151
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Effects of methotrexate on the viscoelastic properties of single cells probed by atomic force microscopy. J Biol Phys 2016; 42:551-569. [PMID: 27438703 DOI: 10.1007/s10867-016-9423-6] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2016] [Accepted: 06/20/2016] [Indexed: 12/20/2022] Open
Abstract
Methotrexate is a commonly used anti-cancer chemotherapy drug. Cellular mechanical properties are fundamental parameters that reflect the physiological state of a cell. However, so far the role of cellular mechanical properties in the actions of methotrexate is still unclear. In recent years, probing the behaviors of single cells with the use of atomic force microscopy (AFM) has contributed much to the field of cell biomechanics. In this work, with the use of AFM, the effects of methotrexate on the viscoelastic properties of four types of cells were quantitatively investigated. The inhibitory and cytotoxic effects of methotrexate on the proliferation of cells were observed by optical and fluorescence microscopy. AFM indenting was used to measure the changes of cellular viscoelastic properties (Young's modulus and relaxation time) by using both conical tip and spherical tip, quantitatively showing that the stimulation of methotrexate resulted in a significant decrease of both cellular Young's modulus and relaxation times. The morphological changes of cells induced by methotrexate were visualized by AFM imaging. The study improves our understanding of methotrexate action and offers a novel way to quantify drug actions at the single-cell level by measuring cellular viscoelastic properties, which may have potential impacts on developing label-free methods for drug evaluation.
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152
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Rapidly Probing Antibacterial Activity of Graphene Oxide by Mass Spectrometry-based Metabolite Fingerprinting. Sci Rep 2016; 6:28045. [PMID: 27306507 PMCID: PMC4910068 DOI: 10.1038/srep28045] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2015] [Accepted: 05/26/2016] [Indexed: 01/24/2023] Open
Abstract
Application of nanomaterials as anti-bacteria agents has aroused great attention. To investigate the antibacterial activity and antibacterial mechanism of nanomaterials from a molecular perspective is important for efficient developing of nanomaterial antibiotics. In the current work, a new mass spectrometry-based method was established to investigate the bacterial cytotoxicity of graphene oxide (GO) by the metabolite fingerprinting of microbes. The mass spectra of extracted metabolites from two strains DH5α and ATCC25922 were obtained before and after the incubation with nanomaterials respectively. Then principal component analysis (PCA) of these spectra was performed to reveal the relationship between the metabolism disorder of microbes and bactericidal activity of GO. A parameter “D” obtained from PCA scores was proposed that is capable to quantitatively evaluate the antibacterial activity of GO in concentration and time-dependent experiments. Further annotation of the fingerprinting spectra shows the variabilities of important metabolites such as phosphatidylethanolamine, phosphatidylglycerol and glutathione. This metabolic perturbation of E. coli indicates cell membrane destruction and oxidative stress mechanisms for anti-bacteria activity of graphene oxide. It is anticipated that this mass spectrometry-based metabolite fingerprinting method will be applicable to other antibacterial nanomaterials and provide more clues as to their antibacterial mechanism at molecular level.
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153
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Chen J, Park B. Recent Advancements in Nanobioassays and Nanobiosensors for Foodborne Pathogenic Bacteria Detection. J Food Prot 2016; 79:1055-69. [PMID: 27296612 DOI: 10.4315/0362-028x.jfp-15-516] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
Bacterial pathogens are one of the leading causes of food safety incidents and product recalls worldwide. Timely detection and identification of microbial contamination in agricultural and food products is crucial for disease prevention and outbreak investigation. In efforts to improve and/or replace time-consuming and laborious "gold standards" for pathogen detection, numerous alternative rapid methods have been proposed in the past 15 years, with a trend toward incorporating nanotechnology and nanomaterials in food pathogen detection. This article is a review of the use of nanotechnology in various detection and sample preparation techniques and advancements in nanotechnology applications in food matrices. Some practical considerations in nanobioassay design are discussed, and the gaps between research status quo and market demands are identified.
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Affiliation(s)
- Jing Chen
- U.S. Department of Agriculture, Agricultural Research Service, U.S. National Poultry Research Center, 950 College Station Road, Athens, Georgia 30605, USA
| | - Bosoon Park
- U.S. Department of Agriculture, Agricultural Research Service, U.S. National Poultry Research Center, 950 College Station Road, Athens, Georgia 30605, USA.
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154
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Hui TH, Zhou ZL, Fong HW, Ngan RKC, Lee TY, Au JSK, Ngan AHW, Yip TTC, Lin Y. Characterizing the malignancy and drug resistance of cancer cells from their membrane resealing response. Sci Rep 2016; 6:26692. [PMID: 27225309 PMCID: PMC4880901 DOI: 10.1038/srep26692] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2016] [Accepted: 05/06/2016] [Indexed: 11/08/2022] Open
Abstract
In this report, we showed that two tumor cell characteristics, namely the malignancy and drug-resistance status can be evaluated by their membrane resealing response. Specifically, membrane pores in a number of pairs of cancer and normal cell lines originated from nasopharynx, lung and intestine were introduced by nano-mechanical puncturing. Interestingly, such nanometer-sized holes in tumor cells can reseal ~2-3 times faster than those in the corresponding normal cells. Furthermore, the membrane resealing time in cancer cell lines exhibiting resistance to several leading chemotherapeutic drugs was also found to be substantially shorter than that in their drug-sensitive counterparts, demonstrating the potential of using this quantity as a novel marker for future cancer diagnosis and drug resistance detection. Finally, a simple model was proposed to explain the observed resealing dynamics of cells which suggested that the distinct response exhibited by normal, tumor and drug resistant cells is likely due to the different tension levels in their lipid membranes, a conclusion that is also supported by direct cortical tension measurement.
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Affiliation(s)
- T. H. Hui
- Department of Mechanical Engineering, The University of Hong Kong, Hong Kong SAR, China
- HKU-Shenzhen Institute of Research and Innovation (HKU-SIRI), Shenzhen, Guangdong, China
| | - Z. L. Zhou
- Department of Mechanical Engineering, The University of Hong Kong, Hong Kong SAR, China
| | - H. W. Fong
- Department of Clinical Oncology, Queen Elizabeth Hospital, Hong Kong SAR, China
| | - Roger K. C. Ngan
- Department of Clinical Oncology, Queen Elizabeth Hospital, Hong Kong SAR, China
| | - T. Y. Lee
- Department of Clinical Oncology, Queen Elizabeth Hospital, Hong Kong SAR, China
| | - Joseph S. K. Au
- Department of Clinical Oncology, Queen Elizabeth Hospital, Hong Kong SAR, China
| | - A. H. W. Ngan
- Department of Mechanical Engineering, The University of Hong Kong, Hong Kong SAR, China
| | - Timothy T. C. Yip
- Department of Clinical Oncology, Queen Elizabeth Hospital, Hong Kong SAR, China
| | - Y. Lin
- Department of Mechanical Engineering, The University of Hong Kong, Hong Kong SAR, China
- HKU-Shenzhen Institute of Research and Innovation (HKU-SIRI), Shenzhen, Guangdong, China
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155
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Lee EJ, Cho MR, Kim S, Park YD, Kouh T. Dynamics of a surface-modified miniaturized SiN mechanical resonator via a nanometer-scale pore array. NANOTECHNOLOGY 2016; 27:195203. [PMID: 27039942 DOI: 10.1088/0957-4484/27/19/195203] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
We have fabricated porous miniaturized SiN resonators with various dimensions and studied their mechanical dynamics at their resonant modes. The surface modification of the resonators has been achieved by etching through a thin porous anodic aluminum oxide (AAO) mask, prepared by two-step anodization. Even though these porous resonators show well-defined Lorentzian line-shapes at their resonant modes, the corresponding fundamental flexural resonance frequencies are lower than those from typical non-porous resonators. The change in the resonance frequency is due to the presence of the pores on the surface, which reduces the effective tensile stress across the beam structure, as shown from both experimental measurements and the computational model. In addition, the observed quality factor reveals the level of dissipation originating from the surface modification. The principal dissipation mechanism is found to be gas damping in the free molecular flow regime. Based on the dissipation measurement, one can see an increase in the surface-to-mass ratio, which is responsible for the increased dissipation in the porous beam structure. The work presented here demonstrates simple integration of mechanical elements with a nanopatterning technique based on an AAO as well as the tuning of mechanics via surface modification at a small scale. Such a scheme could provide an additional degree of freedom in developing a mechanical sensing element with enhanced effective surface area.
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Affiliation(s)
- Eun Joong Lee
- Department of Physics, Kookmin University, Seoul 136-702, Korea
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156
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Xiao R, Wang C, Zhu A, Long F. Single functional magnetic-bead as universal biosensing platform for trace analyte detection using SERS-nanobioprobe. Biosens Bioelectron 2016; 79:661-8. [DOI: 10.1016/j.bios.2015.12.108] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2015] [Revised: 12/30/2015] [Accepted: 12/31/2015] [Indexed: 11/28/2022]
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157
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Hui F, Vajha P, Shi Y, Ji Y, Duan H, Padovani A, Larcher L, Li XR, Xu JJ, Lanza M. Moving graphene devices from lab to market: advanced graphene-coated nanoprobes. NANOSCALE 2016; 8:8466-8473. [PMID: 26593053 DOI: 10.1039/c5nr06235g] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
After more than a decade working with graphene there is still a preoccupying lack of commercial devices based on this wonder material. Here we report the use of high-quality solution-processed graphene sheets to fabricate ultra-sharp probes with superior performance. Nanoprobes are versatile tools used in many fields of science, but they can wear fast after some experiments, reducing the quality and increasing the cost of the research. As the market of nanoprobes is huge, providing a solution for this problem should be a priority for the nanotechnology industry. Our graphene-coated nanoprobes not only show enhanced lifetime, but also additional unique properties of graphene, such as hydrophobicity. Moreover, we have functionalized the surface of graphene to provide piezoelectric capability, and have fabricated a nano relay. The simplicity and low cost of this method, which can be used to coat any kind of sharp tip, make it suitable for the industry, allowing production on demand.
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Affiliation(s)
- Fei Hui
- Institute of Functional Nano & Soft Materials (FUNSOM), Collaborative Innovation Center of Suzhou Nanoscience and Technology, Soochow University, 199 Ren-Ai Road, Suzhou 215123, China.
