscience. However, the imaging depth is usually limited to the cortical layer in mouse brain in vivo. Here, we demonstrate deep brain 2PFM in vivo excited at the 1700 nm window, using IR780 and aza-IR780 as fluorescent labels. Our detailed characterization of the multiphoton excitation and emission properties of IR780 and aza-IR780 show that: (1) IR780 or aza-IR780 generate 2-photon fluorescence excited at the 1700 nm window and are promising for 2PFM; (2) aza-IR780 exhibits a larger ησ2 with better anti-photobleaching property compared to IR780; The 2-photon action cross-sections of IR780 and aza-IR780 in plasma are an order-of-magnitude larger than those in PBS; (3) In vivo 2-photon emission spectra for both dyes show a notable red shift compared to those in vitro. Based on these characterization results, we demonstrate deep brain 2PFM labeled by them. A maximum imaging depth of 1585 μm (labeled by IR780) and 1800 μm (labeled by aza-IR780) into the mouse brain in vivo readily penetrates the subcortical region of hippocampus. Besides, a maximum of 1528 μm hemodynamic imaging depth is realized via 2PFM with aza-IR780 labeling, enabling us to measure blood flow speed in the hippocampus.
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Affiliation(s)
- Xiangquan Deng
- Key Laboratory of Optoelectronic Devices and Systems of Ministry of Education and Guangdong Province, College of Physics and Optoelectronic Engineering, Shenzhen University, Shenzhen, 518060, China
| | - Xiaoxie Ma
- Key Laboratory of Pesticide and Chemical Biology, Ministry of Education, Hubei International Scientific and Technological Cooperation Base of Pesticide and Green Synthesis, International Joint Research Center for Intelligent Biosensing Technology and Health, College of Chemistry, Central China Normal University, Wuhan, 430079, China
| | - Wanjian Zhang
- Key Laboratory of Optoelectronic Devices and Systems of Ministry of Education and Guangdong Province, College of Physics and Optoelectronic Engineering, Shenzhen University, Shenzhen, 518060, China
| | - Mengyuan Qin
- Key Laboratory of Optoelectronic Devices and Systems of Ministry of Education and Guangdong Province, College of Physics and Optoelectronic Engineering, Shenzhen University, Shenzhen, 518060, China
| | - Weixin Xie
- College of Electronics and Information Engineering, Shenzhen University, Shenzhen, 518060, China
| | - Ping Qiu
- Key Laboratory of Optoelectronic Devices and Systems of Ministry of Education and Guangdong Province, College of Physics and Optoelectronic Engineering, Shenzhen University, Shenzhen, 518060, China
| | - Jun Yin
- Key Laboratory of Pesticide and Chemical Biology, Ministry of Education, Hubei International Scientific and Technological Cooperation Base of Pesticide and Green Synthesis, International Joint Research Center for Intelligent Biosensing Technology and Health, College of Chemistry, Central China Normal University, Wuhan, 430079, China.
| | - Ke Wang
- Key Laboratory of Optoelectronic Devices and Systems of Ministry of Education and Guangdong Province, College of Physics and Optoelectronic Engineering, Shenzhen University, Shenzhen, 518060, China.
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23
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Koch CT. Solving the crystallographic phase problem using dynamical scattering in electron diffraction. Ultramicroscopy 2023; 247:113701. [PMID: 36791559 DOI: 10.1016/j.ultramic.2023.113701] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2022] [Revised: 01/21/2023] [Accepted: 02/07/2023] [Indexed: 02/12/2023]
Abstract
Solving crystal structures from kinematical X-ray or electron diffraction patterns of single crystals requires many more diffracted beams to be recorded than there are atoms in the structure, since the phases of the structure factors can only be retrieved from such data if the atoms can be resolved as sharply peaked objects. Here a method is presented by which the fact that multiple scattering encodes structure factor phases in the diffracted intensities is being used for solving the crystallographic phase problem. The retrieval of both amplitudes and phases of electron structure factors from diffraction patterns recorded with varying angle of incidence will be demonstrated. No assumption about the scattering potential itself is being made. In particular, the resolution in the diffraction data does not need to be sufficient to resolve atoms, making this method potentially interesting for electron crystallography of 2-dimensional protein crystals and other beam-sensitive complex structures.
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Affiliation(s)
- Christoph T Koch
- Department of Physics, Humboldt-Universität zu Berlin, Newtonstrasse 15, Berlin, 12489, Germany.
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24
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Xu H, Zheng X, Shi X. Surface hydrophilicity-mediated migration of nano/microparticles under temperature gradient in a confined space. J Colloid Interface Sci 2023; 637:489-499. [PMID: 36724663 DOI: 10.1016/j.jcis.2023.01.112] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2022] [Revised: 01/17/2023] [Accepted: 01/22/2023] [Indexed: 01/27/2023]
Abstract
HYPOTHESIS Particle transport by a temperature gradient is prospective in many biomedical applications. However, the prevalence of boundary confinement in practical use introduces synergistic effects of thermophoresis and thermo-osmosis, causing controversial phenomena and great difficulty in understanding the mechanisms. EXPERIMENTS We developed a microfluidic chip with a uniform temperature gradient and switchable substrate hydrophilicity to measure the migrations of various particles (d = 200 nm - 2 μm), through which the effects of particle thermophoresis and thermo-osmotic flow from the substrate surface were decoupled. The contribution of substrate hydrophilicity on thermo-osmosis was examined. Thermophoresis was measured to clarify its dependence on particle size and hydrophilicity. FINDINGS This paper reports the first experimental evidence of a large enthalpy-dependent thermo-osmotic mobility χ ∼ ΔH on a hydrophobic polymer surface, which is 1-2 orders of magnitude larger than that on hydrophilic surfaces. The normalized Soret coefficient for polystyrene particles, ST/d = 18.0 K-1µm-1, is confirmed to be constant, which helps clarify the controversy of the size dependence. Besides, the Soret coefficient of hydrophobic proteins is approximately-four times larger than that of hydrophilic extracellular vesicles. These findings suggest that the intrinsic slip on the hydrophobic surface could enhance both surface thermo-osmosis and particle thermophoresis.
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Affiliation(s)
- Haolan Xu
- Laboratory of Theoretical and Computational Nanoscience, CAS Center for Excellence in Nanoscience, National Center for Nanoscience and Technology, Chinese Academy of Sciences, Beijing 100190, China; University of Chinese Academy of Sciences, No.19A Yuquan Road, Beijing 100049, China
| | - Xu Zheng
- State Key Laboratory of Nonlinear Mechanics, Institute of Mechanics, Chinese Academy of Sciences, Beijing 100190, China.
| | - Xinghua Shi
- Laboratory of Theoretical and Computational Nanoscience, CAS Center for Excellence in Nanoscience, National Center for Nanoscience and Technology, Chinese Academy of Sciences, Beijing 100190, China; University of Chinese Academy of Sciences, No.19A Yuquan Road, Beijing 100049, China.
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25
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Nanda A, Johnson GW, Mu Y, Ahrens MB, Chang C, Englot DJ, Breakspear M, Rubinov M. Time-resolved correlation of distributed brain activity tracks E-I balance and accounts for diverse scale-free phenomena. Cell Rep 2023; 42:112254. [PMID: 36966391 PMCID: PMC10518034 DOI: 10.1016/j.celrep.2023.112254] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2022] [Revised: 12/22/2022] [Accepted: 02/28/2023] [Indexed: 03/27/2023] Open
Abstract
Much of systems neuroscience posits the functional importance of brain activity patterns that lack natural scales of sizes, durations, or frequencies. The field has developed prominent, and sometimes competing, explanations for the nature of this scale-free activity. Here, we reconcile these explanations across species and modalities. First, we link estimates of excitation-inhibition (E-I) balance with time-resolved correlation of distributed brain activity. Second, we develop an unbiased method for sampling time series constrained by this time-resolved correlation. Third, we use this method to show that estimates of E-I balance account for diverse scale-free phenomena without need to attribute additional function or importance to these phenomena. Collectively, our results simplify existing explanations of scale-free brain activity and provide stringent tests on future theories that seek to transcend these explanations.
