101
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Sandoval-Denis M, Lombard L, Crous P. Back to the roots: a reappraisal of Neocosmospora. PERSOONIA 2019; 43:90-185. [PMID: 32214499 PMCID: PMC7085857 DOI: 10.3767/persoonia.2019.43.04] [Citation(s) in RCA: 70] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/27/2019] [Accepted: 07/16/2019] [Indexed: 11/25/2022]
Abstract
The genus Neocosmospora (Fusarium solani species complex) contains saprobes, plant endophytes and pathogens of major economic significance as well as opportunistic animal pathogens. Advances in biological and phylogenetic species recognition revealed a rich species diversity which has largely remained understudied. Most of the currently recognised species lack formal descriptions and Latin names, while the taxonomic utility of old names is hampered by the lack of nomenclatural type specimens. Therefore, to stabilise the taxonomy and nomenclature of these important taxa, we examined type specimens and representative cultures of several old names by means of morphology and phylogenetic analyses based on rDNA (ITS and LSU), rpb2 and tef1 sequences. Sixty-eight species are accepted in Neocosmospora, 29 of them described herein as new; while 13 new combinations are made. Eleven additional phylogenetic species are recognized, but remain as yet undescribed. Lectotypes are proposed for eight species, seven species are epitypified and two species are neotypified. Notes on an additional 17 doubtful or excluded taxa are provided.
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Affiliation(s)
- M. Sandoval-Denis
- Westerdijk Fungal Biodiversity Institute, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands
- Faculty of Natural and Agricultural Sciences, Department of Plant Sciences, University of the Free State, P.O. Box 339, Bloemfontein 9300, South Africa
| | - L. Lombard
- Westerdijk Fungal Biodiversity Institute, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands
| | - P.W. Crous
- Westerdijk Fungal Biodiversity Institute, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands
- Faculty of Natural and Agricultural Sciences, Department of Plant Sciences, University of the Free State, P.O. Box 339, Bloemfontein 9300, South Africa
- Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands
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102
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Hassan O, Lee YS, Chang T. Colletotrichum Species Associated with Japanese Plum (Prunus salicina) Anthracnose in South Korea. Sci Rep 2019; 9:12089. [PMID: 31427596 PMCID: PMC6700192 DOI: 10.1038/s41598-019-48108-1] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2018] [Accepted: 07/29/2019] [Indexed: 11/21/2022] Open
Abstract
A total of 24 Colletotrichum isolates were isolated from diseased Japanese plum (Prunus salicina) fruits showing chlorotic regions with whitish-brown sunken necrotic lesions and phylogenetic relationships among the collected Colletotrichum isolates were determined. A subset of 11 isolates was chosen for further taxonomic study based on morphology and molecular characteristics identified using the internal transcribed spacer (ITS) and beta-tubulin (TUB2) genes. Isolates in the C. acutatum complex were analyzed using partial sequencing of five gene regions (ITS, GAPDH, ACT, TUB2, and CHS), and C. gloeosporioides sensu lato (s.l.) isolates were analyzed using seven gene regions (ITS, TUB2, GAPDH, ACT, CAL, CHS-1, and ApMat). Morphological assessments in combination with phylogenetic analysis delineated four species of Colletotrichum including C. gloeosporioides sensu stricto (s.s.), C. nymphaeae, C. foriniae, and C. siamense; these data identify Colletotrichum fioriniae and C. siamense two new species associated with plum anthracnose in South Korea. Finally, the pathogenicity of these four species in the development of plum anthracnose in South Korea was confirmed by inoculations of plum fruit.
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Affiliation(s)
- Oliul Hassan
- Department of Ecology & Environmental System, College of Ecology & Environmental Sciences, Kyungpook National University, Sangju, Gyeongbuk, 37224, Republic of Korea
| | - Yong Se Lee
- Division of Life and Environmental Sciences, College of Life and Environmental Sciences, Daegu University, Gyeongsan, Gyeongbuk, 38453, Republic of Korea
| | - Taehyun Chang
- Department of Ecology & Environmental System, College of Ecology & Environmental Sciences, Kyungpook National University, Sangju, Gyeongbuk, 37224, Republic of Korea.
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103
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Zalar P, Zupančič J, Gostinčar C, Zajc J, de Hoog GS, De Leo F, Azua-Bustos A, Gunde-Cimerman N. The extremely halotolerant black yeast Hortaea werneckii - a model for intraspecific hybridization in clonal fungi. IMA Fungus 2019; 10:10. [PMID: 32647617 PMCID: PMC7325687 DOI: 10.1186/s43008-019-0007-5] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2019] [Accepted: 04/03/2019] [Indexed: 12/22/2022] Open
Abstract
The polymorphic black yeast Hortaea werneckii (Capnodiales, Ascomycota) is extremely halotolerant (growth from 0 to 30% [w/v] NaCl) and has been extensively studied as a model for halotolerance in Eukaryotes for over two decades. Its most frequent sources are hypersaline environments and adjacent sea-water habitats in temperate, subtropical and tropical climates. Although typically saprobic, H. werneckii can also act as a commensal coloniser on human skin, causing tinea nigra on hands and soles. Here, we report that addition of NaCl to culture media expands the growth range of H. werneckii to 37 °C, which explains its colonisation of human skin, with its increased salinity. The morphological and physiological plasticity/ versatility of H. werneckii indicate that a species complex might be involved. This was investigated in this polyphasic taxonomic analysis based on the global diversity of H. werneckii strains collected from hypersaline environments, and from humans and animals. Analysis of D1/D2domains of 28S and internal transcribed spacer rDNA revealed 10 and 17 genotypes, respectively, that were not always compliant. The genotypes have global distributions. Human and environmental strains with the same genotypes are intermingled. Due to the limited number of phylogenetically informative characters in the ribosomal DNA dataset, the partial genes encoding for β-tubulin (BTB) and mini-chromosome maintenance protein (MCM7) were also sequenced. The use of these genes was hampered by ambiguous sequences obtained by Sanger sequencing, as a consequence of the diploid and highly heterozygous genome of many H. werneckii strains. Analysis of the BTB and MCM7 genes showed that in some cases two copies of the gene from the same genome are positioned in distant phylogenetic clusters of the intraspecific gene tree. Analysis of whole-genome sequences of selected H. werneckii strains generally confirmed the phylogenetic distances estimated on the basis of ribosomal genes, but also showed substantial reticulation within the phylogenetic history of the strains. This is in line with the hypothesis that the diploid genomes of H. werneckii were formed by hybridizations, which have sometimes occurred between relatively divergent strains.
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Affiliation(s)
- Polona Zalar
- Department of Biology, Biotechnical Faculty, University of Ljubljana, Večna pot 111, SI-1000 Ljubljana, Slovenia
| | - Jerneja Zupančič
- Department of Biology, Biotechnical Faculty, University of Ljubljana, Večna pot 111, SI-1000 Ljubljana, Slovenia
| | - Cene Gostinčar
- Department of Biology, Biotechnical Faculty, University of Ljubljana, Večna pot 111, SI-1000 Ljubljana, Slovenia
- Lars Bolund Institute of Regenerative Medicine, BGI-Qingdao, Qingdao, 266555 China
| | - Janja Zajc
- Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia
| | - G. Sybren de Hoog
- Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, Utrecht, 3508 AD The Netherlands
- Centre of Expertise in Mycology of RadboudUMC, Canisius Wilhelmina Hospital, Nijmegen, The Netherlands
| | - Filomena De Leo
- Department of Chemical, Biological, Pharmaceutical and Environmental Sciences (ChiBioFarAm), University of Messina, Viale F. Stagno d’Alcontres, 31 98166 Messina, Italy
| | - Armando Azua-Bustos
- Centro de Astrobiología (CSIC-INTA), Madrid, Spain
- Instituto de Ciencias Biomédicas, Facultad de Ciencias de la Salud, Universidad Autónoma de Chile, 8910060 Santiago, Chile
| | - Nina Gunde-Cimerman
- Department of Biology, Biotechnical Faculty, University of Ljubljana, Večna pot 111, SI-1000 Ljubljana, Slovenia
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104
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Fungal diversity notes 1036–1150: taxonomic and phylogenetic contributions on genera and species of fungal taxa. FUNGAL DIVERS 2019. [DOI: 10.1007/s13225-019-00429-2] [Citation(s) in RCA: 36] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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105
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Crous P, Carnegie A, Wingfield M, Sharma R, Mughini G, Noordeloos M, Santini A, Shouche Y, Bezerra J, Dima B, Guarnaccia V, Imrefi I, Jurjević Ž, Knapp D, Kovács G, Magistà D, Perrone G, Rämä T, Rebriev Y, Shivas R, Singh S, Souza-Motta C, Thangavel R, Adhapure N, Alexandrova A, Alfenas A, Alfenas R, Alvarado P, Alves A, Andrade D, Andrade J, Barbosa R, Barili A, Barnes C, Baseia I, Bellanger JM, Berlanas C, Bessette A, Bessette A, Biketova A, Bomfim F, Brandrud T, Bransgrove K, Brito A, Cano-Lira J, Cantillo T, Cavalcanti A, Cheewangkoon R, Chikowski R, Conforto C, Cordeiro T, Craine J, Cruz R, Damm U, de Oliveira R, de Souza J, de Souza H, Dearnaley J, Dimitrov R, Dovana F, Erhard A, Esteve-Raventós F, Félix C, Ferisin G, Fernandes R, Ferreira R, Ferro L, Figueiredo C, Frank J, Freire K, García D, Gené J, Gêsiorska A, Gibertoni T, Gondra R, Gouliamova D, Gramaje D, Guard F, Gusmão L, Haitook S, Hirooka Y, Houbraken J, Hubka V, Inamdar A, Iturriaga T, Iturrieta-González I, Jadan M, Jiang N, Justo A, Kachalkin A, Kapitonov V, Karadelev M, Karakehian J, Kasuya T, Kautmanová I, Kruse J, Kušan I, Kuznetsova T, Landell M, Larsson KH, Lee H, Lima D, Lira C, Machado A, Madrid H, Magalhães O, Majerova H, Malysheva E, Mapperson R, Marbach P, Martín M, Martín-Sanz A, Matočec N, McTaggart A, Mello J, Melo R, Mešić A, Michereff S, Miller A, Minoshima A, Molinero-Ruiz L, Morozova O, Mosoh D, Nabe M, Naik R, Nara K, Nascimento S, Neves R, Olariaga I, Oliveira R, Oliveira T, Ono T, Ordoñez M, Ottoni ADM, Paiva L, Pancorbo F, Pant B, Pawłowska J, Peterson S, Raudabaugh D, Rodríguez-Andrade E, Rubio E, Rusevska K, Santiago A, Santos A, Santos C, Sazanova N, Shah S, Sharma J, Silva B, Siquier J, Sonawane M, Stchigel A, Svetasheva T, Tamakeaw N, Telleria M, Tiago P, Tian C, Tkalčec Z, Tomashevskaya M, Truong H, Vecherskii M, Visagie C, Vizzini A, Yilmaz N, Zmitrovich I, Zvyagina E, Boekhout T, Kehlet T, Læssøe T, Groenewald J. Fungal Planet description sheets: 868-950. PERSOONIA 2019; 42:291-473. [PMID: 31551622 PMCID: PMC6712538 DOI: 10.3767/persoonia.2019.42.11] [Citation(s) in RCA: 92] [Impact Index Per Article: 18.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/01/2019] [Accepted: 05/10/2019] [Indexed: 12/11/2022]
Abstract
Novel species of fungi described in this study include those from various countries as follows: Australia, Chaetomella pseudocircinoseta and Coniella pseudodiospyri on Eucalyptus microcorys leaves, Cladophialophora eucalypti, Teratosphaeria dunnii and Vermiculariopsiella dunnii on Eucalyptus dunnii leaves, Cylindrium grande and Hypsotheca eucalyptorum on Eucalyptus grandis leaves, Elsinoe salignae on Eucalyptus saligna leaves, Marasmius lebeliae on litter of regenerating subtropical rainforest, Phialoseptomonium eucalypti (incl. Phialoseptomonium gen. nov.) on Eucalyptus grandis × camaldulensis leaves, Phlogicylindrium pawpawense on Eucalyptus tereticornis leaves, Phyllosticta longicauda as an endophyte from healthy Eustrephus latifolius leaves, Pseudosydowia eucalyptorum on Eucalyptus sp. leaves, Saitozyma wallum on Banksia aemula leaves, Teratosphaeria henryi on Corymbia henryi leaves. Brazil, Aspergillus bezerrae, Backusella azygospora, Mariannaea terricola and Talaromyces pernambucoensis from soil, Calonectria matogrossensis on Eucalyptus urophylla leaves, Calvatia brasiliensis on soil, Carcinomyces nordestinensis on Bromelia antiacantha leaves, Dendryphiella stromaticola on small branches of an unidentified plant, Nigrospora brasiliensis on Nopalea cochenillifera leaves, Penicillium alagoense as a leaf endophyte on a Miconia sp., Podosordaria nigrobrunnea on dung, Spegazzinia bromeliacearum as a leaf endophyte on Tilandsia catimbauensis, Xylobolus brasiliensis on decaying wood. Bulgaria, Kazachstania molopis from the gut of the beetle Molops piceus. Croatia, Mollisia endocrystallina from a fallen decorticated Picea abies tree trunk. Ecuador, Hygrocybe rodomaculata on soil. Hungary, Alfoldia vorosii (incl. Alfoldia gen. nov.) from Juniperus communis roots, Kiskunsagia ubrizsyi (incl. Kiskunsagia gen. nov.) from Fumana procumbens roots. India, Aureobasidium tremulum as laboratory contaminant, Leucosporidium himalayensis and Naganishia indica from windblown dust on glaciers. Italy, Neodevriesia cycadicola on Cycas sp. leaves, Pseudocercospora pseudomyrticola on Myrtus communis leaves, Ramularia pistaciae on Pistacia lentiscus leaves, Neognomoniopsis quercina (incl. Neognomoniopsis gen. nov.) on Quercus ilex leaves. Japan, Diaporthe fructicola on Passiflora edulis × P. edulis f. flavicarpa fruit, Entoloma nipponicum on leaf litter in a mixed Cryptomeria japonica and Acer spp. forest. Macedonia, Astraeus macedonicus on soil. Malaysia, Fusicladium eucalyptigenum on Eucalyptus sp. twigs, Neoacrodontiella eucalypti (incl. Neoacrodontiella gen. nov.) on Eucalyptus urophylla leaves. Mozambique, Meliola gorongosensis on dead Philenoptera violacea leaflets. Nepal, Coniochaeta dendrobiicola from Dendriobium lognicornu roots. New Zealand, Neodevriesia sexualis and Thozetella neonivea on Archontophoenix cunninghamiana leaves. Norway, Calophoma sandfjordenica from a piece of board on a rocky shoreline, Clavaria parvispora on soil, Didymella finnmarkica from a piece of Pinus sylvestris driftwood. Poland, Sugiyamaella trypani from soil. Portugal, Colletotrichum feijoicola from Acca sellowiana. Russia, Crepidotus tobolensis on Populus tremula debris, Entoloma ekaterinae, Entoloma erhardii and Suillus gastroflavus on soil, Nakazawaea ambrosiae from the galleries of Ips typographus under the bark of Picea abies. Slovenia, Pluteus ludwigii on twigs of broadleaved trees. South Africa, Anungitiomyces stellenboschiensis (incl. Anungitiomyces gen. nov.) and Niesslia stellenboschiana on Eucalyptus sp. leaves, Beltraniella pseudoportoricensis on Podocarpus falcatus leaf litter, Corynespora encephalarti on Encephalartos sp. leaves, Cytospora pavettae on Pavetta revoluta leaves, Helminthosporium erythrinicola on Erythrina humeana leaves, Helminthosporium syzygii on a Syzygium sp. bark canker, Libertasomyces aloeticus on Aloe sp. leaves, Penicillium lunae from Musa sp. fruit, Phyllosticta lauridiae on Lauridia tetragona leaves, Pseudotruncatella bolusanthi (incl. Pseudotruncatellaceae fam. nov.) and Dactylella bolusanthi on Bolusanthus speciosus leaves. Spain, Apenidiella foetida on submerged plant debris, Inocybe grammatoides on Quercus ilex subsp. ilex forest humus, Ossicaulis salomii on soil, Phialemonium guarroi from soil. Thailand, Pantospora chromolaenae on Chromolaena odorata leaves. Ukraine, Cadophora helianthi from Helianthus annuus stems. USA, Boletus pseudopinophilus on soil under slash pine, Botryotrichum foricae, Penicillium americanum and Penicillium minnesotense from air. Vietnam, Lycoperdon vietnamense on soil. Morphological and culture characteristics are supported by DNA barcodes.
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Affiliation(s)
- P.W. Crous
- Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD Utrecht, The Netherlands
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), Faculty of Natural and Agricultural Sciences, University of Pretoria, Private Bag X20, Hatfield 0028, Pretoria, South Africa
| | - A.J. Carnegie
- Forest Health & Biosecurity, NSW Department of Primary Industries, Forestry, Level 12, 10 Valentine Ave, Parramatta NSW 2150, Australia
| | - M.J. Wingfield
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), Faculty of Natural and Agricultural Sciences, University of Pretoria, Private Bag X20, Hatfield 0028, Pretoria, South Africa
| | - R. Sharma
- National Centre for Microbial Resource (NCMR), National Centre for Cell Science, S.P. Pune University, Ganeshkhind, Pune 411 007, Maharashtra, India
| | - G. Mughini
- Research Center for Forestry and Wood - C.R.E.A., Via Valle della Quistione 27, 00166 Rome, Italy
| | - M.E. Noordeloos
- Naturalis Biodiversity Center, section Botany, P.O. Box 9517, 2300 RA Leiden, The Netherlands
| | - A. Santini
- Institute for Sustainable Plant Protection - C.N.R., Via Madonna del Piano 10, 50019 Sesto fiorentino (FI), Italy
| | - Y.S. Shouche
- National Centre for Microbial Resource (NCMR), National Centre for Cell Science, S.P. Pune University, Ganeshkhind, Pune 411 007, Maharashtra, India
| | - J.D.P. Bezerra
- Departamento de Micologia, Universidade Federal de Pernambuco, Recife, Brazil
| | - B. Dima
- Department of Plant Anatomy, Institute of Biology, Eötvös Loránd University, 1117 Budapest, Pázmány Péter sétány 1/C, Hungary
| | - V. Guarnaccia
- DiSAFA, University of Torino, Largo Paolo Braccini, 2, 10095 Grugliasco, TO, Italy
| | - I. Imrefi
- Department of Plant Anatomy, Institute of Biology, Eötvös Loránd University, 1117 Budapest, Pázmány Péter sétány 1/C, Hungary
| | - Ž. Jurjević
- EMSL Analytical, Inc., 200 Route 130 North, Cinnaminson, NJ 08077, USA
| | - D.G. Knapp
- Department of Plant Anatomy, Institute of Biology, Eötvös Loránd University, 1117 Budapest, Pázmány Péter sétány 1/C, Hungary
| | - G.M. Kovács
- Department of Plant Anatomy, Institute of Biology, Eötvös Loránd University, 1117 Budapest, Pázmány Péter sétány 1/C, Hungary
| | - D. Magistà
- Institute of Sciences of Food Production, CNR, Via Amendola 122/O, 70126 Bari, Italy
| | - G. Perrone
- Institute of Sciences of Food Production, CNR, Via Amendola 122/O, 70126 Bari, Italy
| | - T. Rämä
- Marbio, Norwegian College of Fishery Science, University of Tromsø - The Arctic University of Norway
| | - Y.A. Rebriev
- South Scientific Center of the Russian Academy of Sciences, Rostov-on-Don, Russia
| | - R.G. Shivas
- Centre for Crop Health, University of Southern Queensland, Toowoomba 4350, Australia
| | - S.M. Singh
- National Centre for Antarctic and Ocean Research, Headland Sada, Vasco-da-Gama-403 804, Goa, India
- Banaras Hindu University (BHU), Uttar Pradesh, India
| | - C.M. Souza-Motta
- Departamento de Micologia, Universidade Federal de Pernambuco, Recife, Brazil
| | - R. Thangavel
- Plant Health and Environment Laboratory, Ministry for Primary Industries, P.O. Box 2095, Auckland 1140, New Zealand
| | - N.N. Adhapure
- Department of Biotechnology and Microbiology, Vivekanand Arts, Sardar Dalipsingh Commerce and Science College, Aurangabad 431001, Maharashtra, India
| | - A.V. Alexandrova
- Lomonosov Moscow State University (MSU), Faculty of Biology, 119234, 1, 12 Leninskie Gory Str., Moscow, Russia
- Joint Russian-Vietnamese Tropical Research and Technological Center, Hanoi, Vietnam
| | - A.C. Alfenas
- Departamento de Fitopatologia, Universidade Federal de Viçosa, Viçosa, Brazil
| | - R.F. Alfenas
- Departamento de Engenharia Florestal, Universidade Federal de Mato Grosso, Cuiabá, Brazil
| | - P. Alvarado
- ALVALAB, Avda. de Bruselas 2-3B, 33011 Oviedo, Spain
| | - A.L. Alves
- Departamento de Micologia, Universidade Federal de Pernambuco, Recife, Brazil
| | - D.A. Andrade
- Instituto de Ciências Biológicas e da Saúde – ICBS, Universidade Federal de Alagoas, Maceió, Brazil
| | - J.P. Andrade
- Universidade Estadual de Feira de Santana, Av. Transnordestina, S/N – Novo Horizonte, 44036-900 Feira de Santana, BA, Brazil
| | - R.N. Barbosa
- Departamento de Micologia, Universidade Federal de Pernambuco, Recife, Brazil
| | - A. Barili
- Escuela de Ciencias Biológicas, Pontificia Universidad Católica del Ecuador, Av. 12 de octubre 1076 y Roca, Quito, Ecuador
| | - C.W. Barnes
- Escuela de Ciencias Biológicas, Pontificia Universidad Católica del Ecuador, Av. 12 de octubre 1076 y Roca, Quito, Ecuador
| | - I.G. Baseia
- Departamento Botânica e Zoologia, Centro de Biociências, Universidade Federal do Rio Grande do Norte, Campus Universitário, 59072-970, Natal, RN, Brazil
| | - J.-M. Bellanger
- CEFE – CNRS – Université de Montpellier – Université Paul-Valéry Montpellier – EPHE – IRD – INSERM, Campus CNRS, 1919 Route de Mende, 34293 Montpellier, France
| | - C. Berlanas
- Instituto de Ciencias de la Vid y del Vino (Gobierno de La Rioja-CSIC-Universidad de La Rioja), Ctra. LO-20, Salida 13, 26007 Logroño, La Rioja, Spain
| | | | | | - A.Yu. Biketova
- Synthetic and Systems Biology Unit, Biological Research Centre, Hungarian Academy of Sciences, H-6726 Szeged, Hungary
| | - F.S. Bomfim
- Departamento de Micologia, Universidade Federal de Pernambuco, Recife, Brazil
| | - T.E. Brandrud
- Norwegian Institute for Nature Research, Gaustadalléen 21, NO-0349 Oslo, Norway
| | - K. Bransgrove
- Plant Pathology Herbarium, Department of Agriculture and Fisheries, Dutton Park 4102, Queensland, Australia
| | - A.C.Q. Brito
- Departamento de Micologia, Universidade Federal de Pernambuco, Recife, Brazil
| | - J.F. Cano-Lira
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili (URV), Sant Llorenç 21, 43201 Reus, Tarragona, Spain
| | - T. Cantillo
- Departamento de Ciências Biológicas, Universidade Estadual de Feira de Santana, Av. Transnordestina, S/N – Novo Horizonte, 44036-900 Feira de Santana, BA, Brazil
| | - A.D. Cavalcanti
- Departamento de Micologia, Universidade Federal de Pernambuco, Recife, Brazil
| | - R. Cheewangkoon
- Department of Entomology and Plant Pathology, Faculty of Agriculture, Chiang Mai University, Chiang Mai 50200, Thailand
| | - R.S. Chikowski
- Departamento de Micologia, Universidade Federal de Pernambuco, Recife, Brazil
| | - C. Conforto
- Instituto de Patología Vegetal, Instituto Nacional de Tecnología Agropecuaria, Córdoba, Argentina
| | - T.R.L. Cordeiro
- Departamento de Micologia, Universidade Federal de Pernambuco, Recife, Brazil
| | - J.D. Craine
- 5320 N. Peachtree Road, Dunwoody, GA 30338, USA
| | - R. Cruz
- Departamento de Micologia, Universidade Federal de Pernambuco, Recife, Brazil
| | - U. Damm
- Senckenberg Museum of Natural History Görlitz, PF 300 154, 02806 Görlitz, Germany
| | - R.J.V. de Oliveira
- Comissão Executiva do Plano da Lavoura Cacaueira (CEPLAC)/CEPEC, Itabuna, Bahia, Brazil
| | | | - H.G. de Souza
- Recôncavo da Bahia Federal University, Bahia, Brazil
| | - J.D.W. Dearnaley
- Centre for Crop Health, University of Southern Queensland, Toowoomba 4350, Australia
| | - R.A. Dimitrov
- National Center of Infectious and Parasitic Diseases, 26 Yanko Sakazov blvd, Sofia 1504, Bulgaria
| | - F. Dovana
- Department of Life Sciences and Systems Biology, University of Turin, Viale P.A. Mattioli 25, 10125, Torino, Italy
| | - A. Erhard
- EMSL Analytical, Inc., 200 Route 130 North, Cinnaminson, NJ 08077, USA
| | - F. Esteve-Raventós
- Departamento de Ciencias de la Vida (Area de Botánica), Universidad de Alcalá, 28805 Alcalá de Henares, Madrid, Spain
| | - C.R. Félix
- Instituto de Ciências Biológicas e da Saúde – ICBS, Universidade Federal de Alagoas, Maceió, Brazil
| | - G. Ferisin
- Via A. Vespucci 7, 1537, 33052 Cervignano del Friuli (UD), Italy
| | - R.A. Fernandes
- Departamento de Fitopatologia, Universidade Federal de Brasilia, Brasilia, Brazil
| | - R.J. Ferreira
- Departamento de Micologia, Universidade Federal de Pernambuco, Recife, Brazil
| | - L.O. Ferro
- Departamento de Micologia, Universidade Federal de Pernambuco, Recife, Brazil
| | | | - J.L. Frank
- Department of Biology, Southern Oregon University, Ashland OR 97520, USA
| | - K.T.L.S. Freire