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158
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Xu P, Yu H, Li X. Microgravimetric Analysis Method for Activation-Energy Extraction from Trace-Amount Molecule Adsorption. Anal Chem 2016; 88:4903-8. [DOI: 10.1021/acs.analchem.6b00757] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Pengcheng Xu
- State Key Lab of Transducer
Technology, Shanghai Institute of Microsystem and Information Technology, Chinese Academy of Sciences, 865 Changning Road, Shanghai 200050, China
| | - Haitao Yu
- State Key Lab of Transducer
Technology, Shanghai Institute of Microsystem and Information Technology, Chinese Academy of Sciences, 865 Changning Road, Shanghai 200050, China
| | - Xinxin Li
- State Key Lab of Transducer
Technology, Shanghai Institute of Microsystem and Information Technology, Chinese Academy of Sciences, 865 Changning Road, Shanghai 200050, China
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159
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Wang C, Zolotarskaya OY, Nair SS, Ehrhardt CJ, Ohman DE, Wynne KJ, Yadavalli VK. Real-Time Observation of Antimicrobial Polycation Effects on Escherichia coli: Adapting the Carpet Model for Membrane Disruption to Quaternary Copolyoxetanes. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2016; 32:2975-2984. [PMID: 26948099 DOI: 10.1021/acs.langmuir.5b04247] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Real-time atomic force microscopy (AFM) was used for analyzing effects of the antimicrobial polycation copolyoxetane P[(C12)-(ME2Ox)-50/50], C12-50 on the membrane of a model bacterium, Escherichia coli (ATCC# 35218). AFM imaging showed cell membrane changes with increasing C12-50 concentration and time including nanopore formation and bulges associated with outer bacterial membrane disruption. A macroscale bactericidal concentration study for C12-50 showed a 4 log kill at 15 μg/mL with conditions paralleling imaging (1 h, 1x PBS, physiological pH, 25 °C). The dramatic changes from the control image to 1 h after introducing 15 μg/mL C12-50 are therefore reasonably attributed to cell death. At the highest concentration (60 μg/mL) further cell membrane disruption results in leakage of cytoplasm driven by detergent-like action. The sequence of processes for initial membrane disruption by the synthetic polycation C12-50 follows the carpet model posited for antimicrobial peptides (AMPs). However, the nanoscale details are distinctly different as C12-50 is a synthetic, water-soluble copolycation that is best modeled as a random coil. In a complementary AFM study, chemical force microscopy shows that incubating cells with C12-50 decreased the hydrophobicity across the entire cell surface at an early stage. This finding provides additional evidence indicating that C12-50 polycations initially bind with the cell membrane in a carpet-like fashion. Taken together, real time AFM imaging elucidates the mechanism of antimicrobial action for copolyoxetane C12-50 at the single cell level. In future work this approach will provide important insights into structure-property relationships and improved antimicrobial effectiveness for synthetic amphiphilic polycations.
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Affiliation(s)
- Congzhou Wang
- Department of Chemical and Life Science Engineering and ‡Department of Forensic Science, Virginia Commonwealth University , Richmond, Virginia 23284, United States
- Department of Microbiology and Immunology and ∥McGuire Veterans Affairs Medical Center, VCU School of Medicine , Richmond, Virginia 23249, United States
| | - Olga Y Zolotarskaya
- Department of Chemical and Life Science Engineering and ‡Department of Forensic Science, Virginia Commonwealth University , Richmond, Virginia 23284, United States
- Department of Microbiology and Immunology and ∥McGuire Veterans Affairs Medical Center, VCU School of Medicine , Richmond, Virginia 23249, United States
| | - Sithara S Nair
- Department of Chemical and Life Science Engineering and ‡Department of Forensic Science, Virginia Commonwealth University , Richmond, Virginia 23284, United States
- Department of Microbiology and Immunology and ∥McGuire Veterans Affairs Medical Center, VCU School of Medicine , Richmond, Virginia 23249, United States
| | - Christopher J Ehrhardt
- Department of Chemical and Life Science Engineering and ‡Department of Forensic Science, Virginia Commonwealth University , Richmond, Virginia 23284, United States
- Department of Microbiology and Immunology and ∥McGuire Veterans Affairs Medical Center, VCU School of Medicine , Richmond, Virginia 23249, United States
| | - Dennis E Ohman
- Department of Chemical and Life Science Engineering and ‡Department of Forensic Science, Virginia Commonwealth University , Richmond, Virginia 23284, United States
- Department of Microbiology and Immunology and ∥McGuire Veterans Affairs Medical Center, VCU School of Medicine , Richmond, Virginia 23249, United States
| | - Kenneth J Wynne
- Department of Chemical and Life Science Engineering and ‡Department of Forensic Science, Virginia Commonwealth University , Richmond, Virginia 23284, United States
- Department of Microbiology and Immunology and ∥McGuire Veterans Affairs Medical Center, VCU School of Medicine , Richmond, Virginia 23249, United States
| | - Vamsi K Yadavalli
- Department of Chemical and Life Science Engineering and ‡Department of Forensic Science, Virginia Commonwealth University , Richmond, Virginia 23284, United States
- Department of Microbiology and Immunology and ∥McGuire Veterans Affairs Medical Center, VCU School of Medicine , Richmond, Virginia 23249, United States
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160
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Turapov O, Loraine J, Jenkins CH, Barthe P, McFeely D, Forti F, Ghisotti D, Hesek D, Lee M, Bottrill AR, Vollmer W, Mobashery S, Cohen-Gonsaud M, Mukamolova GV. The external PASTA domain of the essential serine/threonine protein kinase PknB regulates mycobacterial growth. Open Biol 2016; 5:150025. [PMID: 26136255 PMCID: PMC4632501 DOI: 10.1098/rsob.150025] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022] Open
Abstract
PknB is an essential serine/threonine protein kinase required for mycobacterial cell division and cell-wall biosynthesis. Here we demonstrate that overexpression of the external PknB_PASTA domain in mycobacteria results in delayed regrowth, accumulation of elongated bacteria and increased sensitivity to β-lactam antibiotics. These changes are accompanied by altered production of certain enzymes involved in cell-wall biosynthesis as revealed by proteomics studies. The growth inhibition caused by overexpression of the PknB_PASTA domain is completely abolished by enhanced concentration of magnesium ions, but not muropeptides. Finally, we show that the addition of recombinant PASTA domain could prevent regrowth of Mycobacterium tuberculosis, and therefore offers an alternative opportunity to control replication of this pathogen. These results suggest that the PknB_PASTA domain is involved in regulation of peptidoglycan biosynthesis and maintenance of cell-wall architecture.
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Affiliation(s)
- Obolbek Turapov
- Department of Infection, Immunity and Inflammation, University of Leicester, Leicester LE1 9HN, UK
| | - Jessica Loraine
- Department of Infection, Immunity and Inflammation, University of Leicester, Leicester LE1 9HN, UK
| | - Christopher H Jenkins
- Department of Infection, Immunity and Inflammation, University of Leicester, Leicester LE1 9HN, UK
| | - Philippe Barthe
- Centre de Biochimie Structurale, CNRS UMR 5048, 29, rue de Navacelles, Montpellier 34090, France INSERM U1054, Université Montpellier I et II, Montpellier, France
| | - Daniel McFeely
- Department of Infection, Immunity and Inflammation, University of Leicester, Leicester LE1 9HN, UK
| | - Francesca Forti
- Dipartimento di BioScienze, Università degli Studi di Milano, Milan, Italy
| | - Daniela Ghisotti
- Dipartimento di BioScienze, Università degli Studi di Milano, Milan, Italy
| | - Dusan Hesek
- Department of Chemistry and Biochemistry, 423 Nieuwland Science Center, University of Notre Dame, Notre Dame, IN 46556, USA
| | - Mijoon Lee
- Department of Chemistry and Biochemistry, 423 Nieuwland Science Center, University of Notre Dame, Notre Dame, IN 46556, USA
| | - Andrew R Bottrill
- Department of Infection, Immunity and Inflammation, University of Leicester, Leicester LE1 9HN, UK
| | - Waldemar Vollmer
- Centre for Bacterial Cell Biology, Institute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne NE2 4AX, UK
| | - Shahriar Mobashery
- Department of Chemistry and Biochemistry, 423 Nieuwland Science Center, University of Notre Dame, Notre Dame, IN 46556, USA
| | - Martin Cohen-Gonsaud
- Centre de Biochimie Structurale, CNRS UMR 5048, 29, rue de Navacelles, Montpellier 34090, France INSERM U1054, Université Montpellier I et II, Montpellier, France
| | - Galina V Mukamolova
- Department of Infection, Immunity and Inflammation, University of Leicester, Leicester LE1 9HN, UK
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161
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Rapid bacterial antibiotic susceptibility test based on simple surface-enhanced Raman spectroscopic biomarkers. Sci Rep 2016; 6:23375. [PMID: 26997474 PMCID: PMC4800312 DOI: 10.1038/srep23375] [Citation(s) in RCA: 76] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2015] [Accepted: 03/04/2016] [Indexed: 01/08/2023] Open
Abstract
Rapid bacterial antibiotic susceptibility test (AST) and minimum inhibitory concentration (MIC) measurement are important to help reduce the widespread misuse of antibiotics and alleviate the growing drug-resistance problem. We discovered that, when a susceptible strain of Staphylococcus aureus or Escherichia coli is exposed to an antibiotic, the intensity of specific biomarkers in its surface-enhanced Raman scattering (SERS) spectra drops evidently in two hours. The discovery has been exploited for rapid AST and MIC determination of methicillin-susceptible S. aureus and wild-type E. coli as well as clinical isolates. The results obtained by this SERS-AST method were consistent with that by the standard incubation-based method, indicating its high potential to supplement or replace existing time-consuming methods and help mitigate the challenge of drug resistance in clinical microbiology.
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162
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Chung CY, Wang JC, Chuang HS. Rapid Bead-Based Antimicrobial Susceptibility Testing by Optical Diffusometry. PLoS One 2016; 11:e0148864. [PMID: 26863001 PMCID: PMC4749332 DOI: 10.1371/journal.pone.0148864] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2015] [Accepted: 01/25/2016] [Indexed: 01/25/2023] Open
Abstract
This study combined optical diffusometry and bead-based immunoassays to develop a novel technique for quantifying the growth of specific microorganisms and achieving rapid AST. Diffusivity rises when live bacteria attach to particles, resulting in additional energy from motile microorganisms. However, when UV-sterilized (dead) bacteria attach to particles, diffusivity declines. The experimental data are consistent with the theoretical model predicted according to the equivalent volume diameter. Using this diffusometric platform, the susceptibility of Pseudomonas aeruginosa to the antibiotic gentamicin was tested. The result suggests that the proliferation of bacteria is effectively controlled by gentamicin. This study demonstrated a sensitive (one bacterium on single particles) and time-saving (within 2 h) platform with a small sample volume (~0.5 μL) and a low initial bacteria count (50 CFU per droplet ~ 105 CFU/mL) for quantifying the growth of microorganisms depending on Brownian motion. The technique can be applied further to other bacterial strains and increase the success of treatments against infectious diseases in the near future.