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Affiliation(s)
- Aditya Nanda
- Department of Biomedical Engineering, Vanderbilt University, Nashville, TN 37235, USA.
| | - Graham W Johnson
- Department of Biomedical Engineering, Vanderbilt University, Nashville, TN 37235, USA
| | - Yu Mu
- Institute of Neuroscience, Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai 200031, China
| | - Misha B Ahrens
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA
| | - Catie Chang
- Department of Biomedical Engineering, Vanderbilt University, Nashville, TN 37235, USA; Department of Electrical and Computer Engineering, Vanderbilt University, Nashville, TN 37235, USA; Department of Computer Science, Vanderbilt University, Nashville, TN 37235, USA
| | - Dario J Englot
- Department of Biomedical Engineering, Vanderbilt University, Nashville, TN 37235, USA; Department of Neurological Surgery, Vanderbilt University Medical Center, Nashville, TN 37232, USA; Department of Radiology and Radiological Sciences, Vanderbilt University Medical Center, Nashville, TN 37232, USA
| | - Michael Breakspear
- School of Psychology, University of Newcastle, Callaghan, NSW 2308, Australia; School of Medicine and Public Health, University of Newcastle, Callaghan, NSW 2308, Australia
| | - Mikail Rubinov
- Department of Biomedical Engineering, Vanderbilt University, Nashville, TN 37235, USA; Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA; Department of Computer Science, Vanderbilt University, Nashville, TN 37235, USA.
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26
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Wang R, Yang X, Huang W, Liu Z, Zhu Y, Liu H, Wang Z. Superatomic states under high pressure. iScience 2023; 26:106281. [PMID: 36950123 PMCID: PMC10025982 DOI: 10.1016/j.isci.2023.106281] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2022] [Revised: 12/12/2022] [Accepted: 02/22/2023] [Indexed: 03/06/2023] Open
Abstract
The study of superatoms has attracted great interest since they apparently go beyond the traditional understanding of the periodic table of elements. In this work, we clearly show that superatoms can be extended from conventional structures to states under pressure condition. By studying the compression process of the CH4@C60 system formed via embedding methane molecules inside fullerene C60, it is found that the system maintains superatomic properties in both static states, and even dynamic rotation situations influenced by quantum tunneling. Remarkably, the simulations reveal the emergence of new superatomic molecular orbitals by decreasing the confined space to approach the van der Waals boundary between CH4 and C60. Our current results not only establish a complete picture of superatoms from ambient condition to high pressure, but also offer a perspective for the discovery and exploration of new properties in superatom systems under extreme conditions.
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Affiliation(s)
- Rui Wang
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130012, China
| | - Xinrui Yang
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130012, China
| | - Wanrong Huang
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130012, China
| | - Zhonghua Liu
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130012, China
| | - Yu Zhu
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130012, China
| | - Hanyu Liu
- International Center for Computational Method & Software and State Key Laboratory of Superhard Materials, College of Physics, Jilin University, Changchun 130012, China
- Corresponding author
| | - Zhigang Wang
- Institute of Atomic and Molecular Physics, Jilin University, Changchun 130012, China
- International Center for Computational Method & Software and State Key Laboratory of Superhard Materials, College of Physics, Jilin University, Changchun 130012, China
- Institute of Theoretical Chemistry, College of Chemistry, Jilin University, Changchun 130023, China
- Corresponding author
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27
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Mostafavi AH, Mishra AK, Gallucci F, Kim JH, Ulbricht M, Coclite AM, Hosseini SS. Advances in surface modification and functionalization for tailoring the characteristics of thin films and membranes via chemical vapor deposition techniques. J Appl Polym Sci 2023. [DOI: 10.1002/app.53720] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/12/2023]
Affiliation(s)
| | - Ajay Kumar Mishra
- College of Medicine and Chemical Engineering Hebei University of Science and Technology Shijiazhuang China
- Division of Nanomaterials Academy of Nanotechnology and Waste Water Innovations Johannesburg South Africa
- Department of Chemistry Durban University of Technology Durban South Africa
| | - Fausto Gallucci
- Inorganic Membranes and Membrane Reactors, Sustainable Process Engineering, Department of Chemical Engineering and Chemistry Eindhoven University of Technology Eindhoven MB The Netherlands
| | - Jong Hak Kim
- Department of Chemical and Biomolecular Engineering Yonsei University Seoul South Korea
| | - Mathias Ulbricht
- Lehrstuhl für Technische Chemie II Universität Duisburg‐Essen Essen Germany
| | - Anna Maria Coclite
- Institute of Solid State Physics, NAWI Graz Graz University of Technology Graz Austria
| | - Seyed Saeid Hosseini
- Institute for Nanotechnology and Water Sustainability (iNanoWS), College of Science, Engineering and Technology University of South Africa Johannesburg South Africa
- Department of Chemical Engineering Vrije Universiteit Brussel Brussels Belgium
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28
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Wang Y, Geng Q, Zhang Y, Adler-Abramovich L, Fan X, Mei D, Gazit E, Tao K. Fmoc-diphenylalanine gelating nanoarchitectonics: A simplistic peptide self-assembly to meet complex applications. J Colloid Interface Sci 2023; 636:113-133. [PMID: 36623365 DOI: 10.1016/j.jcis.2022.12.166] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2022] [Revised: 12/19/2022] [Accepted: 12/30/2022] [Indexed: 01/05/2023]
Abstract
9-fluorenylmethoxycarbonyl-diphenylalanine (Fmoc-FF), has been has been extensively explored due to its ultrafast self-assembly kinetics, inherent biocompatibility, tunable physicochemical properties, and especially, the capability of forming self-sustained gels under physiological conditions. Consequently, various methodologies to develop Fmoc-FF gels and their corresponding applications in biomedical and industrial fields have been extensively studied. Herein, we systemically summarize the mechanisms underlying Fmoc-FF self-assembly, discuss the preparation methodologies of Fmoc-FF hydrogels, and then deliberate the properties as well as the diverse applications of Fmoc-FF self-assemblies. Finally, the contemporary shortcomings which limit the development of Fmoc-FF self-assembly are raised and the alternative solutions are proposed, along with future research perspectives.
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Affiliation(s)
- Yunxiao Wang
- State Key Laboratory of Fluid Power and Mechatronic Systems, School of Mechanical Engineering, Zhejiang University, Hangzhou 310027, China; Hangzhou Global Scientific and Technological Innovation Center, Zhejiang University, Hangzhou 311200, China; Zhejiang-Israel Joint Laboratory of Self-Assembling Functional Materials, Hangzhou 311200, China
| | - Qiang Geng
- State Key Laboratory of Fluid Power and Mechatronic Systems, School of Mechanical Engineering, Zhejiang University, Hangzhou 310027, China; Hangzhou Global Scientific and Technological Innovation Center, Zhejiang University, Hangzhou 311200, China
| | - Yan Zhang
- Centre for Bioengineering and Biotechnology, College of Chemical Engineering, China University of Petroleum (East China), 66 Changjiang West Road, Qingdao 266580, China
| | - Lihi Adler-Abramovich
- Department of Oral Biology, The Goldschleger School of Dental Medicine, Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv 6997801, Israel; The Center for Nanoscience and Nanotechnology, Tel Aviv University, Tel Aviv 6997801, Israel; Zhejiang-Israel Joint Laboratory of Self-Assembling Functional Materials, Hangzhou 311200, China.
| | - Xinyuan Fan
- State Key Laboratory of Fluid Power and Mechatronic Systems, School of Mechanical Engineering, Zhejiang University, Hangzhou 310027, China; Key Laboratory of Advanced Manufacturing Technology of Zhejiang Province, School of Mechanical Engineering, Zhejiang University, Hangzhou 310027, China; Zhejiang-Israel Joint Laboratory of Self-Assembling Functional Materials, Hangzhou 311200, China
| | - Deqing Mei
- State Key Laboratory of Fluid Power and Mechatronic Systems, School of Mechanical Engineering, Zhejiang University, Hangzhou 310027, China; Key Laboratory of Advanced Manufacturing Technology of Zhejiang Province, School of Mechanical Engineering, Zhejiang University, Hangzhou 310027, China
| | - Ehud Gazit
- The Shmunis School of Biomedicine and Cancer Research, George S. Wise Faculty of Life Sciences, Tel Aviv University, 6997801 Tel Aviv, Israel; Department of Materials Science and Engineering, Iby and Aladar Fleischman, Tel Aviv University, 6997801 Tel Aviv, Israel; Zhejiang-Israel Joint Laboratory of Self-Assembling Functional Materials, Hangzhou 311200, China.
| | - Kai Tao
- State Key Laboratory of Fluid Power and Mechatronic Systems, School of Mechanical Engineering, Zhejiang University, Hangzhou 310027, China; Hangzhou Global Scientific and Technological Innovation Center, Zhejiang University, Hangzhou 311200, China; Key Laboratory of Advanced Manufacturing Technology of Zhejiang Province, School of Mechanical Engineering, Zhejiang University, Hangzhou 310027, China; Zhejiang-Israel Joint Laboratory of Self-Assembling Functional Materials, Hangzhou 311200, China.