- Departamento de Micologia, Universidade Federal de Pernambuco, Recife, Brazil
| | - D. García
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili (URV), Sant Llorenç 21, 43201 Reus, Tarragona, Spain
| | - J. Gené
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili (URV), Sant Llorenç 21, 43201 Reus, Tarragona, Spain
| | - A. Gêsiorska
- Department of Molecular Phylogenetics and Evolution, Faculty of Biology, Biological and Chemical Research Centre, University of Warsaw, ul. Zwirki i Wigury 101, 02-089 Warsaw, Poland
| | - T.B. Gibertoni
- Departamento de Micologia, Universidade Federal de Pernambuco, Recife, Brazil
| | - R.A.G. Gondra
- University Utrecht, P.O. Box 80125, 3508 TC Utrecht, The Netherlands
| | - D.E. Gouliamova
- The Stephan Angeloff Institute of Microbiology, Bulgarian Academy of Sciences, 26 Acad. Georgi Bonchev, Sofia 1113, Bulgaria
| | - D. Gramaje
- Instituto de Ciencias de la Vid y del Vino (Gobierno de La Rioja-CSIC-Universidad de La Rioja), Ctra. LO-20, Salida 13, 26007 Logroño, La Rioja, Spain
| | | | - L.F.P. Gusmão
- Departamento de Ciências Biológicas, Universidade Estadual de Feira de Santana, Av. Transnordestina, S/N – Novo Horizonte, 44036-900 Feira de Santana, BA, Brazil
| | - S. Haitook
- Department of Entomology and Plant Pathology, Faculty of Agriculture, Chiang Mai University, Chiang Mai 50200, Thailand
| | - Y. Hirooka
- Department of Clinical Plant Science, Faculty of Bioscience, Hosei University, 3-7-2 Kajino-cho, Koganei, Tokyo, Japan
| | - J. Houbraken
- Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD Utrecht, The Netherlands
| | - V. Hubka
- Department of Botany, Faculty of Science, Charles University, Benátská 2, 128 01 Prague 2, Czech Republic
- Laboratory of Fungal Genetics and Metabolism, Institute of Microbiology of the CAS, v.v.i, Vídeòská 1083, 142 20 Prague 4, Czech Republic
| | - A. Inamdar
- Department of Biotechnology and Microbiology, Vivekanand Arts, Sardar Dalipsingh Commerce and Science College, Aurangabad 431001, Maharashtra, India
| | - T. Iturriaga
- University of Illinois Urbana-Champaign, Illinois Natural History Survey, 1816 South Oak Street, Champaign, Illinois, 61820, USA
- Plant Pathology Herbarium, 334 Plant Science Building, Cornell University, Ithaca, NY 14853 USA
| | - I. Iturrieta-González
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili (URV), Sant Llorenç 21, 43201 Reus, Tarragona, Spain
| | - M. Jadan
- Ruđer Bošković Institute, Bijenička cesta 54, HR-10000 Zagreb, Croatia
| | - N. Jiang
- The Key Laboratory for Silviculture and Conservation of Ministry of Education, Beijing Forestry University, Beijing 100083, China
| | - A. Justo
- Department of Biology, Clark University, 950 Main St, Worcester, 01610, MA, USA
| | - A.V. Kachalkin
- Lomonosov Moscow State University, Moscow, Russia
- All-Russian Collection of Microorganisms, G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms RAS, Pushchino, Russia
| | - V.I. Kapitonov
- Tobolsk Complex Scientific Station of the Ural Branch of the Russian Academy of Sciences, 626152 Tobolsk, Russia
| | - M. Karadelev
- Institute of Biology, Faculty of Natural Sciences and Mathematics, Ss. Cyril and Methodius University, Skopje, Republic of Macedonia
| | - J. Karakehian
- Farlow Herbarium, Harvard University, 22 Divinity Avenue, Cambridge, MA 02138, USA
| | - T. Kasuya
- Department of Biology, Keio University, 4-1-1, Hiyoshi, Kohoku-ku, Yokohama, Kanagawa 223-8521, Japan
| | - I. Kautmanová
- Slovak National Museum-Natural History Museum, vjanaskeho nab. 2, P.O. Box 13, 81006 Bratislava, Slovakia
| | - J. Kruse
- Centre for Crop Health, University of Southern Queensland, Toowoomba 4350, Australia
| | - I. Kušan
- Ruđer Bošković Institute, Bijenička cesta 54, HR-10000 Zagreb, Croatia
| | - T.A. Kuznetsova
- A.N. Severtsov Institute of Ecology and Evolution RAS, Moscow, Russia
| | - M.F. Landell
- Instituto de Ciências Biológicas e da Saúde – ICBS, Universidade Federal de Alagoas, Maceió, Brazil
| | - K.-H. Larsson
- Natural History Museum, P.O. Box 1172 Blindern 0318, University of Oslo, Norway
| | - H.B. Lee
- Environmental Microbiology Lab, Division of Food Technology, Biotechnology & Agrochemistry, College of Agriculture and Life Sciences, Chonnam National University, Korea
| | - D.X. Lima
- Departamento de Micologia, Universidade Federal de Pernambuco, Recife, Brazil
| | - C.R.S. Lira
- Departamento de Micologia, Universidade Federal de Pernambuco, Recife, Brazil
| | - A.R. Machado
- Departamento de Micologia, Universidade Federal de Pernambuco, Recife, Brazil
| | - H. Madrid
- Centro de Genómica y Bioinformática, Facultad de Ciencias, Universidad Mayor, Camino La Pirámide 5750, Huechuraba, Santiago, Chile
| | - O.M.C. Magalhães
- Departamento de Micologia, Universidade Federal de Pernambuco, Recife, Brazil
| | - H. Majerova
- Faculty of Chemical and Food Technology, Biochemistry and Microbiology Department, Slovak University of Technology, Radlinského 9, 81237 Bratislava, Slovakia
| | - E.F. Malysheva
- Komarov Botanical Institute of the Russian Academy of Sciences, Saint Petersburg, Russia
| | - R.R. Mapperson
- Centre for Crop Health, University of Southern Queensland, Toowoomba 4350, Australia
| | | | - M.P. Martín
- Departamento de Micología, Real Jardín Botánico, RJB-CSIC, Plaza de Murillo 2, 28014 Madrid, Spain
| | - A. Martín-Sanz
- Pioneer Hi-Bred International, Inc., Campus Dupont – Pioneer, Ctra. Sevilla-Cazalla km 4.6, 41309 La Rinconada, Spain
| | - N. Matočec
- Ruđer Bošković Institute, Bijenička cesta 54, HR-10000 Zagreb, Croatia
| | - A.R. McTaggart
- Queensland Alliance for Agriculture and Food Innovation, University of Queensland, St Lucia 4069, Australia
| | - J.F. Mello
- Departamento de Micologia, Universidade Federal de Pernambuco, Recife, Brazil
| | - R.F.R. Melo
- Departamento de Micologia, Universidade Federal de Pernambuco, Recife, Brazil
| | - A. Mešić
- Ruđer Bošković Institute, Bijenička cesta 54, HR-10000 Zagreb, Croatia
| | - S.J. Michereff
- Centro de Ciências Agrárias e da Biodiversidade, Universidade Federal do Cariri, Ceará, Brazil
| | - A.N. Miller
- University of Illinois Urbana-Champaign, Illinois Natural History Survey, 1816 South Oak Street, Champaign, Illinois, 61820, USA
| | - A. Minoshima
- Department of Clinical Plant Science, Faculty of Bioscience, Hosei University, 3-7-2 Kajino-cho, Koganei, Tokyo, Japan
| | - L. Molinero-Ruiz
- Department of Crop Protection, Institute for Sustainable Agriculture, CSIC, 14004 Córdoba, Spain
| | - O.V. Morozova
- Komarov Botanical Institute of the Russian Academy of Sciences, Saint Petersburg, Russia
| | - D. Mosoh
- National Centre for Microbial Resource (NCMR), National Centre for Cell Science, S.P. Pune University, Ganeshkhind, Pune 411 007, Maharashtra, India
| | - M. Nabe
- 2-2-1, Sakuragaoka-nakamachi, Nishi-ku, Kobe, Hyogo 651-2226, Japan
| | - R. Naik
- National Centre for Antarctic and Ocean Research, Headland Sada, Vasco-da-Gama-403 804, Goa, India
| | - K. Nara
- Graduate School of Frontier Sciences, The University of Tokyo, Kashiwanoha, Kashiwa, Chiba 277-8563, Japan
| | - S.S. Nascimento
- Departamento de Micologia, Universidade Federal de Pernambuco, Recife, Brazil
| | - R.P. Neves
- Departamento de Micologia, Universidade Federal de Pernambuco, Recife, Brazil
| | - I. Olariaga
- Biology, Geology and Inorganic Chemistry department, Universidad Rey Juan Carlos, C/ Tulipán s/n, 28933 Móstoles, Madrid, Spain
| | - R.L. Oliveira
- Programa de Pós-Graduação em Sistemática e Evolução, Centro de Biociências, Universidade Federal do Rio Grande do Norte, Av. Senador Salgado Filho, 3000, 59072-970, Natal, RN, Brazil
| | - T.G.L. Oliveira
- Departamento de Micologia, Universidade Federal de Pernambuco, Recife, Brazil
| | - T. Ono
- Ogasawara Subtropical Branch of Tokyo Metropolitan Agriculture and Forestry Research Center, Komagari, Chichijima, Ogasawara, Tokyo, Japan
| | - M.E. Ordoñez
- Escuela de Ciencias Biológicas, Pontificia Universidad Católica del Ecuador, Av. 12 de octubre 1076 y Roca, Quito, Ecuador
| | - A. de M. Ottoni
- Departamento de Micologia, Universidade Federal de Pernambuco, Recife, Brazil
| | - L.M. Paiva
- Departamento de Micologia, Universidade Federal de Pernambuco, Recife, Brazil
| | - F. Pancorbo
- Pintores de El Paular 25, 28740 Rascafría, Madrid, Spain
| | - B. Pant
- Central Department of Botany, Tribhuvan University, Nepal
| | - J. Pawłowska
- Department of Molecular Phylogenetics and Evolution, Faculty of Biology, Biological and Chemical Research Centre, University of Warsaw, ul. Zwirki i Wigury 101, 02-089 Warsaw, Poland
| | - S.W. Peterson
- Mycotoxin Prevention and Applied Microbiology Research Unit, Agricultural Research Service, U.S. Department of Agriculture, 1815 North University Street, Peoria, IL 61604, USA
| | - D.B. Raudabaugh
- University of Illinois Urbana-Champaign, Illinois Natural History Survey, 1816 South Oak Street, Champaign, Illinois, 61820, USA
| | - E. Rodríguez-Andrade
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili (URV), Sant Llorenç 21, 43201 Reus, Tarragona, Spain
| | - E. Rubio
- C/ José Cueto 3 – 5ºB, 33401 Avilés, Asturias, Spain
| | - K. Rusevska
- Institute of Biology, Faculty of Natural Sciences and Mathematics, Ss. Cyril and Methodius University, Skopje, Republic of Macedonia
| | - A.L.C.M.A. Santiago
- Departamento de Micologia, Universidade Federal de Pernambuco, Recife, Brazil
| | - A.C.S. Santos
- Departamento de Micologia, Universidade Federal de Pernambuco, Recife, Brazil
| | - C. Santos
- Departamento de Ciencias Químicas y Recursos Naturales, BIOREN-UFRO, Universidad de La Frontera, Temuco, Chile
| | - N.A. Sazanova
- Institute of Biological Problems of the North, Far East Branch of the Russian Academy of Sciences, Magadan, Russia
| | - S. Shah
- Central Department of Botany, Tribhuvan University, Nepal
| | - J. Sharma
- Department of Plant and Soil Science, Texas Tech. University, USA
| | - B.D.B. Silva
- Universidade Federal da Bahia, Instituto de Biologia, Departamento de Botânica, 40170115 Ondina, Salvador, BA, Brazil
| | - J.L. Siquier
- Carrer Major, 19, E-07300 Inca (Islas Baleares), Spain
| | - M.S. Sonawane
- National Centre for Microbial Resource (NCMR), National Centre for Cell Science, S.P. Pune University, Ganeshkhind, Pune 411 007, Maharashtra, India
| | - A.M. Stchigel
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili (URV), Sant Llorenç 21, 43201 Reus, Tarragona, Spain
| | - T. Svetasheva
- Biology and Technologies of Living Systems Department, Tula State Lev Tolstoy Pedagogical University, 125 Lenin av., 300026 Tula, Russia
| | - N. Tamakeaw
- Department of Entomology and Plant Pathology, Faculty of Agriculture, Chiang Mai University, Chiang Mai 50200, Thailand
| | - M.T. Telleria
- Departamento de Micología, Real Jardín Botánico, RJB-CSIC, Plaza de Murillo 2, 28014 Madrid, Spain
| | - P.V. Tiago
- Departamento de Micologia, Universidade Federal de Pernambuco, Recife, Brazil
| | - C.M. Tian
- The Key Laboratory for Silviculture and Conservation of Ministry of Education, Beijing Forestry University, Beijing 100083, China
| | - Z. Tkalčec
- Ruđer Bošković Institute, Bijenička cesta 54, HR-10000 Zagreb, Croatia
| | - M.A. Tomashevskaya
- All-Russian Collection of Microorganisms, G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms RAS, Pushchino, Russia
| | - H.H. Truong
- Department of Clinical Plant Science, Faculty of Bioscience, Hosei University, 3-7-2 Kajino-cho, Koganei, Tokyo, Japan
| | - M.V. Vecherskii
- A.N. Severtsov Institute of Ecology and Evolution RAS, Moscow, Russia
| | - C.M. Visagie
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), Faculty of Natural and Agricultural Sciences, University of Pretoria, Private Bag X20, Hatfield 0028, Pretoria, South Africa
- Biosystematics Division, Agricultural Research Council – Plant Health and Protection, P. Bag X134, Queenswood, Pretoria 0121, South Africa
| | - A. Vizzini
- Department of Life Sciences and Systems Biology, University of Turin, Viale P.A. Mattioli 25, 10125, Torino, Italy
| | - N. Yilmaz
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), Faculty of Natural and Agricultural Sciences, University of Pretoria, Private Bag X20, Hatfield 0028, Pretoria, South Africa
| | - I.V. Zmitrovich
- Komarov Botanical Institute of the Russian Academy of Sciences, Saint Petersburg, Russia
| | | | - T. Boekhout
- Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD Utrecht, The Netherlands
- Institute of Biodiversity and Ecosystem Dynamics (IBED), University of Amsterdam, Amsterdam, The Netherlands
| | - T. Kehlet
- Natural History Museum of Denmark, Department of Biology, University of Copenhagen, Universitetsparken 15, 2100 Copenhagen E, Denmark
| | - T. Læssøe
- Natural History Museum of Denmark, Department of Biology, University of Copenhagen, Universitetsparken 15, 2100 Copenhagen E, Denmark
| | - J.Z. Groenewald
- Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD Utrecht, The Netherlands
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Crous P, Schumacher R, Akulov A, Thangavel R, Hernández-Restrepo M, Carnegie A, Cheewangkoon R, Wingfield M, Summerell B, Quaedvlieg W, Coutinho T, Roux J, Wood A, Giraldo A, Groenewald J. New and Interesting Fungi. 2. Fungal Syst Evol 2019; 3:57-134. [PMID: 32467898 PMCID: PMC7235984 DOI: 10.3114/fuse.2019.03.06] [Citation(s) in RCA: 79] [Impact Index Per Article: 15.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022] Open
Abstract
One order, seven families, 28 new genera, 72 new species, 13 new combinations, four epitypes, and interesting new host and / or geographical records are introduced in this study. Pseudorobillardaceae is introduced for Pseudorobillarda (based on P. phragmitis). New genera include: Jeremyomyces (based on J. labinae) on twigs of Salix alba (Germany); Neodothidotthia (based on N. negundinicola) on Acer negundo (Ukraine); Neomedicopsis (based on N. prunicola) on fallen twigs of Prunus padus (Ukraine); Neophaeoappendicospora (based on N. leucaenae) on Leucaena leucocephala (France) (incl. Phaeoappendicosporaceae); Paradevriesia (incl. Paradevriesiaceae) (based on P. americana) from air (USA); Phaeoseptoriella (based on P. zeae) on leaves of Zea mays (South Africa); Piniphoma (based on P. wesendahlina) on wood debris of Pinus sylvestris (Germany); Pseudoconiothyrium (based on P. broussonetiae) on branch of Broussonetia papyrifera (Italy); Sodiomyces (based on S. alkalinus) from soil (Mongolia), and Turquoiseomyces (incl. Turquoiseomycetales and Turquoiseomycetaceae) (based on T. eucalypti) on leaves of Eucalyptus leptophylla (Australia); Typhicola (based on T. typharum) on leaves of Typha sp. (Germany); Xenodevriesia (incl. Xenodevriesiaceae) (based on X. strelitziicola) on leaves of Strelitzia sp. (South Africa). New species include: Bacillicladium clematidis on branch of Clematis vitalbae (Austria); Cercospora gomphrenigena on leaves of Gomphrena globosa (South Africa); Cyphellophora clematidis on Clematis vitalba (Austria); Exophiala abietophila on bark of Abies alba (Norway); Exophiala lignicola on fallen decorticated trunk of Quercus sp. (Ukraine); Fuscostagonospora banksiae on Banksia sp. (Australia); Gaeumannomycella caricicola on dead leaf of Carex remota (Germany); Hansfordia pruni on Prunus persica twig (Italy) (incl. Hansfordiaceae); Microdochium rhopalostylidis on Rhopalostylis sapida (New Zealand); Neocordana malayensis on leaves of Musa sp. (Malaysia); Neocucurbitaria prunicola on fallen twigs of Prunus padus (Ukraine); Neocucurbitaria salicis-albae on Salix alba twig (Ukraine); Neohelicomyces deschampsiae on culm base of dead leaf sheath of Deschampsia cespitosa (Germany); Pararoussoella juglandicola on twig of Juglans regia (Germany); Pezicula eucalyptigena on leaves of Eucalyptus sp. (South Africa); Phlogicylindrium dunnii on leaves of Eucalyptus dunnii (Australia); Phyllosticta hagahagaensis on leaf litter of Carissa bispinosa (South Africa); Phyllosticta austroafricana on leaf spots of unidentified deciduous tree host (South Africa); Pseudosigmoidea alnicola on Alnus glutinosa leaf litter (Germany); Pseudoteratosphaeria africana on leaf spot on unidentified host (Angola); Porodiplodia vitis on canes of Vitis vinifera (USA); Sodiomyces alkalinus from soil (Mongolia), Sodiomyces magadiensis and Sodiomyces tronii from soil (Kenya), Sympodiella quercina on fallen leaf of Quercus robur (Germany) and Zasmidium hakeicola on leaves of Hakea corymbosa (Australia). Epitypes are designated for: Cryptostictis falcata on leaves of E. alligatrix (Australia), Hendersonia phormii on leaves of Phormium tenax (New Zealand), Sympodiella acicola on needles of Pinus sylvestris (Netherlands), and Sphaeria scirpicola var. typharum on leaf of Typha sp. (Germany). Several taxa originally described from rocks are validated in this study. New taxa include: Extremaceae fam. nov., and new genera, Arthrocatena, Catenulomyces, Constantinomyces, Extremus, Hyphoconis, Incertomyces, Lapidomyces, Lithophila, Monticola, Meristemomyces, Oleoguttula, Perusta, Petrophila, Ramimonilia, Saxophila and Vermiconidia. New species include: Arthrocatena tenebrosa, Catenulomyces convolutus, Constantinomyces virgultus, C. macerans, C. minimus, C. nebulosus, C. virgultus, Exophiala bonariae, Extremus adstrictus, E. antarcticus, Hyphoconis sterilis, Incertomyces perditus, Knufia karalitana, K. marmoricola, K. mediterranea, Lapidomyces hispanicus, Lithophila guttulata, Monticola elongata, Meristemomyces frigidus, M. arctostaphyli, Neodevriesia bulbillosa, N. modesta, N. sardiniae, N. simplex, Oleoguttula mirabilis, Paradevriesia compacta, Perusta inaequalis, Petrophila incerta, Rachicladosporium alpinum, R. inconspicuum, R. mcmurdoi, R. monterosanum, R. paucitum, Ramimonilia apicalis, Saxophila tyrrhenica, Vermiconidia antarctica, V. calcicola, V. foris, and V. flagrans.
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Affiliation(s)
- P.W. Crous
- Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD Utrecht, The Netherlands
- Department of Genetics, Biochemistry and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0002, South Africa
- Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands
| | | | - A. Akulov
- Department of Mycology and Plant Resistance, V. N. Karazin Kharkiv National University, Maidan Svobody 4, 61022 Kharkiv, Ukraine
| | - R. Thangavel
- Plant Health and Environment Laboratory, Ministry for Primary Industries, P.O. Box 2095, Auckland 1140, New Zealand
| | - M. Hernández-Restrepo
- Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD Utrecht, The Netherlands
| | - A.J. Carnegie
- Forest Health & Biosecurity, NSW Department of Primary Industries - Forestry, Level 12, 10 Valentine Ave, Parramatta NSW 2150, NSW 2124, Australia
| | - R. Cheewangkoon
- Department of Plant Pathology, Faculty of Agriculture, Chiang Mai University, Chiang Mai 50200, Thailand
| | - M.J. Wingfield
- Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0002, South Africa
| | - B.A. Summerell
- Royal Botanic Gardens and Domain Trust, Mrs Macquaries Rd, Sydney, NSW 2000, Australia
| | - W. Quaedvlieg
- Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD Utrecht, The Netherlands
| | - T.A. Coutinho
- Department of Genetics, Biochemistry and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0002, South Africa
| | - J. Roux
- Department of Plant and Soil Sciences, Faculty of Natural and Agricultural Sciences, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0002, South Africa
| | - A.R. Wood
- ARC – Plant Protection Research Institute, P. Bag X5017, Stellenbosch 7599, South Africa
| | - A. Giraldo
- Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD Utrecht, The Netherlands
- Faculty of Natural and Agricultural Sciences, Department of Plant Sciences, University of the Free State, P.O. Box 339, Bloemfontein 9300, South Africa
| | - J.Z. Groenewald
- Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD Utrecht, The Netherlands
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Johnston P, Park D. Blastacervulus metrosideri sp. nov. leaf spot on Metrosideros excelsa in New Zealand. Fungal Syst Evol 2019; 3:165-169. [PMID: 32467901 PMCID: PMC7235978 DOI: 10.3114/fuse.2019.03.09] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Abstract
A leaf-spotting fungal pathogen common on Metrosideros excelsa in New Zealand is described here as Blastacervulus metrosideri sp. nov. It has previously been identified in the New Zealand literature as Leptomelanconium sp. and as Staninwardia breviuscula. The choice of genus for this new species is supported by a phylogeny based on ITS and LSU sequences. It is phylogenetically close to several morphologically similar Eucalyptus leaf spotting pathogens.
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Affiliation(s)
- P.R. Johnston
- Manaaki Whenua Landcare Research, Private Bag 92170, Auckland 1142, New Zealand
| | - D. Park
- Manaaki Whenua Landcare Research, Private Bag 92170, Auckland 1142, New Zealand
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108
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Phookamsak R, Hyde KD, Jeewon R, Bhat DJ, Jones EBG, Maharachchikumbura SSN, Raspé O, Karunarathna SC, Wanasinghe DN, Hongsanan S, Doilom M, Tennakoon DS, Machado AR, Firmino AL, Ghosh A, Karunarathna A, Mešić A, Dutta AK, Thongbai B, Devadatha B, Norphanphoun C, Senwanna C, Wei D, Pem D, Ackah FK, Wang GN, Jiang HB, Madrid H, Lee HB, Goonasekara ID, Manawasinghe IS, Kušan I, Cano J, Gené J, Li J, Das K, Acharya K, Raj KNA, Latha KPD, Chethana KWT, He MQ, Dueñas M, Jadan M, Martín MP, Samarakoon MC, Dayarathne MC, Raza M, Park MS, Telleria MT, Chaiwan N, Matočec N, de Silva NI, Pereira OL, Singh PN, Manimohan P, Uniyal P, Shang QJ, Bhatt RP, Perera RH, Alvarenga RLM, Nogal-Prata S, Singh SK, Vadthanarat S, Oh SY, Huang SK, Rana S, Konta S, Paloi S, Jayasiri SC, Jeon SJ, Mehmood T, Gibertoni TB, Nguyen TTT, Singh U, Thiyagaraja V, Sarma VV, Dong W, Yu XD, Lu YZ, Lim YW, Chen Y, Tkalčec Z, Zhang ZF, Luo ZL, Daranagama DA, Thambugala KM, Tibpromma S, Camporesi E, Bulgakov TS, Dissanayake AJ, Senanayake IC, Dai DQ, Tang LZ, Khan S, Zhang H, Promputtha I, Cai L, Chomnunti P, Zhao RL, Lumyong S, Boonmee S, Wen TC, Mortimer PE, Xu J. Fungal diversity notes 929–1035: taxonomic and phylogenetic contributions on genera and species of fungi. FUNGAL DIVERS 2019. [DOI: 10.1007/s13225-019-00421-w] [Citation(s) in RCA: 62] [Impact Index Per Article: 12.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
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109
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A time travel story: metagenomic analyses decipher the unknown geographical shift and the storage history of possibly smuggled antique marble statues. ANN MICROBIOL 2019. [DOI: 10.1007/s13213-019-1446-3] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023] Open
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110
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Trovão J, Tiago I, Soares F, Paiva DS, Mesquita N, Coelho C, Catarino L, Gil F, Portugal A. Description of Aeminiaceae fam. nov., Aeminium gen. nov. and Aeminiumludgeri sp. nov. (Capnodiales), isolated from a biodeteriorated art-piece in the Old Cathedral of Coimbra, Portugal. MycoKeys 2019:57-73. [PMID: 30728746 PMCID: PMC6361875 DOI: 10.3897/mycokeys.45.31799] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2018] [Accepted: 01/06/2019] [Indexed: 11/12/2022] Open
Abstract
When colonizing stone monuments, microcolonial black fungi are considered one of the most severe and resistant groups of biodeteriorating organisms, posing a very difficult challenge to conservators and biologists working with cultural heritage preservation. During an experimental survey aimed to isolate fungi from a biodeteriorated limestone art piece in the Old Cathedral of Coimbra, Portugal (a UNESCO World Heritage Site), an unknown microcolonial black fungus was retrieved. The isolated fungus was studied through a complete examination based on multilocus phylogeny of a combined dataset of ITS rDNA, LSU and rpb2, in conjunction with morphological, physiological, and ecological characteristics. This integrative analysis allows for the description of a new family, Aeminiaceae fam. nov., a new genus Aeminium gen. nov., and a new species, Aeminiumludgeri sp. nov., in the order Capnodiales.