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Affiliation(s)
- Chih-Yao Chung
- Department of Biomedical Engineering, National Cheng Kung University, Tainan, Taiwan
| | - Jhih-Cheng Wang
- Department of Biomedical Engineering, National Cheng Kung University, Tainan, Taiwan
- Division of Urology, Department of Surgery, Chi Mei Medical Center, Tainan, Taiwan
| | - Han-Sheng Chuang
- Department of Biomedical Engineering, National Cheng Kung University, Tainan, Taiwan
- Medical Device Innovation Center, National Cheng Kung University, Tainan, Taiwan
- * E-mail:
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163
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Lafleur JP, Jönsson A, Senkbeil S, Kutter JP. Recent advances in lab-on-a-chip for biosensing applications. Biosens Bioelectron 2016; 76:213-33. [DOI: 10.1016/j.bios.2015.08.003] [Citation(s) in RCA: 126] [Impact Index Per Article: 15.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2015] [Revised: 07/31/2015] [Accepted: 08/03/2015] [Indexed: 12/15/2022]
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164
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Detection methods for centrifugal microfluidic platforms. Biosens Bioelectron 2016; 76:54-67. [DOI: 10.1016/j.bios.2015.06.075] [Citation(s) in RCA: 50] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2015] [Revised: 06/28/2015] [Accepted: 06/29/2015] [Indexed: 01/18/2023]
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165
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Syal K, Iriya R, Yang Y, Yu H, Wang S, Haydel SE, Chen HY, Tao N. Antimicrobial Susceptibility Test with Plasmonic Imaging and Tracking of Single Bacterial Motions on Nanometer Scale. ACS NANO 2016; 10:845-52. [PMID: 26637243 DOI: 10.1021/acsnano.5b05944] [Citation(s) in RCA: 89] [Impact Index Per Article: 11.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
Antimicrobial susceptibility tests (ASTs) are important for confirming susceptibility to empirical antibiotics and detecting resistance in bacterial isolates. Currently, most ASTs performed in clinical microbiology laboratories are based on bacterial culturing, which take days to complete for slowly growing microorganisms. A faster AST will reduce morbidity and mortality rates and help healthcare providers administer narrow spectrum antibiotics at the earliest possible treatment stage. We report the development of a nonculture-based AST using a plasmonic imaging and tracking (PIT) technology. We track the motion of individual bacterial cells tethered to a surface with nanometer (nm) precision and correlate the phenotypic motion with bacterial metabolism and antibiotic action. We show that antibiotic action significantly slows down bacterial motion, which can be quantified for development of a rapid phenotypic-based AST.
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Affiliation(s)
- Karan Syal
- Center for Biosensors and Bioelectronics, The Biodesign Institute, Arizona State University , Tempe, Arizona 85287, United States
| | - Rafael Iriya
- Center for Biosensors and Bioelectronics, The Biodesign Institute, Arizona State University , Tempe, Arizona 85287, United States
- School of Electrical, Computer and Energy Engineering, Arizona State University , Tempe, Arizona 85287, United States
| | - Yunze Yang
- Center for Biosensors and Bioelectronics, The Biodesign Institute, Arizona State University , Tempe, Arizona 85287, United States
- School of Electrical, Computer and Energy Engineering, Arizona State University , Tempe, Arizona 85287, United States
| | - Hui Yu
- Center for Biosensors and Bioelectronics, The Biodesign Institute, Arizona State University , Tempe, Arizona 85287, United States
| | - Shaopeng Wang
- Center for Biosensors and Bioelectronics, The Biodesign Institute, Arizona State University , Tempe, Arizona 85287, United States
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University , Nanjing 210093, China
| | - Shelley E Haydel
- Center for Infectious Diseases and Vaccinology, The Biodesign Institute, Arizona State University , Tempe, Arizona 85287, United States
- School of Life Sciences, Arizona State University , Tempe, Arizona 85287, United States
| | - Hong-Yuan Chen
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University , Nanjing 210093, China
| | - Nongjian Tao
- Center for Biosensors and Bioelectronics, The Biodesign Institute, Arizona State University , Tempe, Arizona 85287, United States
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University , Nanjing 210093, China
- School of Electrical, Computer and Energy Engineering, Arizona State University , Tempe, Arizona 85287, United States
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166
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Dinarelli S, Girasole M, Kasas S, Longo G. Nanotools and molecular techniques to rapidly identify and fight bacterial infections. J Microbiol Methods 2016; 138:72-81. [PMID: 26806415 DOI: 10.1016/j.mimet.2016.01.005] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2015] [Revised: 01/13/2016] [Accepted: 01/13/2016] [Indexed: 12/22/2022]
Abstract
Reducing the emergence and spread of antibiotic-resistant bacteria is one of the major healthcare issues of our century. In addition to the increased mortality, infections caused by multi-resistant bacteria drastically enhance the healthcare costs, mainly because of the longer duration of illness and treatment. While in the last 20years, bacterial identification has been revolutionized by the introduction of new molecular techniques, the current phenotypic techniques to determine the susceptibilities of common Gram-positive and Gram-negative bacteria require at least two days from collection of clinical samples. Therefore, there is an urgent need for the development of new technologies to determine rapidly drug susceptibility in bacteria and to achieve faster diagnoses. These techniques would also lead to a better understanding of the mechanisms that lead to the insurgence of the resistance, greatly helping the quest for new antibacterial systems and drugs. In this review, we describe some of the tools most currently used in clinical and microbiological research to study bacteria and to address the challenge of infections. We discuss the most interesting advancements in the molecular susceptibility testing systems, with a particular focus on the many applications of the MALDI-TOF MS system. In the field of the phenotypic characterization protocols, we detail some of the most promising semi-automated commercial systems and we focus on some emerging developments in the field of nanomechanical sensors, which constitute a step towards the development of rapid and affordable point-of-care testing devices and techniques. While there is still no innovative technique that is capable of completely substituting for the conventional protocols and clinical practices, many exciting new experimental setups and tools could constitute the basis of the standard testing package of future microbiological tests.
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Affiliation(s)
- S Dinarelli
- Istituto di Struttura della Materia, Consiglio Nazionale delle Ricerche, Rome, Italy
| | - M Girasole
- Istituto di Struttura della Materia, Consiglio Nazionale delle Ricerche, Rome, Italy
| | - S Kasas
- Ecole Polytechnique Fédérale de Lausanne, Laboratoire de Physique de la Matière Vivante, Lausanne, Switzerland; Département des Neurosciences Fondamentales, Université de Lausanne, Lausanne, Switzerland
| | - G Longo
- Istituto di Struttura della Materia, Consiglio Nazionale delle Ricerche, Rome, Italy.
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167
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Li M, Gan C, Shao W, Yu C, Wang X, Chen Y. Effects of membrane lipid composition and antibacterial drugs on the rigidity of Escherichia coli: Different contributions of various bacterial substructures. SCANNING 2016; 38:70-79. [PMID: 26153236 DOI: 10.1002/sca.21243] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/06/2015] [Revised: 06/18/2015] [Accepted: 06/22/2015] [Indexed: 06/04/2023]
Abstract
The rigidity/stiffness is an important biomechanical property of bacteria and potentially correlated with many bacterial activities. While the rigidity or fluidity of the bacterial membrane has been extensively studied, the contributions of different bacterial substructures to the bacterial rigidity are less investigated. Here, we utilized four Escherichia coli (E. coli) strains with different membrane lipid compositions and three antibacterial drugs (EDTA, lysozyme, and streptomycin) to specifically alter bacterial substructures. By using atomic force microscopy (AFM), we found that the average height and Young's modulus of phosphatidylethanolamine (PE)-deficient E. coli strains were larger than those of PE(+) strains and that EDTA, EDTA plus lysozyme instead of lysozyme alone, and streptomycin all caused significant decreases in height and Young's modulus of the four E. coli strains. Our data imply that membrane lipid composition, the integrated outer membrane, the cell wall, and the cytoplasmic content are all responsible for bacterial rigidity but to different extents.
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Affiliation(s)
- Ming Li
- Nanoscale Science and Technology Laboratory, Institute for Advanced Study, Nanchang University, Nanchang, Jiangxi, People's Republic of China
- College of Life Sciences, Nanchang University, Nanchang, Jiangxi, People's Republic of China
| | - Chaoye Gan
- Nanoscale Science and Technology Laboratory, Institute for Advanced Study, Nanchang University, Nanchang, Jiangxi, People's Republic of China
- College of Life Sciences, Nanchang University, Nanchang, Jiangxi, People's Republic of China
| | - Wenxiang Shao
- School of Basic Medical Sciences, Jiangxi University of Traditional Chinese Medicine, Nanchang, Jiangxi, People's Republic of China
| | - Chuan Yu
- Nanoscale Science and Technology Laboratory, Institute for Advanced Study, Nanchang University, Nanchang, Jiangxi, People's Republic of China
- College of Life Sciences, Nanchang University, Nanchang, Jiangxi, People's Republic of China
| | - Xingguo Wang
- Faculty of Life Sciences, Hubei University, Wuchang, Hubei, People's Republic of China
| | - Yong Chen
- Nanoscale Science and Technology Laboratory, Institute for Advanced Study, Nanchang University, Nanchang, Jiangxi, People's Republic of China
- College of Life Sciences, Nanchang University, Nanchang, Jiangxi, People's Republic of China
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168
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Chen Q, Andersson A, Mecklenburg M, Xie B. A biosensing strategy for the rapid detection and classification of antibiotic resistance. Biosens Bioelectron 2015; 73:251-255. [DOI: 10.1016/j.bios.2015.06.011] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2015] [Revised: 05/23/2015] [Accepted: 06/06/2015] [Indexed: 11/28/2022]
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169
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Yoo SM, Lee SY. Optical Biosensors for the Detection of Pathogenic Microorganisms. Trends Biotechnol 2015; 34:7-25. [PMID: 26506111 DOI: 10.1016/j.tibtech.2015.09.012] [Citation(s) in RCA: 292] [Impact Index Per Article: 32.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2015] [Revised: 08/28/2015] [Accepted: 09/17/2015] [Indexed: 12/21/2022]
Abstract
Pathogenic microorganisms are causative agents of various infectious diseases that are becoming increasingly serious worldwide. For the successful treatment of pathogenic infection, the rapid and accurate detection of multiple pathogenic microorganisms is of great importance in all areas related to health and safety. Among various sensor systems, optical biosensors allow easy-to-use, rapid, portable, multiplexed, and cost-effective diagnosis. Here, we review current trends and advances in pathogen-diagnostic optical biosensors. The technological and methodological approaches underlying diverse optical-sensing platforms and methods for detecting pathogenic microorganisms are reviewed, together with the strengths and drawbacks of each technique. Finally, challenges in developing efficient optical biosensor systems and future perspectives are discussed.
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Affiliation(s)
- Seung Min Yoo
- Metabolic and Biomolecular Engineering National Research Laboratory, Department of Chemical and Biomolecular Engineering (BK21 plus Program), BioProcess Engineering Research Center, KAIST, Daejeon 34141, Republic of Korea
| | - Sang Yup Lee
- Metabolic and Biomolecular Engineering National Research Laboratory, Department of Chemical and Biomolecular Engineering (BK21 plus Program), BioProcess Engineering Research Center, KAIST, Daejeon 34141, Republic of Korea.
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170
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Ji Y, Hui F, Shi Y, Han T, Song X, Pan C, Lanza M. Note: Fabrication of a fast-response and user-friendly environmental chamber for atomic force microscopes. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2015; 86:106105. [PMID: 26521002 DOI: 10.1063/1.4932965] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
The atomic force microscope is one of the most widespread tools in science, but many suppliers do not provide a competitive solution to make experiments in controlled atmospheres. Here, we provide a solution to this problem by fabricating a fast-response and user-friendly environmental chamber. We corroborate the correct functioning of the chamber by studying the formation of local anodic oxidation on a silicon sample (biased under opposite polarities), an effect that can be suppressed by measuring in a dry nitrogen atmosphere. The usefulness of this chamber goes beyond the example here presented, and it could be used in many other fields of science, including physics, mechanics, microelectronics, nanotechnology, medicine, and biology.
