1
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Wang Z, Lu J, Hao A, Xing P. Odd-Even Law Mediated Supramolecular Chirality of Luminescent Dipeptides for Chiroptical Energy Transfer. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2024:e2405698. [PMID: 39263767 DOI: 10.1002/smll.202405698] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2024] [Revised: 08/27/2024] [Indexed: 09/13/2024]
Abstract
Inherent luminescent short peptides essentially provide opportunities to rationally manipulate supramolecular chirality and chiral luminescence. Herein, a facile protocol to construct a series of naphthalimide-appended dipeptides is reported that show ultrasound wave-activated supramolecular chirality regulated by odd-even law. Naphthalimide luminophores are conjugated to the dipeptide skeleton with variable alkyl spacers. The presence of tyrosine interferes the kinetic aggregation into achiral nanoparticles without chirality transfer to supramolecular scale. However, ultrasound treatment initiates the nanoparticle-to-helix transition accompanied with the appeared chiral optics, including Cotton effect and circularly polarized luminescence (CPL). The supramolecular chiral parameters, including handedness of helices and chiroptical behaviors, follow the odd-even law of alkyl spacers in dipeptides bearing non-substituted naphthalimides. The amine-substitution boosted the quantum yields of dipeptide whereas no odd-even effect. The two types of dipeptides constituted ideal energy transfer pairs that enable the efficient energy transfer as well as the transportation of odd-even law to dipeptides containing substituted naphthalimides. This work sheds light on the construction of luminescent dipeptides with applications in precise control over chirality transportation and chiral luminescence.
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Affiliation(s)
- Zhuoer Wang
- Key Laboratory of Colloid and Interface Chemistry of Ministry of Education, School of Chemistry and Chemical Engineering, Shandong University, Jinan, 250100, P. R. China
| | - Jiahui Lu
- Key Laboratory of Colloid and Interface Chemistry of Ministry of Education, School of Chemistry and Chemical Engineering, Shandong University, Jinan, 250100, P. R. China
| | - Aiyou Hao
- Key Laboratory of Colloid and Interface Chemistry of Ministry of Education, School of Chemistry and Chemical Engineering, Shandong University, Jinan, 250100, P. R. China
| | - Pengyao Xing
- Key Laboratory of Colloid and Interface Chemistry of Ministry of Education, School of Chemistry and Chemical Engineering, Shandong University, Jinan, 250100, P. R. China
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2
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Xue M, Zhang L, Wang X, Dong Q, Zhu Z, Wang X, Gu Q, Kang F, Li XX, Zhang Q. A Metal-Free Helical Covalent Inorganic Polymer: Preparation, Crystal Structure and Optical Properties. Angew Chem Int Ed Engl 2024; 63:e202315338. [PMID: 38126955 DOI: 10.1002/anie.202315338] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2023] [Revised: 12/12/2023] [Accepted: 12/21/2023] [Indexed: 12/23/2023]
Abstract
Helical morphologies are widely observed in nature, however, it is very challenging to prepare artificial helical polymers. Especially, precisely understanding the structure information of artificial metal-free helical covalent inorganic polymers via single-crystal X-ray diffraction (SCXRD) analysis is rarely explored. Here, we successfully prepare a novel metal-free helical covalent inorganic polymer ({[Te(C6 H5 )2 ] [PO3 (OH)]}n , named CityU-10) by introducing angular anions (HOPO3 2- ) into traditional tellurium-oxygen chains. The dynamic reversibility of the reaction is realized through the introduction of organic tellurium precursor and the slow hydrolysis of polyphosphoric acid. High-quality and large-size single crystals of CityU-10 have been successfully characterized via SCXRD, where the same-handed helical inorganic polymer chains form a pseudo-two-dimensional layer via multiple hydrogen-bonding interactions. The left-handed layers and right-handed layers alternatively stack together through weak hydrogen bonds to form a three-dimensional supramolecular structure. The single crystals of CityU-10 are found to display promising optical properties with a large birefringence. Our results would offer new guidelines for designing and preparing new crystalline covalent polymers through tellurium-based chemistry.
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Affiliation(s)
- Miaomiao Xue
- Department of Materials Science and Engineering, City University of Hong Kong, Tat Chee Avenue, Kowloon Tong, Hong Kong SAR, P. R. China
| | - Lei Zhang
- Department of Materials Science and Engineering, City University of Hong Kong, Tat Chee Avenue, Kowloon Tong, Hong Kong SAR, P. R. China
| | - Xiang Wang
- Department of Materials Science and Engineering, City University of Hong Kong, Tat Chee Avenue, Kowloon Tong, Hong Kong SAR, P. R. China
| | - Qiang Dong
- Department of Materials Science and Engineering, City University of Hong Kong, Tat Chee Avenue, Kowloon Tong, Hong Kong SAR, P. R. China
| | - Zengkui Zhu
- Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, Fuzhou, Fujian, 350002, China
| | - Xin Wang
- Department of Materials Science and Engineering, City University of Hong Kong, Tat Chee Avenue, Kowloon Tong, Hong Kong SAR, P. R. China
| | - Qianfeng Gu
- Department of Materials Science and Engineering, City University of Hong Kong, Tat Chee Avenue, Kowloon Tong, Hong Kong SAR, P. R. China
| | - Fangyuan Kang
- Department of Materials Science and Engineering, City University of Hong Kong, Tat Chee Avenue, Kowloon Tong, Hong Kong SAR, P. R. China
| | - Xin-Xiong Li
- Fujian Provincial Key Laboratory of Advanced Inorganic Oxygenated-Materials, College of Chemistry, Fuzhou University, Fuzhou, Fujian, 350108, China
| | - Qichun Zhang
- Department of Materials Science and Engineering, City University of Hong Kong, Tat Chee Avenue, Kowloon Tong, Hong Kong SAR, P. R. China
- Department of Chemistry & Center of Super-Diamond and Advanced Films (COSDAF), City University of Hong Kong, Tat Chee Avenue, Kowloon Tong, Hong Kong SAR, P. R. China
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3
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Rohmer M, Ebbinghaus SG, Busse K, Radicke J, Kressler J, Binder WH. A Living Topochemical Ring-Opening Polymerization of Achiral Amino Acid N-Carboxy-Anhydrides in Single Crystals. Chemistry 2023; 29:e202302585. [PMID: 37698241 DOI: 10.1002/chem.202302585] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2023] [Revised: 09/11/2023] [Accepted: 09/12/2023] [Indexed: 09/13/2023]
Abstract
A living topochemical ring-opening polymerization (ROP) of achiral amino-acid N-carboxyanhydrides (NCAs) is reported. Single crystals of the NCAs of α-aminoisobutyric acid (Aib) and 1-aminocyclohexanecarboxylic acid (ACHC) were grown, allowing a ring-opening polymerization macroscopically induced by amines. The single crystals could be polymerized at temperatures from 25-50 °C after physically contacting the amine-based initiator with the crystals. Topochemical polymerization of the crystals was proven by MALDI-ToF MS and XRD, generating polymers with chain lengths of up to 40 units and a complete affixation of the initiating amine at the polymer's head. Due to the proper alignment of the reacting groups in the crystal, longer polymer chains with improved purities can be reached, as chain-transfer is reduced as compared to solution polymerization. Simple purification of the polymers can be achieved by separation of the unreacted NCA via dispersion in acetonitrile. Overall, this method enables the preparation of polymers with higher chain length and purities at mild conditions, finally demonstrating a crystal-based ring opening polymerization.