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Affiliation(s)
- João Trovão
- Centre for Functional Ecology, Science for People and the Planet, University of Coimbra, Coimbra, Portugal University of Coimbra Coimbra Portugal
| | - Igor Tiago
- Centre for Functional Ecology, Science for People and the Planet, University of Coimbra, Coimbra, Portugal University of Coimbra Coimbra Portugal
| | - Fabiana Soares
- Centre for Functional Ecology, Science for People and the Planet, University of Coimbra, Coimbra, Portugal University of Coimbra Coimbra Portugal
| | - Diana Sofia Paiva
- Laboratory for Plant Health (Fitolab), Instituto Pedro Nunes, Coimbra, Portugal Instituto Pedro Nunes Coimbra Portugal
| | - Nuno Mesquita
- Centre for Functional Ecology, Science for People and the Planet, University of Coimbra, Coimbra, Portugal University of Coimbra Coimbra Portugal
| | - Catarina Coelho
- Centre for Functional Ecology, Science for People and the Planet, University of Coimbra, Coimbra, Portugal University of Coimbra Coimbra Portugal
| | - Lídia Catarino
- Geosciences Center, University of Coimbra, Coimbra, Portugal University of Coimbra Coimbra Portugal
| | - Francisco Gil
- Center for Physics of the University of Coimbra (CfisUC), Coimbra, Portugal Instituto Pedro Nunes Coimbra Portugal
| | - António Portugal
- Centre for Functional Ecology, Science for People and the Planet, University of Coimbra, Coimbra, Portugal University of Coimbra Coimbra Portugal
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111
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Hassan O, Chang T. Phylogenetic and Morphological Reassessment of Mycosphaerella nawae, the Causal Agent of Circular Leaf Spot in Persimmon. PLANT DISEASE 2019; 103:200-213. [PMID: 30517058 DOI: 10.1094/pdis-05-18-0857-re] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Persimmon (Diospyros kaki) fruit production is severely affected by circular leaf spot worldwide. Mycosphaerella nawae causes circular leaf spot of persimmon (CLSP) and can result in leaf spot, defoliation, early fruit maturation, and subsequent softening and abscission. The morphology and phylogenetic position of M. nawae within the family Mycosphaerellaceae is, therefore, of utmost importance given its impact on persimmon production. Based on previous morphological and molecular studies, the phylogenetic position of the anamorphic genera associated with M. nawae remain in confusion. In the present study, 15 isolates of M. nawae were collected from the tissue of living leaves exhibiting leaf spot symptoms. A subsample of three isolates was characterized phylogenetically and morphologically. Isolates were compared based on DNA sequence data for the internal transcribed spacer region (ITS1-5.8S ITS2), part of the 28S nrDNA including domains D1-D3 (LSU), actin (Act), translation elongation factor 1-alpha (EF-1α), and RNA polymerase II second largest subunit (rpb2). The anamorph and teleomorph structures, ascospore germination patterns, as well as host specificity were used to describe the isolates. The phylogenetic and morphological analyses revealed that M. nawae requires a new holomorphic genus within Mycosphaerellaceae, described herein as Plurivorosphaerella gen. nov. A host specificity test revealed that Plurivorosphaerella nawae comb. nov. (M. nawae) can superficially colonize, but not infect, apple, peach, cherry, and plum.
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Affiliation(s)
- Oliul Hassan
- Department of Ecology & Environmental System, College of Ecology & Environmental Sciences, Kyungpook National University, Sangju-si, Gyeongsangbuk-do, 37224, Korea (Republic of)
| | - Taehyun Chang
- Department of Ecology & Environmental System, College of Ecology & Environmental Sciences, Kyungpook National University, Sangju-si, Gyeongsangbuk-do, 37224, Korea (Republic of)
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112
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Prenafeta-Boldú FX, Roca N, Villatoro C, Vera L, de Hoog GS. Prospective application of melanized fungi for the biofiltration of indoor air in closed bioregenerative systems. JOURNAL OF HAZARDOUS MATERIALS 2019; 361:1-9. [PMID: 30176406 DOI: 10.1016/j.jhazmat.2018.08.059] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2018] [Revised: 07/25/2018] [Accepted: 08/17/2018] [Indexed: 06/08/2023]
Abstract
Cultures of melanized fungi representative of the black yeast orders Capnodiales (Cladosporium cladosporioides and Neohortaea acidophila) and Chaetothyriales (Cladophialophora psammophila) were confined with indoor air from the laboratory during 48 h. Volatile organic compounds (VOCs) from the headspace were analyzed by thermal desorption gas chromatography time-of-fly mass spectrometry (TD-GC-ToFMS, detection threshold 0.1 μg m-3) and compared against an abiotic control. A mixture of 71 VOCs were identified and quantified in the indoor air (total concentration 1.4 mg m-3). Most of these compounds were removed in the presence of fungal biomass, but 40 newly formed putative volatile metabolites were detected, though at comparatively low total concentrations (<50 μg m-3). The VOCs emission profile of C. cladosporioides, a ubiquitous and well-known species often associated to the sick building syndrome, was consistent with previous literature reports. The specialized C. psammophila and N. acidophila, isolated respectively from gasoline polluted soil and from lignite, displayed rather specific VOCs emission profiles. Mass balances on the fungal uptake and generation of VOCs resulted in overall VOCs removal efficiencies higher than 96% with all tested fungi. Applied aspects and biosafety issues concerning the suitability of black yeasts for the biofiltration of indoor air have been discussed.
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Affiliation(s)
- Francesc X Prenafeta-Boldú
- GIRO, Institute of Agrifood Research and Technology (IRTA), Torre Marimon, E08140 Caldes de Montbui, Catalonia, Spain.
| | - Núria Roca
- GIRO, Institute of Agrifood Research and Technology (IRTA), Torre Marimon, E08140 Caldes de Montbui, Catalonia, Spain
| | - Carmen Villatoro
- Centre of Competence of Molecular Odour Evaluation, Odournet S.L., Av. Corts Catalanes 5, 08173 Sant Cugat del Vallès, Barcelona, Catalonia, Spain
| | - Luciano Vera
- Centre of Competence of Molecular Odour Evaluation, Odournet S.L., Av. Corts Catalanes 5, 08173 Sant Cugat del Vallès, Barcelona, Catalonia, Spain
| | - G Sybren de Hoog
- Westerdijk Fungal Biodiversity Institute, 3584 CT, Utrecht, The Netherlands; Institute of Biodiversity and Ecosystem Dynamics, University of Amsterdam, 1098 XH, Amsterdam, The Netherlands
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113
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Cao X, Xu X, Che H, West JS, Luo D. Three Colletotrichum Species, Including a New Species, are Associated to Leaf Anthracnose of Rubber Tree in Hainan, China. PLANT DISEASE 2019; 103:117-124. [PMID: 30398958 DOI: 10.1094/pdis-02-18-0374-re] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Colletotrichum gloeosporioides and C. acutatum have been reported to be causal agents of anthracnose disease of rubber tree. Recent investigations have shown that both C. gloeosporioides and C. acutatum are species complexes. The identities of Colletotrichum species causing anthracnose disease of rubber tree in Hainan, China, are unknown. In this study, 106 isolates obtained from rubber tree with symptoms of anthracnose were collected from 12 counties of Hainan and identified at the species complex level based on the ITS sequences and colony morphologies. Seventy-four isolates were identified as C. gloeosporioides species complex and the other 32 isolates as C. acutatum species complex. Forty-two isolates were selected for further multilocus phylogenetic analyses in order to identify the isolates to the species level. Twenty-six isolates from the C. gloeosporioides species complex were characterized for partial sequences of seven gene regions (ACT, TUB2, CHS-1, GAPDH, ITS, ApMat, and GS), and the other 16 isolates from the C. acutatum species complex for five gene regions (ACT, TUB2, CHS-1, GAPDH, and ITS). Three species were identified: C. siamense and C. fructicola from the C. gloeosporioides species complex, and a new species C. wanningense from the C. acutatum species complex. Artificial inoculation of rubber tree leaves confirmed the pathogenicity of the three species. The present study improves the understanding of species causing anthracnose on rubber tree and provides useful information for the effective control of the disease.
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Affiliation(s)
- Xueren Cao
- Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture, Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China
| | - Xiangming Xu
- NIAB EMR, New Road, East Malling, Kent ME19 6BJ, UK
| | - Haiyan Che
- Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture, Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China
| | | | - Daquan Luo
- Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture, Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China
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114
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Aylward J, Roets F, Dreyer LL, Wingfield MJ. Teratosphaeria stem canker of Eucalyptus: two pathogens, one devastating disease. MOLECULAR PLANT PATHOLOGY 2019; 20:8-19. [PMID: 30311749 PMCID: PMC6430483 DOI: 10.1111/mpp.12758] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
BACKGROUND Teratosphaeria gauchensis and T. zuluensis are closely related fungi that cause Teratosphaeria (previously Coniothyrium) stem canker disease on Eucalyptus species propagated in plantations for commercial purposes. This disease is present in many countries in which Eucalyptus trees are planted, and continues to spread with the international trade of infected plant germplasm. TAXONOMY Fungi, Ascomycota, Pezizomycotina, Dothideomycetes, Dothideomycetidae, Capnodiales, Teratosphaeriaceae, Teratosphaeria. IDENTIFICATION The causal agents form dark masses of pycnidia that are visible on the surface of distinct stem cankers that typically form on young green stem tissues. Accurate diagnosis of the causal agents requires DNA sequence data. HOST RANGE Nine species of Eucalyptus are known to be affected. Of these, E. grandis and its hybrids, which include some of the most important planting stock globally, appear to be particularly vulnerable. DISEASE SYMPTOMS Small necrotic lesions develop on young green stem tissue. These lesions coalesce to form large cankers that exude gum. Epicormic shoots develop below the girdling canker and, in severe cases, trees die. USEFUL WEBSITES Mycobank, https://www.mycobank.org; Publications of the Forestry and Agricultural Biotechnology Institute (FABI), https://www.fabinet.up.ac.za/index.php/journals.
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Affiliation(s)
- Janneke Aylward
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI)University of PretoriaPretoria0002South Africa
- Department of Conservation Ecology and EntomologyStellenbosch University, Private Bag X1Matieland7602South Africa
| | - Francois Roets
- Department of Conservation Ecology and EntomologyStellenbosch University, Private Bag X1Matieland7602South Africa
| | - Leánne L. Dreyer
- Department of Botany and ZoologyStellenbosch University, Private Bag X1Matieland7602South Africa
| | - Michael J. Wingfield
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI)University of PretoriaPretoria0002South Africa
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115
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Lombard L, Sandoval-Denis M, Lamprecht S, Crous P. Epitypification of Fusarium oxysporum - clearing the taxonomic chaos. PERSOONIA 2018; 43:1-47. [PMID: 32214496 PMCID: PMC7085860 DOI: 10.3767/persoonia.2019.43.01] [Citation(s) in RCA: 83] [Impact Index Per Article: 13.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/20/2018] [Accepted: 10/19/2018] [Indexed: 01/06/2023]
Abstract
Fusarium oxysporum is the most economically important and commonly encountered species of Fusarium. This soil-borne fungus is known to harbour both pathogenic (plant, animal and human) and non-pathogenic strains. However, in its current concept F. oxysporum is a species complex consisting of numerous cryptic species. Identification and naming these cryptic species is complicated by multiple subspecific classification systems and the lack of living ex-type material to serve as basic reference point for phylogenetic inference. Therefore, to advance and stabilise the taxonomic position of F. oxysporum as a species and allow naming of the multiple cryptic species recognised in this species complex, an epitype is designated for F. oxysporum. Using multi-locus phylogenetic inference and subtle morphological differences with the newly established epitype of F. oxysporum as reference point, 15 cryptic taxa are resolved in this study and described as species.
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Affiliation(s)
- L. Lombard
- Westerdijk Fungal Biodiversity Institute, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands
| | - M. Sandoval-Denis
- Westerdijk Fungal Biodiversity Institute, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands
- Faculty of Natural and Agricultural Sciences, Department of Plant Sciences, University of the Free State, P.O. Box 339, Bloemfontein 9300, South Africa
| | - S.C. Lamprecht
- ARC-Plant Health and Protection, Private Bag X5017, Stellenbosch, 7599, Western Cape, South Africa
| | - P.W. Crous
- Westerdijk Fungal Biodiversity Institute, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands
- Faculty of Natural and Agricultural Sciences, Department of Plant Sciences, University of the Free State, P.O. Box 339, Bloemfontein 9300, South Africa
- Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands
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116
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Crous P, Wingfield M, Burgess T, Hardy G, Gené J, Guarro J, Baseia I, García D, Gusmão L, Souza-Motta C, Thangavel R, Adamčík S, Barili A, Barnes C, Bezerra J, Bordallo J, Cano-Lira J, de Oliveira R, Ercole E, Hubka V, Iturrieta-González I, Kubátová A, Martín M, Moreau PA, Morte A, Ordoñez M, Rodríguez A, Stchigel A, Vizzini A, Abdollahzadeh J, Abreu V, Adamčíková K, Albuquerque G, Alexandrova A, Álvarez Duarte E, Armstrong-Cho C, Banniza S, Barbosa R, Bellanger JM, Bezerra J, Cabral T, Caboň M, Caicedo E, Cantillo T, Carnegie A, Carmo L, Castañeda-Ruiz R, Clement C, Čmoková A, Conceição L, Cruz R, Damm U, da Silva B, da Silva G, da Silva R, de A. Santiago A, de Oliveira L, de Souza C, Déniel F, Dima B, Dong G, Edwards J, Félix C, Fournier J, Gibertoni T, Hosaka K, Iturriaga T, Jadan M, Jany JL, Jurjević Ž, Kolařík M, Kušan I, Landell M, Leite Cordeiro T, Lima D, Loizides M, Luo S, Machado A, Madrid H, Magalhães O, Marinho P, Matočec N, Mešić A, Miller A, Morozova O, Neves R, Nonaka K, Nováková A, Oberlies N, Oliveira-Filho J, Oliveira T, Papp V, Pereira O, Perrone G, Peterson S, Pham T, Raja H, Raudabaugh D, Řehulka J, Rodríguez-Andrade E, Saba M, Schauflerová A, Shivas R, Simonini G, Siqueira J, Sousa J, Stajsic V, Svetasheva T, Tan Y, Tkalčec Z, Ullah S, Valente P, Valenzuela-Lopez N, Abrinbana M, Viana Marques D, Wong P, Xavier de Lima V, Groenewald J. Fungal Planet description sheets: 716-784. PERSOONIA 2018; 40:240-393. [PMID: 30505003 PMCID: PMC6146637 DOI: 10.3767/persoonia.2018.40.10] [Citation(s) in RCA: 85] [Impact Index Per Article: 14.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/01/2018] [Accepted: 05/10/2018] [Indexed: 11/25/2022]
Abstract
Novel species of fungi described in this study include those from various countries as follows: Australia, Chaetopsina eucalypti on Eucalyptus leaf litter, Colletotrichum cobbittiense from Cordyline stricta × C. australis hybrid, Cyanodermella banksiae on Banksia ericifolia subsp. macrantha, Discosia macrozamiae on Macrozamia miquelii, Elsinoë banksiigena on Banksia marginata, Elsinoë elaeocarpi on Elaeocarpus sp., Elsinoë leucopogonis on Leucopogon sp., Helminthosporium livistonae on Livistona australis, Idriellomyces eucalypti (incl. Idriellomyces gen. nov.) on Eucalyptus obliqua, Lareunionomyces eucalypti on Eucalyptus sp., Myrotheciomyces corymbiae (incl. Myrotheciomyces gen. nov., Myrotheciomycetaceae fam. nov.), Neolauriomyces eucalypti (incl. Neolauriomyces gen. nov., Neolauriomycetaceae fam. nov.) on Eucalyptus sp., Nullicamyces eucalypti (incl. Nullicamyces gen. nov.) on Eucalyptus leaf litter, Oidiodendron eucalypti on Eucalyptus maidenii, Paracladophialophora cyperacearum (incl. Paracladophialophoraceae fam. nov.) and Periconia cyperacearum on leaves of Cyperaceae, Porodiplodia livistonae (incl. Porodiplodia gen. nov., Porodiplodiaceae fam. nov.) on Livistona australis, Sporidesmium melaleucae (incl. Sporidesmiales ord. nov.) on Melaleuca sp., Teratosphaeria sieberi on Eucalyptus sieberi, Thecaphora australiensis in capsules of a variant of Oxalis exilis. Brazil, Aspergillus serratalhadensis from soil, Diaporthe pseudoinconspicua from Poincianella pyramidalis, Fomitiporella pertenuis on dead wood, Geastrum magnosporum on soil, Marquesius aquaticus (incl. Marquesius gen. nov.) from submerged decaying twig and leaves of unidentified plant, Mastigosporella pigmentata from leaves of Qualea parviflorae, Mucor souzae from soil, Mycocalia aquaphila on decaying wood from tidal detritus, Preussia citrullina as endophyte from leaves of Citrullus lanatus, Queiroziella brasiliensis (incl. Queiroziella gen. nov.) as epiphytic yeast on leaves of Portea leptantha, Quixadomyces cearensis (incl. Quixadomyces gen. nov.) on decaying bark, Xylophallus clavatus on rotten wood. Canada, Didymella cari on Carum carvi and Coriandrum sativum. Chile, Araucasphaeria foliorum (incl. Araucasphaeria gen. nov.) on Araucaria araucana, Aspergillus tumidus from soil, Lomentospora valparaisensis from soil. Colombia, Corynespora pseudocassiicola on Byrsonima sp., Eucalyptostroma eucalyptorum on Eucalyptus pellita, Neometulocladosporiella eucalypti (incl. Neometulocladosporiella gen. nov.) on Eucalyptus grandis × urophylla, Tracylla eucalypti (incl. Tracyllaceae fam. nov., Tracyllalales ord. nov.) on Eucalyptus urophylla. Cyprus, Gyromitra anthracobia (incl. Gyromitra subg. Pseudoverpa) on burned soil. Czech Republic, Lecanicillium restrictum from the surface of the wooden barrel, Lecanicillium testudineum from scales of Trachemys scripta elegans. Ecuador, Entoloma yanacolor and Saproamanita quitensis on soil. France, Lentithecium carbonneanum from submerged decorticated Populus branch. Hungary, Pleuromyces hungaricus (incl. Pleuromyces gen. nov.) from a large Fagus sylvatica log. Iran, Zymoseptoria crescenta on Aegilops triuncialis. Malaysia, Ochroconis musicola on Musa sp. Mexico, Cladosporium michoacanense from soil. New Zealand , Acrodontium metrosideri on Metrosideros excelsa, Polynema podocarpi on Podocarpus totara, Pseudoarthrographis phlogis (incl. Pseudoarthrographis gen. nov.) on Phlox subulata. Nigeria, Coprinopsis afrocinerea on soil. Pakistan, Russula mansehraensis on soil under Pinus roxburghii. Russia, Baorangia alexandri on soil in deciduous forests with Quercus mongolica. South Africa, Didymocyrtis brachylaenae on Brachylaena discolor. Spain, Alfaria dactylis from fruit of Phoenix dactylifera, Dothiora infuscans from a blackened wall, Exophiala nidicola from the nest of an unidentified bird, Matsushimaea monilioides from soil, Terfezia morenoi on soil. United Arab Emirates, Tirmania honrubiae on soil. USA, Arxotrichum wyomingense (incl. Arxotrichum gen. nov.) from soil, Hongkongmyces snookiorum from submerged detritus from a fresh water fen, Leratiomyces tesquorum from soil, Talaromyces tabacinus on leaves of Nicotiana tabacum. Vietnam, Afroboletus vietnamensis on soil in an evergreen tropical forest, Colletotrichum condaoense from Ipomoea pes-caprae. Morphological and culture characteristics along with DNA barcodes are provided.