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Affiliation(s)
- Yanfeng Ji
- Institute of Functional Nano & Soft Materials, Soochow University, Collaborative Innovation Center of Suzhou Nano Science & Technology, 199 Ren-Ai Road, Suzhou 215123, China
| | - Fei Hui
- Institute of Functional Nano & Soft Materials, Soochow University, Collaborative Innovation Center of Suzhou Nano Science & Technology, 199 Ren-Ai Road, Suzhou 215123, China
| | - Yuanyuan Shi
- Institute of Functional Nano & Soft Materials, Soochow University, Collaborative Innovation Center of Suzhou Nano Science & Technology, 199 Ren-Ai Road, Suzhou 215123, China
| | - Tingting Han
- Institute of Functional Nano & Soft Materials, Soochow University, Collaborative Innovation Center of Suzhou Nano Science & Technology, 199 Ren-Ai Road, Suzhou 215123, China
| | - Xiaoxue Song
- Institute of Functional Nano & Soft Materials, Soochow University, Collaborative Innovation Center of Suzhou Nano Science & Technology, 199 Ren-Ai Road, Suzhou 215123, China
| | - Chengbin Pan
- Institute of Functional Nano & Soft Materials, Soochow University, Collaborative Innovation Center of Suzhou Nano Science & Technology, 199 Ren-Ai Road, Suzhou 215123, China
| | - Mario Lanza
- Institute of Functional Nano & Soft Materials, Soochow University, Collaborative Innovation Center of Suzhou Nano Science & Technology, 199 Ren-Ai Road, Suzhou 215123, China
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171
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Patil SB, Vögtli M, Webb B, Mazza G, Pinzani M, Soh YA, McKendry RA, Ndieyira JW. Decoupling competing surface binding kinetics and reconfiguration of receptor footprint for ultrasensitive stress assays. NATURE NANOTECHNOLOGY 2015; 10:899-907. [PMID: 26280409 DOI: 10.1038/nnano.2015.174] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/15/2014] [Accepted: 07/06/2015] [Indexed: 05/27/2023]
Abstract
Cantilever arrays have been used to monitor biochemical interactions and their associated stress. However, it is often necessary to passivate the underside of the cantilever to prevent unwanted ligand adsorption, and this process requires tedious optimization. Here, we show a way to immobilize membrane receptors on nanomechanical cantilevers so that they can function without passivating the underlying surface. Using equilibrium theory, we quantitatively describe the mechanical responses of vancomycin, human immunodeficiency virus type 1 antigens and coagulation factor VIII captured on the cantilever in the presence of competing stresses from the top and bottom cantilever surfaces. We show that the area per receptor molecule on the cantilever surface influences ligand-receptor binding and plays an important role on stress. Our results offer a new way to sense biomolecules and will aid in the creation of ultrasensitive biosensors.
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Affiliation(s)
- Samadhan B Patil
- London Centre for Nanotechnology and Departments of Medicine and Physics, University College London, 17-19 Gordon Street, London WC1H 0AH, UK
- Department of Materials, Imperial College London, London SW7 2AZ, UK
| | - Manuel Vögtli
- London Centre for Nanotechnology and Departments of Medicine and Physics, University College London, 17-19 Gordon Street, London WC1H 0AH, UK
| | - Benjamin Webb
- London Centre for Nanotechnology and Departments of Medicine and Physics, University College London, 17-19 Gordon Street, London WC1H 0AH, UK
- Division of Infection &Immunity, University College London, Cruciform Building, Gower Street, London WC1E 6BT, UK
| | - Giuseppe Mazza
- UCL Institute for Liver and Digestive Health, Royal Free Hospital, London NW3 2QG, UK
| | - Massimo Pinzani
- UCL Institute for Liver and Digestive Health, Royal Free Hospital, London NW3 2QG, UK
| | - Yeong-Ah Soh
- Department of Materials, Imperial College London, London SW7 2AZ, UK
| | - Rachel A McKendry
- London Centre for Nanotechnology and Departments of Medicine and Physics, University College London, 17-19 Gordon Street, London WC1H 0AH, UK
| | - Joseph W Ndieyira
- London Centre for Nanotechnology and Departments of Medicine and Physics, University College London, 17-19 Gordon Street, London WC1H 0AH, UK
- Department of Chemistry, Jomo Kenyatta University of Agriculture and Technology, PO Box 62000, Nairobi, Kenya
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172
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Wu S, Liu X, Zhou X, Liang XM, Gao D, Liu H, Zhao G, Zhang Q, Wu X. Quantification of cell viability and rapid screening anti-cancer drug utilizing nanomechanical fluctuation. Biosens Bioelectron 2015; 77:164-73. [PMID: 26406457 DOI: 10.1016/j.bios.2015.09.024] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2015] [Revised: 08/31/2015] [Accepted: 09/10/2015] [Indexed: 11/27/2022]
Abstract
Cancer is a serious threat to human health. Although numerous anti-cancer drugs are available clinically, many have shown toxic side effects due to poor tumor-selectivity, and reduced effectiveness due to cancers rapid development of resistance to treatment. The development of new highly efficient and practical methods to quantify cell viability and its change under drug treatment is thus of significant importance in both understanding of anti-cancer mechanism and anti-cancer drug screening. Here, we present an approach of utilizing a nanomechanical fluctuation based highly sensitive microcantilever sensor, which is capable of characterizing the viability of cells and quantitatively screening (within tens of minutes) their responses to a drug with the obvious advantages of a rapid, label-free, quantitative, noninvasive, real-time and in-situ assay. The microcantilever sensor operated in fluctuation mode was used in evaluating the paclitaxel effectiveness on breast cancer cell line MCF-7. This study demonstrated that the nanomechanical fluctuations of the microcantilever sensor are sensitive enough to detect the dynamic variation in cellular force which is provided by the cytoskeleton, using cell metabolism as its energy source, and the dynamic instability of microtubules plays an important role in the generation of the force. We propose that cell viability consists of two parts: biological viability and mechanical viability. Our experimental results suggest that paclitaxel has little effect on biological viability, but has a significant effect on mechanical viability. This new method provides a new concept and strategy for the evaluation of cell viability and the screening of anti-cancer drugs.
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Affiliation(s)
- Shangquan Wu
- CAS Key Laboratory of Mechanical Behavior and Design of Material, Department of Modern Mechanics, University of Science and Technology of China, Hefei 230027, China; Center for Biomedical Engineering, University of Science and Technology of China, Hefei 230026, China
| | - Xiaoli Liu
- Department of Electronic Science and Technology, University of Science and Technology of China, Hefei 230026, China; Center for Biomedical Engineering, University of Science and Technology of China, Hefei 230026, China
| | - Xiarong Zhou
- CAS Key Laboratory of Mechanical Behavior and Design of Material, Department of Modern Mechanics, University of Science and Technology of China, Hefei 230027, China
| | - Xin M Liang
- Center for Biomedical Engineering, University of Science and Technology of China, Hefei 230026, China
| | - Dayong Gao
- Department of Mechanical Engineering, University of Washington, Seattle, WA 98195, USA
| | - Hong Liu
- Department of Chemical Physics, University of Science and Technology of China, Hefei 230026, China.
| | - Gang Zhao
- Department of Electronic Science and Technology, University of Science and Technology of China, Hefei 230026, China; Center for Biomedical Engineering, University of Science and Technology of China, Hefei 230026, China.
| | - Qingchuan Zhang
- CAS Key Laboratory of Mechanical Behavior and Design of Material, Department of Modern Mechanics, University of Science and Technology of China, Hefei 230027, China; Center for Biomedical Engineering, University of Science and Technology of China, Hefei 230026, China.
| | - Xiaoping Wu
- CAS Key Laboratory of Mechanical Behavior and Design of Material, Department of Modern Mechanics, University of Science and Technology of China, Hefei 230027, China
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173
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Subbiah R, Jeon SB, Park K, Ahn SJ, Yun K. Investigation of cellular responses upon interaction with silver nanoparticles. Int J Nanomedicine 2015; 10 Spec Iss:191-201. [PMID: 26346562 PMCID: PMC4556294 DOI: 10.2147/ijn.s88508] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
Abstract
In order for nanoparticles (NPs) to be applied in the biomedical field, a thorough investigation of their interactions with biological systems is required. Although this is a growing area of research, there is a paucity of comprehensive data in cell-based studies. To address this, we analyzed the physicomechanical responses of human alveolar epithelial cells (A549), mouse fibroblasts (NIH3T3), and human bone marrow stromal cells (HS-5), following their interaction with silver nanoparticles (AgNPs). When compared with kanamycin, AgNPs exhibited moderate antibacterial activity. Cell viability ranged from ≤80% at a high AgNPs dose (40 µg/mL) to >95% at a low dose (10 µg/mL). We also used atomic force microscopy-coupled force spectroscopy to evaluate the biophysical and biomechanical properties of cells. This revealed that AgNPs treatment increased the surface roughness (P<0.001) and stiffness (P<0.001) of cells. Certain cellular changes are likely due to interaction of the AgNPs with the cell surface. The degree to which cellular morphology was altered directly proportional to the level of AgNP-induced cytotoxicity. Together, these data suggest that atomic force microscopy can be used as a potential tool to develop a biomechanics-based biomarker for the evaluation of NP-dependent cytotoxicity and cytopathology.
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Affiliation(s)
- Ramesh Subbiah
- Center for Biomaterials, Korea Institute of Science and Technology, Seoul, Republic of Korea ; Department of Biomedical Engineering, Korea University of Science and Technology, Daejon, Republic of Korea
| | - Seong Beom Jeon
- Department of Bionanotechnology, Gachon University, Gyeonggi-do, Republic of Korea ; Centre for Advanced Instrumentation, Korea Research Institute of Standard and Science, Korea University of Science and Technology, Daejeon, Republic of Korea
| | - Kwideok Park
- Center for Biomaterials, Korea Institute of Science and Technology, Seoul, Republic of Korea ; Department of Biomedical Engineering, Korea University of Science and Technology, Daejon, Republic of Korea
| | - Sang Jung Ahn
- Centre for Advanced Instrumentation, Korea Research Institute of Standard and Science, Korea University of Science and Technology, Daejeon, Republic of Korea ; Major of Nano Science, Korea University of Science and Technology, Daejeon, Republic of Korea
| | - Kyusik Yun
- Department of Bionanotechnology, Gachon University, Gyeonggi-do, Republic of Korea
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174
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Besant JD, Sargent EH, Kelley SO. Rapid electrochemical phenotypic profiling of antibiotic-resistant bacteria. LAB ON A CHIP 2015; 15:2799-807. [PMID: 26008802 DOI: 10.1039/c5lc00375j] [Citation(s) in RCA: 72] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
Abstract
Rapid phenotyping of bacteria to identify drug-resistant strains is an important capability for the treatment and management of infectious disease. At present, the rapid determination of antibiotic susceptibility is hindered by the requirement that, in existing devices, bacteria must be pre-cultured for 2-3 days to reach detectable levels. Here we report a novel electrochemical approach that achieves rapid readout of the antibiotic susceptibility profile of a bacterial infection within one hour. The electrochemical reduction of a redox-active molecule is monitored that reports on levels of metabolically-active bacteria. Bacteria are captured in miniaturized wells, incubated with antimicrobials and monitored for resistance. This electrochemical phenotyping approach is effective with clinically-relevant levels of bacteria, and provides results comparable to culture-based analysis. Results, however, are delivered on a much faster timescale, with resistance profiles available after a one hour incubation period.