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Affiliation(s)
- Matthias Rohmer
- Macromolecular Chemistry, Institute of Chemistry, Martin-Luther University Halle-Wittenberg, Von-Danckelmann-Platz 4, 06120, Halle, Germany
| | - Stefan G Ebbinghaus
- Inorganic Chemistry, Institute of Chemistry, Martin-Luther University Halle-Wittenberg, Kurt-Mothes-Straße 2, 06120, Halle, Germany
| | - Karsten Busse
- Physical Chemistry of Polymers, Institute of Chemistry, Martin-Luther University Halle-Wittenberg, Von-Danckelmann-Platz 4, 06120, Halle (Saale), Germany
| | - Julian Radicke
- Physical Chemistry of Polymers, Institute of Chemistry, Martin-Luther University Halle-Wittenberg, Von-Danckelmann-Platz 4, 06120, Halle (Saale), Germany
| | - Jörg Kressler
- Physical Chemistry of Polymers, Institute of Chemistry, Martin-Luther University Halle-Wittenberg, Von-Danckelmann-Platz 4, 06120, Halle (Saale), Germany
| | - Wolfgang H Binder
- Macromolecular Chemistry, Institute of Chemistry, Martin-Luther University Halle-Wittenberg, Von-Danckelmann-Platz 4, 06120, Halle, Germany
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4
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Rai R, Khazeber R, Sureshan KM. Single-Crystal-to-Single-Crystal Topochemical Synthesis of a Collagen-inspired Covalent Helical Polymer. Angew Chem Int Ed Engl 2023; 62:e202315742. [PMID: 37861464 DOI: 10.1002/anie.202315742] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2023] [Revised: 10/20/2023] [Accepted: 10/20/2023] [Indexed: 10/21/2023]
Abstract
There is much demand for crystalline covalent helical polymers. Inspired by the helical structure of collagen, we synthesized a covalent helical polymer wherein the repeating dipeptide Gly-Pro units are connected by triazole linkages. We synthesized an azide and alkyne-modified dipeptide monomer made up of the repeating amino acid sequence of collagen. In its crystals, the monomer molecules aligned in head-to-tail fashion with proximally placed azide and alkyne forming supramolecular helices. At 60 °C, the monomer underwent single-crystal-to-single-crystal (SCSC) topochemical azide-alkyne cycloaddition polymerization, yielding a covalent helical polymer as confirmed by single-crystal X-ray diffraction (SCXRD) analysis. Compared to the monomer crystals, the polymer single-crystals were very strong and showed three-fold increase in Young's modulus, which is higher than collagen, many synthetic polymers and other materials. The crystals of this covalent helical polymer could bear loads as high as 1.5 million times of their own weight without deformation. These crystals could also withstand high compression force and did not disintegrate even at an applied force of 98 kN. Such light-weight strong materials are in demand for various technological applications.
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Affiliation(s)
- Rishika Rai
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram Thiruvananthapuram, Kerala, 695551, India
| | - Ravichandran Khazeber
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram Thiruvananthapuram, Kerala, 695551, India
| | - Kana M Sureshan
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram Thiruvananthapuram, Kerala, 695551, India
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5
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Wang M, Jin Y, Zhang W, Zhao Y. Single-crystal polymers (SCPs): from 1D to 3D architectures. Chem Soc Rev 2023; 52:8165-8193. [PMID: 37929665 DOI: 10.1039/d3cs00553d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2023]
Abstract
Single-crystal polymers (SCPs) with unambiguous chemical structures at atomic-level resolutions have attracted great attention. Obtaining precise structural information of these materials is critical as it enables a deeper understanding of the potential driving forces for specific packing and long-range order, secondary interactions, and kinetic and thermodynamic factors. Such information can ultimately lead to success in controlling the synthesis or engineering of their crystal structures for targeted applications, which could have far-reaching impact. Successful synthesis of SCPs with atomic level control of the structures, especially for those with 2D and 3D architectures, is rare. In this review, we summarize the recent progress in the synthesis of SCPs, including 1D, 2D, and 3D architectures. Solution synthesis, topochemical synthesis, and extreme condition synthesis are summarized and compared. Around 70 examples of SCPs with unambiguous structure information are presented, and their synthesis methods and structural analysis are discussed. This review offers critical insights into the structure-property relationships, providing guidance for the future rational design and bottom-up synthesis of a variety of highly ordered polymers with unprecedented functions and properties.
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Affiliation(s)
- Mingsen Wang
- College of Polymer Science and Engineering, Qingdao University of Science and Technology, Qingdao 266000, China.
| | - Yinghua Jin
- Department of Chemistry, University of Colorado Boulder, Boulder, Colorado 80309, USA.
| | - Wei Zhang
- Department of Chemistry, University of Colorado Boulder, Boulder, Colorado 80309, USA.
| | - Yingjie Zhao
- College of Polymer Science and Engineering, Qingdao University of Science and Technology, Qingdao 266000, China.
