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1
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Xie F, Jiang H, Jia X, Zhang J, Zhu Z, Du J, Tang Y. Bridgehead Alkene-Enabled Strain-Driven Bioorthogonal Reaction. Org Lett 2022; 24:5304-5308. [PMID: 35849354 DOI: 10.1021/acs.orglett.2c01895] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
Herein, we report a novel bioorthogonal reaction that hinges on a bridgehead alkene (BHA)-enabled inverse-electron-demand Diels-Alder (IEDDA) cycloaddition. Readily accessible from natural product β-caryophyllene, the strained BHA displays high reactivity toward the IEDDA reaction while maintaining excellent biocompatibility. The developed IEDDA reaction has been applied to in vitro protein labeling and pretargeted live cell imaging.
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Affiliation(s)
- Fayang Xie
- School of Pharmaceutical Sciences, MOE Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology, Tsinghua University, Beijing 100084, China
| | - Haolin Jiang
- School of Pharmaceutical Sciences, MOE Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology, Tsinghua University, Beijing 100084, China.,Academy for Advanced Interdisciplinary Studies, Peking University, Beijing 100871, China
| | - Xiangqian Jia
- School of Pharmaceutical Sciences, MOE Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology, Tsinghua University, Beijing 100084, China
| | - Jingyang Zhang
- School of Pharmaceutical Sciences, MOE Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology, Tsinghua University, Beijing 100084, China
| | - Zhu Zhu
- School of Pharmaceutical Sciences, MOE Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology, Tsinghua University, Beijing 100084, China
| | - Juanjuan Du
- School of Pharmaceutical Sciences, MOE Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology, Tsinghua University, Beijing 100084, China
| | - Yefeng Tang
- School of Pharmaceutical Sciences, MOE Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology, Tsinghua University, Beijing 100084, China
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2
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Elyashberg M, Novitskiy IM, Bates RW, Kutateladze AG, Williams CM. Reassignment of Improbable Natural Products Identified through Chemical Principle Screening. European J Org Chem 2022. [DOI: 10.1002/ejoc.202200572] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Mikhail Elyashberg
- Advanced Chemistry Development Inc. (ACD/Labs) Toronto ON, M5C 1B5 Canada
| | - Ivan M. Novitskiy
- Department of Chemistry and Biochemistry University of Denver Denver CO 80208 United States
| | - Roderick W. Bates
- Division of Chemistry and Biological Chemistry School of Physical and Mathematical Sciences Nanyang Technological University 21 Nanyang Link Singapore 637371
| | - Andrei G. Kutateladze
- Department of Chemistry and Biochemistry University of Denver Denver CO 80208 United States
| | - Craig M. Williams
- School of Chemistry and Molecular Biosciences University of Queensland Brisbane 4072 Queensland Australia
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3
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Cowled MS, Lacey E, Karuso P, Piggott AM. Rechoreographing Enterocin’s Ballet of Isomers: Structure Revision of Enterocins C, D, and F. Org Lett 2020; 22:9688-9692. [DOI: 10.1021/acs.orglett.0c03745] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Michael S. Cowled
- Department of Molecular Sciences, Macquarie University, Sydney, NSW 2109, Australia
| | - Ernest Lacey
- Department of Molecular Sciences, Macquarie University, Sydney, NSW 2109, Australia
- Microbial Screening Technologies, Smithfield, NSW 2164, Australia
| | - Peter Karuso
- Department of Molecular Sciences, Macquarie University, Sydney, NSW 2109, Australia
| | - Andrew M. Piggott
- Department of Molecular Sciences, Macquarie University, Sydney, NSW 2109, Australia
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4
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Maslovskaya LA, Savchenko AI, Krenske EH, Chow S, Holt T, Gordon VA, Reddell PW, Pierce CJ, Parsons PG, Boyle GM, Kutateladze AG, Williams CM. EBC-232 and 323: A Structural Conundrum Necessitating Unification of Five In Silico Prediction and Elucidation Methods. Chemistry 2020; 26:11862-11867. [PMID: 32864777 DOI: 10.1002/chem.202001884] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2020] [Revised: 06/08/2020] [Indexed: 12/12/2022]
Abstract
Structurally unique halimanes EBC-232 and EBC-323, isolated from the Australian rainforest plant Croton insularis, proved considerably difficult to elucidate. The two diastereomers, which consist an unusual oxo-6,7-spiro ring system fused to a dihydrofuran, were solved by unification and consultation of five in silico NMR elucidation and prediction methods [i.e., ACDLabs, olefin strain energy (OSE), DP4, DU8+ and TD DFT CD]. Structure elucidation challenges of this nature are prime test case examples for empowering future AI learning in structure elucidation.
