51
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Evidence for nucleotide-dependent processes in the thylakoid lumen of plant chloroplasts--an update. FEBS Lett 2012; 586:2946-54. [PMID: 22796491 DOI: 10.1016/j.febslet.2012.07.005] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2012] [Revised: 07/04/2012] [Accepted: 07/05/2012] [Indexed: 12/21/2022]
Abstract
The thylakoid lumen is an aqueous chloroplast compartment enclosed by the thylakoid membrane network. Bioinformatic and proteomic studies indicated the existence of 80-90 thylakoid lumenal proteins in Arabidopsis thaliana, having photosynthetic, non-photosynthetic or unclassified functions. None of the identified lumenal proteins had canonical nucleotide-binding motifs. It was therefore suggested that, in contrast to the chloroplast stroma harboring nucleotide-dependent enzymes and other proteins, the thylakoid lumen is a nucleotide-free compartment. Based on recent findings, we provide here an updated view about the presence of nucleotides in the thylakoid lumen of plant chloroplasts, and their role in function and dynamics of photosynthetic complexes.
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52
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Lepistö A, Rintamäki E. Coordination of plastid and light signaling pathways upon development of Arabidopsis leaves under various photoperiods. MOLECULAR PLANT 2012; 5:799-816. [PMID: 22199239 PMCID: PMC3399700 DOI: 10.1093/mp/ssr106] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2011] [Accepted: 11/25/2011] [Indexed: 05/19/2023]
Abstract
Plants synchronize their cellular and physiological functions according to the photoperiod (the length of the light period) in the cycle of 24 h. Photoperiod adjusts several traits in the plant life cycle, including flowering and senescence in annuals and seasonal growth cessation in perennials. Photoperiodic development is controlled by the coordinated action of photoreceptors and the circadian clock. During the past 10 years, remarkable progress has been made in understanding the molecular mechanism of the circadian clock, especially with regard to the transition of Arabidopsis from the vegetative growth to the reproductive phase. Besides flowering photoperiod also modifies plant photosynthetic structures and traits. Light signals controlling biogenesis of chloroplasts and development of leaf photosynthetic structures are perceived both by photoreceptors and in chloroplasts. In this review, we provide evidence suggesting that the photoperiodic development of Arabidopsis leaves mimics the acclimation of plant to various light intensities. Furthermore, the chloroplast-to-nucleus retrograde signals that adjust acclimation to light intensity are proposed to contribute also to the signaling pathways that control photoperiodic acclimation of leaves.
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Affiliation(s)
| | - Eevi Rintamäki
- Molecular Plant Biology, Department of Biochemistry and Food Chemistry, University of Turku, FI-20014 Turku, Finland
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53
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Kim SK, You YN, Park JC, Joung Y, Kim BG, Ahn JC, Cho HS. The rice thylakoid lumenal cyclophilin OsCYP20-2 confers enhanced environmental stress tolerance in tobacco and Arabidopsis. PLANT CELL REPORTS 2012; 31:417-26. [PMID: 22041789 DOI: 10.1007/s00299-011-1176-x] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/29/2011] [Revised: 10/06/2011] [Accepted: 10/12/2011] [Indexed: 05/20/2023]
Abstract
The role that the putative thylakoid lumenal cyclophilin (CYP) CYP20-2 locates in the thylakoid, and whether CYP20-2 is an essential gene, have not yet been elucidated. Here, we show that CYP20-2 is well conserved in several photosynthetic plants and that the transcript level of the rice OsCYP20-2 gene is highly regulated under abiotic stress. We found that ectopic expression of rice OsCYP20-2 in both tobacco and Arabidopsis confers enhanced tolerance to osmotic stress and extremely high light. Based on these results, we suggest that although the exact biochemical function of OsCYP20-2 in the thylakoid lumen (TL) remains unclear, it may be involved in photosynthetic acclimation to help plants cope with environmental stress; the OsCYP20-2 gene may be a candidate for enhancing multiple abiotic stress tolerance.