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6
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Raju C, Mridula K, Srinivasan N, Kunnikuruvan S, Sureshan KM. Topochemical Syntheses of Polyarylopeptides Involving Large Molecular Motions: Frustrated Monomer Packing Leads to the Formation of Polymer Blends. Angew Chem Int Ed Engl 2023; 62:e202306504. [PMID: 37486334 DOI: 10.1002/anie.202306504] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2023] [Revised: 07/24/2023] [Accepted: 07/24/2023] [Indexed: 07/25/2023]
Abstract
We report the topochemical syntheses of three polyarylopeptides, wherein triazolylphenyl group is integrated into the backbone of peptide chains. We synthesized three different monomers having azide and arylacetylene as end-groups from glycine, L-alanine and L-valine. We crystallized these monomers and the crystal structures of two of them were determined by single-crystal X-ray diffractometry. Due to the steric constraints, both of these monomers crystallized with two molecules, viz. conformers A and B, in the asymmetric unit. Consistently, in both cases, the A-conformers are antiparallelly π-stacked and B-conformers are parallelly slip-stacked, exploiting weak interactions. Though the arrangements of molecules in the pristine crystals were unsuitable for topochemical reaction, upon heating, they undergo large motion inside the crystal lattice to reach a transient reactive orientation and thereby the self-sorted conformer stacks react to give a blend of triazole-linked polyarylopeptides having two different linkages. Due to the large molecular motion inside crystals, the product phase loses its crystallinity.
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Affiliation(s)
- Cijil Raju
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram Thiruvananthapuram, Kerala, 695551, India
| | - Kozhukunnon Mridula
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram Thiruvananthapuram, Kerala, 695551, India
| | - Nikitha Srinivasan
- Department of Chemistry, Indian Institute of Technology Madras, Chennai, 600036, India
| | - Sooraj Kunnikuruvan
- Department of Chemistry, Indian Institute of Technology Madras, Chennai, 600036, India
- Centre for Atomistic Modelling and Materials Design and Centre for Molecular Materials and Functions, Indian Institute of Technology Madras, Chennai, 600036, India
| | - Kana M Sureshan
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram Thiruvananthapuram, Kerala, 695551, India
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7
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Rayan B, Barnea E, Khokhlov A, Upcher A, Landau M. Differential fibril morphologies and thermostability determine functional roles of Staphylococcus aureus PSMα1 and PSMα3. Front Mol Biosci 2023; 10:1184785. [PMID: 37469708 PMCID: PMC10353841 DOI: 10.3389/fmolb.2023.1184785] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2023] [Accepted: 06/21/2023] [Indexed: 07/21/2023] Open
Abstract
Phenol-soluble modulins (PSMs) are virulent peptides secreted by staphylococci that undergo self-assembly into amyloid fibrils. This study focuses on Staphylococcus aureus PSMα1 and PSMα3, which share homologous sequences but exhibit distinct amyloid fibril structures. Upon subjecting PSMα1 to an 80°C heat shock, it fibrillates into cross-β structures, resulting in the loss of cytotoxic activity. Conversely, PSMα3 cross-α fibrils undergo reversible disaggregation upon heat shock, leading to the recovery of cytotoxicity. The differential thermostability probably arises from the presence of hydrogen bonds along the β-strands within the β-sheets of the cross-β fibrils. We propose that the breakdown of PSMα3 fibrils into soluble species, potentially co-aggregating with membrane lipids, is crucial for its toxic process and enables the reversible modulation of its biological activity under stress conditions. In contrast, the formation of robust and irreversible cross-β fibrils by PSMα1 corresponds to its role in biofilm stability. These findings emphasize how the unique fibril morphologies and thermostability of PSMα1 and PSMα3 shape their functional roles in various environments of S. aureus.
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Affiliation(s)
- Bader Rayan
- Department of Biology, Technion-Israel Institute of Technology, Haifa, Israel
| | - Eilon Barnea
- Department of Biology, Technion-Israel Institute of Technology, Haifa, Israel
| | - Alexander Khokhlov
- Department of Biology, Technion-Israel Institute of Technology, Haifa, Israel
| | - Alexander Upcher
- Ilse Katz Institute for Nanoscale Science and Technology, Ben Gurion University of the Negev, Beer-Sheva, Israel
| | - Meytal Landau
- Department of Biology, Technion-Israel Institute of Technology, Haifa, Israel
- Centre for Structural Systems Biology (CSSB), Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany
- The Center for Experimental Medicine, Universitätsklinikum Hamburg-Eppendorf (UKE), Hamburg, Germany
- European Molecular Biology Laboratory (EMBL), Hamburg, Germany
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8
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Athiyarath V, Mathew LA, Zhao Y, Khazeber R, Ramamurty U, Sureshan KM. Rational design and topochemical synthesis of polymorphs of a polymer. Chem Sci 2023; 14:5132-5140. [PMID: 37206383 PMCID: PMC10189859 DOI: 10.1039/d3sc00053b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2023] [Accepted: 04/13/2023] [Indexed: 05/21/2023] Open
Abstract
Packing a polymer in different ways can give polymorphs of the polymer having different properties. β-Turn forming peptides such as 2-aminoisobutyric acid (Aib)-rich peptides adopt several conformations by varying the dihedral angles. Aiming at this, a β-turn-forming peptide monomer would give different polymorphs and these polymorphs upon topochemical polymerization would yield polymorphs of the polymer, we designed an Aib-rich monomer N3-(Aib)3-NHCH2-C[triple bond, length as m-dash]CH. This monomer crystallizes as two polymorphs and one hydrate. In all forms, the peptide adopts β-turn conformations and arranges in a head-to-tail manner with their azide and alkyne units proximally placed in a ready-to-react alignment. On heating, both the polymorphs undergo topochemical azide-alkyne cycloaddition polymerization. Polymorph I polymerized in a single-crystal-to-single-crystal (SCSC) fashion and the single-crystal X-ray diffraction analysis of the polymer revealed its screw-sense reversing helical structure. Polymorph II maintains its crystallinity during polymerization but gradually becomes amorphous upon storage. The hydrate III undergoes a dehydrative transition to polymorph II. Nanoindentation studies revealed that different polymorphs of the monomer and the corresponding polymers exhibited different mechanical properties, in accordance with their crystal packing. This work demonstrates the promising future of the marriage of polymorphism and topochemistry for obtaining polymorphs of polymers.