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Affiliation(s)
- P.W. Crous
- Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD Utrecht, The Netherlands
- Department of Genetics, Biochemistry and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, P. Bag X20, Pretoria 0028, South Africa
| | - M.J. Wingfield
- Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria 0002, South Africa
| | - T.I. Burgess
- Centre for Phytophthora Science and Management, Murdoch University, 90 South Street, Murdoch, WA 6150, Australia
| | - G.E.St.J. Hardy
- Centre for Phytophthora Science and Management, Murdoch University, 90 South Street, Murdoch, WA 6150, Australia
| | - J. Gené
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili, Sant Llorenç 21, 43201 Reus, Spain
| | - J. Guarro
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili, Sant Llorenç 21, 43201 Reus, Spain
| | - I.G. Baseia
- Departamento de Botânica e Zoologia, Universidade Federal do Rio Grande do Norte, Natal, Rio Grande do Norte, Brazil
| | - D. García
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili, Sant Llorenç 21, 43201 Reus, Spain
| | - L.F.P. Gusmão
- Departamento de Ciências Biológicas, Universidade Estadual de Feira de Santana, Av. Transnordestina s/n, NovoHorizonte, 44036-900, Feira de Santana, BA, Brazil
| | - C.M. Souza-Motta
- URM Culture Collection, Universidade Federal de Pernambuco, Recife, Brazil
- Departamento de Micologia Prof. Chaves Batista, Universidade Federal de Pernambuco, Recife, Brazil
| | - R. Thangavel
- Plant Health and Environment Laboratory, Ministry for Primary Industries, P.O. Box 2095, Auckland 1140, New Zealand
| | - S. Adamčík
- Department of Plant Pathology and Mycology, Institute of Forest Ecology Slovak Academy of Sciences Zvolen, Akademická 2, SK-949 01 Nitra, Slovakia
| | - A. Barili
- Escuela de Ciencias Biológicas, Pontificia Universidad Católica del Ecuador, Av. 12 de octubre 1076 y Roca, Quito, Ecuador
| | - C.W. Barnes
- Instituto Nacional de Investigaciones Agropecuarias, Estación Experimental Santa Catalina, Panamericana Sur Km 1, Sector Cutuglahua, Pichincha, Ecuador
| | - J.D.P. Bezerra
- Departamento de Micologia Prof. Chaves Batista, Universidade Federal de Pernambuco, Recife, Brazil
| | - J.J. Bordallo
- Departamento de Biología Vegetal (Botánica), Facultad de Biología, Universidad de Murcia, 30100 Murcia, Spain
| | - J.F. Cano-Lira
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili, Sant Llorenç 21, 43201 Reus, Spain
| | - R.J.V. de Oliveira
- Departamento de Micologia Prof. Chaves Batista, Universidade Federal de Pernambuco, Recife, Brazil
| | - E. Ercole
- Department of Life Sciences and Systems Biology, University of Torino, Viale P.A. Mattioli 25, I-10125 Torino, Italy
| | - V. Hubka
- Department of Botany, Faculty of Science, Charles University, Benátská 2, 128 01 Prague 2, Czech Republic
- Laboratory of Fungal Genetics and Metabolism, Institute of Microbiology of the CAS, v.v.i, Vídeňská 1083, 142 20 Prague 4, Czech Republic
| | - I. Iturrieta-González
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili, Sant Llorenç 21, 43201 Reus, Spain
| | - A. Kubátová
- Department of Botany, Faculty of Science, Charles University, Benátská 2, 128 01 Prague 2, Czech Republic
| | - M.P. Martín
- Departamento de Micología, Real Jardín Botánico-CSIC, Plaza de Murillo 2, 28014 Madrid, Spain
| | - P.-A. Moreau
- Université de Lille, Faculté de pharmacie de Lille, EA 4483, F-59000 Lille, France
| | - A. Morte
- Departamento de Biología Vegetal (Botánica), Facultad de Biología, Universidad de Murcia, 30100 Murcia, Spain
| | - M.E. Ordoñez
- Escuela de Ciencias Biológicas, Pontificia Universidad Católica del Ecuador, Av. 12 de octubre 1076 y Roca, Quito, Ecuador
| | - A. Rodríguez
- Departamento de Biología Vegetal (Botánica), Facultad de Biología, Universidad de Murcia, 30100 Murcia, Spain
| | - A.M. Stchigel
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili, Sant Llorenç 21, 43201 Reus, Spain
| | - A. Vizzini
- Department of Life Sciences and Systems Biology, University of Torino, Viale P.A. Mattioli 25, I-10125 Torino, Italy
| | - J. Abdollahzadeh
- Department of Plant Protection, Faculty of Agriculture, University of Kurdistan, P.O. Box 416, Sanandaj, Iran
| | - V.P. Abreu
- Departamento de Microbiologia, Universidade Federal de Viçosa, 36570-900, Viçosa, Minas Gerais, Brazil
| | - K. Adamčíková
- Branch for Woody Plants Biology, Institute of Forest Ecology, Slovak Academy of Sciences Zvolen, Akademická 2, SK-949 01 Nitra, Slovakia
| | - G.M.R. Albuquerque
- URM Culture Collection, Universidade Federal de Pernambuco, Recife, Brazil
| | - A.V. Alexandrova
- Lomonosov Moscow State University (MSU), Faculty of Biology, 119234, 1, 12 Leninskie Gory Str., Moscow, Russia
- Joint Russian-Vietnamese Tropical Research and Technological Center, Hanoi, Vietnam
| | - E. Álvarez Duarte
- Mycology Unit, Biomedical Sciences Institute, University of Chile, Santiago, Chile
| | - C. Armstrong-Cho
- Crop Development Centre / Dept. of Plant Sciences, University of Saskatchewan, 51 Campus Drive, Saskatoon S7N 5A8, Canada
| | - S. Banniza
- Crop Development Centre / Dept. of Plant Sciences, University of Saskatchewan, 51 Campus Drive, Saskatoon S7N 5A8, Canada
| | - R.N. Barbosa
- URM Culture Collection, Universidade Federal de Pernambuco, Recife, Brazil
| | - J.-M. Bellanger
- CEFE UMR5175, CNRS – Université de Montpellier – Université Paul-Valéry Montpellier – EPHE – INSERM, 1919, route de Mende, F-34293 Montpellier Cedex 5, France
| | - J.L. Bezerra
- Departamento de Micologia Prof. Chaves Batista, Universidade Federal de Pernambuco, Recife, Brazil
| | - T.S. Cabral
- Universidade Federal do Rio Grande do Norte, Natal, Rio Grande do Norte, Brazil
| | - M. Caboň
- Department of Plant Pathology and Mycology, Institute of Forest Ecology Slovak Academy of Sciences Zvolen, Akademická 2, SK-949 01 Nitra, Slovakia
| | - E. Caicedo
- Escuela de Ciencias Biológicas, Pontificia Universidad Católica del Ecuador, Av. 12 de octubre 1076 y Roca, Quito, Ecuador
| | - T. Cantillo
- Departamento de Ciências Biológicas, Universidade Estadual de Feira de Santana, Av. Transnordestina s/n, NovoHorizonte, 44036-900, Feira de Santana, BA, Brazil
| | - A.J. Carnegie
- Forest Health & Biosecurity, NSW Department of Primary Industries, Level 12, 10 Valentine Ave, Parramatta NSW 2150, Locked Bag 5123, Parramatta NSW 2124, Australia
| | - L.T. Carmo
- Departamento de Ciências Biológicas, Universidade Estadual de Feira de Santana, Av. Transnordestina s/n, NovoHorizonte, 44036-900, Feira de Santana, BA, Brazil
| | - R.F. Castañeda-Ruiz
- Inst. de Investigaciones Fundamentales en Agricultura Tropical ‘Alejandro de Humboldt’, Calle 1 Esq. 2, C.P. 17200, Santiago de Las Vegas, C. Habana, Cuba
| | - C.R. Clement
- Instituto Nacional de Pesquisas da Amazônia, Manaus, Amazonas, Brazil
| | - A. Čmoková
- Laboratory of Fungal Genetics and Metabolism, Institute of Microbiology of the CAS, v.v.i, Vídeňská 1083, 142 20 Prague 4, Czech Republic
| | - L.B. Conceição
- Departamento de Ciências Biológicas, Universidade Estadual de Feira de Santana, Av. Transnordestina s/n, NovoHorizonte, 44036-900, Feira de Santana, BA, Brazil
| | - R.H.S.F. Cruz
- Departamento de Botânica e Zoologia, Universidade Federal do Rio Grande do Norte, Natal, Rio Grande do Norte, Brazil
| | - U. Damm
- Senckenberg Museum of Natural History Görlitz, PF 300 154, 02806 Görlitz, Germany
| | | | - G.A. da Silva
- Departamento de Micologia Prof. Chaves Batista, Universidade Federal de Pernambuco, Recife, Brazil
| | - R.M.F. da Silva
- Departamento de Micologia Prof. Chaves Batista, Universidade Federal de Pernambuco, Recife, Brazil
| | - A.L.C.M. de A. Santiago
- Departamento de Micologia Prof. Chaves Batista, Universidade Federal de Pernambuco, Recife, Brazil
| | - L.F. de Oliveira
- Universidade de Pernambuco- Campus Serra Talhada, Serra Talhada, Brazil
| | - C.A.F. de Souza
- Departamento de Micologia Prof. Chaves Batista, Universidade Federal de Pernambuco, Recife, Brazil
| | - F. Déniel
- Université de Brest, EA3882 Laboratoire Universitaire de Biodiversité et Ecologie Microbienne, IBSAM, ESIAB, Technopôle Brest-Iroise, 29280, Plouzané, France
| | - B. Dima
- Eötvös Loránd University, Department of Plant Anatomy, Budapest, Hungary
| | - G. Dong
- University of Sydney, Plant Breeding Institute, 107 Cobbitty Rd, Cobbitty 2570, New South Wales, Australia
| | - J. Edwards
- Agriculture Victoria, School of Applied Systems Biology, La Trobe University, Bundoora 3083, Victoria, Australia
| | - C.R. Félix
- Instituto de Ciências Biológicas e da Saúde – ICBS, Universidade Federal de Alagoas, Maceió, Brazil
| | | | - T.B. Gibertoni
- Departamento de Micologia Prof. Chaves Batista, Universidade Federal de Pernambuco, Recife, Brazil
| | - K. Hosaka
- National Museum of Nature and Science, Tsukuba, Ibaraki, Japan
| | - T. Iturriaga
- University of Illinois Urbana-Champaign, Illinois Natural History Survey, 1816 South Oak Street, Champaign, Illinois, 61820, USA
| | - M. Jadan
- Ruđer Bošković Institute, Bijenička cesta 54, 10000 Zagreb, Croatia
| | - J.-L. Jany
- Université de Brest, EA3882 Laboratoire Universitaire de Biodiversité et Ecologie Microbienne, IBSAM, ESIAB, Technopôle Brest-Iroise, 29280, Plouzané, France
| | - Ž. Jurjević
- EMSL Analytical, Inc., 200 Route 130 North, Cinnaminson, NJ 08077, USA
| | - M. Kolařík
- Department of Botany, Faculty of Science, Charles University, Benátská 2, 128 01 Prague 2, Czech Republic
- Laboratory of Fungal Genetics and Metabolism, Institute of Microbiology of the CAS, v.v.i, Vídeňská 1083, 142 20 Prague 4, Czech Republic
| | - I. Kušan
- Ruđer Bošković Institute, Bijenička cesta 54, 10000 Zagreb, Croatia
| | - M.F. Landell
- Instituto de Ciências Biológicas e da Saúde – ICBS, Universidade Federal de Alagoas, Maceió, Brazil
| | - T.R. Leite Cordeiro
- Departamento de Micologia Prof. Chaves Batista, Universidade Federal de Pernambuco, Recife, Brazil
| | - D.X. Lima
- Departamento de Micologia Prof. Chaves Batista, Universidade Federal de Pernambuco, Recife, Brazil
| | | | - S. Luo
- University of Sydney, Plant Breeding Institute, 107 Cobbitty Rd, Cobbitty 2570, New South Wales, Australia
| | - A.R. Machado
- Departamento de Micologia Prof. Chaves Batista, Universidade Federal de Pernambuco, Recife, Brazil
| | - H. Madrid
- Centro de Genómica y Bioinformática, Facultad de Ciencias, Universidad Mayor de Chile, Camino La Pirámide 5750, Huechuraba, Santiago, Chile
| | - O.M.C. Magalhães
- Departamento de Micologia Prof. Chaves Batista, Universidade Federal de Pernambuco, Recife, Brazil
| | - P. Marinho
- Departamento de Biologia Celular e Genética, Universidade Federal do Rio Grande do Norte, Natal, Rio Grande do Norte, Brazil
| | - N. Matočec
- Ruđer Bošković Institute, Bijenička cesta 54, 10000 Zagreb, Croatia
| | - A. Mešić
- Ruđer Bošković Institute, Bijenička cesta 54, 10000 Zagreb, Croatia
| | - A.N. Miller
- University of Illinois Urbana-Champaign, Illinois Natural History Survey, 1816 South Oak Street, Champaign, Illinois, 61820, USA
| | - O.V. Morozova
- Komarov Botanical Institute of the Russian Academy of Sciences, 197376, 2 Prof. Popov Str., Saint Petersburg, Russia
| | - R.P. Neves
- Departamento de Micologia Prof. Chaves Batista, Universidade Federal de Pernambuco, Recife, Brazil
| | - K. Nonaka
- Kitasato Institute for Life Sciences, Kitasato University, 5-9-1 Shirokane, Minato-ku, Tokyo 108-8641, Japan
| | - A. Nováková
- Laboratory of Fungal Genetics and Metabolism, Institute of Microbiology of the CAS, v.v.i, Vídeňská 1083, 142 20 Prague 4, Czech Republic
| | - N.H. Oberlies
- Department of Chemistry and Biochemistry, University of North Carolina, Greensboro, USA
| | - J.R.C. Oliveira-Filho
- Departamento de Micologia Prof. Chaves Batista, Universidade Federal de Pernambuco, Recife, Brazil
| | - T.G.L. Oliveira
- Departamento de Micologia Prof. Chaves Batista, Universidade Federal de Pernambuco, Recife, Brazil
| | - V. Papp
- Szent István University, Department of Botany, Budapest, Hungary
| | - O.L. Pereira
- Departamento de Fitopatologia, Universidade Federal de Viçosa, 36570-900, Viçosa, Minas Gerais, Brazil
| | - G. Perrone
- Institute of Sciences of Food Production, CNR, Via Amendola 122/O, 70126 Bari, Italy
| | - S.W. Peterson
- Mycotoxin Prevention and Applied Microbiology Research Unit, Agricultural Research Service, U.S. Department of Agriculture, 1815 North University Street, Peoria, IL 61604, USA
| | - T.H.G. Pham
- Joint Russian-Vietnamese Tropical Research and Technological Center, Hanoi, Vietnam
- Saint Petersburg State Forestry University, 194021, 5U Institutsky Str., Saint Petersburg, Russia
| | - H.A. Raja
- Department of Chemistry and Biochemistry, University of North Carolina, Greensboro, USA
| | - D.B. Raudabaugh
- University of Illinois Urbana-Champaign, Illinois Natural History Survey, 1816 South Oak Street, Champaign, Illinois, 61820, USA
| | - J. Řehulka
- Department of Zoology, Silesian Museum, Nádražní okruh 31, 746 01 Opava, Czech Republic
| | - E. Rodríguez-Andrade
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili, Sant Llorenç 21, 43201 Reus, Spain
| | - M. Saba
- Department of Botany, University of Gujrat, Hafiz Hayat campus, Gujrat 50700, Pakistan
| | - A. Schauflerová
- Veterinary clinic Fénix, Velehradská 19, 13000 Prague 3, Czech Republic
| | - R.G. Shivas
- Centre for Crop Health, University of Southern Queensland, Toowoomba 4350, Queensland, Australia
| | - G. Simonini
- Via Bell’Aria 8, I-42121 Reggio nell’Emilia, Italy
| | - J.P.Z. Siqueira
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili, Sant Llorenç 21, 43201 Reus, Spain
| | - J.O. Sousa
- Pós-graduação em Sistemática e Evolução, Universidade Federal do Rio Grande do Norte, Natal, Rio Grande do Norte, Brazil
| | - V. Stajsic
- Royal Botanic Gardens Victoria, Birdwood Avenue, Melbourne 3004, Victoria, Australia
| | - T. Svetasheva
- Komarov Botanical Institute of the Russian Academy of Sciences, 197376, 2 Prof. Popov Str., Saint Petersburg, Russia
- Biology and Technologies of Living Systems Department, Tula State Lev Tolstoy Pedagogical University, 125 Lenin av., 300026 Tula, Russia
| | - Y.P. Tan
- Plant Pathology Herbarium, Department of Agriculture and Fisheries, Dutton Park 4102, Queensland, Australia
| | - Z. Tkalčec
- Ruđer Bošković Institute, Bijenička cesta 54, 10000 Zagreb, Croatia
| | - S. Ullah
- Department of Botany, Hazara University, Mansehra, Pakistan
| | - P. Valente
- Departamento de Microbiologia, Imunologia e Parasitologia, Instituto de Ciências Básicas e da Saúde, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil
| | - N. Valenzuela-Lopez
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili, Sant Llorenç 21, 43201 Reus, Spain
- Microbiology Unit, Medical Technology Department, Faculty of Health Science, University of Antofagasta, Av. Universidad de Antofagasta s/n, 02800 Antofagasta, Chile
| | - M. Abrinbana
- Department of Plant Protection, Faculty of Agriculture, Urmia University, P.O. Box 165, Urmia, Iran
| | | | - P.T.W. Wong
- University of Sydney, Plant Breeding Institute, 107 Cobbitty Rd, Cobbitty 2570, New South Wales, Australia
| | - V. Xavier de Lima
- Departamento de Micologia Prof. Chaves Batista, Universidade Federal de Pernambuco, Recife, Brazil
| | - J.Z. Groenewald
- Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD Utrecht, The Netherlands
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Crous P, Luangsa-ard J, Wingfield M, Carnegie A, Hernández-Restrepo M, Lombard L, Roux J, Barreto R, Baseia I, Cano-Lira J, Martín M, Morozova O, Stchigel A, Summerell B, Brandrud T, Dima B, García D, Giraldo A, Guarro J, Gusmão L, Khamsuntorn P, Noordeloos M, Nuankaew S, Pinruan U, Rodríguez-Andrade E, Souza-Motta C, Thangavel R, van Iperen A, Abreu V, Accioly T, Alves J, Andrade J, Bahram M, Baral HO, Barbier E, Barnes C, Bendiksen E, Bernard E, Bezerra J, Bezerra J, Bizio E, Blair J, Bulyonkova T, Cabral T, Caiafa M, Cantillo T, Colmán A, Conceição L, Cruz S, Cunha A, Darveaux B, da Silva A, da Silva G, da Silva G, da Silva R, de Oliveira R, Oliveira R, De Souza J, Dueñas M, Evans H, Epifani F, Felipe M, Fernández-López J, Ferreira B, Figueiredo C, Filippova N, Flores J, Gené J, Ghorbani G, Gibertoni T, Glushakova A, Healy R, Huhndorf S, Iturrieta-González I, Javan-Nikkhah M, Juciano R, Jurjević Ž, Kachalkin A, Keochanpheng K, Krisai-Greilhuber I, Li YC, Lima A, Machado A, Madrid H, Magalhães O, Marbach P, Melanda G, Miller A, Mongkolsamrit S, Nascimento R, Oliveira T, Ordoñez M, Orzes R, Palma M, Pearce C, Pereira O, Perrone G, Peterson S, Pham T, Piontelli E, Pordel A, Quijada L, Raja H, Rosas de Paz E, Ryvarden L, Saitta A, Salcedo S, Sandoval-Denis M, Santos T, Seifert K, Silva B, Smith M, Soares A, Sommai S, Sousa J, Suetrong S, Susca A, Tedersoo L, Telleria M, Thanakitpipattana D, Valenzuela-Lopez N, Visagie C, Zapata M, Groenewald J. Fungal Planet description sheets: 785-867. PERSOONIA 2018; 41:238-417. [PMID: 30728607 PMCID: PMC6344811 DOI: 10.3767/persoonia.2018.41.12] [Citation(s) in RCA: 129] [Impact Index Per Article: 21.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/20/2018] [Accepted: 11/15/2018] [Indexed: 11/25/2022]
Abstract
Novel species of fungi described in this study include those from various countries as follows: Angola, Gnomoniopsis angolensis and Pseudopithomyces angolensis on unknown host plants. Australia, Dothiora corymbiae on Corymbia citriodora, Neoeucasphaeria eucalypti (incl. Neoeucasphaeria gen. nov.) on Eucalyptus sp., Fumagopsis stellae on Eucalyptus sp., Fusculina eucalyptorum (incl. Fusculinaceae fam. nov.) on Eucalyptus socialis, Harknessia corymbiicola on Corymbia maculata, Neocelosporium eucalypti (incl. Neocelosporium gen. nov., Neocelosporiaceae fam. nov. and Neocelosporiales ord. nov.) on Eucalyptus cyanophylla, Neophaeomoniella corymbiae on Corymbia citriodora, Neophaeomoniella eucalyptigena on Eucalyptus pilularis, Pseudoplagiostoma corymbiicola on Corymbia citriodora, Teratosphaeria gracilis on Eucalyptus gracilis, Zasmidium corymbiae on Corymbia citriodora. Brazil, Calonectria hemileiae on pustules of Hemileia vastatrix formed on leaves of Coffea arabica, Calvatia caatinguensis on soil, Cercospora solani-betacei on Solanum betaceum, Clathrus natalensis on soil, Diaporthe poincianellae on Poincianella pyramidalis, Geastrum piquiriunense on soil, Geosmithia carolliae on wing of Carollia perspicillata, Henningsia resupinata on wood, Penicillium guaibinense from soil, Periconia caespitosa from leaf litter, Pseudocercospora styracina on Styrax sp., Simplicillium filiforme as endophyte from Citrullus lanatus, Thozetella pindobacuensis on leaf litter, Xenosonderhenia coussapoae on Coussapoa floccosa. Canary Islands (Spain), Orbilia amarilla on Euphorbia canariensis. Cape Verde Islands, Xylodon jacobaeus on Eucalyptus camaldulensis. Chile, Colletotrichum arboricola on Fuchsia magellanica. Costa Rica, Lasiosphaeria miniovina on tree branch. Ecuador, Ganoderma chocoense on tree trunk. France, Neofitzroyomyces nerii (incl. Neofitzroyomyces gen. nov.) on Nerium oleander. Ghana, Castanediella tereticornis on Eucalyptus tereticornis, Falcocladium africanum on Eucalyptus brassiana, Rachicladosporium corymbiae on Corymbia citriodora. Hungary, Entoloma silvae-frondosae in Carpinus betulus-Pinus sylvestris mixed forest. Iran, Pseudopyricularia persiana on Cyperus sp. Italy, Inocybe roseascens on soil in mixed forest. Laos, Ophiocordyceps houaynhangensis on Coleoptera larva. Malaysia, Monilochaetes melastomae on Melastoma sp. Mexico, Absidia terrestris from soil. Netherlands, Acaulium pannemaniae, Conioscypha boutwelliae, Fusicolla septimanifiniscientiae, Gibellulopsis simonii, Lasionectria hilhorstii, Lectera nordwiniana, Leptodiscella rintelii, Parasarocladium debruynii and Sarocladium dejongiae (incl. Sarocladiaceae fam. nov.) from soil. New Zealand, Gnomoniopsis rosae on Rosa sp. and Neodevriesia metrosideri on Metrosideros sp. Puerto Rico, Neodevriesia coccolobae on Coccoloba uvifera, Neodevriesia tabebuiae and Alfaria tabebuiae on Tabebuia chrysantha. Russia, Amanita paludosa on bogged soil in mixed deciduous forest, Entoloma tiliae in forest of Tilia × europaea, Kwoniella endophytica on Pyrus communis. South Africa, Coniella diospyri on Diospyros mespiliformis, Neomelanconiella combreti (incl. Neomelanconiellaceae fam. nov. and Neomelanconiella gen. nov.) on Combretum sp., Polyphialoseptoria natalensis on unidentified plant host, Pseudorobillarda bolusanthi on Bolusanthus speciosus, Thelonectria pelargonii on Pelargonium sp. Spain, Vermiculariopsiella lauracearum and Anungitopsis lauri on Laurus novocanariensis, Geosmithia xerotolerans from a darkened wall of a house, Pseudopenidiella gallaica on leaf litter. Thailand, Corynespora thailandica on wood, Lareunionomyces loeiensis on leaf litter, Neocochlearomyces chromolaenae (incl. Neocochlearomyces gen. nov.) on Chromolaena odorata, Neomyrmecridium septatum (incl. Neomyrmecridium gen. nov.), Pararamichloridium caricicola on Carex sp., Xenodactylaria thailandica (incl. Xenodactylariaceae fam. nov. and Xenodactylaria gen. nov.), Neomyrmecridium asiaticum and Cymostachys thailandica from unidentified vine. USA, Carolinigaster bonitoi (incl. Carolinigaster gen. nov.) from soil, Penicillium fortuitum from house dust, Phaeotheca shathenatiana (incl. Phaeothecaceae fam. nov.) from twig and cone litter, Pythium wohlseniorum from stream water, Superstratomyces tardicrescens from human eye, Talaromyces iowaense from office air. Vietnam, Fistulinella olivaceoalba on soil. Morphological and culture characteristics along with DNA barcodes are provided.
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Affiliation(s)
- P.W. Crous
- Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD Utrecht, The Netherlands
- Department of Genetics, Biochemistry and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, P. Bag X20, Pretoria 0028, South Africa
| | - J.J. Luangsa-ard
- Microbe Interaction and Ecology Laboratory, National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Phahonyothin Rd., Khlong Nueng, Khlong Luang, Pathum Thani 12120, Thailand
| | - M.J. Wingfield
- Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria 0002, South Africa
| | - A.J. Carnegie
- Forest Health & Biosecurity, NSW Department of Primary Industries –Forestry, Level 12, 10 Valentine Ave, Parramatta NSW 2150, NSW 2124, Australia
| | - M. Hernández-Restrepo
- Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD Utrecht, The Netherlands
| | - L. Lombard
- Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD Utrecht, The Netherlands
| | - J. Roux
- Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria 0002, South Africa
| | - R.W. Barreto
- Departamento de Fitopatologia, Universidade Federal de Viçosa, 36570-900, Viçosa, Minas Gerais, Brazil
| | - I.G. Baseia
- Departamento Botânica e Zoologia, Centro de Biociências, Universidade Federal do Rio Grande do Norte, Campus Universitário, 59072–970 Natal, RN, Brazil
| | - J.F. Cano-Lira
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili (URV), Sant Llorenç 21, 43201 Reus, Tarragona, Spain
| | - M.P. Martín
- Department of Mycology, Real Jardín Botánico RJB-CSIC, Plaza de Murillo 2, 28014 Madrid, Spain
| | - O.V. Morozova
- Komarov Botanical Institute of the Russian Academy of Sciences, 197376, 2 Prof. Popov Str., Saint Petersburg, Russia
| | - A.M. Stchigel
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili (URV), Sant Llorenç 21, 43201 Reus, Tarragona, Spain
| | - B.A. Summerell
- Royal Botanic Gardens and Domain Trust, Mrs Macquaries Rd, Sydney, NSW 2000, Australia
| | - T.E. Brandrud
- Norwegian Institute for Nature Research Gaustadalléen 21, NO-0349 Oslo, Norway
| | - B. Dima
- Department of Plant Anatomy, Institute of Biology, Eötvös Loránd University, Pázmány Péter sétány 1/C, H-1117, Budapest, Hungary
| | - D. García
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili (URV), Sant Llorenç 21, 43201 Reus, Tarragona, Spain
| | - A. Giraldo
- Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD Utrecht, The Netherlands
- Faculty of Natural and Agricultural Sciences, Department of Plant Sciences, University of the Free State, P.O. Box 339, Bloemfontein 9300, South Africa
| | - J. Guarro
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili (URV), Sant Llorenç 21, 43201 Reus, Tarragona, Spain
| | - L.F.P. Gusmão
- Universidade Estadual de Feira de Santana, Av. Transnordestina, S/N – Novo Horizonte, 44036-900. Feira de Santana, BA, Brazil
| | - P. Khamsuntorn
- Microbe Interaction and Ecology Laboratory, National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Phahonyothin Rd., Khlong Nueng, Khlong Luang, Pathum Thani 12120, Thailand
| | - M.E. Noordeloos
- Naturalis Biodiversity Center, section Botany, P.O. Box 9517, 2300 RA Leiden, The Netherlands
| | - S. Nuankaew
- Fungal Biodiversity Laboratory, National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Phahonyothin Rd., Khlong Nueng, Khlong Luang, Pathum Thani 12120, Thailand
| | - U. Pinruan
- Microbe Interaction and Ecology Laboratory, National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Phahonyothin Rd., Khlong Nueng, Khlong Luang, Pathum Thani 12120, Thailand
| | - E. Rodríguez-Andrade
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili (URV), Sant Llorenç 21, 43201 Reus, Tarragona, Spain
| | - C.M. Souza-Motta
- Departamento de Micologia Prof. Chaves Batista, Universidade Federal de Pernambuco, Recife, Brazil
| | - R. Thangavel
- Plant Health and Environment Laboratory, Ministry for Primary Industries, P.O. Box 2095, Auckland 1140, New Zealand
| | - A.L. van Iperen
- Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD Utrecht, The Netherlands
| | - V.P. Abreu
- Departamento de Microbiologia, Universidade Federal de Viçosa, 36570-000, Viçosa, Minas Gerais, Brazil
| | - T. Accioly
- Programa de Pós-graduação em Sistemática e Evolução, Universidade Federal do Rio Grande do Norte, Natal, Rio Grande do Norte, Brazil
| | - J.L. Alves
- Departamento de Fitopatologia, Universidade Federal de Viçosa, 36570-900, Viçosa, Minas Gerais, Brazil
| | - J.P. Andrade
- Universidade Estadual de Feira de Santana, Av. Transnordestina, S/N – Novo Horizonte, 44036-900. Feira de Santana, BA, Brazil
| | - M. Bahram
- Department of Botany, Institute of Ecology and Earth Sciences, University of Tartu, 40 Lai St., 51005 Tartu, Estonia
- Department of Organismal Biology, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18D, 75236 Uppsala, Sweden
| | | | - E. Barbier
- Departamento de Zoologia, Universidade Federal de Pernambuco, Recife, Brazil
| | - C.W. Barnes
- Instituto Nacional de Investigaciones Agropecuarias, Estación Experimental Santa Catalina, Panamericana Sur Km 1, Sector Cutuglahua, Pichincha, Ecuador
| | - E. Bendiksen
- Norwegian Institute for Nature Research Gaustadalléen 21, NO-0349 Oslo, Norway
| | - E. Bernard
- Departamento de Zoologia, Universidade Federal de Pernambuco, Recife, Brazil
| | - J.D.P. Bezerra
- Departamento de Micologia Prof. Chaves Batista, Universidade Federal de Pernambuco, Recife, Brazil
| | - J.L. Bezerra
- Departamento de Micologia Prof. Chaves Batista, Universidade Federal de Pernambuco, Recife, Brazil
| | - E. Bizio
- Società Veneziana di Micologia, S. Croce 1730, 30135, Venezia, Italy
- Department of Organismal Biology, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18D, 75236 Uppsala, Sweden
| | - J.E. Blair
- Department of Biology, Franklin & Marshall College, 415 Harrisburg Avenue, Lancaster, PA 17603 USA
| | - T.M. Bulyonkova
- A.P. Ershov Institute of Informatics Systems, Siberian Branch of the Russian Academy of Sciences, 630090, 6 Acad. Lavrentieva pr., Novosibirsk, Russia
| | - T.S. Cabral
- Departamento de Biologia Celular e Genética, Universidade Federal do Rio Grande do Norte, Natal, Rio Grande do Norte, Brazil
| | - M.V. Caiafa
- Department of Plant Pathology & Florida Museum of Natural History, 2527 Fifield Hall, Gainesville FL 32611, USA
| | - T. Cantillo
- Universidade Estadual de Feira de Santana, Av. Transnordestina, S/N – Novo Horizonte, 44036-900. Feira de Santana, BA, Brazil
| | - A.A. Colmán
- Departamento de Fitopatologia, Universidade Federal de Viçosa, 36570-900, Viçosa, Minas Gerais, Brazil
| | - L.B. Conceição
- Universidade Estadual de Feira de Santana, Av. Transnordestina, S/N – Novo Horizonte, 44036-900. Feira de Santana, BA, Brazil
| | - S. Cruz
- Department of Plant Pathology & Florida Museum of Natural History, 2527 Fifield Hall, Gainesville FL 32611, USA
| | - A.O.B. Cunha
- Departamento de Micologia Prof. Chaves Batista, Universidade Federal de Pernambuco, Recife, Brazil
| | - B.A. Darveaux
- Mycosynthetix, Inc., 505 Meadowlands Dr., Suite 103, Hillsborough, North Carolina, 27278 USA
| | - A.L. da Silva
- Departamento de Fitopatologia, Universidade Federal de Viçosa, 36570-900, Viçosa, Minas Gerais, Brazil
| | - G.A. da Silva
- Departamento de Micologia Prof. Chaves Batista, Universidade Federal de Pernambuco, Recife, Brazil
| | - G.M. da Silva
- Departamento Botânica e Zoologia, Centro de Biociências, Universidade Federal do Rio Grande do Norte, Campus Universitário, 59072–970 Natal, RN, Brazil
| | - R.M.F. da Silva
- Departamento de Micologia Prof. Chaves Batista, Universidade Federal de Pernambuco, Recife, Brazil
| | - R.J.V. de Oliveira
- Departamento de Micologia Prof. Chaves Batista, Universidade Federal de Pernambuco, Recife, Brazil
| | - R.L. Oliveira
- Programa de Pós-graduação em Sistemática e Evolução, Universidade Federal do Rio Grande do Norte, Natal, Rio Grande do Norte, Brazil
| | | | - M. Dueñas
- Department of Mycology, Real Jardín Botánico RJB-CSIC, Plaza de Murillo 2, 28014 Madrid, Spain
| | - H.C. Evans
- CAB International, Bakeham Lane, Egham, TW20 9TY, Surrey, UK
| | - F. Epifani
- Institute of Sciences of Food Production, CNR, Via Amendola 122/O, 70126 Bari, Italy
| | - M.T.C. Felipe