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Affiliation(s)
- Justin D Besant
- Institute for Biomaterials and Biomedical Engineering, University of Toronto, Toronto, ON M5S 3G9, Canada.
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175
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Nanoscale monitoring of drug actions on cell membrane using atomic force microscopy. Acta Pharmacol Sin 2015; 36:769-82. [PMID: 26027658 DOI: 10.1038/aps.2015.28] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2014] [Accepted: 03/13/2015] [Indexed: 02/06/2023] Open
Abstract
Knowledge of the nanoscale changes that take place in individual cells in response to a drug is useful for understanding the drug action. However, due to the lack of adequate techniques, such knowledge was scarce until the advent of atomic force microscopy (AFM), which is a multifunctional tool for investigating cellular behavior with nanometer resolution under near-physiological conditions. In the past decade, researchers have applied AFM to monitor the morphological and mechanical dynamics of individual cells following drug stimulation, yielding considerable novel insight into how the drug molecules affect an individual cell at the nanoscale. In this article we summarize the representative applications of AFM in characterization of drug actions on cell membrane, including topographic imaging, elasticity measurements, molecular interaction quantification, native membrane protein imaging and manipulation, etc. The challenges that are hampering the further development of AFM for studies of cellular activities are aslo discussed.
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176
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Pump-free gradient-based micro-device enables quantitative and high-throughput bacterial growth inhibition analysis. Biomed Microdevices 2015; 17:67. [DOI: 10.1007/s10544-015-9971-8] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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177
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Kasas S, Stupar P, Longo G, Dietler G. [Detecting life thanks to the atomic force microscope]. Med Sci (Paris) 2015; 31:369-71. [PMID: 25958752 DOI: 10.1051/medsci/20153104008] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Sandor Kasas
- Laboratoire de physique de la matière vivante, école polytechnique fédérale de Lausanne, EPFL-IPSB-LPMV, BSP/Cubotron 414, CH-1015 Lausanne, Suisse - Département de neurobiologie fondamentale, université de Lausanne, CH-1005 Lausanne, Suisse
| | - Petar Stupar
- Laboratoire de physique de la matière vivante, école polytechnique fédérale de Lausanne, EPFL-IPSB-LPMV, BSP/Cubotron 414, CH-1015 Lausanne, Suisse
| | - Giovanni Longo
- Laboratoire de physique de la matière vivante, école polytechnique fédérale de Lausanne, EPFL-IPSB-LPMV, BSP/Cubotron 414, CH-1015 Lausanne, Suisse
| | - Giovanni Dietler
- Laboratoire de physique de la matière vivante, école polytechnique fédérale de Lausanne, EPFL-IPSB-LPMV, BSP/Cubotron 414, CH-1015 Lausanne, Suisse
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178
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Putrino G, Martyniuk M, Keating A, Faraone L, Dell J. On-chip read-out of picomechanical motion under ambient conditions. NANOSCALE 2015; 7:1927-1933. [PMID: 25529834 DOI: 10.1039/c4nr05419a] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Monitoring the nanomechanical movement of suspended cantilever structures has found use in applications ranging from biological/chemical sensing to atomic force microscopy. Interrogating these sensors relies on the ability to accurately determine the sub-nanometre movements of the cantilever. Here we investigate a technique based on the combination of integrated silicon photonics and microelectromechanical systems (MEMS) to create an optically resonant microcavity and demonstrate its use for monitoring of the position of cantilevers on the picometer scale under ambient conditions with dynamic range extending over several microns. The technique is interferometric, and we show it to be sufficiently sensitive to measure both the first and second modes of cantilever Brownian motion. We anticipate that application of this technique will provide a physically robust, picometer precision, integrated cantilever movement read-out technology which can take cantilever sensors from laboratory controlled environments into real world conditions, allowing everyday applications.
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Affiliation(s)
- Gino Putrino
- The University of Western Australia, School of Electrical, Electronic and Computer Engineering, University of Western Australia, Perth, WA 6009, Australia.
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179
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Domínguez CM, Kosaka PM, Sotillo A, Mingorance J, Tamayo J, Calleja M. Label-Free DNA-Based Detection of Mycobacterium tuberculosis and Rifampicin Resistance through Hydration Induced Stress in Microcantilevers. Anal Chem 2015; 87:1494-8. [DOI: 10.1021/ac504523f] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Affiliation(s)
- Carmen M. Domínguez
- IMM-Instituto de Microelectrónica de Madrid (CNM-CSIC), Isaac Newton 8, PTM, E-28760 Tres
Cantos, Madrid, Spain
| | - Priscila M. Kosaka
- IMM-Instituto de Microelectrónica de Madrid (CNM-CSIC), Isaac Newton 8, PTM, E-28760 Tres
Cantos, Madrid, Spain
| | - Alma Sotillo
- Servicio
de Microbiología, Hospital Universitario La Paz, IdiPAZ, Paseo de la Castellana,
261, 28046 Madrid, Spain
| | - Jesús Mingorance
- Servicio
de Microbiología, Hospital Universitario La Paz, IdiPAZ, Paseo de la Castellana,
261, 28046 Madrid, Spain
| | - Javier Tamayo
- IMM-Instituto de Microelectrónica de Madrid (CNM-CSIC), Isaac Newton 8, PTM, E-28760 Tres
Cantos, Madrid, Spain
| | - Montserrat Calleja
- IMM-Instituto de Microelectrónica de Madrid (CNM-CSIC), Isaac Newton 8, PTM, E-28760 Tres
Cantos, Madrid, Spain
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180
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Vitorino MV, Carpentier S, Panzarella A, Rodrigues MS, Costa L. Giant resonance tuning of micro and nanomechanical oscillators. Sci Rep 2015; 5:7818. [PMID: 25588846 PMCID: PMC4295088 DOI: 10.1038/srep07818] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2014] [Accepted: 12/09/2014] [Indexed: 12/02/2022] Open
Abstract
We present a method to tune the resonance frequency and the Q-factor of micro and nano-metric mechanical oscillators. A counteracting loop drives a capacitive force applied to the oscillator. The proportional and differential gains are used to shift the resonance frequency up to 75% and to tune the Q-factor of the oscillator, by changing its effective stiffness and damping ratio. The oscillator position is monitored in a large bandwidth with a fiber-optic based interferometer. We applied this simple operational scheme with different oscillators for modifying easily their dynamical properties. Compared to alternative methods requiring external fields, our method can either increase or decrease the resonance frequency in a frequency range much more extended. This opens up a wide range of applications, from force sensors with extremely low elastic constants but high quality factor to tunable energy harvesters or to high-frequency tuning of radio frequency filters. The control scheme can work in different media, and is then suitable to be applied to biological sensors and actuators.
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Affiliation(s)
- Miguel V Vitorino
- 1] European Synchrotron Radiation Facility, 71 Rue des Martyrs, 38000 Grenoble, France [2] CFMC/Dep. Física, Faculdade de Ciência, Universidade de Lisboa, Campo Grande, 1749-016 Lisboa, Portugal
| | - Simon Carpentier
- 1] Université Joseph Fourier BP 53, 38041 Grenoble Cedex 9, France [2] Université Grenoble Alpes, Inst NEEL, F-38042 Grenoble, France
| | - Alain Panzarella
- European Synchrotron Radiation Facility, 71 Rue des Martyrs, 38000 Grenoble, France
| | - Mario S Rodrigues
- CFMC/Dep. Física, Faculdade de Ciência, Universidade de Lisboa, Campo Grande, 1749-016 Lisboa, Portugal
| | - Luca Costa
- European Synchrotron Radiation Facility, 71 Rue des Martyrs, 38000 Grenoble, France
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181
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Kasas S, Ruggeri FS, Benadiba C, Maillard C, Stupar P, Tournu H, Dietler G, Longo G. Detecting nanoscale vibrations as signature of life. Proc Natl Acad Sci U S A 2015; 112:378-81. [PMID: 25548177 PMCID: PMC4299216 DOI: 10.1073/pnas.1415348112] [Citation(s) in RCA: 86] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
The existence of life in extreme conditions, in particular in extraterrestrial environments, is certainly one of the most intriguing scientific questions of our time. In this report, we demonstrate the use of an innovative nanoscale motion sensor in life-searching experiments in Earth-bound and interplanetary missions. This technique exploits the sensitivity of nanomechanical oscillators to transduce the small fluctuations that characterize living systems. The intensity of such movements is an indication of the viability of living specimens and conveys information related to their metabolic activity. Here, we show that the nanomotion detector can assess the viability of a vast range of biological specimens and that it could be the perfect complement to conventional chemical life-detection assays. Indeed, by combining chemical and dynamical measurements, we could achieve an unprecedented depth in the characterization of life in extreme and extraterrestrial environments.
