Hydrogen-Bonded Helical Hydrazide Oligomers and Polymer That Mimic the Ion Transport of Gramicidin A

Making Molecular and Macromolecular Helical Tubes: Covalent and Noncovalent Approaches

Aromatic foldamers possess well-defined cavity that can be stabilized by discrete intramolecular interactions including hydrogen bonding, solvophobicity, electrostatic repulsion, or coordination. Long foldamers can form dynamic deep helical tubular architectures that are not only structurally attractive but also useful hosts for guest encapsulation, chirality induction, delivery, and catalysis. This kind of helical tubular structures can be formed by single molecules or macromolecules or by connecting short-folded or helical segments through noncovalent or covalent forces. This perspective summarizes the recent advances on the construction of helical tubes and their properties and functions.

Sensing, Transport and Other Potential Biomedical Applications of Pseudopeptides

Pseudopeptides are privileged synthetic molecules built from the designed combination of peptide-like and abiotic artificial moieties. Consequently, they are benefited from the advantages of both families of chemical structures: modular synthesis, chemical and functional diversity, tailored three-dimensional structure, usually high stability in biological media and low non-specific toxicity. Accordingly, in the last years, these compounds have been used for different biomedical applications, ranging from bio-sensing, ion transport, the molecular recognition of biologically relevant species, drug delivery or gene transfection. This review highlights a selection of the most remarkable and recent advances in this field.

Design, synthesis, and biological evaluation of stable β6.3-Helices: Discovery of non-hemolytic antibacterial peptides

Gramicidin A, a topical antibiotic made from alternating L and D amino acids, is characterized by its wide central pore; upon insertion into membranes, it forms channels that disrupts ion gradients. We present helical peptidomimetics with this characteristic wide central pore that have been designed to mimic gramicidin A channels. Mimetics were designed using molecular modeling focused on oligomers of heterochiral dipeptides of proline analogs, in particular azaproline (AzPro). Molecular Dynamics simulations in water confirmed the stability of the designed helices. A sixteen-residue Formyl-(AzPro-Pro)₈-NHCH₂CH₂OH helix was synthesized as well as a full thirty-two residue Cbz-(AzPro-Pro)₁₆-O^tBu channels. No liposomal lysis activity was observed suggesting lack of channel formation, possibly due to inappropriate hydrogen-bonding interactions in the membrane. These peptidomimetics also did not hemolyze red blood cells, unlike gramicidin A.

Photoresponsive supramolecular polymers based on quadruple hydrogen-bonding and a photochromic azobenzene motif

A photoresponsive quadruple hydrogen-bonded supramolecular polymer was constructed using photochromic azobenzene and ureidopyrimidinone motifs.

Molecular Mechanism of Self-Assembly of Aromatic Oligoamides into Interlocked Double-Helix Foldamers

Foldamer, inspired by the structures and functions of biopolymers, is defined as an artificial molecular architecture that can fold into a three-dimensional structure in solution and has been a growing and active field in supramolecular chemistry. The central issue in foldamer science is to understand how the primary sequence of oligomer folds into conformationally ordered structures as well as how individual subunits self-associate into assembly. For duplex structures, these two issues are always interrelated and inseparable with each other. Although the emergence of new foldamer keeps growing, the detailed mechanism remains elusive. On the basis of an artificially synthesized arylamide oligoamide foldamer with its crystal structure available, we constructed a set of four foldamers with a similar backbone but different substituents and aimed at dissecting the folding and self-association mechanisms of a double-helical foldamer with computations. Using molecular simulations at a microsecond time scale, we observed very consistent processes of the spontaneous self-assembly of two single-helical motifs into an entwined complex. Our results reveal that aggregation of two single-helical motifs driven by extensive π-π interactions is energetically favorable and that this spontaneous self-assembly proceeds through an "unwinding-threading-rewinding" mechanism. The detailed mechanisms about the folding and self-assembly in an aromatic oligoamide foldamer we present here disclose how the sequence is associated with a well-ordered three-dimensional structure at atomic level and therefore may have implications for designing new foldamers with versatile functions.