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MESH Headings
- Adaptation, Physiological/drug effects
- Adaptation, Physiological/genetics
- Adaptation, Physiological/radiation effects
- Amino Acid Sequence
- Arabidopsis/drug effects
- Arabidopsis/genetics
- Arabidopsis/physiology
- Arabidopsis/radiation effects
- Conserved Sequence/genetics
- Cyclophilins/chemistry
- Cyclophilins/genetics
- Cyclophilins/metabolism
- Droughts
- Environment
- Gene Expression Regulation, Plant/drug effects
- Gene Expression Regulation, Plant/radiation effects
- Genes, Plant/genetics
- Light
- Molecular Sequence Data
- NADPH Dehydrogenase/metabolism
- Oryza/drug effects
- Oryza/metabolism
- Oryza/radiation effects
- Paraquat/pharmacology
- Peptidylprolyl Isomerase/metabolism
- Photosystem II Protein Complex/metabolism
- Phylogeny
- Plant Proteins/chemistry
- Plant Proteins/genetics
- Plant Proteins/metabolism
- Plants, Genetically Modified
- Sequence Alignment
- Stress, Physiological/drug effects
- Stress, Physiological/genetics
- Stress, Physiological/radiation effects
- Thylakoids/drug effects
- Thylakoids/enzymology
- Thylakoids/metabolism
- Thylakoids/radiation effects
- Nicotiana/drug effects
- Nicotiana/genetics
- Nicotiana/physiology
- Nicotiana/radiation effects
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Affiliation(s)
- Se-Kyong Kim
- Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 305-806, Korea
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54
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Gollan PJ, Ziemann M, Bhave M. PPIase activities and interaction partners of FK506-binding proteins in the wheat thylakoid. PHYSIOLOGIA PLANTARUM 2011; 143:385-395. [PMID: 21848652 DOI: 10.1111/j.1399-3054.2011.01503.x] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
FK506-binding proteins (FKBPs) and cyclophilins, collectively called immunophilins, conserve peptidyl-prolyl cis/trans isomerase (PPIase) active sites, although many lack PPIase activity. The chloroplast thylakoid contains a large proportion of the plant immunophilin family, but their functions within this compartment are unclear. Some lumenal immunophilins are important for assembly of photosynthetic complexes, implicating them in the maintenance and turnover of the photosynthetic apparatus during acclimation processes. In this investigation into the functions of three FKBPs localized to the thylakoid of Triticum aestivum (wheat), we present the first evidence of PPIase activity in the thylakoid of a cereal plant, and also show that PPIase activity is not conserved in all lumenal FKBPs. Using yeast two-hybrid analysis we found that the PPIase-active FKBP13 interacts with the globular domain of the wheat Rieske protein, with potential impact on photosynthetic electron transfer. Specific interaction partners for PPIase-deficient FKBP16-1 and FKBP16-3 link these isoforms to photosystem assembly.
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Affiliation(s)
- Peter J Gollan
- Environment and Biotechnology Centre, Faculty of Life and Social Sciences, Swinburne University of Technology, PO Box 218, Hawthorn, VIC 3122, Australia
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55
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Fan P, Feng J, Jiang P, Chen X, Bao H, Nie L, Jiang D, Lv S, Kuang T, Li Y. Coordination of carbon fixation and nitrogen metabolism in
Salicornia europaea
under salinity: Comparative proteomic analysis on chloroplast proteins. Proteomics 2011; 11:4346-67. [DOI: 10.1002/pmic.201100054] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2011] [Revised: 08/16/2011] [Accepted: 08/18/2011] [Indexed: 12/30/2022]
Affiliation(s)
- Pengxiang Fan
- Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, P. R. China
| | - Juanjuan Feng
- Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, P. R. China
| | - Ping Jiang
- Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, P. R. China
| | - Xianyang Chen
- Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, P. R. China
| | - Hexigeduleng Bao
- Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, P. R. China
| | - Lingling Nie
- Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, P. R. China
| | - Dan Jiang
- Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, P. R. China
| | - Sulian Lv
- Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, P. R. China
| | - Tingyun Kuang
- Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, P. R. China
| | - Yinxin Li
- Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, P. R. China
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56
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Ford KL, Cassin A, Bacic A. Quantitative proteomic analysis of wheat cultivars with differing drought stress tolerance. FRONTIERS IN PLANT SCIENCE 2011; 2:44. [PMID: 22639595 PMCID: PMC3355674 DOI: 10.3389/fpls.2011.00044] [Citation(s) in RCA: 97] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2011] [Accepted: 08/13/2011] [Indexed: 05/18/2023]
Abstract
Using a series of multiplexed experiments we studied the quantitative changes in protein abundance of three Australian bread wheat cultivars (Triticum aestivum L.) in response to a drought stress. Three cultivars differing in their ability to maintain grain yield during drought, Kukri (intolerant), Excalibur (tolerant), and RAC875 (tolerant), were grown in the glasshouse with cyclic drought treatment that mimicked conditions in the field. Proteins were isolated from leaves of mature plants and isobaric tags were used to follow changes in the relative protein abundance of 159 proteins. This is the first shotgun proteomics study in wheat, providing important insights into protein responses to drought as well as identifying the largest number of wheat proteins (1,299) in a single study. The changes in the three cultivars at the different time points reflected their differing physiological responses to drought, with the two drought tolerant varieties (Excalibur and RAC875) differing in their protein responses. Excalibur lacked significant changes in proteins during the initial onset of the water deficit in contrast to RAC875 that had a large number of significant changes. All three cultivars had changes consistent with an increase in oxidative stress metabolism and reactive O(2) species (ROS) scavenging capacity seen through increases in superoxide dismutases and catalases as well as ROS avoidance through the decreases in proteins involved in photosynthesis and the Calvin cycle.