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29
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Li H, Xu Z, Ma M. Temperature-dependent slip length for water and electrolyte solution. J Colloid Interface Sci 2023; 636:512-517. [PMID: 36652826 DOI: 10.1016/j.jcis.2023.01.040] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Revised: 01/01/2023] [Accepted: 01/08/2023] [Indexed: 01/12/2023]
Abstract
HYPOTHESIS The temperature dependence of boundary slip at liquid-solid interface is critical both for the fundamental theory and applications of fluid mechanics on micro and nanoscale, such as sustainable cooling of electronic devices. However, there is a controversy on the temperature dependence of boundary slip which lacks experimental evidence, we aim to resolve it by hypothesizing that the temperature dependent slip length depends on the variation in the interfacial energy barrier. EXPERIMENTS Here, we measured ls - T relation of water and NaCl solution on self-assembled FDTS (Perfluorodecyltrichlorosilane) surface using colloidal probe AFM. The transition of ls - T monotonicity is found. For water and 0.1 M NaCl solution, ls is negatively correlated with T, while for 1 M NaCl solution, ls is positively correlated with T. FINDINGS Together with molecular dynamics simulations, such observation is quantitatively explained with an analytical model based on rate theory, where the ls - T monotonicity depends on the difference between liquid-solid interfacial energy barrier and liquid internal energy barrier. Our results provide not only solid experimental evidence for the boundary slip being a rate process, but also a basis for the thermal-hydrodynamic design of microfluidic and nanofluidic devices.
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Affiliation(s)
- Han Li
- Department of Mechanical Engineering, State Key Laboratory of Tribology in Advanced Equipment (SKLT), Tsinghua University, Beijing 100084, China; Center for Nano and Micro Mechanics, Tsinghua University, Beijing 100084, China
| | - Zhi Xu
- Department of Mechanical Engineering, State Key Laboratory of Tribology in Advanced Equipment (SKLT), Tsinghua University, Beijing 100084, China; Center for Nano and Micro Mechanics, Tsinghua University, Beijing 100084, China
| | - Ming Ma
- Department of Mechanical Engineering, State Key Laboratory of Tribology in Advanced Equipment (SKLT), Tsinghua University, Beijing 100084, China; Center for Nano and Micro Mechanics, Tsinghua University, Beijing 100084, China.
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30
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Azimi Yancheshme A, Palmese GR, Alvarez NJ. A generalized scaling theory for spontaneous spreading of Newtonian fluids on solid substrates. J Colloid Interface Sci 2023; 636:677-688. [PMID: 36680958 DOI: 10.1016/j.jcis.2023.01.025] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2022] [Revised: 01/03/2023] [Accepted: 01/05/2023] [Indexed: 01/09/2023]
Abstract
HYPOTHESIS There exists a generalized solution for the spontaneous spreading dynamics of droplets taking into account the influence of interfacial tension and gravity. EXPERIMENTS This work presents a generalized scaling theory for the problem of spontaneous dynamic spreading of Newtonian fluids on a flat substrate using experimental analysis and numerical simulations. More specifically, we first validate and modify a dynamic contact angle model to accurately describe the dependency of contact angle on the contact line velocity, which is generalized by the capillary number. The dynamic contact model is implemented into a two-phase moving mesh computational fluid dynamics (CFD) model, which is validated using experimental results. FINDINGS We show that the spreading process is governed by three important parameters: the Bo number, viscous timescale τviscous, and static advancing contact angle, θs. More specifically, there exists a master spreading curve for a specific Bo and θs by scaling the spreading time with the τviscous. Moreover, we developed a correlation for prediction of the equilibrium shape of the droplets as a function of both Bo and θs. The results of this study can be used in a wide range of applications to predict both dynamic and equilibrium shape of droplets, such as in droplet-based additive manufacturing.
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Affiliation(s)
| | - Giuseppe R Palmese
- Chemical and Biological Engineering, Drexel University, Philadelphia, PA 19104, USA
| | - Nicolas J Alvarez
- Chemical and Biological Engineering, Drexel University, Philadelphia, PA 19104, USA
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31
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Duan C, Wang B, Li J, Xu J, Zeng J, Ying G, Chen K. Multidimensional dynamic regulation of cellulose coloration for digital recognition and humidity response. Int J Biol Macromol 2023; 234:123597. [PMID: 36796560 DOI: 10.1016/j.ijbiomac.2023.123597] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2022] [Revised: 01/15/2023] [Accepted: 02/05/2023] [Indexed: 02/16/2023]
Abstract
Structural color is an eye-catching phenomenon in nature, which originates from the synergistic effect of cholesteric structure inside living organisms and light. However, biomimetic design and green construction of dynamically tunable structural color materials have been a great challenge in the field of photonic manufacturing. In this work, the new ability of L-lactic acid (LLA) to multi-dimensionally modulate the cholesteric structures constructed from cellulose nanocrystals (CNC) is revealed for the first time. By studying the molecular-scale hydrogen bonding mechanism, a novel strategy that electrostatic repulsion and hydrogen bonding forces jointly drive the uniform arrangement of cholesteric structures is proposed. Due to the flexible tunability and uniform alignment of the CNC cholesteric structure, different encoded messages were developed in the CNC/LLA (CL) pattern. Under different viewing conditions, the recognition information of different digits will continue to reversibly and rapidly switch until the cholesteric structure is destroyed. In addition, the LLA molecules facilitated the more sensitive response of the CL film to the humidity environment, making it exhibit reversible and tunable structural colors under different humidity. These excellent properties provide more possibilities for the application of CL materials in the fields of multi-dimensional display, anti-counterfeiting encryption, and environmental monitoring.
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Affiliation(s)
- Chengliang Duan
- Plant Fiber Material Science Research Center, State Key Laboratory of Pulp and Paper Engineering, School of Light Industry and Engineering, South China University of Technology, Guangzhou 510640, China; Guangdong Provincial Key Laboratory of Plant Resources Biorefinery, Guangzhou 51006, China
| | - Bin Wang
- Plant Fiber Material Science Research Center, State Key Laboratory of Pulp and Paper Engineering, School of Light Industry and Engineering, South China University of Technology, Guangzhou 510640, China; Guangdong Provincial Key Laboratory of Plant Resources Biorefinery, Guangzhou 51006, China.
| | - Jinpeng Li
- Plant Fiber Material Science Research Center, State Key Laboratory of Pulp and Paper Engineering, School of Light Industry and Engineering, South China University of Technology, Guangzhou 510640, China; Guangdong Provincial Key Laboratory of Plant Resources Biorefinery, Guangzhou 51006, China.
| | - Jun Xu
- Plant Fiber Material Science Research Center, State Key Laboratory of Pulp and Paper Engineering, School of Light Industry and Engineering, South China University of Technology, Guangzhou 510640, China; Guangdong Provincial Key Laboratory of Plant Resources Biorefinery, Guangzhou 51006, China
| | - Jinsong Zeng
- Plant Fiber Material Science Research Center, State Key Laboratory of Pulp and Paper Engineering, School of Light Industry and Engineering, South China University of Technology, Guangzhou 510640, China; Guangdong Provincial Key Laboratory of Plant Resources Biorefinery, Guangzhou 51006, China
| | - Guangdong Ying
- Shandong Sun Holdings Group, No. 1 Youyi Road, Yanzhou District, Jining 272100, China.
| | - Kefu Chen
- Plant Fiber Material Science Research Center, State Key Laboratory of Pulp and Paper Engineering, School of Light Industry and Engineering, South China University of Technology, Guangzhou 510640, China; Guangdong Provincial Key Laboratory of Plant Resources Biorefinery, Guangzhou 51006, China
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32
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Robba C, Battaglini D, Rasulo F, Lobo FA, Matta B. The importance of monitoring cerebral oxygenation in non brain injured patients. J Clin Monit Comput 2023:10.1007/s10877-023-01002-8. [PMID: 37043157 PMCID: PMC10091334 DOI: 10.1007/s10877-023-01002-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2023] [Accepted: 03/22/2023] [Indexed: 04/13/2023]
Abstract
Over the past few years, the use of non-invasive neuromonitoring in non-brain injured patients has increased, as a result of the recognition that many of these patients are at risk of brain injury in a wide number of clinical scenarios and therefore may benefit from its application which allows interventions to prevent injury and improve outcome. Among these, are post cardiac arrest syndrome, sepsis, liver failure, acute respiratory failure, and the perioperative settings where in the absence of a primary brain injury, certain groups of patients have high risk of neurological complications. While there are many neuromonitoring modalities utilized in brain injured patients, the majority of those are either invasive such as intracranial pressure monitoring, require special skill such as transcranial Doppler ultrasonography, or intermittent such as pupillometry and therefore unable to provide continuous monitoring. Cerebral oximetry using Near infrared Spectroscopy, is a simple non invasive continuous measure of cerebral oxygenation that has been shown to be useful in preventing cerebral hypoxemia both within the intensive care unit and the perioperative settings. At present, current recommendations for standard monitoring during anesthesia or in the general intensive care concentrate mainly on hemodynamic and respiratory monitoring without specific indications regarding the brain, and in particular, brain oximetry. The aim of this manuscript is to provide an up-to-date overview of the pathophysiology and applications of cerebral oxygenation in non brain injured patients as part of non-invasive multimodal neuromonitoring in the early identification and treatment of neurological complications in this population.