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Affiliation(s)
- Lidia A Maslovskaya
- School of Chemistry and Molecular Biosciences, University of Queensland, Brisbane, 4072, Australia.,QIMR Berghofer Medical Research Institute, PO Royal Brisbane Hospital, Brisbane, 4029, Australia
| | - Andrei I Savchenko
- School of Chemistry and Molecular Biosciences, University of Queensland, Brisbane, 4072, Australia
| | - Elizabeth H Krenske
- School of Chemistry and Molecular Biosciences, University of Queensland, Brisbane, 4072, Australia
| | - Sharon Chow
- School of Chemistry and Molecular Biosciences, University of Queensland, Brisbane, 4072, Australia
| | - Tina Holt
- Department of Chemistry and Biochemistry, University of Denver, Denver, CO, 80208, USA
| | - Victoria A Gordon
- EcoBiotics Limited, PO Box 1, Yungaburra, 4884, Queensland, Australia
| | - Paul W Reddell
- EcoBiotics Limited, PO Box 1, Yungaburra, 4884, Queensland, Australia
| | - Carly J Pierce
- QIMR Berghofer Medical Research Institute, PO Royal Brisbane Hospital, Brisbane, 4029, Australia
| | - Peter G Parsons
- QIMR Berghofer Medical Research Institute, PO Royal Brisbane Hospital, Brisbane, 4029, Australia
| | - Glen M Boyle
- QIMR Berghofer Medical Research Institute, PO Royal Brisbane Hospital, Brisbane, 4029, Australia
| | - Andrei G Kutateladze
- Department of Chemistry and Biochemistry, University of Denver, Denver, CO, 80208, USA
| | - Craig M Williams
- School of Chemistry and Molecular Biosciences, University of Queensland, Brisbane, 4072, Australia
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5
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Kutateladze AG, Krenske EH, Williams CM. Reassignments and Corroborations of Oxo‐Bridged Natural Products Directed by OSE and DU8+ NMR Computation. Angew Chem Int Ed Engl 2019; 58:7107-7112. [DOI: 10.1002/anie.201902777] [Citation(s) in RCA: 35] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2019] [Indexed: 11/09/2022]
Affiliation(s)
| | - Elizabeth H. Krenske
- School of Chemistry and Molecular BiosciencesUniversity of Queensland Brisbane 4072 Queensland Australia
| | - Craig M. Williams
- School of Chemistry and Molecular BiosciencesUniversity of Queensland Brisbane 4072 Queensland Australia
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6
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Kutateladze AG, Krenske EH, Williams CM. Reassignments and Corroborations of Oxo‐Bridged Natural Products Directed by OSE and DU8+ NMR Computation. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201902777] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
| | - Elizabeth H. Krenske
- School of Chemistry and Molecular BiosciencesUniversity of Queensland Brisbane 4072 Queensland Australia
| | - Craig M. Williams
- School of Chemistry and Molecular BiosciencesUniversity of Queensland Brisbane 4072 Queensland Australia
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7
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Larrosa M, Zonker B, Volkmann J, Wech F, Logemann C, Hausmann H, Hrdina R. Directed C−H Bond Oxidation of Bridged Cycloalkanes Catalyzed by Palladium(II) Acetate. Chemistry 2018; 24:6269-6276. [DOI: 10.1002/chem.201800550] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2018] [Revised: 02/26/2018] [Indexed: 01/03/2023]
Affiliation(s)
- Marta Larrosa
- Institute of Organic Chemistry; Justus-Liebig University; Heinrich-Buff-Ring 17 35392 Giessen Germany
| | - Benjamin Zonker
- Institute of Organic Chemistry; Justus-Liebig University; Heinrich-Buff-Ring 17 35392 Giessen Germany
| | - Jannis Volkmann
- Institute of Organic Chemistry; Justus-Liebig University; Heinrich-Buff-Ring 17 35392 Giessen Germany
| | - Felix Wech
- Institute of Organic Chemistry; Justus-Liebig University; Heinrich-Buff-Ring 17 35392 Giessen Germany
| | - Christian Logemann
- Institute of Inorganic and Analytical Chemistry; Justus-Liebig University; Heinrich-Buff-Ring 17 35392 Giessen Germany
| | - Heike Hausmann
- Institute of Organic Chemistry; Justus-Liebig University; Heinrich-Buff-Ring 17 35392 Giessen Germany
| | - Radim Hrdina
- Institute of Organic Chemistry; Justus-Liebig University; Heinrich-Buff-Ring 17 35392 Giessen Germany
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8