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Affiliation(s)
- Kristina L. Ford
- Australian Centre for Plant Functional Genomics, School of Botany, University of MelbourneParkville, VIC, Australia
- The Australian Research Council Centre of Excellence in Plant Cell Walls, School of Botany, University of MelbourneParkville, VIC, Australia
| | - Andrew Cassin
- Australian Centre for Plant Functional Genomics, School of Botany, University of MelbourneParkville, VIC, Australia
| | - Antony Bacic
- Australian Centre for Plant Functional Genomics, School of Botany, University of MelbourneParkville, VIC, Australia
- The Australian Research Council Centre of Excellence in Plant Cell Walls, School of Botany, University of MelbourneParkville, VIC, Australia
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57
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Tikkanen M, Aro EM. Thylakoid protein phosphorylation in dynamic regulation of photosystem II in higher plants. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2011; 1817:232-8. [PMID: 21605541 DOI: 10.1016/j.bbabio.2011.05.005] [Citation(s) in RCA: 136] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/13/2011] [Revised: 05/08/2011] [Accepted: 05/09/2011] [Indexed: 01/22/2023]
Abstract
In higher plants, the photosystem (PS) II core and its several light harvesting antenna (LHCII) proteins undergo reversible phosphorylation cycles according to the light intensity. High light intensity induces strong phosphorylation of the PSII core proteins and suppresses the phosphorylation level of the LHCII proteins. Decrease in light intensity, in turn, suppresses the phosphorylation of PSII core, but strongly induces the phosphorylation of LHCII. Reversible and differential phosphorylation of the PSII-LHCII proteins is dependent on the interplay between the STN7 and STN8 kinases, and the respective phosphatases. The STN7 kinase phosphorylates the LHCII proteins and to a lesser extent also the PSII core proteins D1, D2 and CP43. The STN8 kinase, on the contrary, is rather specific for the PSII core proteins. Mechanistically, the PSII-LHCII protein phosphorylation is required for optimal mobility of the PSII-LHCII protein complexes along the thylakoid membrane. Physiologically, the phosphorylation of LHCII is a prerequisite for sufficient excitation of PSI, enabling the excitation and redox balance between PSII and PSI under low irradiance, when excitation energy transfer from the LHCII antenna to the two photosystems is efficient and thermal dissipation of excitation energy (NPQ) is minimised. The importance of PSII core protein phosphorylation is manifested under highlight when the photodamage of PSII is rapid and phosphorylation is required to facilitate the migration of damaged PSII from grana stacks to stroma lamellae for repair. The importance of thylakoid protein phosphorylation is highlighted under fluctuating intensity of light where the STN7 kinase dependent balancing of electron transfer is a prerequisite for optimal growth and development of the plant. This article is part of a Special Issue entitled: Photosystem II.
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Affiliation(s)
- Mikko Tikkanen
- Department of Biochemistry and Food Chemistry, University of Turku, Finland
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58
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Mulo P, Sakurai I, Aro EM. Strategies for psbA gene expression in cyanobacteria, green algae and higher plants: from transcription to PSII repair. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2011; 1817:247-57. [PMID: 21565160 DOI: 10.1016/j.bbabio.2011.04.011] [Citation(s) in RCA: 135] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/11/2011] [Revised: 04/06/2011] [Accepted: 04/07/2011] [Indexed: 11/26/2022]
Abstract
The Photosystem (PS) II of cyanobacteria, green algae and higher plants is prone to light-induced inactivation, the D1 protein being the primary target of such damage. As a consequence, the D1 protein, encoded by the psbA gene, is degraded and re-synthesized in a multistep process called PSII repair cycle. In cyanobacteria, a small gene family codes for the various, functionally distinct D1 isoforms. In these organisms, the regulation of the psbA gene expression occurs mainly at the level of transcription, but the expression is fine-tuned by regulation of translation elongation. In plants and green algae, the D1 protein is encoded by a single psbA gene located in the chloroplast genome. In chloroplasts of Chlamydomonas reinhardtii the psbA gene expression is strongly regulated by mRNA processing, and particularly at the level of translation initiation. In chloroplasts of higher plants, translation elongation is the prevalent mechanism for regulation of the psbA gene expression. The pre-existing pool of psbA transcripts forms translation initiation complexes in plant chloroplasts even in darkness, while the D1 synthesis can be completed only in the light. Replacement of damaged D1 protein requires also the assistance by a number of auxiliary proteins, which are encoded by the nuclear genome in green algae and higher plants. Nevertheless, many of these chaperones are conserved between prokaryotes and eukaryotes. Here, we describe the specific features and fundamental differences of the psbA gene expression and the regeneration of the PSII reaction center protein D1 in cyanobacteria, green algae and higher plants. This article is part of a Special Issue entitled Photosystem II.
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Affiliation(s)
- Paula Mulo
- Department of Biochemistry and Food Chemistry, University of Turku, Finland.
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59
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Lu Y, Hall DA, Last RL. A small zinc finger thylakoid protein plays a role in maintenance of photosystem II in Arabidopsis thaliana. THE PLANT CELL 2011; 23:1861-75. [PMID: 21586683 PMCID: PMC3123961 DOI: 10.1105/tpc.111.085456] [Citation(s) in RCA: 56] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2011] [Revised: 03/22/2011] [Accepted: 04/25/2011] [Indexed: 05/18/2023]
Abstract
This work identifies LOW QUANTUM YIELD OF PHOTOSYSTEM II1 (LQY1), a Zn finger protein that shows disulfide isomerase activity, interacts with the photosystem II (PSII) core complex, and may act in repair of photodamaged PSII complexes. Two mutants of an unannotated small Zn finger containing a thylakoid membrane protein of Arabidopsis thaliana (At1g75690; LQY1) were found to have a lower quantum yield of PSII photochemistry and reduced PSII electron transport rate following high-light treatment. The mutants dissipate more excess excitation energy via nonphotochemical pathways than wild type, and they also display elevated accumulation of reactive oxygen species under high light. After high-light treatment, the mutants have less PSII-light-harvesting complex II supercomplex than wild-type plants. Analysis of thylakoid membrane protein complexes showed that wild-type LQY1 protein comigrates with the PSII core monomer and the CP43-less PSII monomer (a marker for ongoing PSII repair and reassembly). PSII repair and reassembly involve the breakage and formation of disulfide bonds among PSII proteins. Interestingly, the recombinant LQY1 protein demonstrates a protein disulfide isomerase activity. LQY1 is more abundant in stroma-exposed thylakoids, where key steps of PSII repair and reassembly take place. The absence of the LQY1 protein accelerates turnover and synthesis of PSII reaction center protein D1. These results suggest that the LQY1 protein may be involved in maintaining PSII activity under high light by regulating repair and reassembly of PSII complexes.