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Affiliation(s)
- Chiara Robba
- Anesthesia and Intensive Care, IRCCS Policlinico San Martino, Genoa, Italy.
- Department of Surgical Science and Integrated Diagnostics, University of Genoa, Genoa, Italy.
| | - Denise Battaglini
- Anesthesia and Intensive Care, IRCCS Policlinico San Martino, Genoa, Italy
| | - Francesco Rasulo
- Department of Anesthesia and Intensive Care, Spedali Civili University Affiliated Hospital of Brescia, Brescia, Italy
| | - Francisco A Lobo
- Institute of Anesthesiology, Cleveland Clinic, Abu Dhabi, United Arab Emirates
| | - Basil Matta
- Neurocritical Care Unit, Cambridge University Hospitals, Cambridge, UK
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33
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Losero E, Jagannath S, Pezzoli M, Goblot V, Babashah H, Lashuel HA, Galland C, Quack N. Neuronal growth on high-aspect-ratio diamond nanopillar arrays for biosensing applications. Sci Rep 2023; 13:5909. [PMID: 37041255 PMCID: PMC10090193 DOI: 10.1038/s41598-023-32235-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2022] [Accepted: 03/24/2023] [Indexed: 04/13/2023] Open
Abstract
Monitoring neuronal activity with simultaneously high spatial and temporal resolution in living cell cultures is crucial to advance understanding of the development and functioning of our brain, and to gain further insights in the origin of brain disorders. While it has been demonstrated that the quantum sensing capabilities of nitrogen-vacancy (NV) centers in diamond allow real time detection of action potentials from large neurons in marine invertebrates, quantum monitoring of mammalian neurons (presenting much smaller dimensions and thus producing much lower signal and requiring higher spatial resolution) has hitherto remained elusive. In this context, diamond nanostructuring can offer the opportunity to boost the diamond platform sensitivity to the required level. However, a comprehensive analysis of the impact of a nanostructured diamond surface on the neuronal viability and growth was lacking. Here, we pattern a single crystal diamond surface with large-scale nanopillar arrays and we successfully demonstrate growth of a network of living and functional primary mouse hippocampal neurons on it. Our study on geometrical parameters reveals preferential growth along the nanopillar grid axes with excellent physical contact between cell membrane and nanopillar apex. Our results suggest that neuron growth can be tailored on diamond nanopillars to realize a nanophotonic quantum sensing platform for wide-field and label-free neuronal activity recording with sub-cellular resolution.
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Affiliation(s)
- Elena Losero
- School of Basic Sciences, Institute of Physics, EPFL, Rte Cantonale, 1015, Lausanne, Switzerland.
- Division of Quantum Metrology and Nanotechnologies, Istituto Nazionale di Ricerca Metrologica (INRiM), Strada delle Cacce 91, 10135, Torino, Italy.
- School of Engineering, Institute of Electrical and Micro Engineering, EPFL, Rte Cantonale, 1015, Lausanne, Switzerland.
| | - Somanath Jagannath
- School of Life Sciences, EPFL, Rte Cantonale, 1015, Lausanne, Switzerland
| | - Maurizio Pezzoli
- School of Life Sciences, EPFL, Rte Cantonale, 1015, Lausanne, Switzerland
| | - Valentin Goblot
- School of Basic Sciences, Institute of Physics, EPFL, Rte Cantonale, 1015, Lausanne, Switzerland
| | - Hossein Babashah
- School of Basic Sciences, Institute of Physics, EPFL, Rte Cantonale, 1015, Lausanne, Switzerland
| | - Hilal A Lashuel
- School of Life Sciences, EPFL, Rte Cantonale, 1015, Lausanne, Switzerland
| | - Christophe Galland
- School of Basic Sciences, Institute of Physics, EPFL, Rte Cantonale, 1015, Lausanne, Switzerland
| | - Niels Quack
- School of Aerospace, Mechanical and Mechatronic Engineering, The University of Sydney, Sydney, NSW, Australia
- School of Engineering, Institute of Electrical and Micro Engineering, EPFL, Rte Cantonale, 1015, Lausanne, Switzerland
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Kleinheins J, Shardt N, El Haber M, Ferronato C, Nozière B, Peter T, Marcolli C. Surface tension models for binary aqueous solutions: a review and intercomparison. Phys Chem Chem Phys 2023; 25:11055-11074. [PMID: 37039675 PMCID: PMC10132450 DOI: 10.1039/d3cp00322a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/12/2023]
Abstract
The liquid-air surface tension of aqueous solutions is a fundamental quantity in multi-phase thermodynamics and fluid dynamics and thus relevant in many scientific and engineering fields. Various models have been proposed for its quantitative description. This Perspective gives an overview of the most popular models and their ability to reproduce experimental data of ten binary aqueous solutions of electrolytes and organic molecules chosen to be representative of different solute types. In addition, we propose a new model which reproduces sigmoidal curve shapes (Sigmoid model) to empirically fit experimental surface tension data. The surface tension of weakly surface-active substances is well reproduced by all models. In contrast, only few models successfully model the surface tension of aqueous solutions with strongly surface-active substances. For substances with a solubility limit, usually no experimental data is available for the surface tension of supersaturated solutions and the pure liquid solute. We discuss ways in which these can be estimated and emphasize the need for further research. The newly developed Sigmoid model best reproduces the surface tension of all tested solutions and can be recommended as a model for a broad range of binary mixtures and over the entire concentration range.
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Affiliation(s)
- Judith Kleinheins
- Institute for Atmospheric and Climate Science, ETH Zürich, Universitätstrasse 16, 8092 Zürich, Switzerland.
| | - Nadia Shardt
- Institute for Atmospheric and Climate Science, ETH Zürich, Universitätstrasse 16, 8092 Zürich, Switzerland.
| | | | | | - Barbara Nozière
- Royal Institute of Technology (KTH), Department of Chemistry, Stockholm, Sweden
| | - Thomas Peter
- Institute for Atmospheric and Climate Science, ETH Zürich, Universitätstrasse 16, 8092 Zürich, Switzerland.
| | - Claudia Marcolli
- Institute for Atmospheric and Climate Science, ETH Zürich, Universitätstrasse 16, 8092 Zürich, Switzerland.
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Chen Z, Li D, Lu Z, Liu Y, Zhang J, Li Y, Yin R, Li M, Zhang T, Dong X, Yan YJ, Feng DL. Charge order driven by multiple-Q spin fluctuations in heavily electron-doped iron selenide superconductors. Nat Commun 2023; 14:2023. [PMID: 37041177 PMCID: PMC10090174 DOI: 10.1038/s41467-023-37792-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2022] [Accepted: 03/28/2023] [Indexed: 04/13/2023] Open
Abstract
Intertwined spin and charge orders have been widely studied in high-temperature superconductors, since their fluctuations may facilitate electron pairing; however, they are rarely identified in heavily electron-doped iron selenides. Here, using scanning tunneling microscopy, we show that when the superconductivity of (Li0.84Fe0.16OH)Fe1-xSe is suppressed by introducing Fe-site defects, a short-ranged checkerboard charge order emerges, propagating along the Fe-Fe directions with an approximately 2aFe period. It persists throughout the whole phase space tuned by Fe-site defect density, from a defect-pinned local pattern in optimally doped samples to an extended order in samples with lower Tc or non-superconducting. Intriguingly, our simulations indicate that the charge order is likely driven by multiple-Q spin density waves originating from the spin fluctuations observed by inelastic neutron scattering. Our study proves the presence of a competing order in heavily electron-doped iron selenides, and demonstrates the potential of charge order as a tool to detect spin fluctuations.