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Affiliation(s)
- Vignesh Athiyarath
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram Kerala 695551 India
| | - Liby Ann Mathew
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram Kerala 695551 India
| | - Yakai Zhao
- School of Mechanical and Aerospace Engineering, Nanyang Technological University 639798 Singapore
| | - Ravichandran Khazeber
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram Kerala 695551 India
| | - Upadrasta Ramamurty
- School of Mechanical and Aerospace Engineering, Nanyang Technological University 639798 Singapore
| | - Kana M Sureshan
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram Kerala 695551 India
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9
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Raju C, Kunnikuruvan S, Sureshan KM. Topochemical Cycloaddition Reaction between an Azide and an Internal Alkyne. Angew Chem Int Ed Engl 2022; 61:e202210453. [DOI: 10.1002/anie.202210453] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2022] [Indexed: 11/08/2022]
Affiliation(s)
- Cijil Raju
- School of Chemistry Indian Institute of Science Education and Research Thiruvananthapuram Thiruvananthapuram Kerala-695551 India
| | - Sooraj Kunnikuruvan
- Department of Chemistry Indian Institute of Technology Madras Chennai 600036 India
| | - Kana M. Sureshan
- School of Chemistry Indian Institute of Science Education and Research Thiruvananthapuram Thiruvananthapuram Kerala-695551 India
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10
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Topochemical Cycloaddition Reaction between an Azide and an Internal Alkyne. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202210453] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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11
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Khazeber R, Sureshan KM. Single-crystal-to-single-crystal translation of a helical supramolecular polymer to a helical covalent polymer. Proc Natl Acad Sci U S A 2022; 119:e2205320119. [PMID: 35858342 PMCID: PMC9303982 DOI: 10.1073/pnas.2205320119] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2022] [Accepted: 05/30/2022] [Indexed: 01/16/2023] Open
Abstract
Polymers possessing helical conformation in the solid state are in high demand. We report a helical peptide-polymer via the topochemical ene-azide cycloaddition (TEAC) polymerization. The molecules of the designed Gly-Phe-based dipeptide, decorated with ene and azide, assemble in its crystals as β-sheets and as supramolecular helices in two mutually perpendicular directions. While the NH…O H-bonding facilitates β-sheet-like stacking along one direction, weak CH…N H-bonding between the azide-nitrogen and vinylic-hydrogen of molecules belonging to the adjacent stacks arranges them in a head-to-tail manner as supramolecular helices. In the crystal lattice, the azide and alkene of adjacent molecules in the supramolecular helix are suitably preorganized for their TEAC reaction. The dipeptide underwent regio- and stereospecific polymerization upon mild heating in a single-crystal-to-single-crystal fashion, yielding a triazoline-linked helical covalent polymer that could be characterized by single-crystal X-ray diffraction studies. Upon heating, the triazoline-linked polymer undergoes denitrogenation to aziridine-linked polymer, as evidenced by differential scanning calorimetry, thermogravimetric analysis, and solid-state NMR analyses.
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Affiliation(s)
- Ravichandran Khazeber
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram, Kerala-695551, India
| | - Kana M. Sureshan
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram, Kerala-695551, India
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12
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Majumder L, Sepay N, Banerji B. ß-Sheet Induced Helical Self-Assembly Structure Formation by Dityrosine Dipeptide: Crystallographic Evidence and Other Biophysical Studies. J Phys Chem B 2022; 126:5207-5218. [PMID: 35819930 DOI: 10.1021/acs.jpcb.2c02681] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Self-assembled structures derived from short peptides are a versatile class of organic building blocks which have shown great potential in a wide range of domains. In the current study, side-chain protected dityrosine based short peptide (TP) was synthesized, and its conformation accompanied by a self-assembly pattern was investigated through several spectroscopic studies and single crystal X-ray analysis. The single crystal X-ray analysis of TP confirmed that it exhibited a ß-sheet pattern which further self-assembled to form ß-sheet-promoted helical architectures by various noncovalent interactions. To the best of our knowledge, this is the first crystallographic report of a side-chain protected dityrosine based short peptide adopting ß-sheet-promoted helical structures. Morphological analysis of TP also revealed ß-sheet as well as helical conformations. NMR study suggested that both amide hydrogens of TP are involved in intermolecular hydrogen bonding. Moreover, CD spectroscopy established the self-assembly phenomenon of TP in the solution state by showing both corresponding ß-sheet and α-helix bands. Hirshfeld surface analysis and DFT study also concluded similar results. These kinds of small peptide units mimicking important protein secondary structures like helical assembly would be of pivotal significance as they may act as small peptidomimetics, mimicking the protein "Hotspot" area.
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Affiliation(s)
- Leena Majumder
- Organic and Medicinal Chemistry Division, Indian Institute of Chemical Biology, Council of Scientific and Industrial Research, 4, Raja S, C, Mullick Road, Kolkata, West Bengal 700032, India
| | - Nayim Sepay
- Department of Chemistry, Lady Brabourne College, P-1/2, Suhrawardy Avenue, Beniapukur, Kolkata, West Bengal 700017, India
| | - Biswadip Banerji
- Organic and Medicinal Chemistry Division, Indian Institute of Chemical Biology, Council of Scientific and Industrial Research, 4, Raja S, C, Mullick Road, Kolkata, West Bengal 700032, India
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13
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Ravi A, Hassan SZ, Bhandary S, Sureshan KM. Topochemical Postulates: Are They Relevant for Topochemical Reactions Occurring at Elevated Temperatures? Angew Chem Int Ed Engl 2022; 61:e202200954. [PMID: 35258143 DOI: 10.1002/anie.202200954] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2022] [Indexed: 12/26/2022]
Abstract
A rigid inositol-derived monomer functionalized with azide and alkyne as the complementary reactive groups (CRGs) crystallized as three distinct polymorphs I-III. Despite the unsuitable orientation of CRGs in the crystals for complete polymerization, all the three polymorphs underwent regiospecific and quantitative topochemical azide-alkyne cycloaddition (TAAC) polymerization upon heating to yield three different polymorphs of 1,2,3-triazol-1,4-diyl-linked-poly-neo-inositol. The molecules in these polymorphs exploit the weak intermolecular interactions, free space in the crystal lattice, and heat energy for their large and cooperative molecular motion to attain a transient reactive orientation, ultimately leading to the regiospecific TAAC reaction yielding distinct crystalline polymers. This study cautions that the overreliance on topochemical postulates for the prediction of topochemical reactivity at high temperatures could be misleading.