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Affiliation(s)
- Yan Lu
- Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan 48824
| | - David A. Hall
- Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan 48824
| | - Robert L. Last
- Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan 48824
- Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824
- Address correspondence to
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60
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Chen G, Allahverdiyeva Y, Aro EM, Styring S, Mamedov F. Electron paramagnetic resonance study of the electron transfer reactions in photosystem II membrane preparations from Arabidopsis thaliana. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2011; 1807:205-15. [DOI: 10.1016/j.bbabio.2010.10.010] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2010] [Revised: 10/06/2010] [Accepted: 10/08/2010] [Indexed: 10/18/2022]
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61
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Ahn JC, Kim DW, You YN, Seok MS, Park JM, Hwang H, Kim BG, Luan S, Park HS, Cho HS. Classification of rice (Oryza sativa L. Japonica nipponbare) immunophilins (FKBPs, CYPs) and expression patterns under water stress. BMC PLANT BIOLOGY 2010; 10:253. [PMID: 21087465 PMCID: PMC3012604 DOI: 10.1186/1471-2229-10-253] [Citation(s) in RCA: 59] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/01/2010] [Accepted: 11/18/2010] [Indexed: 05/20/2023]
Abstract
BACKGROUND FK506 binding proteins (FKBPs) and cyclophilins (CYPs) are abundant and ubiquitous proteins belonging to the peptidyl-prolyl cis/trans isomerase (PPIase) superfamily, which regulate much of metabolism through a chaperone or an isomerization of proline residues during protein folding. They are collectively referred to as immunophilin (IMM), being present in almost all cellular organs. In particular, a number of IMMs relate to environmental stresses. RESULTS FKBP and CYP proteins in rice (Oryza sativa cv. Japonica) were identified and classified, and given the appropriate name for each IMM, considering the ortholog-relation with Arabidopsis and Chlamydomonas or molecular weight of the proteins. 29 FKBP and 27 CYP genes can putatively be identified in rice; among them, a number of genes can be putatively classified as orthologs of Arabidopsis IMMs. However, some genes were novel, did not match with those of Arabidopsis and Chlamydomonas, and several genes were paralogs by genetic duplication. Among 56 IMMs in rice, a significant number are regulated by salt and/or desiccation stress. In addition, their expression levels responding to the water-stress have been analyzed in different tissues, and some subcellular IMMs located by means of tagging with GFP protein. CONCLUSION Like other green photosynthetic organisms such as Arabidopsis (23 FKBPs and 29 CYPs) and Chlamydomonas (23 FKBs and 26 CYNs), rice has the highest number of IMM genes among organisms reported so far, suggesting that the numbers relate closely to photosynthesis. Classification of the putative FKBPs and CYPs in rice provides the information about their evolutional/functional significance when comparisons are drawn with the relatively well studied genera, Arabidopsis and Chlamydomonas. In addition, many of the genes upregulated by water stress offer the possibility of manipulating the stress responses in rice.
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Affiliation(s)
- Jun Cheul Ahn
- Department of Biological Science, Seonam University, Namwon 590-711, Korea
| | - Dae-Won Kim
- Genome Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon 305-306, Korea
| | - Young Nim You
- Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon 305-506, Korea
| | - Min Sook Seok
- Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon 305-506, Korea
| | - Jeong Mee Park
- Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon 305-506, Korea
| | - Hyunsik Hwang
- Bio-crops Development Division, National Academy of Agricultural Science, RDA, Suwon, Korea
| | - Beom-Gi Kim
- Bio-crops Development Division, National Academy of Agricultural Science, RDA, Suwon, Korea
| | - Sheng Luan
- Department of Plant and Microbial Biology, University of California, Berkeley, California 94720, USA
| | - Hong-Seog Park
- Genome Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon 305-306, Korea
| | - Hye Sun Cho
- Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon 305-506, Korea
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62
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Armbruster U, Zühlke J, Rengstl B, Kreller R, Makarenko E, Rühle T, Schünemann D, Jahns P, Weisshaar B, Nickelsen J, Leister D. The Arabidopsis thylakoid protein PAM68 is required for efficient D1 biogenesis and photosystem II assembly. THE PLANT CELL 2010; 22:3439-60. [PMID: 20923938 PMCID: PMC2990134 DOI: 10.1105/tpc.110.077453] [Citation(s) in RCA: 102] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/17/2010] [Revised: 09/04/2010] [Accepted: 09/21/2010] [Indexed: 05/20/2023]
Abstract
Photosystem II (PSII) is a multiprotein complex that functions as a light-driven water:plastoquinone oxidoreductase in photosynthesis. Assembly of PSII proceeds through a number of distinct intermediate states and requires auxiliary proteins. The photosynthesis affected mutant 68 (pam68) of Arabidopsis thaliana displays drastically altered chlorophyll fluorescence and abnormally low levels of the PSII core subunits D1, D2, CP43, and CP47. We show that these phenotypes result from a specific decrease in the stability and maturation of D1. This is associated with a marked increase in the synthesis of RC (the PSII reaction center-like assembly complex) at the expense of PSII dimers and supercomplexes. PAM68 is a conserved integral membrane protein found in cyanobacterial and eukaryotic thylakoids and interacts in split-ubiquitin assays with several PSII core proteins and known PSII assembly factors. Biochemical analyses of thylakoids from Arabidopsis and Synechocystis sp PCC 6803 suggest that, during PSII assembly, PAM68 proteins associate with an early intermediate complex that might contain D1 and the assembly factor LPA1. Inactivation of cyanobacterial PAM68 destabilizes RC but does not affect larger PSII assembly complexes. Our data imply that PAM68 proteins promote early steps in PSII biogenesis in cyanobacteria and plants, but their inactivation is differently compensated for in the two classes of organisms.