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Affiliation(s)
- Ziyuan Chen
- School of Emerging Technology and Department of Physics, University of Science and Technology of China, Hefei, 230026, China
| | - Dong Li
- Beijing National Laboratory for Condensed Matter Physics, Institute of Physics, Chinese Academy of Sciences, Beijing, 100190, China
- School of Physical Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Zouyouwei Lu
- Beijing National Laboratory for Condensed Matter Physics, Institute of Physics, Chinese Academy of Sciences, Beijing, 100190, China
- School of Physical Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Yue Liu
- Beijing National Laboratory for Condensed Matter Physics, Institute of Physics, Chinese Academy of Sciences, Beijing, 100190, China
- School of Physical Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Jiakang Zhang
- School of Emerging Technology and Department of Physics, University of Science and Technology of China, Hefei, 230026, China
| | - Yuanji Li
- School of Emerging Technology and Department of Physics, University of Science and Technology of China, Hefei, 230026, China
| | - Ruotong Yin
- School of Emerging Technology and Department of Physics, University of Science and Technology of China, Hefei, 230026, China
| | - Mingzhe Li
- School of Emerging Technology and Department of Physics, University of Science and Technology of China, Hefei, 230026, China
| | - Tong Zhang
- Department of Physics, State Key Laboratory of Surface Physics and Advanced Material Laboratory, Fudan University, Shanghai, 200438, China
- Collaborative Innovation Center of Advanced Microstructures, Nanjing, 210093, China
- Shanghai Research Center for Quantum Sciences, Shanghai, 201315, China
| | - Xiaoli Dong
- Beijing National Laboratory for Condensed Matter Physics, Institute of Physics, Chinese Academy of Sciences, Beijing, 100190, China
- School of Physical Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China
- Songshan Lake Materials Laboratory, Dongguan, Guangdong, 523808, China
| | - Ya-Jun Yan
- School of Emerging Technology and Department of Physics, University of Science and Technology of China, Hefei, 230026, China.
| | - Dong-Lai Feng
- School of Emerging Technology and Department of Physics, University of Science and Technology of China, Hefei, 230026, China.
- Collaborative Innovation Center of Advanced Microstructures, Nanjing, 210093, China.
- Shanghai Research Center for Quantum Sciences, Shanghai, 201315, China.
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Chimczak G, Kowalewska-Kudłaszyk A, Lange E, Bartkiewicz K, Peřina J. The effect of thermal photons on exceptional points in coupled resonators. Sci Rep 2023; 13:5859. [PMID: 37041323 PMCID: PMC10090181 DOI: 10.1038/s41598-023-32864-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2022] [Accepted: 04/04/2023] [Indexed: 04/13/2023] Open
Abstract
We analyse two quantum systems with hidden parity-time ([Formula: see text]) symmetry: one is an optical device, whereas another is a superconducting microwave-frequency device. To investigate their symmetry, we introduce a damping frame (DF), in which loss and gain terms for a given Hamiltonian are balanced. We show that the non-Hermitian Hamiltonians of both systems can be tuned to reach an exceptional point (EP), i.e., the point in parameter space at which a transition from broken to unbroken hidden [Formula: see text] symmetry takes place. We calculate a degeneracy of a Liouvillian superoperator, which is called the Liouvillian exceptional point (LEP), and show that, in the optical domain, LEP is equivalent to EP obtained from the non-Hermitian Hamiltonian (HEP). We also report breaking the equivalence between LEP and HEP by a non-zero number of thermal photons for the microwave-frequency system.
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Affiliation(s)
- Grzegorz Chimczak
- Institute of Spintronics and Quantum Information, Faculty of Physics, Adam Mickiewicz University, 61-614, Poznań, Poland.
| | - Anna Kowalewska-Kudłaszyk
- Institute of Spintronics and Quantum Information, Faculty of Physics, Adam Mickiewicz University, 61-614, Poznań, Poland
| | - Ewelina Lange
- Institute of Spintronics and Quantum Information, Faculty of Physics, Adam Mickiewicz University, 61-614, Poznań, Poland
| | - Karol Bartkiewicz
- Institute of Spintronics and Quantum Information, Faculty of Physics, Adam Mickiewicz University, 61-614, Poznań, Poland
- RCPTM, Joint Laboratory of Optics of Palacký University and Institute of Physics of Czech Academy of Sciences, 17. listopadu 12, 771 46, Olomouc, Czech Republic
| | - Jan Peřina
- RCPTM, Joint Laboratory of Optics of Palacký University and Institute of Physics of Czech Academy of Sciences, 17. listopadu 12, 771 46, Olomouc, Czech Republic
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Wang SS, Li K, Dai YM, Wang HH, Zhang YC, Zhang YY. Quantum transports in two-dimensions with long range hopping. Sci Rep 2023; 13:5763. [PMID: 37031288 PMCID: PMC10082852 DOI: 10.1038/s41598-023-32888-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2022] [Accepted: 04/04/2023] [Indexed: 04/10/2023] Open
Abstract
We investigate the effects of disorder and shielding on quantum transports in a two dimensional system with all-to-all long range hopping. In the weak disorder, cooperative shielding manifests itself as perfect conducting channels identical to those of the short range model, as if the long range hopping does not exist. With increasing disorder, the average and fluctuation of conductance are larger than those in the short range model, since the shielding is effectively broken and therefore long range hopping starts to take effect. Over several orders of disorder strength (until [Formula: see text] times of nearest hopping), although the wavefunctions are not fully extended, they are also robustly prevented from being completely localized into a single site. Each wavefunction has several localization centers around the whole sample, thus leading to a fractal dimension remarkably smaller than 2 and also remarkably larger than 0, exhibiting a hybrid feature of localization and delocalization. The size scaling shows that for sufficiently large size and disorder strength, the conductance tends to saturate to a fixed value with the scaling function [Formula: see text], which is also a marginal phase between the typical metal ([Formula: see text]) and insulating phase ([Formula: see text]). The all-to-all coupling expels one isolated but extended state far out of the band, whose transport is extremely robust against disorder due to absence of backscattering. The bond current picture of this isolated state shows a quantum version of short circuit through long hopping.
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Affiliation(s)
- Si-Si Wang
- School of Physics and Materials Science, Guangzhou University, Guangzhou, 510006, China
- School of Mathematics and Information Science, Guangzhou University, Guangzhou, 510006, China
- Huangpu Research and Graduate School of Guangzhou University, Guangzhou, 510700, China
| | - Kangkang Li
- Department of Physics, Zhejiang Normal University, Jinhua, 321004, China
| | - Yi-Ming Dai
- School of Physics and Materials Science, Guangzhou University, Guangzhou, 510006, China
| | - Hui-Hui Wang
- School of Physics and Materials Science, Guangzhou University, Guangzhou, 510006, China
- Huangpu Research and Graduate School of Guangzhou University, Guangzhou, 510700, China
| | - Yi-Cai Zhang
- School of Physics and Materials Science, Guangzhou University, Guangzhou, 510006, China
| | - Yan-Yang Zhang
- School of Physics and Materials Science, Guangzhou University, Guangzhou, 510006, China.
- School of Mathematics and Information Science, Guangzhou University, Guangzhou, 510006, China.
- Huangpu Research and Graduate School of Guangzhou University, Guangzhou, 510700, China.
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38
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Küppers M, Albrecht D, Kashkanova AD, Lühr J, Sandoghdar V. Confocal interferometric scattering microscopy reveals 3D nanoscopic structure and dynamics in live cells. Nat Commun 2023; 14:1962. [PMID: 37029107 PMCID: PMC10081331 DOI: 10.1038/s41467-023-37497-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2022] [Accepted: 03/16/2023] [Indexed: 04/09/2023] Open
Abstract
Bright-field light microscopy and related phase-sensitive techniques play an important role in life sciences because they provide facile and label-free insights into biological specimens. However, lack of three-dimensional imaging and low sensitivity to nanoscopic features hamper their application in many high-end quantitative studies. Here, we demonstrate that interferometric scattering (iSCAT) microscopy operated in the confocal mode provides unique label-free solutions for live-cell studies. We reveal the nanometric topography of the nuclear envelope, quantify the dynamics of the endoplasmic reticulum, detect single microtubules, and map nanoscopic diffusion of clathrin-coated pits undergoing endocytosis. Furthermore, we introduce the combination of confocal and wide-field iSCAT modalities for simultaneous imaging of cellular structures and high-speed tracking of nanoscopic entities such as single SARS-CoV-2 virions. We benchmark our findings against simultaneously acquired fluorescence images. Confocal iSCAT can be readily implemented as an additional contrast mechanism in existing laser scanning microscopes. The method is ideally suited for live studies on primary cells that face labeling challenges and for very long measurements beyond photobleaching times.