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Affiliation(s)
- Arthi Ravi
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram, 695551, Vithura, India
| | - Syed Zahid Hassan
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram, 695551, Vithura, India.,Present Address: Department of Chemical Engineering, Pohang University of Science & Technology (POSTECH), Pohang, 37673, Republic of Korea
| | - Subhrajyoti Bhandary
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram, 695551, Vithura, India.,Present Address: Department of Chemistry, Ghent University, Krijgslaan 281-S3, 9000, Ghent, Belgium
| | - Kana M Sureshan
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram, 695551, Vithura, India
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14
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Misra R, Vijayakanth T, Shimon LJW, Adler-Abramovich L. Atomic insight into short helical peptide comprised of consecutive multiple aromatic residues. Chem Commun (Camb) 2022; 58:6445-6448. [PMID: 35548938 DOI: 10.1039/d2cc01038k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The occurrence of sequential multiple aromatic residues in a helical sequence is rare compared to the β-sheet rich structure. Here, using helix promoting α-aminoisobutyric acid (Aib) residues, we unravel atomistic details of the helical secondary structure formation and the super helical assembly of two heptapeptides composed of sequential five and six phenylalanine (Phe) residues.
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Affiliation(s)
- Rajkumar Misra
- Department of Oral Biology, The Goldschleger School of Dental Medicine, Sackler Faculty of Medicine, The Center for Physics & Chemistry of Living Systems, and the Center for Nanoscience and Nanotechnology, Tel-Aviv University, 69978, Israel. .,Dept. of Med. Chem, NIPER Mohali, S.A.S. Nagar, Mohali, 160062, India
| | - Thangavel Vijayakanth
- The Shmunis School of Biomedicine and Cancer Research George S. Wise, Faculty of Life Sciences, Tel Aviv University, Tel Aviv, 6997801, Israel
| | - Linda J W Shimon
- Department of Chemical Research Support, The Weizmann Institute of Science, 761000, Rehovot, Israel
| | - Lihi Adler-Abramovich
- Department of Oral Biology, The Goldschleger School of Dental Medicine, Sackler Faculty of Medicine, The Center for Physics & Chemistry of Living Systems, and the Center for Nanoscience and Nanotechnology, Tel-Aviv University, 69978, Israel.
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15
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Bhandary S, Pathigoolla A, Madhusudhanan MC, Sureshan KM. Azide–Alkyne Interactions: A Crucial Attractive Force for Their Preorganization for Topochemical Cycloaddition Reaction. Chemistry 2022; 28:e202200820. [DOI: 10.1002/chem.202200820] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2022] [Indexed: 12/17/2022]
Affiliation(s)
- Subhrajyoti Bhandary
- School of Chemistry Indian Institute of Science Education and Research Thiruvananthapuram Kerala 695551 India
| | - Atchutarao Pathigoolla
- School of Chemistry Indian Institute of Science Education and Research Thiruvananthapuram Kerala 695551 India
| | - Mithun C. Madhusudhanan
- School of Chemistry Indian Institute of Science Education and Research Thiruvananthapuram Kerala 695551 India
| | - Kana M. Sureshan
- School of Chemistry Indian Institute of Science Education and Research Thiruvananthapuram Kerala 695551 India
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16
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Ravi A, Hassan SZ, Bhandary S, Sureshan KM. Topochemical Postulates: Are They Relevant for Topochemical Reactions Occurring at Elevated Temperatures? Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202200954] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Arthi Ravi
- School of Chemistry Indian Institute of Science Education and Research Thiruvananthapuram 695551 Vithura India
| | - Syed Zahid Hassan
- School of Chemistry Indian Institute of Science Education and Research Thiruvananthapuram 695551 Vithura India
- Present Address: Department of Chemical Engineering Pohang University of Science & Technology (POSTECH) Pohang 37673 Republic of Korea
| | - Subhrajyoti Bhandary
- School of Chemistry Indian Institute of Science Education and Research Thiruvananthapuram 695551 Vithura India
- Present Address: Department of Chemistry Ghent University Krijgslaan 281-S3 9000 Ghent Belgium
| | - Kana M. Sureshan
- School of Chemistry Indian Institute of Science Education and Research Thiruvananthapuram 695551 Vithura India
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17
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Abstract
In this highlight, we describe the construction of supramolecular single/double/triple-helical assemblies from small di/tri/tetrapeptides and their applications.
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Affiliation(s)
- Rajat Subhra Giri
- Department of Chemistry, Laboratory of Peptide and Amyloid Research, Indian Institute of Technology Guwahati, Assam-781039, India
| | - Bhubaneswar Mandal
- Department of Chemistry, Laboratory of Peptide and Amyloid Research, Indian Institute of Technology Guwahati, Assam-781039, India
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18
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Anderson CL, Li H, Jones CG, Teat SJ, Settineri NS, Dailing EA, Liang J, Mao H, Yang C, Klivansky LM, Li X, Reimer JA, Nelson HM, Liu Y. Solution-processable and functionalizable ultra-high molecular weight polymers via topochemical synthesis. Nat Commun 2021; 12:6818. [PMID: 34819494 PMCID: PMC8613210 DOI: 10.1038/s41467-021-27090-1] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2021] [Accepted: 11/01/2021] [Indexed: 01/25/2023] Open
Abstract
Topochemical polymerization reactions hold the promise of producing ultra-high molecular weight crystalline polymers. However, the totality of topochemical polymerization reactions has failed to produce ultra-high molecular weight polymers that are both soluble and display variable functionality, which are restrained by the crystal-packing and reactivity requirements on their respective monomers in the solid state. Herein, we demonstrate the topochemical polymerization reaction of a family of para-azaquinodimethane compounds that undergo facile visible light and thermally initiated polymerization in the solid state, allowing for the first determination of a topochemical polymer crystal structure resolved via the cryoelectron microscopy technique of microcrystal electron diffraction. The topochemical polymerization reaction also displays excellent functional group tolerance, accommodating both solubilizing side chains and reactive groups that allow for post-polymerization functionalization. The thus-produced soluble ultra-high molecular weight polymers display superior capacitive energy storage properties. This study overcomes several synthetic and characterization challenges amongst topochemical polymerization reactions, representing a critical step toward their broader application.