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Affiliation(s)
- Ute Armbruster
- Lehrstuhl für Molekularbiologie der Pflanzen (Botanik), Department Biologie I, Ludwig-Maximilians-Universität, 82152 Martinsried, Germany
| | - Jessica Zühlke
- Lehrstuhl für Molekularbiologie der Pflanzen (Botanik), Department Biologie I, Ludwig-Maximilians-Universität, 82152 Martinsried, Germany
| | - Birgit Rengstl
- Molekulare Pflanzenwissenschaften, Department Biologie I, Ludwig-Maximilians-Universität, 82152 Martinsried, Germany
| | - Renate Kreller
- Lehrstuhl für Molekularbiologie der Pflanzen (Botanik), Department Biologie I, Ludwig-Maximilians-Universität, 82152 Martinsried, Germany
| | - Elina Makarenko
- Lehrstuhl für Molekularbiologie der Pflanzen (Botanik), Department Biologie I, Ludwig-Maximilians-Universität, 82152 Martinsried, Germany
| | - Thilo Rühle
- Lehrstuhl für Molekularbiologie der Pflanzen (Botanik), Department Biologie I, Ludwig-Maximilians-Universität, 82152 Martinsried, Germany
| | - Danja Schünemann
- AG Molekularbiologie Pflanzlicher Organellen, Ruhr-Universität-Bochum, 44801 Bochum, Germany
| | - Peter Jahns
- Institute of Plant Biochemistry, Heinrich-Heine University Düsseldorf, 40225 Düsseldorf, Germany
| | - Bernd Weisshaar
- Lehrstuhl für Genomforschung, Fakultät für Biology, Universität Bielefeld, 33615 Bielefeld, Germany
| | - Jörg Nickelsen
- Molekulare Pflanzenwissenschaften, Department Biologie I, Ludwig-Maximilians-Universität, 82152 Martinsried, Germany
| | - Dario Leister
- Lehrstuhl für Molekularbiologie der Pflanzen (Botanik), Department Biologie I, Ludwig-Maximilians-Universität, 82152 Martinsried, Germany
- Address correspondence to
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63
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Cai W, Ma J, Chi W, Zou M, Guo J, Lu C, Zhang L. Cooperation of LPA3 and LPA2 is essential for photosystem II assembly in Arabidopsis. PLANT PHYSIOLOGY 2010; 154:109-20. [PMID: 20605914 PMCID: PMC2938160 DOI: 10.1104/pp.110.159558] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/22/2010] [Accepted: 07/05/2010] [Indexed: 05/19/2023]
Abstract
Photosystem II (PSII) is a multisubunit membrane protein complex that is assembled in a sequence of steps. However, the molecular mechanisms responsible for the assembly of the individual subunits into functional PSII complexes are still largely unknown. Here, we report the identification of a chloroplast protein, Low PSII Accumulation3 (LPA3), which is required for the assembly of the CP43 subunit in PSII complexes in Arabidopsis (Arabidopsis thaliana). LPA3 interacts with LPA2, a previously identified PSII CP43 assembly factor, and a double mutation of LPA2 and LPA3 is more deleterious for assembly than either single mutation, resulting in a seedling-lethal phenotype. Our results indicate that LPA3 and LPA2 have overlapping functions in assisting CP43 assembly and that cooperation between LPA2 and LPA3 is essential for PSII assembly. In addition, we provide evidence that LPA2 and LPA3 interact with Albino3 (Alb3), which is essential for thylakoid protein biogenesis. Thus, the function of Alb3 in some PSII assembly processes is probably mediated through interactions with LPA2 and LPA3.
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Affiliation(s)
| | | | | | | | | | | | - Lixin Zhang
- Photosynthesis Research Center, Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
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64
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Ifuku K, Ishihara S, Sato F. Molecular functions of oxygen-evolving complex family proteins in photosynthetic electron flow. JOURNAL OF INTEGRATIVE PLANT BIOLOGY 2010; 52:723-34. [PMID: 20666928 DOI: 10.1111/j.1744-7909.2010.00976.x] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
Abstract
Oxygen-evolving complex (OEC) protein is the original name for membrane-peripheral subunits of photosystem (PS) II. Recently, multiple isoforms and homologs for OEC proteins have been identified in the chloroplast thylakoid lumen, indicating that functional diversification has occurred in the OEC family. Gene expression profiles suggest that the Arabidopsis OEC proteins are roughly categorized into three groups: the authentic OEC group, the stress-responsive group, and the group including proteins related to the chloroplast NAD(P)H dehydrogenase (NDH) complex involved in cyclic electron transport around PSI. Based on the above gene expression profiles, molecular functions of the OEC family proteins are discussed together with our current knowledge about their functions.