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Affiliation(s)
- Michelle Küppers
- Max Planck Institute for the Science of Light, 91058, Erlangen, Germany
- Max-Planck-Zentrum für Physik und Medizin, 91058, Erlangen, Germany
- Department of Physics, Friedrich-Alexander-Universität Erlangen-Nürnberg, 91058, Erlangen, Germany
| | - David Albrecht
- Max Planck Institute for the Science of Light, 91058, Erlangen, Germany
- Max-Planck-Zentrum für Physik und Medizin, 91058, Erlangen, Germany
| | - Anna D Kashkanova
- Max Planck Institute for the Science of Light, 91058, Erlangen, Germany
- Max-Planck-Zentrum für Physik und Medizin, 91058, Erlangen, Germany
| | - Jennifer Lühr
- Max Planck Institute for the Science of Light, 91058, Erlangen, Germany
- Max-Planck-Zentrum für Physik und Medizin, 91058, Erlangen, Germany
| | - Vahid Sandoghdar
- Max Planck Institute for the Science of Light, 91058, Erlangen, Germany.
- Max-Planck-Zentrum für Physik und Medizin, 91058, Erlangen, Germany.
- Department of Physics, Friedrich-Alexander-Universität Erlangen-Nürnberg, 91058, Erlangen, Germany.
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39
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Yehorova D, Kretchmer JS. A multi-fragment real-time extension of projected density matrix embedding theory: Non-equilibrium electron dynamics in extended systems. J Chem Phys 2023; 158:131102. [PMID: 37031109 DOI: 10.1063/5.0146973] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/07/2023] Open
Abstract
In this work, we derive a multi-fragment real-time extension of the projected density matrix embedding theory (pDMET) designed to treat non-equilibrium electron dynamics in strongly correlated systems. As in the previously developed static pDMET, the real time pDMET partitions the total system into many fragments; the coupling between each fragment and the rest of the system is treated through a compact representation of the environment in terms of a quantum bath. The real-time pDMET involves simultaneously propagating the wavefunctions for each separate fragment–bath embedding system along with an auxiliary mean-field wavefunction of the total system. The equations of motion are derived by (i) projecting the time-dependent Schrödinger equation in the fragment and bath space associated with each separate fragment and by (ii) enforcing the pDMET matching conditions between the global 1-particle reduced density matrix (1-RDM) obtained from the fragment calculations and the mean-field 1-RDM at all points in time. The accuracy of the method is benchmarked through comparisons to time-dependent density-matrix renormalization group and time-dependent Hartree–Fock (TDHF) theory; the methods were applied to a one- and two-dimensional single-impurity Anderson model and multi-impurity Anderson models with ordered and disordered distributions of the impurities. The results demonstrate a large improvement over TDHF and rapid convergence to the exact dynamics with an increase in fragment size. Our results demonstrate that the real-time pDMET is a promising and flexible method that balances accuracy and efficiency to simulate the non-equilibrium electron dynamics in heterogeneous systems of large size.
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Affiliation(s)
- Dariia Yehorova
- Department of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia 30332, USA
| | - Joshua S. Kretchmer
- Department of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia 30332, USA
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40
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Young E, Melaugh G, Allen RJ. Active layer dynamics drives a transition to biofilm fingering. NPJ Biofilms Microbiomes 2023; 9:17. [PMID: 37024470 PMCID: PMC10079924 DOI: 10.1038/s41522-023-00380-w] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2022] [Accepted: 03/13/2023] [Indexed: 04/08/2023] Open
Abstract
The emergence of spatial organisation in biofilm growth is one of the most fundamental topics in biofilm biophysics and microbiology. It has long been known that growing biofilms can adopt smooth or rough interface morphologies, depending on the balance between nutrient supply and microbial growth; this 'fingering' transition has been linked with the average width of the 'active layer' of growing cells at the biofilm interface. Here we use long-time individual-based simulations of growing biofilms to investigate in detail the driving factors behind the biofilm-fingering transition. We show that the transition is associated with dynamical changes in the active layer. Fingering happens when gaps form in the active layer, which can cause local parts of the biofilm interface to pin, or become stationary relative to the moving front. Pinning can be transient or permanent, leading to different biofilm morphologies. By constructing a phase diagram for the transition, we show that the controlling factor is the magnitude of the relative fluctuations in the active layer thickness, rather than the active layer thickness per se. Taken together, our work suggests a central role for active layer dynamics in controlling the pinning of the biofilm interface and hence biofilm morphology.
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Affiliation(s)
- Ellen Young
- School of Physics and Astronomy, University of Edinburgh, Peter Guthrie Tait Road, Edinburgh, EH9 3FD, United Kingdom
| | - Gavin Melaugh
- School of Physics and Astronomy, University of Edinburgh, Peter Guthrie Tait Road, Edinburgh, EH9 3FD, United Kingdom
| | - Rosalind J Allen
- School of Physics and Astronomy, University of Edinburgh, Peter Guthrie Tait Road, Edinburgh, EH9 3FD, United Kingdom.
- Theoretical Microbial Ecology, Institute of Microbiology, Faculty of Biological Sciences, Friedrich Schiller University Jena, Buchaer Strasse 6, 07745, Jena, Germany.
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41
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Zanovello L, Löffler RJG, Caraglio M, Franosch T, Hanczyc MM, Faccioli P. Survival strategies of artificial active agents. Sci Rep 2023; 13:5616. [PMID: 37024516 PMCID: PMC10079664 DOI: 10.1038/s41598-023-32267-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2022] [Accepted: 03/24/2023] [Indexed: 04/08/2023] Open
Abstract
Artificial cells can be engineered to display dynamics sharing remarkable features in common with the survival behavior of living organisms. In particular, such active systems can respond to stimuli provided by the environment and undertake specific displacements to remain out of equilibrium, e.g. by moving towards regions with higher fuel concentration. In spite of the intense experimental activity aiming at investigating this fascinating behavior, a rigorous definition and characterization of such "survival strategies" from a statistical physics perspective is still missing. In this work, we take a first step in this direction by adapting and applying to active systems the theoretical framework of Transition Path Theory, which was originally introduced to investigate rare thermally activated transitions in passive systems. We perform experiments on camphor disks navigating Petri dishes and perform simulations in the paradigmatic active Brownian particle model to show how the notions of transition probability density and committor function provide the pivotal concepts to identify survival strategies, improve modeling, and obtain and validate experimentally testable predictions. The definition of survival in these artificial systems paves the way to move beyond simple observation and to formally characterize, design and predict complex life-like behaviors.
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Affiliation(s)
- Luigi Zanovello
- Physics Department, University of Trento, Via Sommarive 14, Povo, Trento, 38123, Italy
- Institut für Theoretische Physik, Universität Innsbruck, Technikerstraße 21A, 6020, Innsbruck, Austria
| | - Richard J G Löffler
- Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Via Sommarive 9, Povo, Trento, 38123, Italy
| | - Michele Caraglio
- Institut für Theoretische Physik, Universität Innsbruck, Technikerstraße 21A, 6020, Innsbruck, Austria
| | - Thomas Franosch
- Institut für Theoretische Physik, Universität Innsbruck, Technikerstraße 21A, 6020, Innsbruck, Austria
| | - Martin M Hanczyc
- Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Via Sommarive 9, Povo, Trento, 38123, Italy.
- Department of Chemical and Biological Engineering, University of New Mexico, Albuquerque, NM, 87106, USA.
| | - Pietro Faccioli
- Physics Department, University of Trento, Via Sommarive 14, Povo, Trento, 38123, Italy.
- Trento Institute for Fundamental Physics and Applications (INFN-TIFPA), Via Sommarive 14, Povo, Trento, 38123, Italy.
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42
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Wang L, Sarkar A, Grocke GL, Laorenza DW, Cheng B, Ritchhart A, Filatov AS, Patel SN, Gagliardi L, Anderson JS. Broad Electronic Modulation of Two-Dimensional Metal-Organic Frameworks over Four Distinct Redox States. J Am Chem Soc 2023. [PMID: 37018716 DOI: 10.1021/jacs.3c00495] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/07/2023]
Abstract
Two-dimensional (2D) inorganic materials have emerged as exciting platforms for (opto)electronic, thermoelectric, magnetic, and energy storage applications. However, electronic redox tuning of these materials can be difficult. Instead, 2D metal-organic frameworks (MOFs) offer the possibility of electronic tuning through stoichiometric redox changes, with several examples featuring one to two redox events per formula unit. Here, we demonstrate that this principle can be extended over a far greater span with the isolation of four discrete redox states in the 2D MOFs LixFe3(THT)2 (x = 0-3, THT = triphenylenehexathiol). This redox modulation results in 10,000-fold greater conductivity, p- to n-type carrier switching, and modulation of antiferromagnetic coupling. Physical characterization suggests that changes in carrier density drive these trends with relatively constant charge transport activation energies and mobilities. This series illustrates that 2D MOFs are uniquely redox flexible, making them an ideal materials platform for tunable and switchable applications.