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Lin M, Cai PJ, Zeng Z, Lin N, Shen Y, Tang B, Li F, Chen C, Yu ZX, Zhang Y. Conformational Bias by a Removable Silyl Group: Construction of Bicyclo[n
.3.1]alkenes by Ring Closing Metathesis. Chemistry 2017; 24:2334-2338. [DOI: 10.1002/chem.201705275] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2017] [Indexed: 12/14/2022]
Affiliation(s)
- Minggui Lin
- Department of Chemistry and Key Laboratory for Chemical Biology of, Fujian Province; iChEM; College of Chemistry and Chemical Engineering; Xiamen University; Xiamen Fujian 361005 China
| | - Pei-Jun Cai
- College of Chemistry; Peking University; Beijing 100871 China
| | - Zhixiong Zeng
- Department of Chemistry and Key Laboratory for Chemical Biology of, Fujian Province; iChEM; College of Chemistry and Chemical Engineering; Xiamen University; Xiamen Fujian 361005 China
| | - Na Lin
- Department of Chemistry and Key Laboratory for Chemical Biology of, Fujian Province; iChEM; College of Chemistry and Chemical Engineering; Xiamen University; Xiamen Fujian 361005 China
| | - Yang Shen
- Department of Chemistry and Key Laboratory for Chemical Biology of, Fujian Province; iChEM; College of Chemistry and Chemical Engineering; Xiamen University; Xiamen Fujian 361005 China
| | - Bin Tang
- Department of Chemistry and Key Laboratory for Chemical Biology of, Fujian Province; iChEM; College of Chemistry and Chemical Engineering; Xiamen University; Xiamen Fujian 361005 China
| | - Fan Li
- Department of Chemistry and Key Laboratory for Chemical Biology of, Fujian Province; iChEM; College of Chemistry and Chemical Engineering; Xiamen University; Xiamen Fujian 361005 China
| | - Chen Chen
- Department of Chemistry and Key Laboratory for Chemical Biology of, Fujian Province; iChEM; College of Chemistry and Chemical Engineering; Xiamen University; Xiamen Fujian 361005 China
| | - Zhi-Xiang Yu
- College of Chemistry; Peking University; Beijing 100871 China
| | - Yandong Zhang
- Department of Chemistry and Key Laboratory for Chemical Biology of, Fujian Province; iChEM; College of Chemistry and Chemical Engineering; Xiamen University; Xiamen Fujian 361005 China
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9
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Tang Y, Xue Y, Du G, Wang J, Liu J, Sun B, Li XN, Yao G, Luo Z, Zhang Y. Structural Revisions of a Class of Natural Products: Scaffolds of Aglycon Analogues of Fusicoccins and Cotylenins Isolated from Fungi. Angew Chem Int Ed Engl 2016; 55:4069-73. [PMID: 26916098 DOI: 10.1002/anie.201600313] [Citation(s) in RCA: 48] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2016] [Revised: 01/22/2016] [Indexed: 12/14/2022]
Affiliation(s)
- Ying Tang
- Tongji Hospital, Tongji Medical College; Huazhong University of Science and Technology; Wuhan China
| | - Yongbo Xue
- Hubei Key Laboratory of Natural Medicinal Chemistry and Resource Evaluation; School of Pharmacy, Tongji Medical College; Huazhong University of Science and Technology; Wuhan 430030 China
| | - Guang Du
- Tongji Hospital, Tongji Medical College; Huazhong University of Science and Technology; Wuhan China
| | - Jianping Wang
- Hubei Key Laboratory of Natural Medicinal Chemistry and Resource Evaluation; School of Pharmacy, Tongji Medical College; Huazhong University of Science and Technology; Wuhan 430030 China
| | - Junjun Liu
- Hubei Key Laboratory of Natural Medicinal Chemistry and Resource Evaluation; School of Pharmacy, Tongji Medical College; Huazhong University of Science and Technology; Wuhan 430030 China
| | - Bin Sun
- Hubei Key Laboratory of Natural Medicinal Chemistry and Resource Evaluation; School of Pharmacy, Tongji Medical College; Huazhong University of Science and Technology; Wuhan 430030 China
| | - Xiao-Nian Li
- State Key Laboratory of Phytochemistry and Plant Resources in West China; Chinese Academy of Sciences; Kunming China
| | - Guangmin Yao
- Hubei Key Laboratory of Natural Medicinal Chemistry and Resource Evaluation; School of Pharmacy, Tongji Medical College; Huazhong University of Science and Technology; Wuhan 430030 China
| | - Zengwei Luo
- Hubei Key Laboratory of Natural Medicinal Chemistry and Resource Evaluation; School of Pharmacy, Tongji Medical College; Huazhong University of Science and Technology; Wuhan 430030 China
| | - Yonghui Zhang