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Affiliation(s)
- Christopher L Anderson
- The Molecular Foundry, Lawrence Berkeley National Laboratory, One Cyclotron Road, Berkeley, CA, 94720, USA
- Department of Chemistry, University of California, Berkeley, Berkeley, CA, 94720, USA
| | - He Li
- The Molecular Foundry, Lawrence Berkeley National Laboratory, One Cyclotron Road, Berkeley, CA, 94720, USA
- Materials Sciences Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, Berkeley, CA, 94720, USA
| | - Christopher G Jones
- Department of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, CA, 90095, USA
| | - Simon J Teat
- Advanced Light Source, Lawrence Berkeley National Laboratory, One Cyclotron Road, Berkeley, CA, 94720, USA
| | - Nicholas S Settineri
- Department of Chemistry, University of California, Berkeley, Berkeley, CA, 94720, USA
- Advanced Light Source, Lawrence Berkeley National Laboratory, One Cyclotron Road, Berkeley, CA, 94720, USA
| | - Eric A Dailing
- The Molecular Foundry, Lawrence Berkeley National Laboratory, One Cyclotron Road, Berkeley, CA, 94720, USA
| | - Jiatao Liang
- The Molecular Foundry, Lawrence Berkeley National Laboratory, One Cyclotron Road, Berkeley, CA, 94720, USA
- Department of Chemistry, University of California, Berkeley, Berkeley, CA, 94720, USA
| | - Haiyan Mao
- Department of Chemical and Biomolecular Engineering, University of California, Berkeley, Berkeley, CA, 94720, USA
| | - Chongqing Yang
- The Molecular Foundry, Lawrence Berkeley National Laboratory, One Cyclotron Road, Berkeley, CA, 94720, USA
| | - Liana M Klivansky
- The Molecular Foundry, Lawrence Berkeley National Laboratory, One Cyclotron Road, Berkeley, CA, 94720, USA
| | - Xinle Li
- The Molecular Foundry, Lawrence Berkeley National Laboratory, One Cyclotron Road, Berkeley, CA, 94720, USA
| | - Jeffrey A Reimer
- Department of Chemical and Biomolecular Engineering, University of California, Berkeley, Berkeley, CA, 94720, USA
| | - Hosea M Nelson
- Department of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, CA, 90095, USA.
| | - Yi Liu
- The Molecular Foundry, Lawrence Berkeley National Laboratory, One Cyclotron Road, Berkeley, CA, 94720, USA.
- Materials Sciences Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, Berkeley, CA, 94720, USA.
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19
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Azide⋅⋅⋅Oxygen Interaction: A Crystal Engineering Tool for Conformational Locking. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202106614] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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20
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Affiliation(s)
- Ravichandran Khazeber
- School of Chemistry Indian Institute of Science Education and Research Thiruvananthapuram Thiruvananthapuram Kerala 695551 India
| | - Kana M. Sureshan
- School of Chemistry Indian Institute of Science Education and Research Thiruvananthapuram Thiruvananthapuram Kerala 695551 India
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21
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Sureshan KM, Madhusudhanan MC, Balan H, Werz DB. Azide···Oxygen Interaction: A Crystal Engineering Tool for Conformational Locking. Angew Chem Int Ed Engl 2021; 60:22797-22803. [PMID: 34399025 DOI: 10.1002/anie.202106614] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2021] [Revised: 08/15/2021] [Indexed: 11/09/2022]
Abstract
We have designed, synthesized and crystallized 36 compounds, each containing an azide group and an oxygen atom separated by three bonds. Crystal structure analysis revealed that each of these molecules adopts a conformation in which the azide and oxygen groups orient syn to each other with a short O ··· N b contact. Geometry-optimized structures [using M06-2X/6-311G(d,p) level of theory ] also showed the syn conformation in all 36 of these cases, suggesting that this not merely a crystal packing effect. Quantum topological analysis using Bader's Atoms in Molecules (AIM) theory revealed bond paths and bond critical points (BCP) in these structures suggesting its nature and energetics to be similar to weak hydrogen bonding. The NCI-RDG plot clearly revealed the attractive interaction consisting of electrostatic or dispersive components in all the 36 systems. NBO analysis suggested a weak orbital-relaxation (charge-transfer) contribution of energy for a few (sp2) O-donor systems. Natural population analysis (NPA) and molecular electrostatic potential mapping (MESP) of these crystal structures further revealed the existence of favorable azide-oxygen interaction. A CSD search indicated the frequent and consistent occurrence of this interaction and its role dictating the syn conformation of azide and oxygen in molecules where these groups are separated by 2-4 bonds.
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Affiliation(s)
- Kana M Sureshan
- Indian Institute of Science Education and Research, School of Chemistry, Thiruvananthapuram, Maruthamala, 695551, Thiruvananthapuram, INDIA
| | - Mithun C Madhusudhanan
- IISER-TVM: Indian Institute of Science Education Research Thiruvananthapuram, School of Chemistry, Maruthamala, Vithura, 795551, Thiruvananthapuram, INDIA
| | - Haripriya Balan
- IISER-TVM: Indian Institute of Science Education Research Thiruvananthapuram, School of Chemistry, Maruthamala, Vithura, 695551, Thiruvananthapuram, INDIA
| | - Daniel B Werz
- TU Braunschweig: Technische Universitat Braunschweig, Institute fur Organic Chemie, Hagenring 30, Braunschweig, 38106, Braunschweig, GERMANY
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22
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Sureshan KM, Khazeber R. Topochemical Ene-Azide Cycloaddition Reaction. Angew Chem Int Ed Engl 2021; 60:24875-24881. [PMID: 34379367 DOI: 10.1002/anie.202109344] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2021] [Indexed: 11/10/2022]
Abstract
Topochemical reactions, high-yielding solid-state reactions arising from the proximal alignment of reacting partners in the crystal lattice, do not require solvents, catalysts, and additives are of high demand in the context of green processes and environmental safety. However, the bottleneck is the limited number of reactions that can be done in the crystal medium. We present the topochemical ene-azide cycloaddition (TEAC) reaction, wherein alkene and azide groups undergo lattice-controlled cycloaddition reaction giving triazoline in crystals. A designed monomer that arranges in a head-to-tail manner in its crystals pre-organizing the reacting groups of adjacent molecules in proximity undergoes spontaneous cycloaddition reaction in a single-crystal-to-single-crystal fashion, yielding the triazoline-linked polymer. A unique advantage of this reaction is that the triazoline can be converted to aziridine by simple heating, which we exploited for the otherwise challenging post-synthetic backbone modification of the polymer. This reaction may revolutionize the field of polymer science.