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Affiliation(s)
- Lei Wang
- Department of Chemistry, University of Chicago, Chicago, Illinois 60637, United States
| | - Arup Sarkar
- Department of Chemistry, University of Chicago, Chicago, Illinois 60637, United States
| | - Garrett L Grocke
- Pritzker School of Molecular Engineering, University of Chicago, Chicago, Illinois 60637, United States
| | - Daniel William Laorenza
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Baorui Cheng
- Department of Chemistry, University of Chicago, Chicago, Illinois 60637, United States
| | - Andrew Ritchhart
- Department of Chemistry, University of Chicago, Chicago, Illinois 60637, United States
| | - Alexander S Filatov
- Department of Chemistry, University of Chicago, Chicago, Illinois 60637, United States
| | - Shrayesh N Patel
- Pritzker School of Molecular Engineering, University of Chicago, Chicago, Illinois 60637, United States
| | - Laura Gagliardi
- Department of Chemistry, University of Chicago, Chicago, Illinois 60637, United States
- Pritzker School of Molecular Engineering, University of Chicago, Chicago, Illinois 60637, United States
- James Franck Institute, University of Chicago, Chicago, Illinois 60637, United States
| | - John S Anderson
- Department of Chemistry, University of Chicago, Chicago, Illinois 60637, United States
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43
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Rayens NT, Cook KJ, McKinley SA, Payne CK. Palmitate-mediated disruption of the endoplasmic reticulum decreases intracellular vesicle motility. Biophys J 2023; 122:1355-1363. [PMID: 36869590 PMCID: PMC10111363 DOI: 10.1016/j.bpj.2023.03.001] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2022] [Revised: 02/02/2023] [Accepted: 02/28/2023] [Indexed: 03/05/2023] Open
Abstract
Essential cellular processes such as metabolism, protein synthesis, and autophagy require the intracellular transport of membrane-bound vesicles. The importance of the cytoskeleton and associated molecular motors for transport is well documented. Recent research has suggested that the endoplasmic reticulum (ER) may also play a role in vesicle transport through a tethering of vesicles to the ER. We use single-particle tracking fluorescence microscopy and a Bayesian change-point algorithm to characterize vesicle motility in response to the disruption of the ER, actin, and microtubules. This high-throughput change-point algorithm allows us to efficiently analyze thousands of trajectory segments. We find that palmitate-mediated disruption of the ER leads to a significant decrease in vesicle motility. A comparison with the disruption of actin and microtubules shows that disruption of the ER has a significant impact on vesicle motility, greater than the disruption of actin. Vesicle motility was dependent on cellular region, with greater motility in the cell periphery than the perinuclear region, possibly due to regional differences in actin and the ER. Overall, these results suggest that the ER is an important factor in vesicle transport.
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Affiliation(s)
- Nathan T Rayens
- Thomas Lord Department of Mechanical Engineering and Materials Science, Duke University, Durham, North Carolina
| | - Keisha J Cook
- School of Mathematical and Statistical Sciences, Clemson University, Clemson, South Carolina
| | - Scott A McKinley
- Department of Mathematics, Tulane University, New Orleans, Louisiana
| | - Christine K Payne
- Thomas Lord Department of Mechanical Engineering and Materials Science, Duke University, Durham, North Carolina.
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44
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Cylke A, Banerjee S. Super-exponential growth and stochastic size dynamics in rod-like bacteria. Biophys J 2023; 122:1254-1267. [PMID: 36814380 PMCID: PMC10111284 DOI: 10.1016/j.bpj.2023.02.015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2022] [Revised: 01/09/2023] [Accepted: 02/13/2023] [Indexed: 02/23/2023] Open
Abstract
Proliferating bacterial cells exhibit stochastic growth and size dynamics, but the regulation of noise in bacterial growth and morphogenesis remains poorly understood. A quantitative understanding of morphogenetic noise control, and how it changes under different growth conditions, would provide better insights into cell-to-cell variability and intergenerational fluctuations in cell physiology. Using multigenerational growth and width data of single Escherichia coli and Caulobacter crescentus cells, we deduce the equations governing growth and size dynamics of rod-like bacterial cells. Interestingly, we find that both E. coli and C. crescentus cells deviate from exponential growth within the cell cycle. In particular, the exponential growth rate increases during the cell cycle irrespective of nutrient or temperature conditions. We propose a mechanistic model that explains the emergence of super-exponential growth from autocatalytic production of ribosomes coupled to the rate of cell elongation and surface area synthesis. Using this new model and statistical inference on large datasets, we construct the Langevin equations governing cell growth and size dynamics of E. coli cells in different nutrient conditions. The single-cell level model predicts how noise in intragenerational and intergenerational processes regulate variability in cell morphology and generation times, revealing quantitative strategies for cellular resource allocation and morphogenetic noise control in different growth conditions.
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Affiliation(s)
- Arianna Cylke
- Department of Physics, Carnegie Mellon University, Pittsburgh, Pennsylvania
| | - Shiladitya Banerjee
- Department of Physics, Carnegie Mellon University, Pittsburgh, Pennsylvania.
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45
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Song T, Choi Y, Jeon JH, Cho YK. A machine learning approach to discover migration modes and transition dynamics of heterogeneous dendritic cells. Front Immunol 2023; 14:1129600. [PMID: 37081879 PMCID: PMC10110959 DOI: 10.3389/fimmu.2023.1129600] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2022] [Accepted: 03/06/2023] [Indexed: 04/07/2023] Open
Abstract
Dendritic cell (DC) migration is crucial for mounting immune responses. Immature DCs (imDCs) reportedly sense infections, while mature DCs (mDCs) move quickly to lymph nodes to deliver antigens to T cells. However, their highly heterogeneous and complex innate motility remains elusive. Here, we used an unsupervised machine learning (ML) approach to analyze long-term, two-dimensional migration trajectories of Granulocyte-macrophage colony-stimulating factor (GMCSF)-derived bone marrow-derived DCs (BMDCs). We discovered three migratory modes independent of the cell state: slow-diffusive (SD), slow-persistent (SP), and fast-persistent (FP). Remarkably, imDCs more frequently changed their modes, predominantly following a unicyclic SD→FP→SP→SD transition, whereas mDCs showed no transition directionality. We report that DC migration exhibits a history-dependent mode transition and maturation-dependent motility changes are emergent properties of the dynamic switching of the three migratory modes. Our ML-based investigation provides new insights into studying complex cellular migratory behavior.
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Affiliation(s)
- Taegeun Song
- Department of Physics, Pohang University of Science and Technology (POSTECH), Pohang, Republic of Korea
- Department of Data information and Physics, Kongju National University, Gongju, Republic of Korea
| | - Yongjun Choi
- Center for Soft and Living Matter, Institute for Basic Science (IBS), Ulsan, Republic of Korea
- Department of Biomedical Engineering, Ulsan National Institute of Science and Technology (UNIST), Ulsan, Republic of Korea
| | - Jae-Hyung Jeon
- Department of Physics, Pohang University of Science and Technology (POSTECH), Pohang, Republic of Korea
- Asia Pacific Center for Theoretical Physics (APCTP), Pohang, Republic of Korea
- *Correspondence: Jae-Hyung Jeon, ; Yoon-Kyoung Cho,
| | - Yoon-Kyoung Cho
- Center for Soft and Living Matter, Institute for Basic Science (IBS), Ulsan, Republic of Korea
- Department of Biomedical Engineering, Ulsan National Institute of Science and Technology (UNIST), Ulsan, Republic of Korea
- *Correspondence: Jae-Hyung Jeon, ; Yoon-Kyoung Cho,
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46
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Schimmoller A, Pasquinilli H, Landsman AS. Does Carrier Envelope Phase Affect the Ionization Site in a Neutral Diatomic Molecule? Atoms 2023. [DOI: 10.3390/atoms11040067] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/07/2023] Open
Abstract
A recent work shows how to extract the ionization site of a neutral diatomic molecule by comparing Quantum Trajectory Monte Carlo (QTMC) simulations with experimental measurements of the final electron momenta distribution. This method was applied to an experiment using a 40-femtosecond infrared pulse, finding that a downfield atom is roughly twice as likely to be ionized as an upfield atom in a neutral nitrogen molecule. However, an open question remains as to whether an assumption of the zero carrier envelope phase (CEP) used in the above work is still valid for short, few-cycle pulses where the CEP can play a large role. Given experimentalists’ limited control over the CEP and its dramatic effect on electron momenta after ionization, it is desirable to see what influence the CEP may have in determining the ionization site. In this paper, we employ QTMC techniques to simulate strong-field ionization and electron propagation from neutral N2 using an intense 6-cycle laser pulse with various CEP values. Comparing simulated electron momenta to experimental data indicates that the ratio of down-to-upfield ions remains roughly 2:1 regardless of the CEP. This confirms that the ionization site of a neutral molecule is determined predominantly by the laser frequency and intensity, as well as the ground-state molecular wavefunction, and is largely independent of the CEP.