- Departamento de Micologia Prof. Chaves Batista, Universidade Federal de Pernambuco, Recife, Brazil
| | - J. Fernández-López
- Department of Mycology, Real Jardín Botánico RJB-CSIC, Plaza de Murillo 2, 28014 Madrid, Spain
| | - B.W. Ferreira
- Departamento de Fitopatologia, Universidade Federal de Viçosa, 36570-900, Viçosa, Minas Gerais, Brazil
| | | | - N.V. Filippova
- Yugra State University, 16, Chekhova Str., 628012, Khanty-Mansiysk, Russia
| | - J.A. Flores
- Escuela de Ciencias Biológicas, Pontificia Universidad Católica del Ecuador, Av. 12 de octubre 1076 y Roca, Quito, Ecuador
| | - J. Gené
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili (URV), Sant Llorenç 21, 43201 Reus, Tarragona, Spain
| | - G. Ghorbani
- Department of Plant Protection, College of Agriculture and Natural Resources, University of Tehran, Karaj 31587-77871, Iran
| | - T.B. Gibertoni
- Departamento de Micologia, Universidade Federal de Pernambuco, Avenida da Engenharia, S/N – Cidade Universitária, Recife, PE, Brazil
| | - A.M. Glushakova
- Lomonosov Moscow State University, Moscow / All-Russian Collection of Microorganisms, G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms RAS, Pushchino, Russia
| | - R. Healy
- Department of Plant Pathology & Florida Museum of Natural History, 2527 Fifield Hall, Gainesville FL 32611, USA
| | - S.M. Huhndorf
- The Field Museum, Department of Botany, 1400 South Lake Shore Drive, Chicago, Illinois, 60605-2496, USA
| | - I. Iturrieta-González
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili (URV), Sant Llorenç 21, 43201 Reus, Tarragona, Spain
| | - M. Javan-Nikkhah
- Department of Plant Protection, College of Agriculture and Natural Resources, University of Tehran, Karaj 31587-77871, Iran
| | - R.F. Juciano
- Programa de Pós-Graduação em Biologia de Fungos, Departamento de Micologia, Universidade Federal de Pernambuco, 50670-420 Recife, PE, Brazil
| | - Ž. Jurjević
- EMSL Analytical, Inc., 200 Route 130 North, Cinnaminson, NJ 08077, USA
| | - A.V. Kachalkin
- Lomonosov Moscow State University, Moscow / All-Russian Collection of Microorganisms, G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms RAS, Pushchino, Russia
| | | | - I. Krisai-Greilhuber
- Department of Botany and Biodiversity Research, University of Vienna, Rennweg 14, 1030 Wien, Austria
| | - Y.-C. Li
- Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Heilongtan, Kunming 650201, Yunnan, China
| | - A.A. Lima
- Programa de Pós-graduação em Sistemática e Evolução, Universidade Federal do Rio Grande do Norte, Natal, Rio Grande do Norte, Brazil
| | - A.R. Machado
- Departamento de Micologia Prof. Chaves Batista, Universidade Federal de Pernambuco, Recife, Brazil
| | - H. Madrid
- Centro de Genómica y Bioinformática, Facultad de Ciencias, Universidad Mayor, Camino La Pirámide 5750, Huechuraba, Santiago, Chile
| | - O.M.C. Magalhães
- Departamento de Micologia Prof. Chaves Batista, Universidade Federal de Pernambuco, Recife, Brazil
| | | | - G.C.S. Melanda
- Programa de Pós-Graduação em Biologia de Fungos, Departamento de Micologia, Universidade Federal de Pernambuco, 50670-420 Recife, PE, Brazil
| | - A.N. Miller
- University of Illinois Urbana-Champaign, Illinois Natural History Survey, 1816 South Oak Street, Champaign, Illinois, 61820, USA
| | - S. Mongkolsamrit
- Microbe Interaction and Ecology Laboratory, National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Phahonyothin Rd., Khlong Nueng, Khlong Luang, Pathum Thani 12120, Thailand
| | | | - T.G.L. Oliveira
- Departamento de Micologia Prof. Chaves Batista, Universidade Federal de Pernambuco, Recife, Brazil
| | - M.E. Ordoñez
- Escuela de Ciencias Biológicas, Pontificia Universidad Católica del Ecuador, Av. 12 de octubre 1076 y Roca, Quito, Ecuador
| | - R. Orzes
- Gruppo Micologico Bresadola di Belluno, Via Bries 25, Agordo, 32021, Italy
| | - M.A. Palma
- Servicio Agrícola y Ganadero, Laboratorio Regional Valparaíso, Unidad de Fitopatología, Varas 120, Código Postal 2360451, Valparaíso, Chile
| | - C.J. Pearce
- Mycosynthetix, Inc., 505 Meadowlands Dr., Suite 103, Hillsborough, North Carolina, 27278 USA
| | - O.L. Pereira
- Departamento de Fitopatologia, Universidade Federal de Viçosa, 36570-900, Viçosa, Minas Gerais, Brazil
| | - G. Perrone
- Institute of Sciences of Food Production, CNR, Via Amendola 122/O, 70126 Bari, Italy
| | - S.W. Peterson
- Mycotoxin Prevention and Applied Microbiology Research Unit, Agricultural Research Service, U.S. Department of Agriculture, 1815 North University Street, Peoria, IL 61604, USA
| | - T.H.G. Pham
- Saint Petersburg State Forestry University, 194021, 5U Institutsky Str., Saint Petersburg, Russia / Joint Russian-Vietnamese Tropical Research and Technological Center, Hanoi, Vietnam
| | - E. Piontelli
- Universidad de Valparaíso, Facultad de Medicina, Profesor Emérito Cátedra de Micología, Hontaneda 2653, Código Postal 2341369, Valparaíso Chile
| | - A. Pordel
- Department of Plant Protection, College of Agriculture and Natural Resources, University of Tehran, Karaj 31587-77871, Iran
| | - L. Quijada
- Department of Organismic and Evolutionary Biology, Farlow Reference Library and Herbarium of Cryptogamic Botany, Harvard University, 22 Divinity Avenue, Cambridge MA 02138, USA
| | - H.A. Raja
- Department of Chemistry and Biochemistry, University of North Carolina at Greensboro, 435 Sullivan Science Building, PO Box 26170, Greensboro, NC 27402-6170, USA
| | - E. Rosas de Paz
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili (URV), Sant Llorenç 21, 43201 Reus, Tarragona, Spain
- Laboratory of Medical Bacteriology, Microbiology Department, ENCB-IPN, Prolongación Manuel Carpio y Plan de Ayala s/n, Miguel Hidalgo, Santo Tomás, 11350 Ciudad de México, D.F., México
| | - L. Ryvarden
- University of Oslo, Department of Botany, P.O. Box 1045, Blindern, N-0316, Oslo, Norway
| | - A. Saitta
- Department of Agricultural, Food and Forest Sciences, University of Palermo, Viale delle Scienze, Palermo, 90128, Italy
| | - S.S. Salcedo
- Departamento de Fitopatologia, Universidade Federal de Viçosa, 36570-900, Viçosa, Minas Gerais, Brazil
| | - M. Sandoval-Denis
- Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD Utrecht, The Netherlands
- Faculty of Natural and Agricultural Sciences, Department of Plant Sciences, University of the Free State, P.O. Box 339, Bloemfontein 9300, South Africa
| | - T.A.B. Santos
- Universidade Estadual de Feira de Santana, Av. Transnordestina, S/N – Novo Horizonte, 44036-900. Feira de Santana, BA, Brazil
| | - K.A. Seifert
- Biodiversity (Mycology), Agriculture and Agri-Food Canada, Ottawa, ON K1A 0C6, Canada, and Department of Biology, University of Ottawa, 30 Marie-Curie, Ottawa, ON K1N 6N5, Canada
| | - B.D.B. Silva
- Instituto de Biologia, Universidade Federal da Bahia Salvador, Bahia, Brazil
| | - M.E. Smith
- Department of Plant Pathology & Florida Museum of Natural History, 2527 Fifield Hall, Gainesville FL 32611, USA
| | - A.M. Soares
- Departamento de Micologia, Universidade Federal de Pernambuco, Avenida da Engenharia, S/N – Cidade Universitária, Recife, PE, Brazil
| | - S. Sommai
- Microbe Interaction and Ecology Laboratory, National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Phahonyothin Rd., Khlong Nueng, Khlong Luang, Pathum Thani 12120, Thailand
| | - J.O. Sousa
- Programa de Pós-graduação em Sistemática e Evolução, Universidade Federal do Rio Grande do Norte, Natal, Rio Grande do Norte, Brazil
| | - S. Suetrong
- Fungal Biodiversity Laboratory, National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Phahonyothin Rd., Khlong Nueng, Khlong Luang, Pathum Thani 12120, Thailand
| | - A. Susca
- Institute of Sciences of Food Production, CNR, Via Amendola 122/O, 70126 Bari, Italy
| | - L. Tedersoo
- Department of Botany, Institute of Ecology and Earth Sciences, University of Tartu, 40 Lai St., 51005 Tartu, Estonia
| | - M.T. Telleria
- Department of Mycology, Real Jardín Botánico RJB-CSIC, Plaza de Murillo 2, 28014 Madrid, Spain
| | - D. Thanakitpipattana
- Microbe Interaction and Ecology Laboratory, National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Phahonyothin Rd., Khlong Nueng, Khlong Luang, Pathum Thani 12120, Thailand
| | - N. Valenzuela-Lopez
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili (URV), Sant Llorenç 21, 43201 Reus, Tarragona, Spain
- Microbiology Unit, Medical Technology Department, Faculty of Health Science, University of Antofagasta, Av. Universidad de Antofagasta s/n, 02800 Antofagasta, Chile
| | - C.M. Visagie
- Biosystematics Division, Agricultural Research Council – Plant Health and Protection, Private Bag X134, Queenswood, Pretoria 0121, South Africa
| | - M. Zapata
- Servicio Agrícola y Ganadero, Laboratorio Regional Chillán, Unidad de Fitopatología, Claudio Arrau 738, Chillán, Código Postal 3800773, Chile
| | - J.Z. Groenewald
- Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD Utrecht, The Netherlands
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Colletotrichum species associated with anthracnose of Pyrus spp. in China. Persoonia - Molecular Phylogeny and Evolution of Fungi 2018; 42:1-35. [PMID: 31551612 PMCID: PMC6712541 DOI: 10.3767/persoonia.2019.42.01] [Citation(s) in RCA: 71] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/30/2018] [Accepted: 06/20/2018] [Indexed: 11/25/2022]
Abstract
Colletotrichum species are plant pathogens, saprobes, and endophytes on a range of economically important hosts. However, the species occurring on pear remain largely unresolved. To determine the morphology, phylogeny and biology of Colletotrichum species associated with Pyrus plants, a total of 295 samples were collected from cultivated pear species (including P. pyrifolia, P. bretschneideri, and P. communis) from seven major pear-cultivation provinces in China. The pear leaves and fruits affected by anthracnose were sampled and subjected to fungus isolation, resulting in a total of 488 Colletotrichum isolates. Phylogenetic analyses based on six loci (ACT, TUB2, CAL, CHS-1, GAPDH, and ITS) coupled with morphology of 90 representative isolates revealed that they belong to 10 known Colletotrichum species, including C. aenigma, C. citricola, C. conoides, C. fioriniae, C. fructicola, C. gloeosporioides, C. karstii, C. plurivorum, C. siamense, C. wuxiense, and two novel species, described here as C. jinshuiense and C. pyrifoliae. Of these, C. fructicola was the most dominant, occurring on P. pyrifolia and P. bretschneideri in all surveyed provinces except in Shandong, where C. siamense was dominant. In contrast, only C. siamense and C. fioriniae were isolated from P. communis, with the former being dominant. In order to prove Koch’s postulates, pathogenicity tests on pear leaves and fruits revealed a broad diversity in pathogenicity and aggressiveness among the species and isolates, of which C. citricola, C. jinshuiense, C. pyrifoliae, and C. conoides appeared to be organ-specific on either leaves or fruits. This study also represents the first reports of C. citricola, C. conoides, C. karstii, C. plurivorum, C. siamense, and C. wuxiense causing anthracnose on pear.
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Roof-Inhabiting Cousins of Rock-Inhabiting Fungi: Novel Melanized Microcolonial Fungal Species from Photocatalytically Reactive Subaerial Surfaces. Life (Basel) 2018; 8:life8030030. [PMID: 30011950 PMCID: PMC6161114 DOI: 10.3390/life8030030] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2018] [Revised: 07/10/2018] [Accepted: 07/11/2018] [Indexed: 11/28/2022] Open
Abstract
Subaerial biofilms (SAB) are an important factor in weathering, biofouling, and biodeterioration of bare rocks, building materials, and solar panel surfaces. The realm of SAB is continually widened by modern materials, and the settlers on these exposed solid surfaces always include melanized, stress-tolerant microcolonial ascomycetes. After their first discovery on desert rock surfaces, these melanized chaetothyrialean and dothidealean ascomycetes have been found on Mediterranean monuments after biocidal treatments, Antarctic rocks and solar panels. New man-made modifications of surfaces (e.g., treatment with biocides or photocatalytically active layers) accommodate the exceptional stress-tolerance of microcolonial fungi and thus further select for this well-protected ecological group. Melanized fungal strains were isolated from a microbial community that developed on highly photocatalytic roof tiles after a long-term environmental exposure in a maritime-influenced region in northwestern Germany. Four of the isolated strains are described here as a novel species, Constantinomyces oldenburgensis, based on multilocus ITS, LSU, RPB2 gene phylogeny. Their closest relative is a still-unnamed rock-inhabiting strain TRN431, here described as C. patonensis. Both species cluster in Capnodiales, among typical melanized microcolonial rock fungi from different stress habitats, including Antarctica. These novel strains flourish in hostile conditions of highly oxidizing material surfaces, and shall be used in reference procedures in material testing.
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Colletotrichum Species Causing Anthracnose of Rubber Trees in China. Sci Rep 2018; 8:10435. [PMID: 29992950 PMCID: PMC6041288 DOI: 10.1038/s41598-018-28166-7] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2018] [Accepted: 06/06/2018] [Indexed: 11/08/2022] Open
Abstract
Anthracnose caused by Colletotrichum is one of the most severe diseases of Hevea brasiliensis. However, research on the diversity and geographical distribution of Colletotrichum remains limited in China. In this study, we investigated the phylogenetic diversity of Colletotrichum isolates associated with symptomatic tissues of H.brasiliensis from four provinces of China (Hainan, Guangdong, Guangxi, and Yunnan). Based on multi-locus phylogenetic analyses and phenotypic characteristics, five species were distinguished, including two known species (C. fructicola, C. siamense), one novel species of C. gloeosporioides species complex (C. ledongense), and two novel species of C. acutatum species complex (C. bannanense and C. australisinense). Of these, C. siamense and C. australisinense have been recognized as major causative agents of anthracnose of H. brasiliensis.
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Wingfield BD, Liu M, Nguyen HDT, Lane FA, Morgan SW, De Vos L, Wilken PM, Duong TA, Aylward J, Coetzee MPA, Dadej K, De Beer ZW, Findlay W, Havenga M, Kolařík M, Menzies JG, Naidoo K, Pochopski O, Shoukouhi P, Santana QC, Seifert KA, Soal N, Steenkamp ET, Tatham CT, van der Nest MA, Wingfield MJ. Nine draft genome sequences of Claviceps purpurea s.lat., including C. arundinis, C. humidiphila, and C. cf. spartinae, pseudomolecules for the pitch canker pathogen Fusarium circinatum, draft genome of Davidsoniella eucalypti, Grosmannia galeiformis, Quambalaria eucalypti, and Teratosphaeria destructans. IMA Fungus 2018; 9:401-418. [PMID: 30622889 PMCID: PMC6317589 DOI: 10.5598/imafungus.2018.09.02.10] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2018] [Accepted: 11/26/2018] [Indexed: 12/14/2022] Open
Abstract
This genome announcement includes draft genomes from Claviceps purpurea s.lat., including C. arundinis, C. humidiphila and C. cf. spartinae. The draft genomes of Davidsoniella eucalypti, Quambalaria eucalypti and Teratosphaeria destructans, all three important eucalyptus pathogens, are presented. The insect associate Grosmannia galeiformis is also described. The pine pathogen genome of Fusarium circinatum has been assembled into pseudomolecules, based on additional sequence data and by harnessing the known synteny within the Fusarium fujikuroi species complex. This new assembly of the F. circinatum genome provides 12 pseudomolecules that correspond to the haploid chromosome number of F. circinatum. These are comparable to other chromosomal assemblies within the FFSC and will enable more robust genomic comparisons within this species complex.
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Affiliation(s)
- Brenda D Wingfield
- Department of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private Bag x20, Hatfield, Pretoria, 0028, South Africa
| | - Miao Liu
- Ottawa Research & Development Centre, Agriculture and Agri-Food Canada, 960 Carling Ave. Ottawa, Ontario K1A 0C6, Canada
| | - Hai D T Nguyen
- Ottawa Research & Development Centre, Agriculture and Agri-Food Canada, 960 Carling Ave. Ottawa, Ontario K1A 0C6, Canada
| | - Frances A Lane
- Department of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private Bag x20, Hatfield, Pretoria, 0028, South Africa
| | - Seamus W Morgan
- Department of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private Bag x20, Hatfield, Pretoria, 0028, South Africa
| | - Lieschen De Vos
- Department of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private Bag x20, Hatfield, Pretoria, 0028, South Africa
| | - P Markus Wilken
- Department of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private Bag x20, Hatfield, Pretoria, 0028, South Africa
| | - Tuan A Duong
- Department of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private Bag x20, Hatfield, Pretoria, 0028, South Africa
| | - Janneke Aylward
- Department of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private Bag x20, Hatfield, Pretoria, 0028, South Africa
- Department of Conservation Ecology and Entomology, Stellenbosch University, Private Bag X1, Matieland 7602, South Africa
| | - Martin P A Coetzee
- Department of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private Bag x20, Hatfield, Pretoria, 0028, South Africa
| | - Kasia Dadej
- Ottawa Research & Development Centre, Agriculture and Agri-Food Canada, 960 Carling Ave. Ottawa, Ontario K1A 0C6, Canada
| | - Z Wilhelm De Beer
- Department of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private Bag x20, Hatfield, Pretoria, 0028, South Africa
| | - Wendy Findlay
- Ottawa Research & Development Centre, Agriculture and Agri-Food Canada, 960 Carling Ave. Ottawa, Ontario K1A 0C6, Canada
| | - Minette Havenga
- Department of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private Bag x20, Hatfield, Pretoria, 0028, South Africa
- Department of Conservation Ecology and Entomology, Stellenbosch University, Private Bag X1, Matieland 7602, South Africa
| | - Miroslav Kolařík
- Laboratory of Fungal Genetics and Metabolism, Institute of Microbiology, Academy of Sciences of Czech Republic, Videnska 1083, 142 20 Prague 4, Czech Republic
| | - Jim G Menzies
- Morden Research and Development Centre, Agriculture and Agri-Food Canada, 101 Route 100, Morden, Manitoba R6M 1Y5, Canada
| | - Kershney Naidoo
- Department of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private Bag x20, Hatfield, Pretoria, 0028, South Africa
| | - Olivia Pochopski
- Ottawa Research & Development Centre, Agriculture and Agri-Food Canada, 960 Carling Ave. Ottawa, Ontario K1A 0C6, Canada
| | - Parivash Shoukouhi
- Ottawa Research & Development Centre, Agriculture and Agri-Food Canada, 960 Carling Ave. Ottawa, Ontario K1A 0C6, Canada
| | - Quentin C Santana
- Department of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private Bag x20, Hatfield, Pretoria, 0028, South Africa
| | - Keith A Seifert
- Ottawa Research & Development Centre, Agriculture and Agri-Food Canada, 960 Carling Ave. Ottawa, Ontario K1A 0C6, Canada
| | - Nicole Soal
- Department of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private Bag x20, Hatfield, Pretoria, 0028, South Africa
| | - Emma T Steenkamp
- Department of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private Bag x20, Hatfield, Pretoria, 0028, South Africa
| | - Catherine T Tatham
- Department of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private Bag x20, Hatfield, Pretoria, 0028, South Africa
| | - Margriet A van der Nest
- Department of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private Bag x20, Hatfield, Pretoria, 0028, South Africa
| | - Michael J Wingfield
- Department of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private Bag x20, Hatfield, Pretoria, 0028, South Africa
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Bakhshi M, Arzanlou M, Babai-Ahari A, Groenewald JZ, Crous PW. Novel primers improve species delimitation in Cercospora. IMA Fungus 2018; 9:299-332. [PMID: 30622885 PMCID: PMC6317581 DOI: 10.5598/imafungus.2018.09.02.06] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2018] [Accepted: 09/11/2018] [Indexed: 11/23/2022] Open
Abstract
The genus Cercospora includes many important plant pathogens that are commonly associated with leaf spot diseases on a wide range of cultivated and wild plant species. Due to the lack of useful morphological features and high levels of intraspecific variation, host plant association has long been a decisive criterion for species delimitation in Cercospora. Because several taxa have broader host ranges, reliance on host data in Cercospora taxonomy has proven problematic. Recent studies have revealed multi-gene DNA sequence data to be highly informative for species identification in Cercospora, especially when used in a concatenated alignment. In spite of this approach, however, several species complexes remained unresolved as no single gene proved informative enough to act as DNA barcoding locus for the genus. Therefore, the aims of the present study were firstly to improve species delimitation in the genus Cercospora by testing additional genes and primers on a broad set of species, and secondly to find the best DNA barcoding gene(s) for species delimitation. Novel primers were developed for tub2 and rpb2 to supplement previously published primers for these loci. To this end, 145 Cercospora isolates from the Iranian mycobiota together with 25 additional reference isolates preserved in the Westerdijk Fungal Biodiversity Institute were subjected to an eight-gene (ITS, tef1, actA, cmdA, his3, tub2, rpb2 and gapdh) analysis. Results from this study provided new insights into DNA barcoding in Cercospora, and revealed gapdh to be a promising gene for species delimitation when supplemented with cmdA, tef1 and tub2. The robust eight-gene phylogeny revealed several novel clades within the existing Cercospora species complexes, such as C. apii, C. armoraciae, C. beticola, C. cf. flagellaris and Cercospora sp. G. The C. apii s. lat. isolates are distributed over three clades, namely C. apii s. str., C. plantaginis and C. uwebrauniana sp. nov. The C. armoraciae s. lat. isolates are distributed over two clades, C. armoraciae s. str. and C. bizzozeriana. The C. beticola s. lat. isolates are distributed over two clades, namely C. beticola s. str. and C. gamsiana, which is newly described.
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Affiliation(s)
- Mounes Bakhshi
- Department of Botany, Iranian Research Institute of Plant Protection, P.O. Box 19395-1454, Agricultural Research, Education and Extension Organization (AREEO), Tehran, Iran
| | - Mahdi Arzanlou
- Plant Protection Department, Faculty of Agriculture, University of Tabriz, P.O. Box 5166614766, Tabriz, Iran
| | - Asadollah Babai-Ahari
- Plant Protection Department, Faculty of Agriculture, University of Tabriz, P.O. Box 5166614766, Tabriz, Iran
| | - Johannes Z Groenewald
- Westerdijk Fungal Biodiversity Institute, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands
| | - Pedro W Crous
- Westerdijk Fungal Biodiversity Institute, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands
- Department of Genetics, Biochemistry and Microbiology, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria, 0002, South Africa
- Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands
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Zeng XY, Hongsanan S, Hyde KD, Putarak C, Wen TC. Translucidithyrium thailandicum gen. et sp. nov.: a new genus in Phaeothecoidiellaceae. Mycol Prog 2018. [DOI: 10.1007/s11557-018-1419-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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Bandara HMHN, Panduwawala CP, Samaranayake LP. Biodiversity of the human oral mycobiome in health and disease. Oral Dis 2018; 25:363-371. [PMID: 29786923 DOI: 10.1111/odi.12899] [Citation(s) in RCA: 44] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2018] [Revised: 05/14/2018] [Accepted: 05/15/2018] [Indexed: 01/01/2023]
Abstract
The organisms that colonize the human body over a lifetime are diverse, extensive and gargantuan. A fair proportion of the microbiota that constitutes this human microbiome live within our oral cavities mostly as harmonious associates causing only sporadic disease. An important core constituent of the microbiome is the mycobiome, representing various fungal genera. Up until recently, only a few species of fungi, mainly Candida species, were thought to constitute the human oral mycobiome. The reasons for this are manifold, although the uncultivable nature of many fungi in conventional laboratory media, and their complex genetic composition seem to be the major factors which eluded their detection over the years. Nevertheless, recent advances in computing and high-throughput sequencing such as next-generation sequencing (NGS) platforms have provided us a panoramic view of a totally new world of fungi that are human oral cohabitués. Their diversity is perplexing, and functionality yet to be deciphered. Here, we provide a glimpse of what is currently known of the oral mycobiome, in health and disease, with some future perspectives.
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Affiliation(s)
| | - Chamila P Panduwawala
- Department of Oral and Craniofacial Health Sciences, College of Dental Medicine, University of Sharjah, Sharjah, UAE
| | - Lakshman Perera Samaranayake
- Department of Oral and Craniofacial Health Sciences, College of Dental Medicine, University of Sharjah, Sharjah, UAE
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125
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Lücking R, Hawksworth DL. Formal description of sequence-based voucherless Fungi: promises and pitfalls, and how to resolve them. IMA Fungus 2018; 9:143-166. [PMID: 30018876 PMCID: PMC6048566 DOI: 10.5598/imafungus.2018.09.01.09] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2017] [Accepted: 05/15/2018] [Indexed: 11/25/2022] Open
Abstract
There is urgent need for a formal nomenclature of sequence-based, voucherless Fungi, given that environmental sequencing has accumulated more than one billion fungal ITS reads in the Sequence Read Archive, about 1,000 times as many as fungal ITS sequences in GenBank. These unnamed Fungi could help to bridge the gap between 115,000 to 140,000 currently accepted and 2.2 to 3.8 million predicted species, a gap that cannot realistically be filled using specimen or culture-based inventories. The Code never aimed at placing restrictions on the nature of characters chosen for taxonomy, and the requirement for physical types is now becoming a constraint on the advancement of science. We elaborate on the promises and pitfalls of sequence-based nomenclature and provide potential solutions to major concerns of the mycological community. Types of sequence-based taxa, which by default lack a physical specimen or culture, could be designated in four alternative ways: (1) the underlying sample ('bag' type), (2) the DNA extract, (3) fluorescent in situ hybridization (FISH), or (4) the type sequence itself. Only (4) would require changes to the Code and the latter would be the most straightforward approach, complying with three of the five principal functions of types better than physical specimens. A fifth way, representation of the sequence in an illustration, has been ruled as unacceptable in the Code. Potential flaws in sequence data are analogous to flaws in physical types, and artifacts are manageable if a stringent analytical approach is applied. Conceptual errors such as homoplasy, intragenomic variation, gene duplication, hybridization, and horizontal gene transfer, apply to all molecular approaches and cannot be used as a specific argument against sequence-based nomenclature. The potential impact of these phenomena is manageable, as phylogenetic species delimitation has worked satisfactorily in Fungi. The most serious shortcoming of sequence-based nomenclature is the likelihood of parallel classifications, either by describing taxa that already have names based on physical types, or by using different markers to delimit species within the same lineage. The probability of inadvertently establishing sequence-based species that have names available is between 20.4 % and 1.5 % depending on the number of globally predicted fungal species. This compares favourably to a historical error rate of about 30 % based on physical types, and this rate could be reduced to practically zero by adding specific provisions to this approach in the Code. To avoid parallel classifications based on different markers, sequence-based nomenclature should be limited to a single marker, preferably the fungal ITS barcoding marker; this is possible since sequence-based nomenclature does not aim at accurate species delimitation but at naming lineages to generate a reference database, independent of whether these lineages represent species, closely related species complexes, or infraspecies. We argue that clustering methods are inappropriate for sequence-based nomenclature; this approach must instead use phylogenetic methods based on multiple alignments, combined with quantitative species recognition methods. We outline strategies to obtain higher-level phylogenies for ITS-based, voucherless species, including phylogenetic binning, 'hijacking' species delimitation methods, and temporal banding. We conclude that voucherless, sequence-based nomenclature is not a threat to specimen and culture-based fungal taxonomy, but a complementary approach capable of substantially closing the gap between known and predicted fungal diversity, an approach that requires careful work and high skill levels.