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Affiliation(s)
- Kentaro Ifuku
- Graduate School of Biostudies, Kyoto University, Sakyo-ku, Kyoto, Japan.
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65
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Gollan PJ, Bhave M. A thylakoid-localised FK506-binding protein in wheat may be linked to chloroplast biogenesis. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2010; 48:655-662. [PMID: 20570161 DOI: 10.1016/j.plaphy.2010.05.002] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/07/2009] [Revised: 04/21/2010] [Accepted: 05/03/2010] [Indexed: 05/29/2023]
Abstract
Plant chloroplasts contain a large proportion of immunophilins, comprising the FK506-binding proteins (FKBPs) and cyclophilins (CYPs), which are members of the peptidyl-prolyl cis/trans isomerase (PPIase) family of proline-folding enzymes. Some of the chloroplastic immunophilins are known to chaperone certain photosynthetic proteins, however the functions of a majority of these proteins are unknown. This work focussed on characterisation of genes encoding the chloroplast-localised FKBP16-1 from wheat and its progenitor species, and identification of its putative promoters, as well as investigations into the effects of light regulation and plant development on its expression. The work identified several alternatively spliced FKBP16-1 transcripts, indicating expression of FKBP16-1 may be post-transcriptionally regulated. FKBP16-1 was expressed in both green and etiolated tissues, and highest levels were detected in developing tissues, indicating a role in chloroplast biogenesis. We also report a novel transcription module, designated 'chloroplast biogenesis module' (CBM) in the FKBP16-1 promoter of cereals that also appears to be involved in the regulation of additional genes involved in chloroplast biogenesis or other aspects of plant development. The results point to considerable potential for a role for FKBP16-1 in early chloroplast development, architecture of photosynthetic apparatus and plant development.
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Affiliation(s)
- Peter J Gollan
- Environment and Biotechnology Centre, Faculty of Life and Social Sciences, Swinburne University of Technology, P O Box 218, Hawthorn, Victoria 3122, Australia
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66
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Hall M, Mata-Cabana A, Akerlund HE, Florencio FJ, Schröder WP, Lindahl M, Kieselbach T. Thioredoxin targets of the plant chloroplast lumen and their implications for plastid function. Proteomics 2010; 10:987-1001. [PMID: 20049866 DOI: 10.1002/pmic.200900654] [Citation(s) in RCA: 64] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
The light-dependent regulation of stromal enzymes by thioredoxin (Trx)-catalysed disulphide/dithiol exchange is known as a classical mechanism for control of chloroplast metabolism. Recent proteome studies show that Trx targets are present not only in the stroma but in all chloroplast compartments, from the envelope to the thylakoid lumen. Trx-mediated redox control appears to be a common feature of important pathways, such as the Calvin cycle, starch synthesis and tetrapyrrole biosynthesis. However, the extent of thiol-dependent redox regulation in the thylakoid lumen has not been previously systematically explored. In this study, we addressed Trx-linked redox control in the chloroplast lumen of Arabidopsis thaliana. Using complementary proteomics approaches, we identified 19 Trx target proteins, thus covering more than 40% of the currently known lumenal chloroplast proteome. We show that the redox state of thiols is decisive for degradation of the extrinsic PsbO1 and PsbO2 subunits of photosystem II. Moreover, disulphide reduction inhibits activity of the xanthophyll cycle enzyme violaxanthin de-epoxidase, which participates in thermal dissipation of excess absorbed light. Our results indicate that redox-controlled reactions in the chloroplast lumen play essential roles in the function of photosystem II and the regulation of adaptation to light intensity.
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Affiliation(s)
- Michael Hall
- Department of Chemistry, Umea3 University, Umea3, Sweden
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67
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Yabuta S, Ifuku K, Takabayashi A, Ishihara S, Ido K, Ishikawa N, Endo T, Sato F. Three PsbQ-like proteins are required for the function of the chloroplast NAD(P)H dehydrogenase complex in Arabidopsis. PLANT & CELL PHYSIOLOGY 2010; 51:866-76. [PMID: 20430763 DOI: 10.1093/pcp/pcq060] [Citation(s) in RCA: 48] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Arabidopsis has three PsbQ-like (PQL) proteins in addition to the PsbQ subunit of the oxygen-evolving complex of PSII. Recent bioinformatic and proteomic studies suggested that the two PQL proteins, PQL1 (At1g14150) and PQL2 (At3g01440), might function in the chloroplast NAD(P)H dehydrogenase (NDH) complex; however, their molecular function has not been characterized. In this study, we examined the function of the chloroplast NDH in the Arabidopsis pql1 and pql2 mutants. Post-illumination increases in Chl fluorescence, which are caused by an NDH-dependent cyclic electron flow, were absent in both mutants, indicating that PQL1 and PQL2 are required for NDH activity. In the thylakoid membranes of wild-type plants, PQL1 and PQL2 were tightly associated with the NDH-PSI supercomplex and protected from protease treatments, while unassembled PQLs were not stably accumulated in mutants lacking known NDH subunits. Subunit stability of the NDH complex was affected differently in the thylakoid membranes of the pql1 and pql2 mutants. These data indicate that PQL1 and PQL2 are novel NDH subunits and differ in their functional roles and in their binding sites in the NDH complex. Furthermore, functional analysis on PQL3 (At2g01918) using the pql3 mutant suggests that PQL3 is also required for NDH activity. Proteins homologous to each PQL protein are found in various plant species, but not in cyanobacteria, algae, mosses or ferns. These results suggest that seed plants that have NDH activity in chloroplasts specifically developed three PQL proteins for the function of the chloroplast NDH complex.