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Affiliation(s)
- Alex Schimmoller
- Department of Physics, The Ohio State University, Columbus, OH 43210, USA
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47
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Takahashi N, Yoshino D, Sugahara R, Hirose S, Sone K, Rieu JP, Funamoto K. Microfluidic platform for the reproduction of hypoxic vascular microenvironments. Sci Rep 2023; 13:5428. [PMID: 37012295 PMCID: PMC10070331 DOI: 10.1038/s41598-023-32334-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2022] [Accepted: 03/26/2023] [Indexed: 04/05/2023] Open
Abstract
Vascular endothelial cells (ECs) respond to mechanical stimuli caused by blood flow to maintain vascular homeostasis. Although the oxygen level in vascular microenvironment is lower than the atmospheric one, the cellular dynamics of ECs under hypoxic and flow exposure are not fully understood. Here, we describe a microfluidic platform for the reproduction hypoxic vascular microenvironments. Simultaneous application of hypoxic stress and fluid shear stress to the cultured cells was achieved by integrating a microfluidic device and a flow channel that adjusted the initial oxygen concentration in a cell culture medium. An EC monolayer was then formed on the media channel in the device, and the ECs were observed after exposure to hypoxic and flow conditions. The migration velocity of the ECs immediately increased after flow exposure, especially in the direction opposite to the flow direction, and gradually decreased, resulting in the lowest value under the hypoxic and flow exposure condition. The ECs after 6-h simultaneous exposure to hypoxic stress and fluid shear stress were generally aligned and elongated in the flow direction, with enhanced VE-cadherin expression and actin filament assembly. Thus, the developed microfluidic platform is useful for investigating the dynamics of ECs in vascular microenvironments.
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Affiliation(s)
- Naoyuki Takahashi
- Graduate School of Biomedical Engineering, Tohoku University, 6-6-12 Aramaki-aza Aoba, Aoba-ku, Sendai, Miyagi, 980-8579, Japan
- Institute of Fluid Science, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai, Miyagi, 980-8577, Japan
| | - Daisuke Yoshino
- Institute of Engineering, Tokyo University of Agriculture and Technology, 2-24-16 Naka-cho, Koganei, Tokyo, 184-8588, Japan
| | - Ryuji Sugahara
- Graduate School of Biomedical Engineering, Tohoku University, 6-6-12 Aramaki-aza Aoba, Aoba-ku, Sendai, Miyagi, 980-8579, Japan
- Institute of Fluid Science, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai, Miyagi, 980-8577, Japan
| | - Satomi Hirose
- Graduate School of Biomedical Engineering, Tohoku University, 6-6-12 Aramaki-aza Aoba, Aoba-ku, Sendai, Miyagi, 980-8579, Japan
- Institute of Fluid Science, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai, Miyagi, 980-8577, Japan
| | - Kazuki Sone
- Graduate School of Biomedical Engineering, Tohoku University, 6-6-12 Aramaki-aza Aoba, Aoba-ku, Sendai, Miyagi, 980-8579, Japan
- Institute of Fluid Science, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai, Miyagi, 980-8577, Japan
| | - Jean-Paul Rieu
- Institut Lumière Matière, UMR5306, Université Lyon 1-CNRS, Université de Lyon, 69622, Villeurbanne, France
| | - Kenichi Funamoto
- Graduate School of Biomedical Engineering, Tohoku University, 6-6-12 Aramaki-aza Aoba, Aoba-ku, Sendai, Miyagi, 980-8579, Japan.
- Institute of Fluid Science, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai, Miyagi, 980-8577, Japan.
- Graduate School of Engineering, Tohoku University, 6-6-1 Aramaki-aza Aoba, Aoba-ku, Sendai, Miyagi, 980-8597, Japan.
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48
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Lu X, Rainforth T, Teh YW. Daisee: Adaptive importance sampling by balancing exploration and exploitation. Scand Stat Theory Appl 2023. [DOI: 10.1111/sjos.12637] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/07/2023]
Affiliation(s)
- Xiaoyu Lu
- Amazon London EC2A 2FA UK
- University of Oxford Oxford UK
| | - Tom Rainforth
- Department of Statistics University of Oxford Oxford OX1 2JD UK
| | - Yee Whye Teh
- Department of Statistics University of Oxford Oxford OX1 2JD UK
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49
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Meier D, Ragunathan R, Degener S, Liehr A, Vollmer M, Niendorf T, Sick B. Reconstruction of incomplete X-ray diffraction pole figures of oligocrystalline materials using deep learning. Sci Rep 2023; 13:5410. [PMID: 37012276 PMCID: PMC10070271 DOI: 10.1038/s41598-023-31580-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2022] [Accepted: 03/14/2023] [Indexed: 04/05/2023] Open
Abstract
X-ray diffraction crystallography allows non-destructive examination of crystal structures. Furthermore, it has low requirements regarding surface preparation, especially compared to electron backscatter diffraction. However, up to now, X-ray diffraction has been highly time-consuming in standard laboratory conditions since intensities on multiple lattice planes have to be recorded by rotating and tilting. Furthermore, examining oligocrystalline materials is challenging due to the limited number of diffraction spots. Moreover, commonly used evaluation methods for crystallographic orientation analysis need multiple lattice planes for a reliable pole figure reconstruction. In this article, we propose a deep-learning-based method for oligocrystalline specimens, i.e., specimens with up to three grains of arbitrary crystal orientations. Our approach allows faster experimentation due to accurate reconstructions of pole figure regions, which we did not probe experimentally. In contrast to other methods, the pole figure is reconstructed based on only a single incomplete pole figure. To speed up the development of our proposed method and for usage in other machine learning algorithms, we introduce a GPU-based simulation for data generation. Furthermore, we present a pole widths standardization technique using a custom deep learning architecture that makes algorithms more robust against influences from the experiment setup and material.
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Affiliation(s)
- David Meier
- Optik und Strahlrohre, Helmholtz-Zentrum Berlin für Materialien und Energie GmbH, Hahn-Meitner-Platz 1, 14109, Berlin, Germany.
- Intelligent Embedded Systems, University of Kassel, Wilhelmshöher Allee 73, 34121, Kassel, Hessen, Germany.
| | - Rishan Ragunathan
- Intelligent Embedded Systems, University of Kassel, Wilhelmshöher Allee 73, 34121, Kassel, Hessen, Germany
| | - Sebastian Degener
- Institute of Materials Engineering, Metallic Materials, University of Kassel, Mönchebergstraße 3, 34125, Kassel, Hessen, Germany
| | - Alexander Liehr
- Institute of Materials Engineering, Metallic Materials, University of Kassel, Mönchebergstraße 3, 34125, Kassel, Hessen, Germany
| | - Malte Vollmer
- Institute of Materials Engineering, Metallic Materials, University of Kassel, Mönchebergstraße 3, 34125, Kassel, Hessen, Germany
| | - Thomas Niendorf
- Institute of Materials Engineering, Metallic Materials, University of Kassel, Mönchebergstraße 3, 34125, Kassel, Hessen, Germany
| | - Bernhard Sick
- Intelligent Embedded Systems, University of Kassel, Wilhelmshöher Allee 73, 34121, Kassel, Hessen, Germany.
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50
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Saisavadas MV, Dhara S, Joshi RG, Tata BVR. Large amplitude oscillatory shear studies on dense PNIPAM microgel colloidal glasses. Colloid Polym Sci 2023. [DOI: 10.1007/s00396-023-05096-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/05/2023]
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