Pillararene-Based Aggregation-Induced-Emission-Active Supramolecular System for Simultaneous Detection and Removal of Mercury(II) in Water

Supramolecular polymers are polymers based on monomeric units held together with directional and reversible noncovalent interactions. Compared with traditional polymers, they possess better processability and better recycling properties, owing to their reversible monomer-to-polymer transition. Herein, we report the construction of a new supramolecular system through self-assembly of a thymine-substituted copillar[5]arene 1 and a tetraphenylethylene (TPE) derivative 2 in the presence of Hg²⁺. Copillar[5]arene 1 can coordinate with Hg²⁺ tightly through T-Hg²⁺-T pairings. On the other hand, 1 can bind with guest molecule 2 through host-guest interactions between the pillararene cavity and the nitrile moiety of 2. These joint interactions generate crisscrossed networks composed of 1, 2, and Hg²⁺, which eventually wrap into spherical nanoparticles. Due to the aggregation-induced emission (AIE) properties of 2, the formed supramolecular polymer exhibits strong fluorescence which renders convenient the detection of the Hg²⁺-containing nanoparticles and the subsequent removal procedure. Furthermore, the polymer precipitate can be readily isolated by simple treatment, and the pseudorotaxane 2 ⊂ 1 can be recycled and reused. Our study has demonstrated a practical strategy for the sensing and removal of heavy metal ions in water by the construction of supramolecular polymers.

Surprisingly High Selectivity and High Affinity in Mercury Recognition by H-Bonded Cavity-Containing Aromatic Foldarands

In the absence of macrocyclic ring constraints, few synthetic systems, possessing a mostly solvent-independent well-folded conformation that is predisposed for highly selective and high affinity recognition of metal ions, have been demonstrated. We report here such a unique class of conformationally robust modularly tunable folding molecules termed foldarands that can recognize Hg²⁺ ions surprisingly well over 22 other metal ions. Despite the lack of sulfur atoms and having only oxygen-donor atoms in its structure, the best foldarand molecule, i.e., tetramer 4, exhibits a selectivity factor of at least 19 in differentiating the most tightly bound Hg²⁺ ion from all other metal ions, and a binding capacity that is ≥18 times that of thio-crown ethers. These two noteworthy binding characters make possible low level removal of Hg²⁺ ions. With a [4]:[Hg²⁺] molar ratio of 5:1 and a single biphasic solvent extraction, the concentration of Hg²⁺ ions could be reduced drastically by 98% (from 200 to 4 ppb) in pure water. 4 could also effect a highly efficient reduction in mercury content by 98% (from 500 to 10 ppb) in artificial groundwater via multiple successive extractions with an overall consumption of 4 being 9:1 in terms of [4]:[Hg²⁺] molar ratio.

Functionalized hydrazide macrocycle ion channels showing pH-sensitive ion selectivities

The protonation and deprotonation of multiple amines and carboxyls in channels change the charge distribution, which leads to pH-sensitive ion selectivity.

One-pot formation of hydrazide macrocycles with modified cavities: an example of pH-sensitive unimolecular cation channels

The number and position of carboxyls in the channel have a significant impact on the membrane-incorporation ability, ion selectivity and NH₄⁺ transport activity of the macrocyclic channels.

Supramolecular Helical Systems: Helical Assemblies of Small Molecules, Foldamers, and Polymers with Chiral Amplification and Their Functions

In this review, we describe the recent advances in supramolecular helical assemblies formed from chiral and achiral small molecules, oligomers (foldamers), and helical and nonhelical polymers from the viewpoints of their formations with unique chiral phenomena, such as amplification of chirality during the dynamic helically assembled processes, properties, and specific functionalities, some of which have not been observed in or achieved by biological systems. In addition, a brief historical overview of the helical assemblies of small molecules and remarkable progress in the synthesis of single-stranded and multistranded helical foldamers and polymers, their properties, structures, and functions, mainly since 2009, will also be described.

Polymeric Tubular Structures

Nature makes use of tubular structures for the spatial separation of matter on many different length scales, ranging from the nanometer scale (selective channels based on folded proteins) up to the centimeter scale (blood vessels). Today, polymer chemists and engineers can prepare polymeric tubular structures via a variety of different methods also covering many lengthscales, from nanometers to meters. The synthetic approaches described in this chapter vary significantly from the folding of single polymer chains via the self-assembly of DNA fragments to coordinative metal-organic nanotubes to tubes engineerd from bulk polymers using a range of porous or fibrous templates. While all examples reported in this chapter form tubular structures and thereby mimic their naturally occuring counterparts, it is mainly the engineered tubes that are more straightforward to prepare that also show some bio-inspired function.

Artificial water channels – incipient innovative developments

This Feature Article discusses the incipient developments of the first artificial water channels, including only systems that integrate synthetic elements in their water selective translocation unit.