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Affiliation(s)
- Sandor Kasas
- Laboratoire de Physique de la Matière Vivante, Institut de Physique des Systèmes Biologiques, Facultè des Sciences des Base, École Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland; Département des Neurosciences Fondamentales, Faculté de Biologie et de Médecine, Université de Lausanne, 1005 Lausanne, Switzerland; and
| | - Francesco Simone Ruggeri
- Laboratoire de Physique de la Matière Vivante, Institut de Physique des Systèmes Biologiques, Facultè des Sciences des Base, École Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland
| | - Carine Benadiba
- Laboratoire de Physique de la Matière Vivante, Institut de Physique des Systèmes Biologiques, Facultè des Sciences des Base, École Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland
| | - Caroline Maillard
- Laboratoire de Physique de la Matière Vivante, Institut de Physique des Systèmes Biologiques, Facultè des Sciences des Base, École Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland
| | - Petar Stupar
- Laboratoire de Physique de la Matière Vivante, Institut de Physique des Systèmes Biologiques, Facultè des Sciences des Base, École Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland
| | - Hélène Tournu
- Department of Molecular Microbiology, Vlaams Instituut voor Biotechnologie (VIB), B-3001 Leuven, Belgium
| | - Giovanni Dietler
- Laboratoire de Physique de la Matière Vivante, Institut de Physique des Systèmes Biologiques, Facultè des Sciences des Base, École Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland
| | - Giovanni Longo
- Laboratoire de Physique de la Matière Vivante, Institut de Physique des Systèmes Biologiques, Facultè des Sciences des Base, École Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland;
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182
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Mi Li, Lianqing Liu, Ning Xi, Yuechao Wang, Xiubin Xiao, Weijing Zhang. Quantitative Analysis of Drug-Induced Complement-Mediated Cytotoxic Effect on Single Tumor Cells Using Atomic Force Microscopy and Fluorescence Microscopy. IEEE Trans Nanobioscience 2015; 14:84-94. [DOI: 10.1109/tnb.2014.2370759] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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183
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Affiliation(s)
- Giovanni Longo
- Laboratoire de Physique de la Matière Vivante, Ecole Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
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184
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Kosaka PM, Pini V, Ruz JJ, da Silva RA, González MU, Ramos D, Calleja M, Tamayo J. Detection of cancer biomarkers in serum using a hybrid mechanical and optoplasmonic nanosensor. NATURE NANOTECHNOLOGY 2014; 9:1047-53. [PMID: 25362477 DOI: 10.1038/nnano.2014.250] [Citation(s) in RCA: 133] [Impact Index Per Article: 13.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/09/2014] [Accepted: 09/30/2014] [Indexed: 05/24/2023]
Abstract
Blood contains a range of protein biomarkers that could be used in the early detection of disease. To achieve this, however, requires sensors capable of detecting (with high reproducibility) biomarkers at concentrations one million times lower than the concentration of the other blood proteins. Here, we show that a sandwich assay that combines mechanical and optoplasmonic transduction can detect cancer biomarkers in serum at ultralow concentrations. A biomarker is first recognized by a surface-anchored antibody and then by an antibody in solution that identifies a free region of the captured biomarker. This second antibody is tethered to a gold nanoparticle that acts as a mass and plasmonic label; the two signatures are detected by means of a silicon cantilever that serves as a mechanical resonator for 'weighing' the mass of the captured nanoparticles and as an optical cavity that boosts the plasmonic signal from the nanoparticles. The capabilities of the approach are illustrated with two cancer biomarkers: the carcinoembryonic antigen and the prostate specific antigen, which are currently in clinical use for the diagnosis, monitoring and prognosis of colon and prostate cancer, respectively. A detection limit of 1 × 10(-16) g ml(-1) in serum is achieved with both biomarkers, which is at least seven orders of magnitude lower than that achieved in routine clinical practice. Moreover, the rate of false positives and false negatives at this concentration is extremely low, ∼10(-4).
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Affiliation(s)
- P M Kosaka
- IMM-Instituto de Microelectrónica de Madrid (CNM-CSIC), Isaac Newton 8, PTM, E-28760 Tres Cantos, Madrid, Spain
| | - V Pini
- IMM-Instituto de Microelectrónica de Madrid (CNM-CSIC), Isaac Newton 8, PTM, E-28760 Tres Cantos, Madrid, Spain
| | - J J Ruz
- IMM-Instituto de Microelectrónica de Madrid (CNM-CSIC), Isaac Newton 8, PTM, E-28760 Tres Cantos, Madrid, Spain
| | - R A da Silva
- 1] IMM-Instituto de Microelectrónica de Madrid (CNM-CSIC), Isaac Newton 8, PTM, E-28760 Tres Cantos, Madrid, Spain [2] Instituto de Química, Universidade de Sao Paulo, Av. Prof. Lineu Prestes 748, 05508-900 Sao Paulo, Brazil
| | - M U González
- IMM-Instituto de Microelectrónica de Madrid (CNM-CSIC), Isaac Newton 8, PTM, E-28760 Tres Cantos, Madrid, Spain
| | - D Ramos
- IMM-Instituto de Microelectrónica de Madrid (CNM-CSIC), Isaac Newton 8, PTM, E-28760 Tres Cantos, Madrid, Spain
| | - M Calleja
- IMM-Instituto de Microelectrónica de Madrid (CNM-CSIC), Isaac Newton 8, PTM, E-28760 Tres Cantos, Madrid, Spain
| | - J Tamayo
- IMM-Instituto de Microelectrónica de Madrid (CNM-CSIC), Isaac Newton 8, PTM, E-28760 Tres Cantos, Madrid, Spain
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185
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Kang DK, Ali MM, Zhang K, Huang SS, Peterson E, Digman MA, Gratton E, Zhao W. Rapid detection of single bacteria in unprocessed blood using Integrated Comprehensive Droplet Digital Detection. Nat Commun 2014; 5:5427. [PMID: 25391809 PMCID: PMC4243214 DOI: 10.1038/ncomms6427] [Citation(s) in RCA: 221] [Impact Index Per Article: 22.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2014] [Accepted: 09/30/2014] [Indexed: 01/08/2023] Open
Abstract
Blood stream infection or sepsis is a major health problem worldwide, with extremely high mortality, which is partly due to the inability to rapidly detect and identify bacteria in the early stages of infection. Here we present a new technology termed 'Integrated Comprehensive Droplet Digital Detection' (IC 3D) that can selectively detect bacteria directly from milliliters of diluted blood at single-cell sensitivity in a one-step, culture- and amplification-free process within 1.5-4 h. The IC 3D integrates real-time, DNAzyme-based sensors, droplet microencapsulation and a high-throughput 3D particle counter system. Using Escherichia coli as a target, we demonstrate that the IC 3D can provide absolute quantification of both stock and clinical isolates of E. coli in spiked blood within a broad range of extremely low concentration from 1 to 10,000 bacteria per ml with exceptional robustness and limit of detection in the single digit regime.
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Affiliation(s)
- Dong-Ku Kang
- Department of Pharmaceutical Sciences, University of California–Irvine, 845 Health Sciences Road, Irvine, California 92697, USA
- Sue and Bill Gross Stem Cell Research Center, University of California–Irvine, 845 Health Sciences Road, Irvine, California 92697, USA
- Chao Family Comprehensive Cancer Center, University of California–Irvine, 845 Health Sciences Road, Irvine, California 92697, USA
- Edwards Lifesciences Center for Advanced Cardiovascular Technology, University of California–Irvine, 845 Health Sciences Road, Irvine, California 92697, USA
- Department of Biomedical Engineering, University of California–Irvine, 845 Health Sciences Road, Irvine, California 92697, USA
| | - M. Monsur Ali
- Department of Pharmaceutical Sciences, University of California–Irvine, 845 Health Sciences Road, Irvine, California 92697, USA
- Sue and Bill Gross Stem Cell Research Center, University of California–Irvine, 845 Health Sciences Road, Irvine, California 92697, USA
- Chao Family Comprehensive Cancer Center, University of California–Irvine, 845 Health Sciences Road, Irvine, California 92697, USA
- Edwards Lifesciences Center for Advanced Cardiovascular Technology, University of California–Irvine, 845 Health Sciences Road, Irvine, California 92697, USA
- Department of Biomedical Engineering, University of California–Irvine, 845 Health Sciences Road, Irvine, California 92697, USA
| | - Kaixiang Zhang
- Department of Pharmaceutical Sciences, University of California–Irvine, 845 Health Sciences Road, Irvine, California 92697, USA
- Sue and Bill Gross Stem Cell Research Center, University of California–Irvine, 845 Health Sciences Road, Irvine, California 92697, USA
- Chao Family Comprehensive Cancer Center, University of California–Irvine, 845 Health Sciences Road, Irvine, California 92697, USA
- Edwards Lifesciences Center for Advanced Cardiovascular Technology, University of California–Irvine, 845 Health Sciences Road, Irvine, California 92697, USA
- Department of Biomedical Engineering, University of California–Irvine, 845 Health Sciences Road, Irvine, California 92697, USA
- Department of Chemistry, Beijing Key Laboratory for Analytical Methods and Instrumentation, Tsinghua University, Beijing 100084, China
| | - Susan S. Huang
- Division of Infectious Diseases and Health Policy Research Institute, School of Medicine, University of California–Irvine, Irvine, California 92697, USA
| | - Ellena Peterson
- Department of Pathology and Laboratory Medicine, University of California, Irvine, California 92697, USA
| | - Michelle A. Digman
- Department of Biomedical Engineering, University of California–Irvine, 845 Health Sciences Road, Irvine, California 92697, USA
- Laboratory for Fluorescence Dynamics, University of California, Irvine, California 92697, USA
- Centre for Bioactive Discovery in Health and Ageing, School of Science and Technology, University of New England, Armidale, New South Wales 2351, Australia
| | - Enrico Gratton
- Department of Biomedical Engineering, University of California–Irvine, 845 Health Sciences Road, Irvine, California 92697, USA
- Laboratory for Fluorescence Dynamics, University of California, Irvine, California 92697, USA
| | - Weian Zhao
- Department of Pharmaceutical Sciences, University of California–Irvine, 845 Health Sciences Road, Irvine, California 92697, USA
- Sue and Bill Gross Stem Cell Research Center, University of California–Irvine, 845 Health Sciences Road, Irvine, California 92697, USA
- Chao Family Comprehensive Cancer Center, University of California–Irvine, 845 Health Sciences Road, Irvine, California 92697, USA
- Edwards Lifesciences Center for Advanced Cardiovascular Technology, University of California–Irvine, 845 Health Sciences Road, Irvine, California 92697, USA
- Department of Biomedical Engineering, University of California–Irvine, 845 Health Sciences Road, Irvine, California 92697, USA
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186
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Tian Y, Navarro P, Orrit M. Single molecule as a local acoustic detector for mechanical oscillators. PHYSICAL REVIEW LETTERS 2014; 113:135505. [PMID: 25302904 DOI: 10.1103/physrevlett.113.135505] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2014] [Indexed: 06/04/2023]
Abstract
A single molecule can serve as a nanometer-sized detector of acoustic strain. Such a nanomicrophone has the great advantage that it can be placed very close to acoustic signal sources and high sensitivities can be achieved. We demonstrate this scheme by monitoring the fluorescence intensity of a single dibenzoterrylene molecule in an anthracene crystal attached to an oscillating tuning fork. The characterization of the vibration amplitude and of the detection sensitivity is a first step towards detection and control of nanomechanical oscillators through optical detection and feedback.
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Affiliation(s)
- Yuxi Tian
- MoNOS, Huygens-Kamerlingh Onnes Laboratory, Universiteit Leiden, 2300 RA Leiden, Netherlands
| | - Pedro Navarro
- MoNOS, Huygens-Kamerlingh Onnes Laboratory, Universiteit Leiden, 2300 RA Leiden, Netherlands
| | - Michel Orrit
- MoNOS, Huygens-Kamerlingh Onnes Laboratory, Universiteit Leiden, 2300 RA Leiden, Netherlands
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187
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Lissandrello C, Inci F, Francom M, Paul MR, Demirci U, Ekinci KL. Nanomechanical motion of Escherichia coli adhered to a surface. APPLIED PHYSICS LETTERS 2014; 105:113701. [PMID: 25316924 PMCID: PMC4187256 DOI: 10.1063/1.4895132] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2014] [Accepted: 08/28/2014] [Indexed: 05/08/2023]
Abstract
Nanomechanical motion of bacteria adhered to a chemically functionalized silicon surface is studied by means of a microcantilever. A non-specific binding agent is used to attach Escherichia coli (E. coli) to the surface of a silicon microcantilever. The microcantilever is kept in a liquid medium, and its nanomechanical fluctuations are monitored using an optical displacement transducer. The motion of the bacteria couples efficiently to the microcantilever well below its resonance frequency, causing a measurable increase in the microcantilever fluctuations. In the time domain, the fluctuations exhibit large-amplitude low-frequency oscillations. In corresponding frequency-domain measurements, it is observed that the mechanical energy is focused at low frequencies with a 1/fα -type power law. A basic physical model is used for explaining the observed spectral distribution of the mechanical energy. These results lay the groundwork for understanding the motion of microorganisms adhered to surfaces and for developing micromechanical sensors for bacteria.