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Affiliation(s)
- Robert Lücking
- Botanischer Garten und Botanisches Museum, Freie Universität Berlin, Königin-Luise-Strasse 6–8, 14195 Berlin, Germany
| | - David L. Hawksworth
- Department of Life Sciences, The Natural History Museum, Cromwell Road, London SW7 5BD, UK; and Comparative Plant and Fungal Biology, Royal Botanic Gardens, Kew, Surrey TW9 3DS, UK; Jilin Agricultural University, Changchun, Jilin Province,130118 China
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126
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Tsang CC, Tang JY, Lau SK, Woo PC. Taxonomy and evolution of Aspergillus, Penicillium and Talaromyces in the omics era - Past, present and future. Comput Struct Biotechnol J 2018; 16:197-210. [PMID: 30002790 PMCID: PMC6039702 DOI: 10.1016/j.csbj.2018.05.003] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2017] [Revised: 03/12/2018] [Accepted: 05/23/2018] [Indexed: 11/19/2022] Open
Abstract
Aspergillus, Penicillium and Talaromyces are diverse, phenotypically polythetic genera encompassing species important to the environment, economy, biotechnology and medicine, causing significant social impacts. Taxonomic studies on these fungi are essential since they could provide invaluable information on their evolutionary relationships and define criteria for species recognition. With the advancement of various biological, biochemical and computational technologies, different approaches have been adopted for the taxonomy of Aspergillus, Penicillium and Talaromyces; for example, from traditional morphotyping, phenotyping to chemotyping (e.g. lipotyping, proteotypingand metabolotyping) and then mitogenotyping and/or phylotyping. Since different taxonomic approaches focus on different sets of characters of the organisms, various classification and identification schemes would result. In view of this, the consolidated species concept, which takes into account different types of characters, is recently accepted for taxonomic purposes and, together with the lately implemented 'One Fungus - One Name' policy, is expected to bring a more stable taxonomy for Aspergillus, Penicillium and Talaromyces, which could facilitate their evolutionary studies. The most significant taxonomic change for the three genera was the transfer of Penicillium subgenus Biverticillium to Talaromyces (e.g. the medically important thermally dimorphic 'P. marneffei' endemic in Southeast Asia is now named T. marneffei), leaving both Penicillium and Talaromyces as monophyletic genera. Several distantly related Aspergillus-like fungi were also segregated from Aspergillus, making this genus, containing members of both sexual and asexual morphs, monophyletic as well. In the current omics era, application of various state-of-the-art omics technologies is likely to provide comprehensive information on the evolution of Aspergillus, Penicillium and Talaromyces and a stable taxonomy will hopefully be achieved.
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Affiliation(s)
- Chi-Ching Tsang
- Department of Microbiology, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong
| | - James Y.M. Tang
- Department of Microbiology, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong
| | - Susanna K.P. Lau
- Department of Microbiology, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong
- Research Centre of Infection and Immunology, The University of Hong Kong, Hong Kong
- State Key Laboratory of Emerging Infectious Diseases, The University of Hong Kong, Hong Kong
- Carol Yu Centre for Infection, The University of Hong Kong, Hong Kong
- Collaborative Innovation Centre for Diagnosis and Treatment of Infectious Diseases, The University of Hong Kong, Hong Kong
| | - Patrick C.Y. Woo
- Department of Microbiology, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong
- Research Centre of Infection and Immunology, The University of Hong Kong, Hong Kong
- State Key Laboratory of Emerging Infectious Diseases, The University of Hong Kong, Hong Kong
- Carol Yu Centre for Infection, The University of Hong Kong, Hong Kong
- Collaborative Innovation Centre for Diagnosis and Treatment of Infectious Diseases, The University of Hong Kong, Hong Kong
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127
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Ziegler R, Lutz M, Piątek J, Piątek M. Dismantling a complex of anther smuts (Microbotryum) on carnivorous plants in the genus Pinguicula. Mycologia 2018; 110:361-374. [PMID: 29792777 DOI: 10.1080/00275514.2018.1451697] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Abstract
The anther smuts of the genus Microbotryum are known from host plant species belonging to the Caryophyllaceae, Dipsacaceae, Lamiaceae, Lentibulariaceae, Montiaceae, and Primulaceae. Of these, the anther smuts on Caryophyllaceae, in particular on Silene spp., are best known because they include model organisms studied in many disciplines of fungal biology. For Microbotryum species parasitic on Caryophyllaceae, a high degree of host specificity was revealed and several cryptic species were described. In contrast, the host specificity within Microbotryum pinguiculae occurring in anthers of different Pinguicula species (Lentibulariaceae) has not been investigated in detail until now. The anther smuts on Pinguicula alpina, P. villosa, and P. vulgaris, on which M. pinguiculae was described, were analyzed using nuc rDNA ITS1-5.8S-ITS2 and nuc rDNA 28S D1-D2 sequences and morphology to determine if they belong to one polyphagous species or rather represent three host-specific species. The results of the morphological investigations revealed no decisive differences between the anther smuts on different Pinguicula species. However, genetic divergence and molecular phylogenetic analyses, which split the specimens according to host plant species, supported host specificity of the anther smuts on different Pinguicula species. Accordingly, in addition to Microbotryum pinguiculae s. str. on Pinguicula vulgaris, M. alpinum sp. nov. on P. alpina from Europe and M. liroi sp. nov. on P. villosa from Asia are described and illustrated.
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Affiliation(s)
- Rebekka Ziegler
- a Plant Evolutionary Ecology , Institute of Evolution and Ecology, University of Tübingen , Auf der Morgenstelle 5, D-72076 Tübingen , Germany
| | - Matthias Lutz
- a Plant Evolutionary Ecology , Institute of Evolution and Ecology, University of Tübingen , Auf der Morgenstelle 5, D-72076 Tübingen , Germany
| | - Jolanta Piątek
- b Department of Phycology , W. Szafer Institute of Botany, Polish Academy of Sciences , Lubicz 46, PL-31-512 Kraków , Poland
| | - Marcin Piątek
- c Department of Mycology , W. Szafer Institute of Botany, Polish Academy of Sciences , Lubicz 46, PL-31-512 Kraków , Poland
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128
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Abstract
The question of how many species of Fungi there are has occasioned much speculation, with figures mostly posited from around half a million to 10 million, and in one extreme case even a sizable portion of the spectacular number of 1 trillion. Here we examine new evidence from various sources to derive an updated estimate of global fungal diversity. The rates and patterns in the description of new species from the 1750s show no sign of approaching an asymptote and even accelerated in the 2010s after the advent of molecular approaches to species delimitation. Species recognition studies of (semi-)cryptic species hidden in morpho-species complexes suggest a weighted average ratio of about an order of magnitude for the number of species recognized after and before such studies. New evidence also comes from extrapolations of plant:fungus ratios, with information now being generated from environmental sequence studies, including comparisons of molecular and fieldwork data from the same sites. We further draw attention to undescribed species awaiting discovery in biodiversity hot spots in the tropics, little-explored habitats (such as lichen-inhabiting fungi), and material in collections awaiting study. We conclude that the commonly cited estimate of 1.5 million species is conservative and that the actual range is properly estimated at 2.2 to 3.8 million. With 120,000 currently accepted species, it appears that at best just 8%, and in the worst case scenario just 3%, are named so far. Improved estimates hinge particularly on reliable statistical and phylogenetic approaches to analyze the rapidly increasing amount of environmental sequence data.
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129
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Řehulka J, Kubátová A, Hubka V. Swim bladder mycosis in pretty tetra (Hemigrammus pulcher) caused by Exophiala pisciphila and Phaeophleospora hymenocallidicola, and experimental verification of pathogenicity. JOURNAL OF FISH DISEASES 2018; 41:487-500. [PMID: 29159880 DOI: 10.1111/jfd.12750] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/13/2017] [Revised: 09/18/2017] [Accepted: 09/26/2017] [Indexed: 06/07/2023]
Abstract
Spontaneous invasive and chronic disseminated mycosis affected Hemigrammus pulcher kept in a public aquarium, and infection was manifested by inappetence, exophthalmia, erratic swimming, eroded scales, anaemia of the gills and abdominal distension. Internally, there was a grossly swollen swim bladder with a thickened wall filled with a dark mass. The body cavities contained a clear, light amber fluid and a swollen intestine which was full of a watery fluid containing small gas bubbles. Histopathology revealed a granulomatous inflammatory response with fungal hyphae in the lumen and wall of the swim bladder, hepatopancreas, spleen and kidneys with signs of nephrohydrosis. Exophiala pisciphila and Phaeophleospora hymenocallidicola were isolated from the swim bladder, abdominal cavity and gastrointestinal tract. The exogenous source of infection was probably the ample wooden decoration and plants inside the aquarium. Koch's postulates were fulfilled by re-isolation of both fungal species from fish artificially infected under laboratory conditions. As P. hymenocallidicola is less capable of defence against phagocytosis, E. pisciphila probably played a major role. Severe clinical manifestations with 100% mortality developed in two fish species infected by E. pisciphila. A significant increase in the plasma levels of amino acids was observed as a result of the activation of proteolysis.
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Affiliation(s)
- J Řehulka
- Department of Zoology, Silesian Museum, Opava, Czech Republic
| | - A Kubátová
- Faculty of Science, Department of Botany, Charles University, Prague, Czech Republic
| | - V Hubka
- Faculty of Science, Department of Botany, Charles University, Prague, Czech Republic
- Laboratory of Fungal Genetics and Metabolism, Institute of Microbiology of the Academy of Sciences of the Czech Republic, Prague, Czech Republic
- First Faculty of Medicine, Charles University, Prague, Czech Republic
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130
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Fungal species and their boundaries matter – Definitions, mechanisms and practical implications. FUNGAL BIOL REV 2018. [DOI: 10.1016/j.fbr.2017.11.002] [Citation(s) in RCA: 42] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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131
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Delgado G, Miller AN, Piepenbring M. South Florida microfungi: Castanedospora, a new genus to accommodate Sporidesmium pachyanthicola(Capnodiales, Ascomycota). CRYPTOGAMIE MYCOL 2018. [DOI: 10.7872/crym/v39.iss1.2018.109] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Gregorio Delgado
- EMLab P&K Houston, 10900 Brittmoore Park Drive Suite G, Houston, TX 77041, USA
- Department of Mycology, Institute of Ecology, Evolution and Diversity, Goethe Universität Frankfurt, Max-von-Laue-Str. 13, 60438 Frankfurt am Main, Germany
| | - Andrew N. Miller
- Illinois Natural History Survey, University of Illinois, 1816 South Oak Street, Champaign, IL 61820, USA
| | - Meike Piepenbring
- Department of Mycology, Institute of Ecology, Evolution and Diversity, Goethe Universität Frankfurt, Max-von-Laue-Str. 13, 60438 Frankfurt am Main, Germany
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132
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Wang MM, Shenoy BD, Li W, Cai L. Molecular phylogeny of Neodevriesia, with two new species and several new combinations. Mycologia 2018; 109:965-974. [DOI: 10.1080/00275514.2017.1415075] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- Meng-Meng Wang
- College of Marine Life Sciences, Ocean University of China, Qingdao 266003, China
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China
| | - Belle Damodara Shenoy
- CSIR-National Institute of Oceanography Regional Centre, No. 176, Lawsons Bay Colony, Visakhapatnam, 530017, India
| | - Wei Li
- College of Marine Life Sciences, Ocean University of China, Qingdao 266003, China
| | - Lei Cai
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China
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133
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Savi DC, Shaaban KA, Gos FMWR, Ponomareva LV, Thorson JS, Glienke C, Rohr J. Phaeophleospora vochysiae Savi & Glienke sp. nov. Isolated from Vochysia divergens Found in the Pantanal, Brazil, Produces Bioactive Secondary Metabolites. Sci Rep 2018; 8:3122. [PMID: 29449610 PMCID: PMC5814415 DOI: 10.1038/s41598-018-21400-2] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2017] [Accepted: 01/29/2018] [Indexed: 11/09/2022] Open
Abstract
Microorganisms associated with plants are highly diverse and can produce a large number of secondary metabolites, with antimicrobial, anti-parasitic and cytotoxic activities. We are particularly interested in exploring endophytes from medicinal plants found in the Pantanal, a unique and widely unexplored wetland in Brazil. In a bio-prospecting study, strains LGMF1213 and LGMF1215 were isolated as endophytes from Vochysia divergens, and by morphological and molecular phylogenetic analyses were characterized as Phaeophleospora vochysiae sp. nov. The chemical assessment of this species reveals three major compounds with high biological activity, cercoscosporin (1), isocercosporin (2) and the new compound 3-(sec-butyl)-6-ethyl-4,5-dihydroxy-2-methoxy-6-methylcyclohex-2-enone (3). Besides the isolation of P. vochysiae as endophyte, the production of cercosporin compounds suggest that under specific conditions this species causes leaf spots, and may turn into a pathogen, since leaf spots are commonly caused by species of Cercospora that produce related compounds. In addition, the new compound 3-(sec-butyl)-6-ethyl-4,5-dihydroxy-2-methoxy-6-methylcyclohex-2-enone showed considerable antimicrobial activity and low cytotoxicity, which needs further exploration.
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Affiliation(s)
- Daiani C Savi
- Department of Genetics, Universidade Federal do Parana, Av. Coronel Francisco Heráclito dos Santos, 210. CEP, 81531-970, Curitiba, PR, Brazil.,Department of Pharmaceutical Sciences, College of Pharmacy, University of Kentucky, Lexington, Kentucky, 40536-0596, USA
| | - Khaled A Shaaban
- Department of Pharmaceutical Sciences, College of Pharmacy, University of Kentucky, Lexington, Kentucky, 40536-0596, USA.,Center for Pharmaceutical Research and Innovation (CPRI), College of Pharmacy, University of Kentucky, Lexington, Kentucky, 40536-0596, USA
| | - Francielly Maria Wilke Ramos Gos
- Department of Genetics, Universidade Federal do Parana, Av. Coronel Francisco Heráclito dos Santos, 210. CEP, 81531-970, Curitiba, PR, Brazil
| | - Larissa V Ponomareva
- Department of Pharmaceutical Sciences, College of Pharmacy, University of Kentucky, Lexington, Kentucky, 40536-0596, USA.,Center for Pharmaceutical Research and Innovation (CPRI), College of Pharmacy, University of Kentucky, Lexington, Kentucky, 40536-0596, USA
| | - Jon S Thorson
- Department of Pharmaceutical Sciences, College of Pharmacy, University of Kentucky, Lexington, Kentucky, 40536-0596, USA.,Center for Pharmaceutical Research and Innovation (CPRI), College of Pharmacy, University of Kentucky, Lexington, Kentucky, 40536-0596, USA
| | - Chirlei Glienke
- Department of Genetics, Universidade Federal do Parana, Av. Coronel Francisco Heráclito dos Santos, 210. CEP, 81531-970, Curitiba, PR, Brazil.
| | - Jürgen Rohr
- Department of Pharmaceutical Sciences, College of Pharmacy, University of Kentucky, Lexington, Kentucky, 40536-0596, USA.
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134
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Cryptic diversity, pathogenicity, and evolutionary species boundaries in Cercospora populations associated with Cercospora leaf spot of Beta vulgaris. Fungal Biol 2018; 122:264-282. [PMID: 29551200 DOI: 10.1016/j.funbio.2018.01.008] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2017] [Revised: 01/18/2018] [Accepted: 01/31/2018] [Indexed: 12/16/2022]
Abstract
The taxonomy and evolutionary species boundaries in a global collection of Cercospora isolates from Beta vulgaris was investigated based on sequences of six loci. Species boundaries were assessed using concatenated multi-locus phylogenies, Generalized Mixed Yule Coalescent (GMYC), Poisson Tree Processes (PTP), and Bayes factor delimitation (BFD) framework. Cercospora beticola was confirmed as the primary cause of Cercospora leaf spot (CLS) on B. vulgaris. Cercospora apii, C. cf. flagellaris, Cercospora sp. G, and C. zebrina were also identified in association with CLS on B. vulgaris. Cercospora apii and C. cf. flagellaris were pathogenic to table beet but Cercospora sp. G and C. zebrina did not cause disease. Genealogical concordance phylogenetic species recognition, GMYC and PTP methods failed to differentiate C. apii and C. beticola as separate species. On the other hand, multi-species coalescent analysis based on BFD supported separation of C. apii and C. beticola into distinct species; and provided evidence of evolutionary independent lineages within C. beticola. Extensive intra- and intergenic recombination, incomplete lineage sorting and dominance of clonal reproduction complicate evolutionary species recognition in the genus Cercospora. The results warrant morphological and phylogenetic studies to disentangle cryptic speciation within C. beticola.
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135
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Aguilera-Cogley VA, Berbegal M, Català S, Brentu FC, Armengol J, Vicent A. Characterization of Mycosphaerellaceae species associated with citrus greasy spot in Panama and Spain. PLoS One 2017; 12:e0189585. [PMID: 29236789 PMCID: PMC5728561 DOI: 10.1371/journal.pone.0189585] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2017] [Accepted: 11/29/2017] [Indexed: 11/19/2022] Open
Abstract
Greasy spot of citrus, caused by Zasmidium citri-griseum (= Mycosphaerella citri), is widely distributed in the Caribbean Basin, inducing leaf spots, premature defoliation, and yield loss. Greasy spot-like symptoms were frequently observed in humid citrus-growing regions in Panama as well as in semi-arid areas in Spain, but disease aetiology was unknown. Citrus-growing areas in Panama and Spain were surveyed and isolates of Mycosphaerellaceae were obtained from citrus greasy spot lesions. A selection of isolates from Panama (n = 22) and Spain (n = 16) was assembled based on their geographical origin, citrus species, and affected tissue. The isolates were characterized based on multi-locus DNA (ITS and EF-1α) sequence analyses, morphology, growth at different temperatures, and independent pathogenicity tests on the citrus species most affected in each country. Reference isolates and sequences were also included in the analysis. Isolates from Panama were identified as Z. citri-griseum complex, and others from Spain attributed to Amycosphaerella africana. Isolates of the Z. citri-griseum complex had a significantly higher optimal growth temperature (26.8°C) than those of A. africana (19.3°C), which corresponded well with their actual biogeographical range. The isolates of the Z. citri-griseum complex from Panama induced typical greasy spot symptoms in 'Valencia' sweet orange plants and the inoculated fungi were reisolated. No symptoms were observed in plants of the 'Ortanique' tangor inoculated with A. africana. These results demonstrate the presence of citrus greasy spot, caused by Z. citri-griseum complex, in Panama whereas A. africana was associated with greasy spot-like symptoms in Spain.
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Affiliation(s)
- Vidal Antonio Aguilera-Cogley
- Laboratorio de Protección Vegetal, Centro de Investigación Agropecuaria Central, Instituto de Investigación Agropecuaria de Panamá (IDIAP), Herrera, Panamá
| | - Mónica Berbegal
- Instituto Agroforestal Mediterráneo, Universitat Politècnica de València, Valencia, Spain
| | - Santiago Català
- Instituto Agroforestal Mediterráneo, Universitat Politècnica de València, Valencia, Spain
| | - Francis Collison Brentu
- Forest and Horticultural Crops Research Centre-Kade, School of Agriculture, College of Basic and Applied Sciences, University of Ghana, Legon, Accra, Ghana
| | - Josep Armengol
- Instituto Agroforestal Mediterráneo, Universitat Politècnica de València, Valencia, Spain
| | - Antonio Vicent
- Centro de Protección Vegetal y Biotecnología, Instituto Valenciano de Investigaciones Agrarias (IVIA), Moncada, Valencia, Spain
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136
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Chethana KWT, Zhou Y, Zhang W, Liu M, Xing QK, Li XH, Yan JY, Chethana KWT, Hyde KD. Coniella vitis sp. nov. Is the Common Pathogen of White Rot in Chinese Vineyards. PLANT DISEASE 2017; 101:2123-2136. [PMID: 30677388 DOI: 10.1094/pdis-12-16-1741-re] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Grape white rot is a common disease and causes considerable yield losses in many grape-growing regions when environmental conditions are favorable. We surveyed grape white rot in five provinces in China and collected 27 isolates from diseased grape tissues. Multigene phylogenetic analyses of the internal transcribed spacer region (ITS1-5.8S-ITS2), the 28S large subunit of nuclear ribosomal RNA (LSU), partial translation elongation factor 1-alpha gene (TEF 1-α), and partial histone 3 gene (HIS), coupled with genealogical concordance phylogenetic species recognition and morphological observations, revealed that Coniella vitis sp. nov. and C. diplodiella are the causal agents of grape white rot in China. Koch's postulates were performed on Vitis vinifera cv. Summer Black in a greenhouse. These results confirmed the pathogenicity on grapes, as symptoms were reproduced, and also indicated significant variations in the virulence among C. vitis isolates. This work provides evidence that C. vitis is the main pathogen of grape white rot in China and also provides an optimized multigene backbone for resolving Coniella species.
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Affiliation(s)
- K W T Chethana
- Institute of Plant and Environment Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China; Beijing Key Laboratory of Environment Friendly Management on Fruit Diseases and Pests in North China, Beijing 100097, China
| | - Y Zhou
- Institute of Plant and Environment Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China; Beijing Key Laboratory of Environment Friendly Management on Fruit Diseases and Pests in North China, Beijing 100097, China
| | - W Zhang
- Institute of Plant and Environment Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China; Beijing Key Laboratory of Environment Friendly Management on Fruit Diseases and Pests in North China, Beijing 100097, China
| | - M Liu
- Institute of Plant and Environment Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China; Beijing Key Laboratory of Environment Friendly Management on Fruit Diseases and Pests in North China, Beijing 100097, China
| | - Q K Xing
- Institute of Plant and Environment Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China; Beijing Key Laboratory of Environment Friendly Management on Fruit Diseases and Pests in North China, Beijing 100097, China
| | - X H Li
- Institute of Plant and Environment Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China; Beijing Key Laboratory of Environment Friendly Management on Fruit Diseases and Pests in North China, Beijing 100097, China
| | - J Y Yan
- Institute of Plant and Environment Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China; Beijing Key Laboratory of Environment Friendly Management on Fruit Diseases and Pests in North China, Beijing 100097, China
| | - K W T Chethana
- Centre of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - K D Hyde
- Centre of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
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Capitulocladosporium clinodiplosidis gen. et sp. nov., a hyphomyceteous ustilaginomycete from midge. Mycol Prog 2017. [DOI: 10.1007/s11557-017-1352-7] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
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138
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139
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Rooney-Latham S, Lutz M, Blomquist CL, Romberg MK, Scheck HJ, Piątek M. Entyloma helianthi: identification and characterization of the causal agent of sunflower white leaf smut. Mycologia 2017; 109:520-528. [DOI: 10.1080/00275514.2017.1362314] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Suzanne Rooney-Latham
- Plant Pest Diagnostics Center, California Department of Food and Agriculture, Sacramento, California 95832
| | - Matthias Lutz
- Plant Evolutionary Ecology, Institute of Evolution and Ecology, University of Tübingen, Auf der Morgenstelle 5, D-72076 Tübingen, Germany
| | - Cheryl L. Blomquist
- Plant Pest Diagnostics Center, California Department of Food and Agriculture, Sacramento, California 95832
| | - Megan K. Romberg
- National Identification Services, United States Department of Agriculture Animal Plant Health Inspection Service, Beltsville, Maryland 20705
| | - Heather J. Scheck
- California Department of Food and Agriculture, Santa Barbara, California 93110
| | - Marcin Piątek
- Department of Mycology, W. Szafer Institute of Botany, Polish Academy of Sciences, Lubicz 46, PL-31-512 Kraków, Poland
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140
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Symptomatic Citrus trees reveal a new pathogenic lineage in Fusarium and two new Neocosmospora species. Persoonia - Molecular Phylogeny and Evolution of Fungi 2017; 40:1-25. [PMID: 30504994 PMCID: PMC6146640 DOI: 10.3767/persoonia.2018.40.01] [Citation(s) in RCA: 52] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/03/2017] [Accepted: 04/07/2017] [Indexed: 11/25/2022]
Abstract
The diversity of fusaria in symptomatic Citrus trees in Greece, Italy and Spain was evaluated using morphological and molecular multi-locus analyses based on fragments of the calmodulin (CAM), intergenic spacer region of the rDNA (IGS), internal transcribed spacer region of the rDNA (ITS), large subunit of the rDNA (LSU), RNA polymerase largest subunit (RPB1), RNA polymerase second largest subunit (RPB2), translation elongation factor 1-alpha (EF-1α) and beta-tubulin (TUB) genes. A total of 11 species (six Fusarium spp., and five Neocosmospora spp.) were isolated from dry root rot, crown, trunk or twig canker or twig dieback of citrus trees. The most commonly isolated species were Fusarium sarcochroum, F. oxysporum and Neocosmospora solani. Three new Fusarium species are described, i.e., F. citricola and F. salinense belonging to the newly described F. citricola species complex; and F. siculi belonging to the F. fujikuroi species complex. Results of pathogenicity tests showed this new complex to include prominent canker causing agents affecting several Citrus spp. In addition, two new species are described in Neocosmospora, named N. croci and N. macrospora, the latter species being clearly differentiated from most members of this genus by producing large, up to nine-septate sporodochial conidia.