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Affiliation(s)
- Kana M Sureshan
- Indian Institute of Science Education and Research, School of Chemistry, Thiruvananthapuram, Maruthamala, 695551, Thiruvananthapuram, INDIA
| | - Ravichandran Khazeber
- Indian Institute of Science Education and Research Thiruvananthapuram, School of Chemistry, Maruthamala, Vithura, 695551, Thiruvananthapuram, INDIA
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23
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Agouram N, El Hadrami EM, Bentama A. 1,2,3-Triazoles as Biomimetics in Peptide Science. Molecules 2021; 26:2937. [PMID: 34069302 PMCID: PMC8156386 DOI: 10.3390/molecules26102937] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2021] [Revised: 05/05/2021] [Accepted: 05/05/2021] [Indexed: 01/10/2023] Open
Abstract
Natural peptides are an important class of chemical mediators, essential for most vital processes. What limits the potential of the use of peptides as drugs is their low bioavailability and enzymatic degradation in vivo. To overcome this limitation, the development of new molecules mimicking peptides is of great importance for the development of new biologically active molecules. Therefore, replacing the amide bond in a peptide with a heterocyclic bioisostere, such as the 1,2,3-triazole ring, can be considered an effective solution for the synthesis of biologically relevant peptidomimetics. These 1,2,3-triazoles may have an interesting biological activity, because they behave as rigid link units, which can mimic the electronic properties of amide bonds and show bioisosteric effects. Additionally, triazole can be used as a linker moiety to link peptides to other functional groups.
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Affiliation(s)
- Naima Agouram
- Laboratory of Applied Organic Chemistry, Faculty of Science and Technology, Sidi Mohammed Ben Abdellah University, Immouzer Road, Fez 30050, Morocco; (E.M.E.H.); (A.B.)
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24
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The amphibian antimicrobial peptide uperin 3.5 is a cross-α/cross-β chameleon functional amyloid. Proc Natl Acad Sci U S A 2021; 118:2014442118. [PMID: 33431675 DOI: 10.1073/pnas.2014442118] [Citation(s) in RCA: 31] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022] Open
Abstract
Antimicrobial activity is being increasingly linked to amyloid fibril formation, suggesting physiological roles for some human amyloids, which have historically been viewed as strictly pathological agents. This work reports on formation of functional cross-α amyloid fibrils of the amphibian antimicrobial peptide uperin 3.5 at atomic resolution, an architecture initially discovered in the bacterial PSMα3 cytotoxin. The fibrils of uperin 3.5 and PSMα3 comprised antiparallel and parallel helical sheets, respectively, recapitulating properties of β-sheets. Uperin 3.5 demonstrated chameleon properties of a secondary structure switch, forming mostly cross-β fibrils in the absence of lipids. Uperin 3.5 helical fibril formation was largely induced by, and formed on, bacterial cells or membrane mimetics, and led to membrane damage and cell death. These findings suggest a regulation mechanism, which includes storage of inactive peptides as well as environmentally induced activation of uperin 3.5, via chameleon cross-α/β amyloid fibrils.
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25
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Misra S, Singh P, Mahata RN, Brandão P, Roy S, Mahapatra AK, Nanda J. Supramolecular Antiparallel β-Sheet Formation by Tetrapeptides Based on Amyloid Sequence. J Phys Chem B 2021; 125:4274-4285. [PMID: 33886330 DOI: 10.1021/acs.jpcb.0c10920] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Self-assembly of short peptides has emerged as an interesting research field for a wide range of applications. Recently, several truncated fragments of long-chain peptides or proteins responsible for different neurodegenerative diseases were studied to understand whether they can mimic the property and function of native peptides or not. It was reported that such a kind of peptide adopts a β-sheet structure in the disease state. It was observed that aromatic amino acid-rich peptide fragments possess a high tendency to adopt a β-sheet conformation. In this article, we are first time reporting the crystal structure of two tetrapeptides: Boc-GAII-OMe (Peptide 1) and Boc-GGVV-OMe (Peptide 2), composed of aliphatic amino acids, and the sequences are similar to the Aβ-peptide fragments Aβ29-32 and Aβ37-40 , respectively. In the solid-state, they are self-assembled in an antiparallel β-sheet fashion. The peptide units are connected by the strong amide hydrogen-bonding (N-H···O) interactions. Apart from that, other noncovalent interactions are also present, which help to stabilize the cross-β-sheet arrangement. Interestingly, in the crystal structure of Peptide 1, noncovalent C···C interaction between the electron-deficient carbonyl carbon, and the electron-rich sp3-carbon atom is observed, which is quite rare in the literature. The calculated torsion angles for these peptides are lying in the β-sheet region of the Ramachandran plot. FT-IR studies also indicate the formation of an antiparallel β-sheet structure in the solid-state. Circular dichroism of the peptides in the aqueous solution also suggests the presence of predominantly β-sheet-like conformation in the aqueous solution. Under cross-polarized light, Congo Red stained both peptides showed green-gold color due to birefringence indicating their amyloidogenic nature. This result indicates that the short peptide composed of aliphatic amino acid is capable of forming a β-sheet structure in the absence of aromatic amino acid and also can mimic the function of the native amyloid peptide.