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Affiliation(s)
- Shinya Yabuta
- Graduate School of Biostudies, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan
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68
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Shipman-Roston RL, Ruppel NJ, Damoc C, Phinney BS, Inoue K. The significance of protein maturation by plastidic type I signal peptidase 1 for thylakoid development in Arabidopsis chloroplasts. PLANT PHYSIOLOGY 2010; 152:1297-308. [PMID: 20097790 PMCID: PMC2832241 DOI: 10.1104/pp.109.151977] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2009] [Accepted: 01/19/2010] [Indexed: 05/20/2023]
Abstract
Thylakoids are the chloroplast internal membrane systems that house light-harvesting and electron transport reactions. Despite the important functions and well-studied constituents of thylakoids, the molecular mechanism of their development remains largely elusive. A recent genetic study has demonstrated that plastidic type I signal peptidase 1 (Plsp1) is vital for proper thylakoid development in Arabidopsis (Arabidopsis thaliana) chloroplasts. Plsp1 was also shown to be necessary for processing of an envelope protein, Toc75, and a thylakoid lumenal protein, OE33; however, the relevance of the protein maturation in both of the two distinct subcompartments for proper chloroplast development remained unknown. Here, we conducted an extensive analysis of the plsp1-null mutant to address the significance of lumenal protein maturation in thylakoid development. Plastids that lack Plsp1 were found to accumulate vesicles of variable sizes in the stroma. Analyses of the mutant plastids revealed that the lack of Plsp1 causes a reduction in accumulation of thylakoid proteins and that Plsp1 is involved in maturation of two additional lumenal proteins, OE23 and plastocyanin. Further immunoblotting and electron microscopy immunolocalization studies showed that OE33 associates with the stromal vesicles of the mutant plastids. Finally, we used a genetic complementation system to demonstrate that accumulation of improperly processed forms of Toc75 in the plastid envelope does not disrupt normal plant development. These results suggest that proper maturation of lumenal proteins may be a key process for correct assembly of thylakoids.
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69
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Suorsa M, Sirpiö S, Aro EM. Towards characterization of the chloroplast NAD(P)H dehydrogenase complex. MOLECULAR PLANT 2009; 2:1127-40. [PMID: 19995722 DOI: 10.1093/mp/ssp052] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
The NAD(P)H dehydrogenase (NDH) complex in chloroplast thylakoid membranes functions in cyclic electron transfer, and in chlororespiration. NDH is composed of at least 15 subunits, including both chloroplast- and nuclear-encoded proteins. During the past few years, extensive proteomic and genetic research on the higher plant NDH complex has been carried out, resulting in identification of several novel nuclear-encoded subunits. In addition, a number of auxiliary proteins, which mainly regulate the expression of chloroplast-encoded ndh genes as well as the assembly and stabilization of the NDH complex, have been discovered and characterized. In the absence of detailed crystallographic data, the structure of the NDH complex has remained obscure, and therefore the role of several NDH-associated nuclear-encoded proteins either as auxiliary proteins or structural subunits remains uncertain. In this review, we summarize the current knowledge on the subunit composition and assembly process of the chloroplast NDH complex. In addition, a novel oligomeric structure of NDH, the PSI/NDH supercomplex, is discussed.
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Affiliation(s)
- Marjaana Suorsa
- Department of Biology, Plant Physiology and Molecular Biology, University of Turku, FI-20014 Turku, Finland
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70
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Ingelsson B, Shapiguzov A, Kieselbach T, Vener AV. Peptidyl–Prolyl Isomerase Activity in Chloroplast Thylakoid Lumen is a Dispensable Function of Immunophilins in Arabidopsis thaliana. ACTA ACUST UNITED AC 2009; 50:1801-14. [DOI: 10.1093/pcp/pcp122] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
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71
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Sirpiö S, Holmström M, Battchikova N, Aro EM. AtCYP20-2 is an auxiliary protein of the chloroplast NAD(P)H dehydrogenase complex. FEBS Lett 2009; 583:2355-8. [PMID: 19549520 DOI: 10.1016/j.febslet.2009.06.031] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2009] [Revised: 05/28/2009] [Accepted: 06/17/2009] [Indexed: 11/17/2022]
Abstract
AtCYP20-2 is one of 16 immunophilins in thylakoid lumen. The presence of the isomerase domain in AtCYP20-2, an enrichment of AtCYP20-2 in the stroma membranes and it's co-migration with NAD(P)H dehydrogenase (NDH) in native gels provide evidence that AtCYP20-2 is an auxiliary protein of NDH. When different NDH mutants were studied, AtCYP20-2 was found to be strongly reduced especially in mutants deficient in the membrane domain of NDH, thus suggesting a role in the assembly of NDH hydrophobic domain. Lack of AtCYP20-2, however, did not lead to severe malfunction of NDH, indicating redundancy in the function of lumenal immunophilins.