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141
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Jayasiri SC, Hyde KD, Jones EG, Ariyawansae HA, Bahkali AH, Elgorban AM, Kang JC. A New Hysteriform Dothideomycete (Gloniaceae, PleosporomycetidaeIncertae sedis),Purpurepithecium murisporumgen. et sp. nov. on Pine Cone Scales. CRYPTOGAMIE MYCOL 2017. [DOI: 10.7872/crym/v38.iss2.2017.241] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Subashini C. Jayasiri
- Engineering Research Center of Southwest Bio-Pharmaceutical Resources, Ministry of Education, Guizhou University, Guiyang 550025, Guizhou Province, China
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - Kevin D. Hyde
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
- World Agro forestry Centre East and Central Asia Office, 132 Lanhei Road, Kunming 650201, China
| | | | | | - Ali H. Bahkali
- Department of Botany and Microbiology, College of Science, King Saud University, P.O. Box: 2455, Riyadh, 1145, Saudi Arabia
| | - Abdallah M. Elgorban
- Department of Botany and Microbiology, College of Science, King Saud University, P.O. Box: 2455, Riyadh, 1145, Saudi Arabia
| | - Ji-Chuan Kang
- Engineering Research Center of Southwest Bio-Pharmaceutical Resources, Ministry of Education, Guizhou University, Guiyang 550025, Guizhou Province, China
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Crous P, Wingfield M, Burgess T, Hardy G, Barber P, Alvarado P, Barnes C, Buchanan P, Heykoop M, Moreno G, Thangavel R, van der Spuy S, Barili A, Barrett S, Cacciola S, Cano-Lira J, Crane C, Decock C, Gibertoni T, Guarro J, Guevara-Suarez M, Hubka V, Kolařík M, Lira C, Ordoñez M, Padamsee M, Ryvarden L, Soares A, Stchigel A, Sutton D, Vizzini A, Weir B, Acharya K, Aloi F, Baseia I, Blanchette R, Bordallo J, Bratek Z, Butler T, Cano-Canals J, Carlavilla J, Chander J, Cheewangkoon R, Cruz R, da Silva M, Dutta A, Ercole E, Escobio V, Esteve-Raventós F, Flores J, Gené J, Góis J, Haines L, Held B, Jung MH, Hosaka K, Jung T, Jurjević Ž, Kautman V, Kautmanova I, Kiyashko A, Kozanek M, Kubátová A, Lafourcade M, La Spada F, Latha K, Madrid H, Malysheva E, Manimohan P, Manjón J, Martín M, Mata M, Merényi Z, Morte A, Nagy I, Normand AC, Paloi S, Pattison N, Pawłowska J, Pereira O, Petterson M, Picillo B, Raj K, Roberts A, Rodríguez A, Rodríguez-Campo F, Romański M, Ruszkiewicz-Michalska M, Scanu B, Schena L, Semelbauer M, Sharma R, Shouche Y, Silva V, Staniaszek-Kik M, Stielow J, Tapia C, Taylor P, Toome-Heller M, Vabeikhokhei J, van Diepeningen A, Van Hoa N, M. VT, Wiederhold N, Wrzosek M, Zothanzama J, Groenewald J. Fungal Planet description sheets: 558-624. PERSOONIA 2017; 38:240-384. [PMID: 29151634 PMCID: PMC5645186 DOI: 10.3767/003158517x698941] [Citation(s) in RCA: 94] [Impact Index Per Article: 13.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/01/2017] [Accepted: 05/01/2017] [Indexed: 01/20/2023]
Abstract
Novel species of fungi described in this study include those from various countries as follows: Australia: Banksiophoma australiensis (incl. Banksiophoma gen. nov.) on Banksia coccinea, Davidiellomycesaustraliensis (incl. Davidiellomyces gen. nov.) on Cyperaceae, Didymocyrtis banksiae on Banksia sessilis var. cygnorum, Disculoides calophyllae on Corymbia calophylla, Harknessia banksiae on Banksia sessilis, Harknessia banksiae-repens on Banksia repens, Harknessia banksiigena on Banksia sessilis var. cygnorum, Harknessia communis on Podocarpus sp., Harknessia platyphyllae on Eucalyptus platyphylla, Myrtacremonium eucalypti (incl. Myrtacremonium gen. nov.) on Eucalyptus globulus, Myrtapenidiella balenae on Eucalyptus sp., Myrtapenidiella eucalyptigena on Eucalyptus sp., Myrtapenidiella pleurocarpae on Eucalyptuspleurocarpa, Paraconiothyrium hakeae on Hakea sp., Paraphaeosphaeria xanthorrhoeae on Xanthorrhoea sp., Parateratosphaeria stirlingiae on Stirlingia sp., Perthomyces podocarpi (incl. Perthomyces gen. nov.) on Podocarpus sp., Readeriella ellipsoidea on Eucalyptus sp., Rosellinia australiensis on Banksia grandis, Tiarosporella corymbiae on Corymbia calophylla, Verrucoconiothyriumeucalyptigenum on Eucalyptus sp., Zasmidium commune on Xanthorrhoea sp., and Zasmidium podocarpi on Podocarpus sp. Brazil: Cyathus aurantogriseocarpus on decaying wood, Perenniporia brasiliensis on decayed wood, Perenniporia paraguyanensis on decayed wood, and Pseudocercospora leandrae-fragilis on Leandrafragilis.Chile: Phialocephala cladophialophoroides on human toe nail. Costa Rica: Psathyrella striatoannulata from soil. Czech Republic: Myotisia cremea (incl. Myotisia gen. nov.) on bat droppings. Ecuador: Humidicutis dictiocephala from soil, Hygrocybe macrosiparia from soil, Hygrocybe sangayensis from soil, and Polycephalomyces onorei on stem of Etlingera sp. France: Westerdykella centenaria from soil. Hungary: Tuber magentipunctatum from soil. India: Ganoderma mizoramense on decaying wood, Hodophilus indicus from soil, Keratinophyton turgidum in soil, and Russula arunii on Pterigota alata.Italy: Rhodocybe matesina from soil. Malaysia: Apoharknessia eucalyptorum, Harknessia malayensis, Harknessia pellitae, and Peyronellaea eucalypti on Eucalyptus pellita, Lectera capsici on Capsicum annuum, and Wallrothiella gmelinae on Gmelina arborea.Morocco: Neocordana musigena on Musa sp. New Zealand: Candida rongomai-pounamu on agaric mushroom surface, Candida vespimorsuum on cup fungus surface, Cylindrocladiella vitis on Vitis vinifera, Foliocryphia eucalyptorum on Eucalyptus sp., Ramularia vacciniicola on Vaccinium sp., and Rhodotorula ngohengohe on bird feather surface. Poland: Tolypocladium fumosum on a caterpillar case of unidentified Lepidoptera.Russia: Pholiotina longistipitata among moss. Spain: Coprinopsis pseudomarcescibilis from soil, Eremiomyces innocentii from soil, Gyroporus pseudocyanescens in humus, Inocybe parvicystis in humus, and Penicillium parvofructum from soil. Unknown origin: Paraphoma rhaphiolepidis on Rhaphiolepsis indica.USA: Acidiella americana from wall of a cooling tower, Neodactylaria obpyriformis (incl. Neodactylaria gen. nov.) from human bronchoalveolar lavage, and Saksenaea loutrophoriformis from human eye. Vietnam: Phytophthora mekongensis from Citrus grandis, and Phytophthora prodigiosa from Citrus grandis. Morphological and culture characteristics along with DNA barcodes are provided.
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Affiliation(s)
- P.W. Crous
- Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD Utrecht, The Netherlands
| | - M.J. Wingfield
- Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria 0002, South Africa
| | - T.I. Burgess
- Centre for Phytophthora Science and Management, Murdoch University, 90 South Street, Murdoch, WA 6150, Australia
| | - G.E.St.J. Hardy
- Centre for Phytophthora Science and Management, Murdoch University, 90 South Street, Murdoch, WA 6150, Australia
| | - P.A. Barber
- ArborCarbon, P.O. Box 1065, Willagee Central, WA 6156, Australia; 1 City Farm Place, East Perth, Western Australia, 6004 Australia
| | - P. Alvarado
- ALVALAB, C/ La Rochela nº 47, E-39012 Santander, Spain
| | - C.W. Barnes
- Instituto Nacional de Investigaciones Agropecuarias, Estación Experimental Santa Catalina, Panamericana Sur Km1, Sector Cutuglahua, Pichincha, Ecuador
| | - P.K. Buchanan
- Landcare Research, Private Bag 92170, Auckland 1142, New Zealand
| | - M. Heykoop
- Departamento de Ciencias de la Vida (Área de Botánica), Universidad de Alcalá, E-28805 Alcalá de Henares, Madrid, Spain
| | - G. Moreno
- Departamento de Ciencias de la Vida (Área de Botánica), Universidad de Alcalá, E-28805 Alcalá de Henares, Madrid, Spain
| | - R. Thangavel
- Plant Health and Environment Laboratory, Ministry for Primary Industries, P.O. Box 2095, Auckland 1140, New Zealand
| | - S. van der Spuy
- Macleans College, 2 Macleans Rd, Bucklands Beach, Auckland 2014, New Zealand
| | - A. Barili
- Escuela de Ciencias Biológicas, Pontificia Universidad Católica del Ecuador, Av. 12 de octubre 1076 y Roca, Quito, Ecuador
| | - S. Barrett
- Department of Parks and Wildlife Albany District, 120 Albany Highway, Albany, WA 6330, Australia
| | - S.O. Cacciola
- Department of Agriculture, Food and Environment (Di3A), University of Catania, Via Santa Sofia 100, 95123 Catania, Italy
| | - J.F. Cano-Lira
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili (URV), Sant Llorenç 21, 43201 Reus, Tarragona, Spain
| | - C. Crane
- Department of Parks and Wildlife, Vegetation Health Service, Locked Bag 104, Bentley Delivery Centre, Bentley, WA 6983, Australia
| | - C. Decock
- Mycothèque de l’Université catholique de Louvain (MUCL, BCCMTM), Earth and Life Institute – Microbiology (ELIM), Université catholique de Louvain, Croix du Sud 2 bte L7.05.06, B-1348, Louvain-la-Neuve, Belgium
| | - T.B. Gibertoni
- Departamento de Micologia Prof. Chaves Batista, Universidade Federal de Pernambuco, Recife, Brazil
| | - J. Guarro
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili (URV), Sant Llorenç 21, 43201 Reus, Tarragona, Spain
| | - M. Guevara-Suarez
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili (URV), Sant Llorenç 21, 43201 Reus, Tarragona, Spain
| | - V. Hubka
- Department of Botany, Faculty of Science, Charles University, Benátská 2, 128 01 Prague 2, Czech Republic
| | - M. Kolařík
- Laboratory of Fungal Genetics and Metabolism, Institute of Microbiology of the CAS, v.v.i, Vídeňská 1083, 142 20 Prague 4, Czech Republic
| | - C.R.S. Lira
- Departamento de Micologia Prof. Chaves Batista, Universidade Federal de Pernambuco, Recife, Brazil
| | - M.E. Ordoñez
- Escuela de Ciencias Biológicas, Pontificia Universidad Católica del Ecuador, Av. 12 de octubre 1076 y Roca, Quito, Ecuador
| | - M. Padamsee
- Landcare Research, Private Bag 92170, Auckland 1142, New Zealand
| | - L. Ryvarden
- University of Oslo, Institute of Biological Sciences, P.O. Box 1066, Blindern, N-0316, Oslo, Norway
| | - A.M. Soares
- Departamento de Micologia Prof. Chaves Batista, Universidade Federal de Pernambuco, Recife, Brazil
| | - A.M. Stchigel
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili (URV), Sant Llorenç 21, 43201 Reus, Tarragona, Spain
| | - D.A. Sutton
- Fungus Testing Laboratory, Department of Pathology, University of Texas Health Science Center, San Antonio, Texas, USA
| | - A. Vizzini
- Department of Life Sciences and Systems Biology, University of Torino, Viale P.A. Mattioli 25, I-10125 Torino, Italy; Institute for Sustainable Plant Protection (IPSP)-CNR, Viale P.A. Mattioli 25, I-10125 Torino, Italy
| | - B.S. Weir
- Landcare Research, Private Bag 92170, Auckland 1142, New Zealand
| | - K. Acharya
- Molecular and Applied Mycology and Plant Pathology Laboratory, Department of Botany, University of Calcutta, 35, Ballygunge Circular Road, Kolkata-700019, West Bengal, India
| | - F. Aloi
- Department of Agriculture, Food and Environment (Di3A), University of Catania, Via Santa Sofia 100, 95123 Catania, Italy
| | - I.G. Baseia
- Departamento de Botânica e Zoologia, Universidade Federal do Rio Grande do Norte, Natal, Rio Grande do Norte, Brazil
| | - R.A. Blanchette
- University of Minnesota, 495 Borlaug Hall, 1991 Upper Buford Circle, St. Paul, MN 55108, USA
| | - J.J. Bordallo
- Departamento de Biología Vegetal (Botánica), Facultad de Biología, Universidad de Murcia, 30100 Murcia, Spain
| | - Z. Bratek
- Department of Plant Physiology and Molecular Plant Biology, Eötvös Loránd University, Pázmány Péter lane 1/C, Budapest H-1117, Hungary
| | - T. Butler
- Te Kura Kaupapa Māori o Kaikohe, 20 Hongi Street, Kaikohe 0405, New Zealand
| | - J. Cano-Canals
- Te Kura Kaupapa Māori o Kaikohe, 20 Hongi Street, Kaikohe 0405, New Zealand
| | - J.R. Carlavilla
- Departamento de Ciencias de la Vida (Área de Botánica), Universidad de Alcalá, E-28805 Alcalá de Henares, Madrid, Spain
| | - J. Chander
- Department of Microbiology, Government Medical College Hospital, 32B, Sector 32, Chandigarh, 160030, India
| | - R. Cheewangkoon
- Department of Entomology and Plant Pathology, Faculty of Agriculture, Chiang Mai University, Chiang Mai 50200, Thailand
| | - R.H.S.F. Cruz
- Programa de Pós-graduação em Sistemática e Evolução, Dept. Botânica e Zoologia, Centro de Biociências, Universidade Federal do Rio Grande do Norte, Natal, 59078-970, Brazil
| | - M. da Silva
- Universidade Federal de Viçosa, Minas Gerais, Brazil
| | - A.K. Dutta
- Molecular and Applied Mycology and Plant Pathology Laboratory, Department of Botany, University of Calcutta, 35, Ballygunge Circular Road, Kolkata-700019, West Bengal, India
| | - E. Ercole
- Department of Life Sciences and Systems Biology, University of Turin, I-10125 Turin, Italy
| | - V. Escobio
- Sociedad Micológica de Gran Canaria, Apartado 609, 35080 Las Palmas de Gran Canaria, Spain
| | - F. Esteve-Raventós
- Departamento de Ciencias de la Vida (Área de Botánica), Universidad de Alcalá, E-28805 Alcalá de Henares, Madrid, Spain
| | - J.A. Flores
- Escuela de Ciencias Biológicas, Pontificia Universidad Católica del Ecuador, Av. 12 de octubre 1076 y Roca, Quito, Ecuador
| | - J. Gené
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili (URV), Sant Llorenç 21, 43201 Reus, Tarragona, Spain
| | - J.S. Góis
- Departamento de Botânica e Zoologia, Universidade Federal do Rio Grande do Norte, Natal, Rio Grande do Norte, Brazil
| | - L. Haines
- Te Kura Kaupapa Māori o Kaikohe, 20 Hongi Street, Kaikohe 0405, New Zealand
| | - B.W. Held
- University of Minnesota, 495 Borlaug Hall, 1991 Upper Buford Circle, St. Paul, MN 55108, USA
| | - M. Horta Jung
- Phytophthora Research Center, Mendel University, Zemedelska 1, 613 00 Brno, Czech Republic; Phytophthora Research and Consultancy, Am Rain 9, 83131 Nußdorf, Germany
| | - K. Hosaka
- Department of Botany, National Museum of Nature and Science-TNS, 4-1-1 Amakubo, Tsukuba, Ibaraki, 305-0005, Japan
| | - T. Jung
- Phytophthora Research Center, Mendel University, Zemedelska 1, 613 00 Brno, Czech Republic; Phytophthora Research and Consultancy, Am Rain 9, 83131 Nußdorf, Germany
| | - Ž. Jurjević
- EMSL Analytical, Inc., 200 Route 130 North, Cinnaminson, NJ 08077, USA
| | | | - I. Kautmanova
- Slovak National Museum-Natural History Museum, Vajanskeho nab. 2, P.O. Box 13, 81006 Bratislava, Slovakia
| | - A.A. Kiyashko
- Komarov Botanical Institute of the Russian Academy of Sciences, Saint Petersburg, Russia
| | - M. Kozanek
- Scientica, Ltd., Hybesova 33, 83106 Bratislava, Slovakia
| | - A. Kubátová
- Department of Botany, Faculty of Science, Charles University, Benátská 2, 128 01 Prague 2, Czech Republic
| | - M. Lafourcade
- Laboratorio Clínico, Clínica Santa María, Santiago, Chile
| | - F. La Spada
- Department of Agriculture, Food and Environment (Di3A), University of Catania, Via Santa Sofia 100, 95123 Catania, Italy
| | - K.P.D. Latha
- Department of Botany, University of Calicut, Kerala, 673 635, India
| | - H. Madrid
- Centro de Genómica y Bioinformática, Facultad de Ciencias, Universidad Mayor de Chile, Camino La Pirámide 5750, Huechuraba, Santiago, Chile
| | - E.F. Malysheva
- Komarov Botanical Institute of the Russian Academy of Sciences, Saint Petersburg, Russia
| | - P. Manimohan
- Department of Botany, University of Calicut, Kerala, 673 635, India
| | - J.L. Manjón
- Departamento de Ciencias de la Vida (Área de Botánica), Universidad de Alcalá, E-28805 Alcalá de Henares, Madrid, Spain
| | - M.P. Martín
- Departamento de Micología, Real Jardín Botánico-CSIC, Plaza de Murillo 2, 28014 Madrid, Spain
| | - M. Mata
- Escuela de Biología, Universidad de Costa Rica, Sede Central, San Pedro de Montes Oca. San José, Costa Rica
| | - Z. Merényi
- Department of Plant Physiology and Molecular Plant Biology, Eötvös Loránd University, Pázmány Péter lane 1/C, Budapest H-1117, Hungary
| | - A. Morte
- Departamento de Biología Vegetal (Botánica), Facultad de Biología, Universidad de Murcia, 30100 Murcia, Spain
| | - I. Nagy
- Department of Plant Physiology and Molecular Plant Biology, Eötvös Loránd University, Pázmány Péter lane 1/C, Budapest H-1117, Hungary
| | - A.-C. Normand
- Département de Parasitologie/Mycologie La Timone, Marseille, France
| | - S. Paloi
- Molecular and Applied Mycology and Plant Pathology Laboratory, Department of Botany, University of Calcutta, 35, Ballygunge Circular Road, Kolkata-700019, West Bengal, India
| | - N. Pattison
- Rongomai School, 20 Rongomai Rd, Otara, Auckland 2023, New Zealand
| | - J. Pawłowska
- Department of Molecular Phylogenetics and Evolution, University of Warsaw, Żwirki and Wigury 101, PL-02-089 Warsaw, Poland
| | - O.L. Pereira
- Universidade Federal de Viçosa, Minas Gerais, Brazil
| | - M.E. Petterson
- Landcare Research, Private Bag 92170, Auckland 1142, New Zealand
| | - B. Picillo
- Via Roma 139, I-81017 Sant’ Angelo d’ Alife (CE), Italy
| | - K.N.A. Raj
- Department of Botany, University of Calicut, Kerala, 673 635, India
| | - A. Roberts
- Karamu High School, Windsor Ave, Parkvale, Hastings 4122, New Zealand
| | - A. Rodríguez
- Departamento de Biología Vegetal (Botánica), Facultad de Biología, Universidad de Murcia, 30100 Murcia, Spain
| | | | - M. Romański
- Wigry National Park, Krzywe 82, PL-16-402 Suwałki, Poland
| | | | - B. Scanu
- Dipartimento di Agraria, University of Sassari, Viale Italia 39, 07100 Sassari, Italy
| | - L. Schena
- Dipartimento di Agraria, Mediterranean University of Reggio Calabria, Feo di Vito, 89122 Reggio Calabria, Italy
| | - M. Semelbauer
- Institute of Zoology, Slovak Academy of Sciences, Dubravska cesta 9, 84506 Bratislava, Slovakia
| | - R. Sharma
- National Centre for Microbial Resource, National Centre for Cell Science, NCCS Complex SP Pune University Campus, Ganeshkhind, Pune 411007, India
| | - Y.S. Shouche
- National Centre for Microbial Resource, National Centre for Cell Science, NCCS Complex SP Pune University Campus, Ganeshkhind, Pune 411007, India
| | - V. Silva
- Escuela de Tecnología Médica, Facultad de Ciencias, Universidad Mayor de Chile, Santiago, Chile
| | - M. Staniaszek-Kik
- Department of Geobotany and Plant Ecology, University of Łódź, Banacha 12/16, PL-90-237 Łódź, Poland
| | - J.B. Stielow
- Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD Utrecht, The Netherlands
| | - C. Tapia
- Laboratorio de Micología Médica, Programa de Microbiología y Micología, Instituto de Ciencias Biomédicas, Facultad de Medicina, Universidad de Chile, Santiago, Chile
| | - P.W.J. Taylor
- Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Australia
| | - M. Toome-Heller
- Plant Health and Environment Laboratory, Ministry for Primary Industries, P.O. Box 2095, Auckland 1140, New Zealand
| | | | - A.D. van Diepeningen
- Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD Utrecht, The Netherlands
| | - N. Van Hoa
- Southern Horticultural Research Institute, My Tho, Tien Giang, Vietnam
| | - Van Tri M.
- Southern Horticultural Research Institute, My Tho, Tien Giang, Vietnam
| | - N.P. Wiederhold
- Fungus Testing Laboratory, Department of Pathology, University of Texas Health Science Center, San Antonio, Texas, USA
| | - M. Wrzosek
- Department of Molecular Phylogenetics and Evolution, University of Warsaw, Żwirki and Wigury 101, PL-02-089 Warsaw, Poland
| | | | - J.Z. Groenewald
- Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD Utrecht, The Netherlands
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Videira S, Groenewald J, Nakashima C, Braun U, Barreto R, de Wit P, Crous P. Mycosphaerellaceae - Chaos or clarity? Stud Mycol 2017; 87:257-421. [PMID: 29180830 PMCID: PMC5693839 DOI: 10.1016/j.simyco.2017.09.003] [Citation(s) in RCA: 85] [Impact Index Per Article: 12.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022] Open
Abstract
The Mycosphaerellaceae represent thousands of fungal species that are associated with diseases on a wide range of plant hosts. Understanding and stabilising the taxonomy of genera and species of Mycosphaerellaceae is therefore of the utmost importance given their impact on agriculture, horticulture and forestry. Based on previous molecular studies, several phylogenetic and morphologically distinct genera within the Mycosphaerellaceae have been delimited. In this study a multigene phylogenetic analysis (LSU, ITS and rpb2) was performed based on 415 isolates representing 297 taxa and incorporating ex-type strains where available. The main aim of this study was to resolve the phylogenetic relationships among the genera currently recognised within the family, and to clarify the position of the cercosporoid fungi among them. Based on these results many well-known genera are shown to be paraphyletic, with several synapomorphic characters that have evolved more than once within the family. As a consequence, several old generic names including Cercosporidium, Fulvia, Mycovellosiella, Phaeoramularia and Raghnildiana are resurrected, and 32 additional genera are described as new. Based on phylogenetic data 120 genera are now accepted within the family, but many currently accepted cercosporoid genera still remain unresolved pending fresh collections and DNA data. The present study provides a phylogenetic framework for future taxonomic work within the Mycosphaerellaceae.
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Key Words
- Adelopus gaeumannii T. Rohde
- Amycosphaerella keniensis (Crous & T.A. Cout.) Videira & Crous
- Australosphaerella Videira & Crous
- Australosphaerella nootherensis (Carnegie) Videira & Crous
- Biharia vangueriae Thirum. & Mishra
- Brunswickiella Videira & Crous
- Brunswickiella parsonsiae (Crous & Summerell) Videira & Crous
- Catenulocercospora C. Nakash., Videira & Crous
- Catenulocercospora fusimaculans (G.F. Atk.) C. Nakash., Videira & Crous
- Cercoramularia Videira, H.D. Shin, C. Nakash. & Crous
- Cercoramularia koreana Videira, H.D. Shin, C. Nakash. & Crous
- Cercospora brachycarpa Syd.
- Cercospora cajani Henn.
- Cercospora desmodii Ellis & Kellerm.
- Cercospora ferruginea Fuckel
- Cercospora gnaphaliacea Cooke
- Cercospora gomphrenicola Speg.
- Cercospora henningsii Allesch.
- Cercospora mangiferae Koord.
- Cercospora microsora Sacc.
- Cercospora rosicola Pass.
- Cercospora smilacis Thüm.
- Cercospora tiliae Peck
- Cercosporidium californicum (S.T. Koike & Crous) Videira & Crous
- Cercosporidium helleri Earle
- Chuppomyces Videira & Crous
- Chuppomyces handelii (Bubák) U. Braun, C. Nakash., Videira & Crous
- Cladosporium bacilligerum Mont. & Fr.
- Cladosporium chaetomium Cooke
- Cladosporium fulvum Cooke
- Cladosporium lonicericola Yong H. He & Z.Y. Zhang
- Cladosporium personatum Berk. & M.A. Curtis
- Clarohilum Videira & Crous
- Clarohilum henningsii (Allesch.) Videira & Crous
- Clasterosporium degenerans Syd. & P. Syd.
- Clypeosphaerella calotropidis (Ellis & Everh.) Videira & Crous
- Collarispora Videira & Crous
- Collarispora valgourgensis (Crous) Videira & Crous
- Coremiopassalora U. Braun, C. Nakash., Videira & Crous
- Coremiopassalora eucalypti (Crous & Alfenas) U. Braun, C. Nakash., Videira & Crous
- Coremiopassalora leptophlebae (Crous et al.) U. Braun, C. Nakash., Videira & Crous
- Coryneum vitiphyllum Speschnew
- Cryptosporium acicola Thüm.
- Deightonomyces Videira & Crous
- Deightonomyces daleae (Ellis & Kellerm.) Videira & Crous
- Devonomyces Videira & Crous
- Devonomyces endophyticus (Crous & H. Sm. Ter) Videira & Crous
- Distocercosporaster Videira, H.D. Shin, C. Nakash. & Crous
- Distocercosporaster dioscoreae (Ellis & G. Martin) Videira, H.D. Shin, C. Nakash. & Crous
- Distomycovellosiella U. Braun, C. Nakash., Videira & Crous
- Distomycovellosiella brachycarpa (Syd.) U. Braun, C. Nakash., Videira & Crous
- Exopassalora Videira & Crous
- Exopassalora zambiae (Crous & T.A. Cout.) Videira & Crous
- Exosporium livistonicola U. Braun, Videira & Crous for Distocercospora livistonae U. Braun & C.F. Hill
- Exutisphaerella Videira & Crous
- Exutisphaerella laricina (R. Hartig) Videira & Crous
- Fusoidiella anethi (Pers.) Videira & Crous
- Graminopassalora U. Braun, C. Nakash., Videira & Crous
- Graminopassalora graminis (Fuckel) U. Braun, C. Nakash., Videira & Crous
- Helicoma fasciculatum Berk. & M.A. Curtis.