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Affiliation(s)
- C Lissandrello
- Department of Mechanical Engineering, Division of Materials Science and Engineering, and the Photonics Center, Boston University , Boston, Massachusetts 02215, USA
| | - F Inci
- Demirci Bio-Acoustic-MEMS in Medicine (BAMM) Laboratory, Canary Center at Stanford for Cancer Early Detection, Stanford University School of Medicine , Palo Alto, California 94304, USA
| | - M Francom
- Department of Mechanical Engineering, Virginia Polytechnic Institute and State University , Blacksburg, Virginia 24061, USA
| | - M R Paul
- Department of Mechanical Engineering, Virginia Polytechnic Institute and State University , Blacksburg, Virginia 24061, USA
| | - U Demirci
- Demirci Bio-Acoustic-MEMS in Medicine (BAMM) Laboratory, Canary Center at Stanford for Cancer Early Detection, Stanford University School of Medicine , Palo Alto, California 94304, USA
| | - K L Ekinci
- Department of Mechanical Engineering, Division of Materials Science and Engineering, and the Photonics Center, Boston University , Boston, Massachusetts 02215, USA
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188
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Song L, Sjollema J, Sharma PK, Kaper HJ, van der Mei HC, Busscher HJ. Nanoscopic vibrations of bacteria with different cell-wall properties adhering to surfaces under flow and static conditions. ACS NANO 2014; 8:8457-67. [PMID: 25025495 DOI: 10.1021/nn5030253] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
Bacteria adhering to surfaces demonstrate random, nanoscopic vibrations around their equilibrium positions. This paper compares vibrational amplitudes of bacteria adhering to glass. Spring constants of the bond are derived from vibrational amplitudes and related to the electrophoretic softness of the cell surfaces and dissipation shifts measured upon bacterial adhesion in a quartz-crystal-microbalance (QCM-D). Experiments were conducted with six bacterial strains with pairwise differences in cell surface characteristics. Vibrational amplitudes were highest in low ionic strength suspensions. Under fluid flow, vibrational amplitudes were lower in the direction of flow than perpendicular to it because stretching of cell surface polymers in the direction of flow causes stiffening of the polyelectrolyte network surrounding a bacterium. Under static conditions (0.57 mM), vibrational amplitudes of fibrillated Streptococcus salivarius HB7 (145 nm) were higher than that of a bald mutant HB-C12 (76 nm). Amplitudes of moderately extracellular polymeric substance (EPS) producing Staphylococcus epidermidis ATCC35983 (47 nm) were more than twice the amplitudes of strongly EPS producing S. epidermidis ATCC35984 (21 nm). No differences were found between Staphylococcus aureus strains differing in membrane cross-linking. High vibrational amplitudes corresponded with low dissipation shifts in QCM-D. In streptococci, the polyelectrolyte network surrounding a bacterium is formed by fibrillar surface appendages and spring constants derived from vibrational amplitudes decreased with increasing fibrillar density. In staphylococci, EPS constitutes the main network component, and larger amounts of EPS yielded higher spring constants. Spring constants increased with increasing ionic strength and strains with smaller electrophoretically derived bacterial cell surface softnesses possessed the highest spring constants.
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Affiliation(s)
- Lei Song
- Department of Biomedical Engineering, University of Groningen and University Medical Center Groningen , Antonius Deusinglaan 1, 9713 AV Groningen, The Netherlands
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189
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Li M, Liu L, Xi N, Wang Y. Research progress in quantifying the mechanical properties of single living cells using atomic force microscopy. ACTA ACUST UNITED AC 2014. [DOI: 10.1007/s11434-014-0581-2] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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190
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Alonso-Sarduy L, De Los Rios P, Benedetti F, Vobornik D, Dietler G, Kasas S, Longo G. Real-time monitoring of protein conformational changes using a nano-mechanical sensor. PLoS One 2014; 9:e103674. [PMID: 25077809 PMCID: PMC4117498 DOI: 10.1371/journal.pone.0103674] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2014] [Accepted: 07/01/2014] [Indexed: 11/24/2022] Open
Abstract
Proteins can switch between different conformations in response to stimuli, such as pH or temperature variations, or to the binding of ligands. Such plasticity and its kinetics can have a crucial functional role, and their characterization has taken center stage in protein research. As an example, Topoisomerases are particularly interesting enzymes capable of managing tangled and supercoiled double-stranded DNA, thus facilitating many physiological processes. In this work, we describe the use of a cantilever-based nanomotion sensor to characterize the dynamics of human topoisomerase II (Topo II) enzymes and their response to different kinds of ligands, such as ATP, which enhance the conformational dynamics. The sensitivity and time resolution of this sensor allow determining quantitatively the correlation between the ATP concentration and the rate of Topo II conformational changes. Furthermore, we show how to rationalize the experimental results in a comprehensive model that takes into account both the physics of the cantilever and the dynamics of the ATPase cycle of the enzyme, shedding light on the kinetics of the process. Finally, we study the effect of aclarubicin, an anticancer drug, demonstrating that it affects directly the Topo II molecule inhibiting its conformational changes. These results pave the way to a new way of studying the intrinsic dynamics of proteins and of protein complexes allowing new applications ranging from fundamental proteomics to drug discovery and development and possibly to clinical practice.
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Affiliation(s)
- Livan Alonso-Sarduy
- Laboratory of Physics of Living Matter, Institute of Physics of Biological Systems, School of Basic Sciences, École polytechnique fédérale de Lausanne, Lausanne, Switzerland
| | - Paolo De Los Rios
- Laboratory of Statistical Biophysics, Institute of Theoretical Physics, School of Basic Sciences, École polytechnique fédérale de Lausanne, Lausanne, Switzerland
| | - Fabrizio Benedetti
- Laboratory of Physics of Living Matter, Institute of Physics of Biological Systems, School of Basic Sciences, École polytechnique fédérale de Lausanne, Lausanne, Switzerland
| | - Dusan Vobornik
- Laboratory of Physics of Living Matter, Institute of Physics of Biological Systems, School of Basic Sciences, École polytechnique fédérale de Lausanne, Lausanne, Switzerland
| | - Giovanni Dietler
- Laboratory of Physics of Living Matter, Institute of Physics of Biological Systems, School of Basic Sciences, École polytechnique fédérale de Lausanne, Lausanne, Switzerland
| | - Sandor Kasas
- Laboratory of Physics of Living Matter, Institute of Physics of Biological Systems, School of Basic Sciences, École polytechnique fédérale de Lausanne, Lausanne, Switzerland
- Faculty of Biology and Medicine, Department of Fundamental Neurosciences, Lausanne University, Lausanne, Switzerland
| | - Giovanni Longo
- Laboratory of Physics of Living Matter, Institute of Physics of Biological Systems, School of Basic Sciences, École polytechnique fédérale de Lausanne, Lausanne, Switzerland
- Istituto Superiore di Sanità, Rome, Italy
- * E-mail:
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191
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Atomic force microscopy in microbiology: new structural and functional insights into the microbial cell surface. mBio 2014; 5:e01363-14. [PMID: 25053785 PMCID: PMC4120197 DOI: 10.1128/mbio.01363-14] [Citation(s) in RCA: 114] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Microbial cells sense and respond to their environment using their surface constituents. Therefore, understanding the assembly and biophysical properties of cell surface molecules is an important research topic. With its ability to observe living microbial cells at nanometer resolution and to manipulate single-cell surface molecules, atomic force microscopy (AFM) has emerged as a powerful tool in microbiology. Here, we survey major breakthroughs made in cell surface microbiology using AFM techniques, emphasizing the most recent structural and functional insights.
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192
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Maloney N, Lukacs G, Jensen J, Hegner M. Nanomechanical sensors for single microbial cell growth monitoring. NANOSCALE 2014; 6:8242-8249. [PMID: 24931547 DOI: 10.1039/c4nr01610f] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
A nanomechanical technique for rapid real time detection and monitoring of microorganism growth will significantly reduce costs and diagnosis times in industrial and clinical settings. Owing to their label free detection mechanism and unprecedented sensitivity to the mass and elastic modulus of biological structures, dynamically operated cantilever arrays provide an opportunity to rapidly detect and track the evolution of microbial growth. Here we report the monitoring of the growth of single Aspergillus niger spores via the multimode response of microcantilevers. The fungal hyphal structure affects the cantilevers' nanomechanical properties as it propagates along the sensor. We demonstrate, for the first time, the mapping of cellular events with great accuracy using a cantilever frequency response. Imaging of growth conditions on the cantilever, which is performed in parallel, allows for verification of these results. Theoretical comparison and finite element modelling confirm experimental findings and allow for determination of the hyphal elastic modulus.
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Affiliation(s)
- Niall Maloney
- Centre for Research on Adaptive Nanostructures and Nanodevices (CRANN), School of Physics, Trinity College Dublin, Dublin 2, Ireland.
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193
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Yang F, Zuo X, Li Z, Deng W, Shi J, Zhang G, Huang Q, Song S, Fan C. A bubble-mediated intelligent microscale electrochemical device for single-step quantitative bioassays. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2014; 26:4671-6. [PMID: 24729272 DOI: 10.1002/adma.201400451] [Citation(s) in RCA: 66] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2014] [Revised: 03/09/2014] [Indexed: 05/14/2023]
Abstract
An intelligent microscale electrochemical device (iMED) for one-step, quantitative and multiplexed electrochemical detection of biomarkers for infectious diseases and tumors is developed. A "plug-in-cartridge" technology is introduced and adapted for use in screen-printed electrodes (SPEs) in electrochemical devices. Using this iMED, biomarkers for two types of tumors and one infectious disease are detected at sub-ng/mL levels in less than 30 min.
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Affiliation(s)
- Fan Yang
- Division of Physical, Biology & Bioimaging Center, Shanghai Synchrotron Radiation Facility, CAS Key Laboratory of Microscale Physics and Technology, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai, China; School of Laboratory Medicine, Hubei University of Chinese Medicine, 1 Huangjia Lake West Road, Wuhan, China
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194
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Syal K, Wang W, Shan X, Wang S, Chen HY, Tao N. Plasmonic imaging of protein interactions with single bacterial cells. Biosens Bioelectron 2014; 63:131-137. [PMID: 25064821 DOI: 10.1016/j.bios.2014.06.069] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2014] [Revised: 06/25/2014] [Accepted: 06/26/2014] [Indexed: 11/30/2022]
Abstract
Quantifying the interactions of bacteria with external ligands is fundamental to the understanding of pathogenesis, antibiotic resistance, immune evasion, and mechanism of antimicrobial action. Due to inherent cell-to-cell heterogeneity in a microbial population, each bacterium interacts differently with its environment. This large variability is washed out in bulk assays, and there is a need of techniques that can quantify interactions of bacteria with ligands at the single bacterium level. In this work, we present a label-free and real-time plasmonic imaging technique to measure the binding kinetics of ligand interactions with single bacteria, and perform statistical analysis of the heterogeneity. Using the technique, we have studied interactions of antibodies with single Escherichia coli O157:H7 cells and demonstrated a capability of determining the binding kinetic constants of single live bacteria with ligands, and quantify heterogeneity in a microbial population.