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Affiliation(s)
- Sari Sirpiö
- Department of Biology, Plant Physiology and Molecular Biology, University of Turku, FI-20014 Turku, Finland
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72
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Allahverdiyeva Y, Mamedov F, Holmström M, Nurmi M, Lundin B, Styring S, Spetea C, Aro EM. Comparison of the electron transport properties of the psbo1 and psbo2 mutants of Arabidopsis thaliana. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2009; 1787:1230-7. [PMID: 19486880 DOI: 10.1016/j.bbabio.2009.05.013] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2009] [Revised: 05/22/2009] [Accepted: 05/27/2009] [Indexed: 11/16/2022]
Abstract
Genome sequence of Arabidopsis thaliana (Arabidopsis) revealed two psbO genes (At5g66570 and At3g50820) which encode two distinct PsbO isoforms: PsbO1 and PsbO2, respectively. To get insights into the function of the PsbO1 and PsbO2 isoforms in Arabidopsis we have performed systematic and comprehensive investigations of the whole photosynthetic electron transfer chain in the T-DNA insertion mutant lines, psbo1 and psbo2. The absence of the PsbO1 isoform and presence of only the PsbO2 isoform in the psbo1 mutant results in (i) malfunction of both the donor and acceptor sides of Photosystem (PS) II and (ii) high sensitivity of PSII centers to photodamage, thus implying the importance of the PsbO1 isoform for proper structure and function of PSII. The presence of only the PsbO2 isoform in the PSII centers has consequences not only to the function of PSII but also to the PSI/PSII ratio in thylakoids. These results in modification of the whole electron transfer chain with higher rate of cyclic electron transfer around PSI, faster induction of NPQ and a larger size of the PQ-pool compared to WT, being in line with apparently increased chlororespiration in the psbo1 mutant plants. The presence of only the PsbO1 isoform in the psbo2 mutant did not induce any significant differences in the performance of PSII under standard growth conditions as compared to WT. Nevertheless, under high light illumination, it seems that the presence of also the PsbO2 isoform becomes favourable for efficient repair of the PSII complex.
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Affiliation(s)
- Yagut Allahverdiyeva
- Department of Biology, Plant Physiology and Molecular Biology, University of Turku, Turku, Finland
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73
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Cai W, Ma J, Guo J, Zhang L. Function of ROC4 in the Efficient Repair of Photodamaged Photosystem II inArabidopsis†. Photochem Photobiol 2008; 84:1343-8. [DOI: 10.1111/j.1751-1097.2008.00448.x] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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74
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Mulo P, Sirpiö S, Suorsa M, Aro EM. Auxiliary proteins involved in the assembly and sustenance of photosystem II. PHOTOSYNTHESIS RESEARCH 2008; 98:489-501. [PMID: 18618287 DOI: 10.1007/s11120-008-9320-3] [Citation(s) in RCA: 93] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/21/2008] [Accepted: 06/11/2008] [Indexed: 05/20/2023]
Abstract
Chloroplast proteins that regulate the biogenesis, performance and acclimation of the photosynthetic protein complexes are currently under intense research. Dozens, possibly even hundreds, of such proteins in the stroma, thylakoid membrane and the lumen assist the biogenesis and constant repair of the water splitting photosystem (PS) II complex. During the repair cycle, assistance is required at several levels including the degradation of photodamaged D1 protein, de novo synthesis, membrane insertion, folding of the nascent protein chains and the reassembly of released protein subunits and different co-factors into PSII in order to guarantee the maintenance of the PSII function. Here we review the present knowledge of the auxiliary proteins, which have been reported to be involved in the biogenesis and maintenance of PSII.
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Affiliation(s)
- Paula Mulo
- Department of Biology, Laboratory of Plant Physiology and Molecular Biology, University of Turku, 20014 Turku, Finland
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75
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Tikkanen M, Nurmi M, Kangasjärvi S, Aro EM. Core protein phosphorylation facilitates the repair of photodamaged photosystem II at high light. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2008; 1777:1432-7. [PMID: 18774768 DOI: 10.1016/j.bbabio.2008.08.004] [Citation(s) in RCA: 138] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/29/2008] [Revised: 07/30/2008] [Accepted: 08/07/2008] [Indexed: 11/18/2022]
Abstract
Phosphorylation of photosystem II (PSII) reaction center protein D1 has been hypothesised to function as a signal for the migration of photodamaged PSII core complex from grana membranes to stroma lamellae for concerted degradation and replacement of the photodamaged D1 protein. Here, by using the mutants with impaired capacity (stn8) or complete lack (stn7 stn8) in phosphorylation of PSII core proteins, the role of phosphorylation in PSII photodamage and repair was investigated. We show that the lack of PSII core protein phosphorylation disturbs the disassembly of PSII supercomplexes at high light, which is a prerequisite for efficient migration of damaged PSII complexes from grana to stroma lamellae for repair. This results in accumulation of photodamaged PSII complexes, which in turn results, upon prolonged exposure to high light (HL), in general oxidative damage of photosynthetic proteins in the thylakoid membrane.
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Affiliation(s)
- Mikko Tikkanen
- Plant Physiology and Molecular Biology, Department of Biology, University of Turku, FIN-20014 Turku, Finland
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