- Hubei Key Laboratory of Natural Medicinal Chemistry and Resource Evaluation; School of Pharmacy, Tongji Medical College; Huazhong University of Science and Technology; Wuhan 430030 China
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10
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Tang Y, Xue Y, Du G, Wang J, Liu J, Sun B, Li XN, Yao G, Luo Z, Zhang Y. Structural Revisions of a Class of Natural Products: Scaffolds of Aglycon Analogues of Fusicoccins and Cotylenins Isolated from Fungi. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201600313] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Ying Tang
- Tongji Hospital, Tongji Medical College; Huazhong University of Science and Technology; Wuhan China
| | - Yongbo Xue
- Hubei Key Laboratory of Natural Medicinal Chemistry and Resource Evaluation; School of Pharmacy, Tongji Medical College; Huazhong University of Science and Technology; Wuhan 430030 China
| | - Guang Du
- Tongji Hospital, Tongji Medical College; Huazhong University of Science and Technology; Wuhan China
| | - Jianping Wang
- Hubei Key Laboratory of Natural Medicinal Chemistry and Resource Evaluation; School of Pharmacy, Tongji Medical College; Huazhong University of Science and Technology; Wuhan 430030 China
| | - Junjun Liu
- Hubei Key Laboratory of Natural Medicinal Chemistry and Resource Evaluation; School of Pharmacy, Tongji Medical College; Huazhong University of Science and Technology; Wuhan 430030 China
| | - Bin Sun
- Hubei Key Laboratory of Natural Medicinal Chemistry and Resource Evaluation; School of Pharmacy, Tongji Medical College; Huazhong University of Science and Technology; Wuhan 430030 China
| | - Xiao-Nian Li
- State Key Laboratory of Phytochemistry and Plant Resources in West China; Chinese Academy of Sciences; Kunming China
| | - Guangmin Yao
- Hubei Key Laboratory of Natural Medicinal Chemistry and Resource Evaluation; School of Pharmacy, Tongji Medical College; Huazhong University of Science and Technology; Wuhan 430030 China
| | - Zengwei Luo
- Hubei Key Laboratory of Natural Medicinal Chemistry and Resource Evaluation; School of Pharmacy, Tongji Medical College; Huazhong University of Science and Technology; Wuhan 430030 China
| | - Yonghui Zhang
- Hubei Key Laboratory of Natural Medicinal Chemistry and Resource Evaluation; School of Pharmacy, Tongji Medical College; Huazhong University of Science and Technology; Wuhan 430030 China
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11
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Finn PB, Derstine BP, Sieburth SM. Carbocyclic Amino Ketones by Bredt's Rule‐Arrested Kulinkovich–de Meijere Reaction. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201509983] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Paul B. Finn
- Department of Chemistry Temple University 1901 N. 13th St. Philadelphia PA 19122 USA
| | - Brenden P. Derstine
- Department of Chemistry Temple University 1901 N. 13th St. Philadelphia PA 19122 USA
| | - Scott McN. Sieburth
- Department of Chemistry Temple University 1901 N. 13th St. Philadelphia PA 19122 USA
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12
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Finn PB, Derstine BP, Sieburth SM. Carbocyclic Amino Ketones by Bredt's Rule-Arrested Kulinkovich-de Meijere Reaction. Angew Chem Int Ed Engl 2016; 55:2536-9. [PMID: 26840216 DOI: 10.1002/anie.201509983] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2015] [Indexed: 11/09/2022]
Abstract
The Ti(II) -mediated formation of cyclopropylamines from alkenes and amides, the Kulinkovich-de Meijere reaction, involves two carbon-carbon bond-forming steps. Strategic use of a tricyclic intermediate can arrest the process if the second step requires formation of a bridgehead double bond. Use of this Bredt's rule constraint results in the production of carbocyclic amino ketones, key alkaloid building blocks.
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Affiliation(s)
- Paul B Finn
- Department of Chemistry, Temple University, 1901 N. 13th St., Philadelphia, PA, 19122, USA
| | - Brenden P Derstine
- Department of Chemistry, Temple University, 1901 N. 13th St., Philadelphia, PA, 19122, USA
| | - Scott McN Sieburth
- Department of Chemistry, Temple University, 1901 N. 13th St., Philadelphia, PA, 19122, USA.
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