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Affiliation(s)
- Karan Syal
- Center for Biosensors and Bioelectronics, Biodesign Institute, Arizona State University, Tempe, AZ 85287, USA
| | - Wei Wang
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210093, China
| | - Xiaonan Shan
- Center for Biosensors and Bioelectronics, Biodesign Institute, Arizona State University, Tempe, AZ 85287, USA; School of Electrical, Computer and Energy Engineering, Arizona State University, Tempe, AZ 85287, USA
| | - Shaopeng Wang
- Center for Biosensors and Bioelectronics, Biodesign Institute, Arizona State University, Tempe, AZ 85287, USA; State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210093, China
| | - Hong-Yuan Chen
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210093, China.
| | - Nongjian Tao
- Center for Biosensors and Bioelectronics, Biodesign Institute, Arizona State University, Tempe, AZ 85287, USA; State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210093, China; School of Electrical, Computer and Energy Engineering, Arizona State University, Tempe, AZ 85287, USA.
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195
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Ahmed A, Rushworth JV, Hirst NA, Millner PA. Biosensors for whole-cell bacterial detection. Clin Microbiol Rev 2014; 27:631-46. [PMID: 24982325 PMCID: PMC4135896 DOI: 10.1128/cmr.00120-13] [Citation(s) in RCA: 339] [Impact Index Per Article: 33.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022] Open
Abstract
Bacterial pathogens are important targets for detection and identification in medicine, food safety, public health, and security. Bacterial infection is a common cause of morbidity and mortality worldwide. In spite of the availability of antibiotics, these infections are often misdiagnosed or there is an unacceptable delay in diagnosis. Current methods of bacterial detection rely upon laboratory-based techniques such as cell culture, microscopic analysis, and biochemical assays. These procedures are time-consuming and costly and require specialist equipment and trained users. Portable stand-alone biosensors can facilitate rapid detection and diagnosis at the point of care. Biosensors will be particularly useful where a clear diagnosis informs treatment, in critical illness (e.g., meningitis) or to prevent further disease spread (e.g., in case of food-borne pathogens or sexually transmitted diseases). Detection of bacteria is also becoming increasingly important in antibioterrorism measures (e.g., anthrax detection). In this review, we discuss recent progress in the use of biosensors for the detection of whole bacterial cells for sensitive and earlier identification of bacteria without the need for sample processing. There is a particular focus on electrochemical biosensors, especially impedance-based systems, as these present key advantages in terms of ease of miniaturization, lack of reagents, sensitivity, and low cost.
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Affiliation(s)
- Asif Ahmed
- School of Biomedical Sciences, Faculty of Biological Sciences, University of Leeds, Leeds, United Kingdom
| | - Jo V Rushworth
- School of Biomedical Sciences, Faculty of Biological Sciences, University of Leeds, Leeds, United Kingdom
| | - Natalie A Hirst
- School of Biomedical Sciences, Faculty of Biological Sciences, University of Leeds, Leeds, United Kingdom
| | - Paul A Millner
- School of Biomedical Sciences, Faculty of Biological Sciences, University of Leeds, Leeds, United Kingdom
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196
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Aghayee S, Benadiba C, Notz J, Kasas S, Dietler G, Longo G. Combination of fluorescence microscopy and nanomotion detection to characterize bacteria. J Mol Recognit 2014; 26:590-5. [PMID: 24089366 DOI: 10.1002/jmr.2306] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2013] [Revised: 07/23/2013] [Accepted: 07/29/2013] [Indexed: 11/11/2022]
Abstract
Antibiotic-resistant pathogens are a major health concern in everyday clinical practice. Because their detection by conventional microbial techniques requires minimally 24 h, some of us have recently introduced a nanomechanical sensor, which can reveal motion at the nanoscale. By monitoring the fluctuations of the sensor, this technique can evidence the presence of bacteria and their susceptibility to antibiotics in less than 1 h. Their amplitude correlates to the metabolism of the bacteria and is a powerful tool to characterize these microorganisms at low densities. This technique is new and calls for an effort to optimize its protocol and determine its limits. Indeed, many questions remain unanswered, such as the detection limits or the correlation between the bacterial distribution on the sensor and the detection's output. In this work, we couple fluorescence microscopy to the nanomotion investigation to determine the optimal experimental protocols and to highlight the effect of the different bacterial distributions on the sensor.
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Affiliation(s)
- S Aghayee
- Laboratoire de Physique de la Matière Vivante, Ecole Polytechnique Fédérale de Lausanne (EPFL), CH-1015, Lausanne, Switzerland
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197
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Guillaume-Gentil O, Potthoff E, Ossola D, Franz CM, Zambelli T, Vorholt JA. Force-controlled manipulation of single cells: from AFM to FluidFM. Trends Biotechnol 2014; 32:381-8. [PMID: 24856959 DOI: 10.1016/j.tibtech.2014.04.008] [Citation(s) in RCA: 120] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2013] [Revised: 04/16/2014] [Accepted: 04/21/2014] [Indexed: 01/25/2023]
Abstract
The ability to perturb individual cells and to obtain information at the single-cell level is of central importance for addressing numerous biological questions. Atomic force microscopy (AFM) offers great potential for this prospering field. Traditionally used as an imaging tool, more recent developments have extended the variety of cell-manipulation protocols. Fluidic force microscopy (FluidFM) combines AFM with microfluidics via microchanneled cantilevers with nano-sized apertures. The crucial element of the technology is the connection of the hollow cantilevers to a pressure controller, allowing their operation in liquid as force-controlled nanopipettes under optical control. Proof-of-concept studies demonstrated a broad spectrum of single-cell applications including isolation, deposition, adhesion and injection in a range of biological systems.
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Affiliation(s)
| | - Eva Potthoff
- Institute of Microbiology, ETH Zurich, Vladimir-Prelog-Weg 4, 8093 Zurich, Switzerland
| | - Dario Ossola
- Laboratory of Biosensors and Bioelectronics, Institute for Biomedical Engineering, ETH Zurich, Gloriastrasse 35, 8092 Zurich, Switzerland
| | - Clemens M Franz
- DFG-Center for Functional Nanostructures, Karlsruhe Institute for Technology, Wolfgang-Gaede-Strasse 1a, 76131 Karlsruhe, Germany
| | - Tomaso Zambelli
- Laboratory of Biosensors and Bioelectronics, Institute for Biomedical Engineering, ETH Zurich, Gloriastrasse 35, 8092 Zurich, Switzerland.
| | - Julia A Vorholt
- Institute of Microbiology, ETH Zurich, Vladimir-Prelog-Weg 4, 8093 Zurich, Switzerland.
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198
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Huber F, Lang HP, Gerber C. Nanomechanical sensors: Measuring a response in blood. NATURE NANOTECHNOLOGY 2014; 9:165-167. [PMID: 24584273 DOI: 10.1038/nnano.2014.42] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Affiliation(s)
- F Huber
- Swiss Nano Institute, University of Basel, Klingelbergstrasse 82, 4056 Basel, Switzerland
| | - H P Lang
- Swiss Nano Institute, University of Basel, Klingelbergstrasse 82, 4056 Basel, Switzerland
| | - Ch Gerber
- Swiss Nano Institute, University of Basel, Klingelbergstrasse 82, 4056 Basel, Switzerland
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199
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Longo G, Kasas S. Effects of antibacterial agents and drugs monitored by atomic force microscopy. WILEY INTERDISCIPLINARY REVIEWS-NANOMEDICINE AND NANOBIOTECHNOLOGY 2014; 6:230-44. [PMID: 24616433 DOI: 10.1002/wnan.1258] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/21/2013] [Revised: 01/06/2014] [Accepted: 01/13/2014] [Indexed: 11/07/2022]
Abstract
Originally invented for topographic imaging, atomic force microscopy (AFM) has evolved into a multifunctional biological toolkit, enabling to measure structural and functional details of cells and molecules. Its versatility and the large scope of information it can yield make it an invaluable tool in any biologically oriented laboratory, where researchers need to perform characterizations of living samples as well as single molecules in quasi-physiological conditions and with nanoscale resolution. In the last 20 years, AFM has revolutionized the characterization of microbial cells by allowing a better understanding of their cell wall and of the mechanism of action of drugs and by becoming itself a powerful diagnostic tool to study bacteria. Indeed, AFM is much more than a high-resolution microscopy technique. It can reconstruct force maps that can be used to explore the nanomechanical properties of microorganisms and probe at the same time the morphological and mechanical modifications induced by external stimuli. Furthermore it can be used to map chemical species or specific receptors with nanometric resolution directly on the membranes of living organisms. In summary, AFM offers new capabilities and a more in-depth insight in the structure and mechanics of biological specimens with an unrivaled spatial and force resolution. Its application to the study of bacteria is extremely significant since it has already delivered important information on the metabolism of these small microorganisms and, through new and exciting technical developments, will shed more light on the real-time interaction of antimicrobial agents and bacteria.
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Affiliation(s)
- Giovanni Longo
- Ecole Polytechnique Fédérale de Lausanne, LPMV, Lausanne, Switzerland; Istituto Superiore di Sanità, Rome, Italy
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200
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Maloney N, Lukacs G, Ball SL, Hegner M. Device for filamentous fungi growth monitoring using the multimodal frequency response of cantilevers. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2014; 85:015003. [PMID: 24517802 DOI: 10.1063/1.4854655] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Filamentous fungi cause opportunistic infections in hospital patients. A fast assay to detect viable spores is of great interest. We present a device that is capable of monitoring fungi growth in real time via the dynamic operation of cantilevers in an array. The ability to detect minute frequency shifts for higher order flexural resonance modes is demonstrated using hydrogel functionalised cantilevers. The use of higher order resonance modes sees the sensor dependent mass responsivity enhanced by a factor of 13 in comparison to measurements utilizing the fundamental resonance mode only. As a proof of principle measurement, Aspergillus niger growth is monitored using the first two flexural resonance modes. The detection of single spore growth within 10 h is reported for the first time. The ability to detect and monitor the growth of single spores, within a small time frame, is advantageous in both clinical and industrial settings.
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Affiliation(s)
- N Maloney
- Centre for Research on Adaptive Nanostructures and Nanodevices (CRANN), Trinity College Dublin, Dublin 2, Ireland
| | - G Lukacs
- Centre for Research on Adaptive Nanostructures and Nanodevices (CRANN), Trinity College Dublin, Dublin 2, Ireland
| | - S L Ball
- Centre for Research on Adaptive Nanostructures and Nanodevices (CRANN), Trinity College Dublin, Dublin 2, Ireland
| | - M Hegner
- Centre for Research on Adaptive Nanostructures and Nanodevices (CRANN), Trinity College Dublin, Dublin 2, Ireland
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