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Affiliation(s)
- Souvik Misra
- Department of Chemistry, Indian Institute of Engineering Science and Technology, Shibpur, P.O.-Botanic Garden, Howrah-711103, West Bengal, India
| | - Pijush Singh
- Department of Biochemistry and Biophysics. University of Kalyani, Kalyani, Nadia, West Bengal, India
| | - Rabindra Nath Mahata
- Department of Chemistry, Indian Institute of Engineering Science and Technology, Shibpur, P.O.-Botanic Garden, Howrah-711103, West Bengal, India
| | - Paula Brandão
- Departamento de Química/CICECO, Universidade de Aveiro, 3810-193 Aveiro, Portugal
| | - Subhasish Roy
- Department of Chemistry, BITS-Pilani K. K. Birla Goa Campus, 433 Sancoale, Goa 403726, India
| | - Ajit K Mahapatra
- Department of Chemistry, Indian Institute of Engineering Science and Technology, Shibpur, P.O.-Botanic Garden, Howrah-711103, West Bengal, India
| | - Jayanta Nanda
- Department of Chemistry, University of North Bengal, Raja Rammohunpur, P.O.-NBU campus, Darjeeling-734013, West Bengal, India
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26
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Hema K, Ravi A, Raju C, Sureshan KM. Polymers with advanced structural and supramolecular features synthesized through topochemical polymerization. Chem Sci 2021; 12:5361-5380. [PMID: 34168781 PMCID: PMC8179609 DOI: 10.1039/d0sc07066a] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2020] [Accepted: 02/22/2021] [Indexed: 12/29/2022] Open
Abstract
Polymers are an integral part of our daily life. Hence, there are constant efforts towards synthesizing novel polymers with unique properties. As the composition and packing of polymer chains influence polymer's properties, sophisticated control over the molecular and supramolecular structure of the polymer helps tailor its properties as desired. However, such precise control via conventional solution-state synthesis is challenging. Topochemical polymerization (TP), a solvent- and catalyst-free reaction that occurs under the confinement of a crystal lattice, offers profound control over the molecular structure and supramolecular architecture of a polymer and usually results in ordered polymers. In particular, single-crystal-to-single-crystal (SCSC) TP is advantageous as we can correlate the structure and packing of polymer chains with their properties. By designing molecules appended with suitable reactive moieties and utilizing the principles of supramolecular chemistry to align them in a reactive orientation, the synthesis of higher-dimensional polymers and divergent topologies has been achieved via TP. Though there are a few reviews on TP in the literature, an exclusive review showcasing the topochemical synthesis of polymers with advanced structural features is not available. In this perspective, we present selected examples of the topochemical synthesis of organic polymers with sophisticated structures like ladders, tubular polymers, alternating copolymers, polymer blends, and other interesting topologies. We also detail some strategies adopted for obtaining distinct polymers from the same monomer. Finally, we highlight the main challenges and prospects for developing advanced polymers via TP and inspire future directions in this area.
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Affiliation(s)
- Kuntrapakam Hema
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram Maruthamala, Vithura Thiruvananthapuram-695551 India
| | - Arthi Ravi
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram Maruthamala, Vithura Thiruvananthapuram-695551 India
| | - Cijil Raju
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram Maruthamala, Vithura Thiruvananthapuram-695551 India
| | - Kana M Sureshan
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram Maruthamala, Vithura Thiruvananthapuram-695551 India
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27
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Hema K, Ravi A, Raju C, Pathan JR, Rai R, Sureshan KM. Topochemical polymerizations for the solid-state synthesis of organic polymers. Chem Soc Rev 2021; 50:4062-4099. [PMID: 33543741 DOI: 10.1039/d0cs00840k] [Citation(s) in RCA: 57] [Impact Index Per Article: 19.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Topochemical polymerizations are solid-state reactions driven by the alignment of monomers in the crystalline state. The molecular confinement in the monomer crystal lattice offers precise control over the tacticity, packing and crystallinity of the polymer formed in the topochemical reaction. As topochemical reactions occur under solvent- and catalyst-free conditions, giving products in high yield and selectivity/specificity that do not require tedious chromatographic purification, topochemical polymerizations are highly attractive over traditional solution-phase polymer synthesis. By this method, polymers having sophisticated structures and desired topologies can be availed. Often, such ordered packing confers attractive properties to the topochemically-synthesized polymers. Diverse categories of topochemical polymerizations are known, such as polymerizations via [2+2], [4+4], [4+2], and [3+2] cycloadditions, and polymerization of diynes, triynes, dienes, trienes, and quinodimethanes, each of which proceed under suitable stimuli like heat, light or pressure. Each class of these reactions requires a unique packing arrangement of the corresponding monomers for the smooth reaction and produces polymers with distinct properties. This review is penned with the intent of bringing all the types of topochemical polymerizations into a single platform and communicating the versatility of these lattice-controlled polymerizations. We present a brief history of the development of each category and comprehensively review the topochemical synthesis of fully-organic polymers reported in the last twenty years, particularly in crystals. We mainly focus on the various molecular designs and crystal engineering strategies adopted to align monomers in a suitable orientation for polymerization. Finally, we analyze the current challenges and future perspectives in this research field.
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Affiliation(s)
- Kuntrapakam Hema
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram, Kerala 695551, India.
| | - Arthi Ravi
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram, Kerala 695551, India.
| | - Cijil Raju
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram, Kerala 695551, India.
| | - Javed R Pathan
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram, Kerala 695551, India.
| | - Rishika Rai
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram, Kerala 695551, India.
| | - Kana M Sureshan
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram, Kerala 695551, India.
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28
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Nandi SK, Mondal S, Mondal S, Gumtya M, Haldar D. Structure–mechanical property relationship of a pentapeptide crystal. CrystEngComm 2021. [DOI: 10.1039/d1ce00738f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A peptide having miniature (P)310/α-helix conformation, forms intermolecular H-bonded supramolecular helical bundle structure which further self-assembled to interdigited supramolecular sheet-like structure that eventually from the brittle crystal.
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Affiliation(s)
- Sujay Kumar Nandi
- Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur-741246, West Bengal, India
| | - Saikat Mondal
- Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur-741246, West Bengal, India
- Centre for Advanced Functional Materials (CAFM), Indian Institute of Science Education and Research, Kolkata, Mohanpur-741246, West Bengal, India
| | - Sahabaj Mondal
- Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur-741246, West Bengal, India
| | - Milan Gumtya
- Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur-741246, West Bengal, India
| | - Debasish Haldar
- Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur-741246, West Bengal, India
- Centre for Advanced Functional Materials (CAFM), Indian Institute of Science Education and Research, Kolkata, Mohanpur-741246, West Bengal, India
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