- Hyalocercosporidium Videira & Crous
- Hyalocercosporidium desmodii Videira & Crous
- Hyalozasmidium U. Braun, C. Nakash., Videira & Crous
- Hyalozasmidium aerohyalinosporum (Crous & Summerell) Videira & Crous
- Hyalozasmidium sideroxyli U. Braun, C. Nakash., Videira & Crous
- Isariopsis griseola Sacc.
- Madagascaromyces U. Braun, C. Nakash., Videira & Crous
- Madagascaromyces intermedius (Crous & M.J. Wingf.) Videira & Crous
- Micronematomyces U. Braun, C. Nakash., Videira & Crous
- Micronematomyces caribensis (Crous & Den Breeÿen) U. Braun, C. Nakash., Videira & Crous
- Micronematomyces chromolaenae (Crous & Den Breeÿen) U. Braun, C. Nakash., Videira & Crous
- Multi-gene phylogeny
- Mycosphaerella
- Neoceratosperma haldinae U. Braun, C. Nakash., Videira & Crous
- Neoceratosperma legnephoricola U. Braun, C. Nakash., Videira & Crous
- Neocercosporidium Videira & Crous
- Neocercosporidium smilacis (Thüm.) U. Braun, C. Nakash., Videira & Crous
- Neophloeospora Videira & Crous
- Neophloeospora maculans (Bérenger) Videira & Crous
- Nothopassalora U. Braun, C. Nakash., Videira & Crous
- Nothopassalora personata (Berk. & M.A. Curtis) U. Braun, C. Nakash., Videira & Crous
- Nothopericoniella Videira & Crous
- Nothopericoniella perseae-macranthae (Hosag. & U. Braun) Videira & Crous
- Nothophaeocryptopus Videira, C. Nakash., U. Braun, Crous
- Nothophaeocryptopus gaeumannii (T. Rohde) Videira, C. Nakash., U. Braun, Crous
- Pachyramichloridium Videira & Crous
- Pachyramichloridium pini (de Hoog & Rahman) U. Braun, C. Nakash., Videira & Crous
- Paracercosporidium Videira & Crous
- Paracercosporidium microsorum (Sacc.) U. Braun, C. Nakash., Videira & Crous
- Paracercosporidium tiliae (Peck) U. Braun, C. Nakash., Videira & Crous
- Paramycosphaerella wachendorfiae (Crous) Videira & Crous
- Paramycovellosiella Videira, H.D. Shin & Crous
- Paramycovellosiella passaloroides (G. Winter) Videira, H.D. Shin & Crous
- Parapallidocercospora Videira, Crous, U. Braun, C. Nakash.
- Parapallidocercospora colombiensis (Crous et al.) Videira & Crous
- Parapallidocercospora thailandica (Crous et al.) Videira & Crous
- Phaeocercospora juniperina (Georgescu & Badea) U. Braun, C. Nakash., Videira & Crous
- Plant pathogen
- Pleopassalora Videira & Crous
- Pleopassalora perplexa (Beilharz et al.) Videira & Crous
- Pleuropassalora U. Braun, C. Nakash., Videira & Crous
- Pleuropassalora armatae (Crous & A.R. Wood) U. Braun, C. Nakash., Videira & Crous
- Pluripassalora Videira & Crous
- Pluripassalora bougainvilleae (Munt.-Cvetk.) U. Braun, C. Nakash., Videira & Crous
- Pseudocercospora convoluta (Crous & Den Breeÿen) U. Braun, C. Nakash., Videira & Crous
- Pseudocercospora nodosa (Constant.) U. Braun, C. Nakash., Videira & Crous
- Pseudocercospora platanigena Videira & Crous for Stigmella platani Fuckel, non Pseudocercospora platani (J.M. Yen) J.M. Yen 1979
- Pseudocercospora zambiensis (Deighton) Crous & U. Braun
- Pseudopericoniella Videira & Crous
- Pseudopericoniella levispora (Arzanlou, W. Gams & Crous) Videira & Crous
- Pseudophaeophleospora U. Braun, C. Nakash., Videira & Crous
- Pseudophaeophleospora atkinsonii (Syd.) U. Braun, C. Nakash., Videira & Crous
- Pseudophaeophleospora stonei (Crous) U. Braun, C. Nakash., Videira & Crous
- Pseudozasmidium Videira & Crous
- Pseudozasmidium eucalypti (Crous & Summerell) Videira & Crous
- Pseudozasmidium nabiacense (Crous & Carnegie) Videira & Crous
- Pseudozasmidium parkii (Crous & Alfenas) Videira & Crous
- Pseudozasmidium vietnamense (Barber & T.I. Burgess) Videira & Crous
- Ragnhildiana ampelopsidis (Peck) U. Braun, C. Nakash., Videira & Crous
- Ragnhildiana diffusa (Heald & F.A. Wolf) Videira & Crous
- Ragnhildiana ferruginea (Fuckel) U. Braun, C. Nakash., Videira & Crous
- Ragnhildiana gnaphaliaceae (Cooke) Videira, H.D. Shin, C. Nakash. & Crous
- Ragnhildiana perfoliati (Ellis & Everh.) U. Braun, C. Nakash., Videira & Crous
- Ragnhildiana pseudotithoniae (Crous & Cheew.) U. Braun, C. Nakash., Videira & Crous
- Ramulispora sorghiphila U. Braun, C. Nakash., Videira & Crous
- Rhachisphaerella Videira & Crous
- Rhachisphaerella mozambica (Arzanlou & Crous) Videira & Crous
- Rosisphaerella Videira & Crous
- Rosisphaerella rosicola (Pass.) U. Braun, C. Nakash., Videira & Crous
- Scolicotrichum roumeguerei Briosi & Cavara
- Septoria martiniana Sacc
- Sphaerella araneosa Rehm
- Sphaerella laricina R. Hartig
- Stictosepta cupularis Petr.
- Stigmella platani Fuckel
- Sultanimyces Videira & Crous
- Sultanimyces vitiphyllus (Speschnew) Videira & Crous
- Tapeinosporium viride Bonord
- Taxonomy
- Utrechtiana roumeguerei (Cavara) Videira & Crous
- Virosphaerella Videira & Crous
- Virosphaerella irregularis (Cheew. et al.) Videira & Crous
- Virosphaerella pseudomarksii (Cheew. et al.) Videira & Crous
- Xenosonderhenioides Videira & Crous
- Xenosonderhenioides indonesiana C. Nakash., Videira & Crous
- Zasmidium arcuatum (Arzanlou et al.) Videira & Crous
- Zasmidium biverticillatum (Arzanlou & Crous) Videira & Crous
- Zasmidium cerophilum (Tubaki) U. Braun, C. Nakash., Videira & Crous
- Zasmidium daviesiae (Cooke & Massee) U. Braun, C. Nakash., Videira & Crous
- Zasmidium elaeocarpi U. Braun, C. Nakash., Videira & Crous
- Zasmidium eucalypticola U. Braun, C. Nakash., Videira & Crous
- Zasmidium grevilleae U. Braun, C. Nakash., Videira & Crous
- Zasmidium gupoyu (R. Kirschner) U. Braun, C. Nakash., Videira & Crous
- Zasmidium hakeae U. Braun, C. Nakash., Videira & Crous
- Zasmidium iteae (R. Kirschner) U. Braun, C. Nakash., Videira & Crous
- Zasmidium musae-banksii Videira & Crous for Ramichloridium australiense Arzanlou & Crous, non Zasmidium australiense (J.L. Mulder) U. Braun & Crous 2013
- Zasmidium musigenum Videira & Crous for Veronaea musae Stahel ex M.B. Ellis, non Zasmidium musae (Arzanlou & Crous) Crous & U. Braun 2010
- Zasmidium proteacearum (D.E. Shaw & Alcorn) U. Braun, C. Nakash. & Crous
- Zasmidium pseudotsugae (V.A.M. Mill. & Bonar) Videira & Crous
- Zasmidium pseudovespa (Carnegie) U. Braun, C. Nakash., Videira & Crous
- Zasmidium schini U. Braun, C. Nakash., Videira & Crous
- Zasmidium strelitziae (Arzanlou et al.) Videira & Crous
- Zasmidium tsugae (Dearn.) Videira & Crous
- Zasmidium velutinum (G. Winter) Videira & Crous
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Affiliation(s)
- S.I.R. Videira
- Westerdijk Fungal Biodiversity Institute, Uppsalalaan 8, 3584 CT, Utrecht, The Netherlands
- Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB, Wageningen, The Netherlands
| | - J.Z. Groenewald
- Westerdijk Fungal Biodiversity Institute, Uppsalalaan 8, 3584 CT, Utrecht, The Netherlands
| | - C. Nakashima
- Graduate School of Bioresources, Mie University, 1577 Kurima-machiya, Tsu, Mie, 514-8507, Japan
| | - U. Braun
- Martin-Luther-Universität Halle-Wittenberg, Institut für Biologie, Bereich Geobotanik, Herbarium, Neuwerk 21, 06099, Halle (Saale), Germany
| | - R.W. Barreto
- Departamento de Fitopatologia, Universidade Federal de Viçosa, Viçosa, MG, 36570-900, Brazil
| | - P.J.G.M. de Wit
- Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB, Wageningen, The Netherlands
| | - P.W. Crous
- Westerdijk Fungal Biodiversity Institute, Uppsalalaan 8, 3584 CT, Utrecht, The Netherlands
- Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB, Wageningen, The Netherlands
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Diao YZ, Zhang C, Liu F, Wang WZ, Liu L, Cai L, Liu XL. Colletotrichum species causing anthracnose disease of chili in China. PERSOONIA 2017; 38:20-37. [PMID: 29151625 PMCID: PMC5645185 DOI: 10.3767/003158517x692788] [Citation(s) in RCA: 79] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/12/2015] [Accepted: 03/21/2016] [Indexed: 11/25/2022]
Abstract
Anthracnose caused by Colletotrichum species is a serious disease of more than 30 plant genera. Several Colletotrichum species have been reported to infect chili in different countries. Although China is the largest chili-producing country, little is known about the species that have been infecting chili locally. Therefore, we collected samples of diseased chili from 29 provinces of China, from which 1285 strains were isolated. The morphological characters of all strains were observed and compared, and multi-locus phylogenetic analyses (ITS, ACT, CAL, CHS-1, GAPDH, TUB2, and HIS3) were performed on selected representative strains. Fifteen Colletotrichum species were identified, with C. fioriniae, C. fructicola, C. gloeosporioides, C. scovillei, and C. truncatum being prevalent. Three new species, C. conoides, C. grossum, and C. liaoningense, were recognised and described in this paper. Colletotrichum aenigma, C. cliviae, C. endophytica, C. hymenocallidis, C. incanum, C. karstii, and C. viniferum were reported for the first time from chili. Pathogenicity of all species isolated from chili was confirmed, except for C. endophytica. The current study improves the understanding of species causing anthracnose on chili and provides useful information for the effective control of the disease in China.
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Affiliation(s)
- Y.-Z. Diao
- Department of Plant Pathology, College of Plant Protection, China Agricultural University, Beijing, 100193, China
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China
| | - C. Zhang
- Department of Plant Pathology, College of Plant Protection, China Agricultural University, Beijing, 100193, China
| | - F. Liu
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China
| | - W.-Z. Wang
- Department of Plant Pathology, College of Plant Protection, China Agricultural University, Beijing, 100193, China
| | - L. Liu
- Department of Plant Pathology, College of Plant Protection, China Agricultural University, Beijing, 100193, China
| | - L. Cai
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China
| | - X.-L. Liu
- Department of Plant Pathology, College of Plant Protection, China Agricultural University, Beijing, 100193, China
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Hernández-Restrepo M, Gené J, Castañeda-Ruiz RF, Mena-Portales J, Crous PW, Guarro J. Phylogeny of saprobic microfungi from Southern Europe. Stud Mycol 2017. [PMID: 28626275 PMCID: PMC5470572 DOI: 10.1016/j.simyco.2017.05.002] [Citation(s) in RCA: 88] [Impact Index Per Article: 12.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022] Open
Abstract
During a survey of saprophytic microfungi on decomposing woody, herbaceous debris and soil from different regions in Southern Europe, a wide range of interesting species of asexual ascomycetes were found. Phylogenetic analyses based on partial gene sequences of SSU, LSU and ITS proved that most of these fungi were related to Sordariomycetes and Dothideomycetes and to lesser extent to Leotiomycetes and Eurotiomycetes. Four new monotypic orders with their respective families are proposed here, i.e. Lauriomycetales, Lauriomycetaceae; Parasympodiellales, Parasympodiellaceae; Vermiculariopsiellales, Vermiculariopsiellaceae and Xenospadicoidales, Xenospadicoidaceae. One new order and three families are introduced here to accommodate orphan taxa, viz. Kirschsteiniotheliales, Castanediellaceae, Leptodontidiaceae and Pleomonodictydaceae. Furthermore, Bloxamiaceae is validated. Based on morphology and phylogenetic affinities Diplococcium singulare, Trichocladium opacum and Spadicoides atra are moved to the new genera Paradiplococcium, Pleotrichocladium and Xenospadicoides, respectively. Helicoon fuscosporum is accommodated in the genus Magnohelicospora. Other novel genera include Neoascotaiwania with the type species N. terrestris sp. nov., and N. limnetica comb. nov. previously accommodated in Ascotaiwania; Pleomonodictys with P. descalsii sp. nov. as type species, and P. capensis comb. nov. previously accommodated in Monodictys; Anapleurothecium typified by A. botulisporum sp. nov., a fungus morphologically similar to Pleurothecium but phylogenetically distant; Fuscosclera typified by F. lignicola sp. nov., a meristematic fungus related to Leotiomycetes; Pseudodiplococcium typified by P. ibericum sp. nov. to accommodate an isolate previously identified as Diplococcium pulneyense; Xyladictyochaeta typified with X. lusitanica sp. nov., a foliicolous fungus related to Xylariales and similar to Dictyochaeta, but distinguished by polyphialidic conidiogenous cells produced on setiform conidiophores. Other novel species proposed are Brachysporiella navarrica, Catenulostroma lignicola, Cirrenalia iberica, Conioscypha pleiomorpha, Leptodontidium aureum, Pirozynskiella laurisilvatica, Parasympodiella lauri and Zanclospora iberica. To fix the application of some fungal names, lectotypes and/or epitypes are designated for Magnohelicospora iberica, Sporidesmium trigonellum, Sporidesmium opacum, Sporidesmium asperum, Camposporium aquaticum and Psilonia atra.
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Key Words
- Anapleurothecium Hern.-Restr., R.F. Castañeda & Gené
- Anapleurothecium botulisporum Hern.-Restr., R.F. Castañeda & Gené
- Biodiversity
- Brachysporiella navarrica Hern.-Restr., R.F. Castañeda & Gené
- Camposporium aquaticum Dudka
- Camposporium aquatium Dudka
- Castanediellaceae Hern.-Restr., Guarro & Crous
- Catenulostroma lignicola Hern.-Restr., J. Mena & Gené
- Cirrenalia iberica Hern.-Restr. & Gené
- Conioscypha pleiomorpha Hern.-Restr., R.F. Castañeda & Gené
- Dothideomycetes
- Eurotiomycetes
- Fuscosclera Hern.-Restr., J. Mena & Gené
- Fuscosclera lignicola Hern.-Restr., J. Mena & Gené
- Kirschsteiniotheliales Hern.-Restr., Gené, R.F. Castañeda & Crous
- Lauriomycetaceae Hern.-Restr., R.F. Castañeda & Guarro
- Lauriomycetales Hern.-Restr., R.F. Castañeda & Guarro
- Leotiomycetes
- Leptodontidiaceae Hern.-Restr., Crous & Gené
- Leptodontidium aureum Hern.-Restr., Guarro & Gené
- Magnohelicospora fuscospora (Linder) R.F. Castañeda, Hern.-Restr. & Gené
- Magnohelicospora iberica R.F. Castañeda, Hern.-Restr., Gené & Guarro
- Neoascotaiwania Hern.-Restr., R.F. Castañeda & Guarro
- Neoascotaiwania limnetica (H.S. Chang & S.Y. Hsieh) Hern.-Restr., R.F. Castañeda & Gené
- Paradiplococcium Hern.-Restr., J. Mena & Gené
- Paradiplococcium singulare (Hern.-Restr., J. Mena, Gené & Guarro) Hern.-Restr., J. Mena & Gené
- Parasympodiella lauri Hern.-Restr., Gene & Guarro
- Parasympodiellaceae Hern.-Restr., Gené, Guarro & Crous
- Parasympodiellales Hern.-Restr., Gené, R.F. Castañeda & Crous
- Pirozynskiella laurisilvatica Hern.-Restr., R.F. Castañeda & Gené
- Pleomonodictydaceae Hern.-Restr., J. Mena & Gené
- Pleomonodictys Hern.-Restr., J. Mena & Gené
- Pleomonodictys capensis (R.C. Sinclair, Boshoff & Eicker) Hern.-Restr., J. Mena & Gené
- Pleomonodictys descalsii Hern.-Restr., J. Mena & Gené
- Pleotrichocladium Hern.-Restr., R.F. Castañeda & Gené
- Pleotrichocladium opacum (Corda) Hern.-Restr., R.F. Castañeda & Gené
- Pseudodiplococcium Hern.-Restr., J. Mena & Gené
- Pseudodiplococcium ibericum Hern.-Restr., J. Mena & Gené
- Psilonia atra Corda
- Sordariomycetes
- Sporidesmium asperum Corda
- Sporidesmium opacum Corda
- Sporidesmium trigonellum Sacc.
- Systematics
- Vermiculariopsiellaceae Hern.-Restr., J. Mena, Gené & Crous
- Vermiculariopsiellales Hern.-Restr., J. Mena, Gené & Crous
- Xenospadicoidaceae Hern.-Restr., J. Mena & Gené
- Xenospadicoidales Hern.-Restr., J. Mena & Gené
- Xenospadicoides Hern.-Restr., J. Mena & Gené
- Xenospadicoides atra (Corda) Hern.-Restr., J. Mena & Gené
- Xyladictyochaeta Hern.-Restr., R.F. Castañeda & Gené
- Xyladictyochaeta lusitanica Hern.-Restr., R.F. Castañeda & Gené
- Zanclospora iberica Hern.-Restr., J. Mena & Gené
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Affiliation(s)
- M Hernández-Restrepo
- Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD Utrecht, The Netherlands.,Department of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, P. Bag X20, Pretoria 0028, South Africa
| | - J Gené
- Unitat de Micologia, Facultat de Medicina i Ciències de la Salut, Universitat Rovira i Virgili, 43201 Reus, Spain
| | - R F Castañeda-Ruiz
- Instituto de Investigaciones Fundamentales en Agricultura Tropical "Alejandro de Humboldt" (INIFAT), 17200, La Habana, Cuba
| | - J Mena-Portales
- Instituto de Ecología y Sistemática, Carretera Varona 11835 e/Oriente y Lindero, Capdevila, Boyeros, 11900, La Habana 19, Cuba
| | - P W Crous
- Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD Utrecht, The Netherlands.,Department of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, P. Bag X20, Pretoria 0028, South Africa.,Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands
| | - J Guarro
- Unitat de Micologia, Facultat de Medicina i Ciències de la Salut, Universitat Rovira i Virgili, 43201 Reus, Spain
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Bakhshi M, Arzanlou M. Multigene phylogeny reveals a new species and novel records and hosts in the genus Ramularia from Iran. Mycol Prog 2017. [DOI: 10.1007/s11557-017-1308-y] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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147
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Smith PA, Lutz M, Ziegler R, Piątek M. Anther smuts of Silene acaulis and S. uniflora in the Outer Hebrides, including an assessment of ITS genotypes of Microbotryum silenes-acaulis. IMA Fungus 2017; 8:107-116. [PMID: 28824843 PMCID: PMC5493529 DOI: 10.5598/imafungus.2017.08.01.08] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2016] [Accepted: 04/30/2017] [Indexed: 12/26/2022] Open
Abstract
Anther smuts on Silene acaulis and S. uniflora from the Outer Hebrides, Scotland, UK), are analysed using morphological and molecular techniques, and found to represent Microbotryum silenes-acaulis and M. silenes-inflatae, respectively. This is the first identification of caryophyllaceous anther smuts in the Outer Hebrides according to modern species concepts and the first report of Microbotryum silenes-acaulis confirmed by molecular analysis from the British Isles. Additionally, the genetic structure of Microbotryum silenes-acaulis, based on all currently available ITS sequences, is analysed and discussed. Seven ITS genotypes are determined for Microbotryum silenes-acaulis, including three genotypes in North America and four genotypes in Europe. Compared to European accessions, all North American accessions share specific nucleotides and are genetically divergent.
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Affiliation(s)
- Paul A Smith
- Statistical Sciences Research Institute, University of Southampton, Highfield, Southampton, SO17 1BJ, UK
| | - Matthias Lutz
- Plant Evolutionary Ecology, Institute of Evolution and Ecology, University of Tübingen, Auf der Morgenstelle 5, D-72076 Tübingen, Germany
| | - Rebekka Ziegler
- Plant Evolutionary Ecology, Institute of Evolution and Ecology, University of Tübingen, Auf der Morgenstelle 5, D-72076 Tübingen, Germany
| | - Marcin Piątek
- Department of Mycology, W. Szafer Institute of Botany, Polish Academy of Sciences, Lubicz 46, PL-31-512 Kraków, Poland
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148
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Bezerra JDP, Sandoval-Denis M, Paiva LM, Silva GA, Groenewald JZ, Souza-Motta CM, Crous PW. New endophytic Toxicocladosporium species from cacti in Brazil, and description of Neocladosporium gen. nov. IMA Fungus 2017; 8:77-97. [PMID: 28824841 PMCID: PMC5493539 DOI: 10.5598/imafungus.2017.08.01.06] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2017] [Accepted: 04/24/2017] [Indexed: 11/09/2022] Open
Abstract
Brazil harbours a unique ecosystem, the Caatinga, which belongs to the tropical dry forest biome. This region has an important diversity of organisms, and recently several new fungal species have been described from different hosts and substrates within it. During a survey of fungal endophyte diversity from cacti in this forest, we isolated cladosporium-like fungi that were subjected to morphological and multigene phylogenetic analyses including actA, ITS, LSU, rpb2 and tub2 gene sequences. Based on these analyses we identified two new species belonging to the genus Toxicocladosporium, described here as T. cacti and T. immaculatum spp. nov., isolated from Pilosocereus gounellei subsp. gounellei and Melocactus zehntneri, respectively. To improve the species recognition and assess species diversity in Toxicocladosporium we studied all ex-type strains of the genus, for which actA, rpb2 and tub2 barcodes were also generated. After phylogenetic reconstruction using five loci, we differentiated 13 species in the genus. Toxicocladosporium velox and T. chlamydosporum are synonymized based on their phylogenetic position and limited number of unique nucleotide differences. Six strains previously assigned to T. leucadendri, including the ex-type strain (CBS 131317) of that species, were found to belong to an undescribed genus here named as Neocladosporium gen. nov., with N. leucadendri comb. nov. as type species. Furthermore, this study proposes the actA, ITS, rpb2 and tub2 as main phylogenetic loci to recognise Toxicocladosporium species.
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Affiliation(s)
- Jadson D P Bezerra
- Departamento de Micologia Prof. Chaves Batista, Universidade Federal de Pernambuco, Av. Prof. Moraes Rego, s/n, Centro de Biociências, Cidade Universitária, CEP: 50670-901, Recife, PE, Brazil.,Programa de Pós-Graduação em Biologia de Fungos (PPG-BF), Departamento de Micologia Prof. Chaves Batista, Universidade Federal de Pernambuco, Av. Prof. Moraes Rego, s/n, Centro de Biociências, Cidade Universitária, CEP: 50670-901, Recife, PE, Brazil.,These authors contributed equally to this work
| | - Marcelo Sandoval-Denis
- Westerdijk Fungal Biodiversity Institute, Uppsalalaan 8, 3584 CT, Utrecht, The Netherlands.,Faculty of Natural and Agricultural Sciences, Department of Plant Sciences, University of the Free State, P.O. Box 339, Bloemfontein 9300, South Africa.,These authors contributed equally to this work
| | - Laura M Paiva
- Departamento de Micologia Prof. Chaves Batista, Universidade Federal de Pernambuco, Av. Prof. Moraes Rego, s/n, Centro de Biociências, Cidade Universitária, CEP: 50670-901, Recife, PE, Brazil
| | - Gladstone A Silva
- Departamento de Micologia Prof. Chaves Batista, Universidade Federal de Pernambuco, Av. Prof. Moraes Rego, s/n, Centro de Biociências, Cidade Universitária, CEP: 50670-901, Recife, PE, Brazil.,Programa de Pós-Graduação em Biologia de Fungos (PPG-BF), Departamento de Micologia Prof. Chaves Batista, Universidade Federal de Pernambuco, Av. Prof. Moraes Rego, s/n, Centro de Biociências, Cidade Universitária, CEP: 50670-901, Recife, PE, Brazil
| | - Johannes Z Groenewald
- Westerdijk Fungal Biodiversity Institute, Uppsalalaan 8, 3584 CT, Utrecht, The Netherlands
| | - Cristina M Souza-Motta
- Departamento de Micologia Prof. Chaves Batista, Universidade Federal de Pernambuco, Av. Prof. Moraes Rego, s/n, Centro de Biociências, Cidade Universitária, CEP: 50670-901, Recife, PE, Brazil.,Programa de Pós-Graduação em Biologia de Fungos (PPG-BF), Departamento de Micologia Prof. Chaves Batista, Universidade Federal de Pernambuco, Av. Prof. Moraes Rego, s/n, Centro de Biociências, Cidade Universitária, CEP: 50670-901, Recife, PE, Brazil
| | - Pedro W Crous
- Westerdijk Fungal Biodiversity Institute, Uppsalalaan 8, 3584 CT, Utrecht, The Netherlands.,Faculty of Natural and Agricultural Sciences, Department of Plant Sciences, University of the Free State, P.O. Box 339, Bloemfontein 9300, South Africa.,Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands
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149
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Ma R, Chen Q, Fan Y, Wang Q, Chen S, Liu X, Cai L, Yao B. Six new soil–inhabiting Cladosporium species from plateaus in China. Mycologia 2017; 109:244-260. [DOI: 10.1080/00275514.2017.1302254] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
- Rui Ma
- Key Laboratory of Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China
- Biotechnology Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China
- College of Agronomy and Biotechnology, China Agriculture University, Beijing 100094, China
- State Key Laboratory for Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing 100094, China
| | - Qian Chen
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China
| | - Yunliu Fan
- Biotechnology Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Qi Wang
- College of Agronomy and Biotechnology, China Agriculture University, Beijing 100094, China
| | - Sanfeng Chen
- State Key Laboratory for Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing 100094, China
| | - Xingzhong Liu
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China
| | - Lei Cai
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China
| | - Bin Yao
- Key Laboratory of Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China
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150
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Guillin EA, de Oliveira LO, Grijalba PE, Gottlieb AM. Genetic entanglement between Cercospora species associating soybean purple seed stain. Mycol Prog 2017. [DOI: 10.1007/s11557-017-1289-x] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
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