Supramolecular chemistry: from aromatic foldamers to solution-phase supramolecular organic frameworks

This mini-review covers the growth, education, career, and research activities of the author. In particular, the developments of various folded, helical and extended secondary structures from aromatic backbones driven by different noncovalent forces (including hydrogen bonding, donor-acceptor, solvophobicity, and dimerization of conjugated radical cations) and solution-phase supramolecular organic frameworks driven by hydrophobically initiated aromatic stacking in the cavity of cucurbit[8]uril (CB[8]) are highlighted.

Highly Selective Artificial Cholesteryl Crown Ether K(+)-Channels

The bacterial KcsA channel conducts K(+) cations at high rates while excluding Na(+) cations. Herein, we report an artificial ion-channel formed by H-bonded stacks of crown-ethers, where K(+) cation conduction is highly preferred to Na(+) cations. The macrocycles aligned along the central pore surround the K(+) cations in a similar manner to the water around the hydrated cation, compensating for the energetic cost of their dehydration. In contrast, the Na(+) cation does not fit the macrocyclic binding sites, so its dehydration is not completely compensated. The present highly K(+)-selective macrocyclic channel may be regarded as a biomimetic of the KcsA channel.

Tubular Unimolecular Transmembrane Channels: Construction Strategy and Transport Activities

Lipid bilayer membranes separate living cells from their environment. Membrane proteins are responsible for the processing of ion and molecular inputs and exports, sensing stimuli and signals across the bilayers, which may operate in a channel or carrier mechanism. Inspired by these wide-ranging functions of membrane proteins, chemists have made great efforts in constructing synthetic mimics in order to understand the transport mechanisms, create materials for separation, and develop therapeutic agents. Since the report of an alkylated cyclodextrin for transporting Cu(2+) and Co(2+) by Tabushi and co-workers in 1982, chemists have constructed a variety of artificial transmembrane channels by making use of either the multimolecular self-assembly or unimolecular strategy. In the context of the design of unimolecular channels, important advances have been made, including, among others, the tethering of natural gramicidin A or alamethicin and the modification of various macrocycles such as crown ethers, cyclodextrins, calixarenes, and cucurbiturils. Many of these unimolecular channels exhibit high transport ability for metal ions, particularly K(+) and Na(+). Concerning the development of artificial channels based on macrocyclic frameworks, one straightforward and efficient approach is to introduce discrete chains to reinforce their capability to insert into bilayers. Currently, this approach has found the widest applications in the systems of crown ethers and calixarenes. We envisioned that for macrocycle-based unimolecular channels, control of the arrangement of the appended chains in the upward and/or downward direction would favor the insertion of the molecular systems into bilayers, while the introduction of additional interactions among the chains would further stabilize a tubular conformation. Both factors should be helpful for the formation of new efficient channels. In this Account, we discuss our efforts in designing new unimolecular artificial channels from tubular pillar[n]arenes by extending their lengths with various ester, hydrazide, and short peptide chains. We have utilized well-defined pillar[5]arene and pillar[6]arene as rigid frameworks that allow the appended chains to afford extended tubular structures. We demonstrate that the hydrazide and peptide chains form intramolecular N-H···O═C hydrogen bonds that enhance the tubular conformation of the whole molecule. The new pillar[n]arene derivatives have been successfully applied as unimolecular channels for the selective transport of protons, water, and amino acids and the voltage-gated transport of K(+). We also show that aromatic hydrazide helices and macrocycles appended with peptide chains are able to mediate the selective transport of NH4(+).

Hydrophobically driven twist sense bias of hollow helical foldamers of aromatic hydrazide polymers in water

Aromatic hydrazide polymers bearingS-chiral tetraethylene glycol chains can fold into M hollow helices in water driven by the hydrophobicity.

Efficient synthetic supramolecular channels and their light-deactivated ion transport in bilayer lipid membranes

Efficient ion transport and photo-deactivation was achieved from the self-assembled channel of o-nitrobenzyl-based amphiphilic small molecules.

Hydrazide macrocycles as effective transmembrane channels for ammonium

The cavity of aromatic hydrazide macrocycles is tuned by appended Phe peptide chains to form deformable channels for efficient transport of NH₄⁺.

Helical folding of an arylamide polymer in water and organic solvents of varying polarity

An arylamide polymer is driven by the solvophobicity and hydrogen bonding to form helical conformation in solvents of different polarity.