Factors affecting microbial sulfate reduction byDesulfovibrio desulfuricansin continuous culture: Limiting nutrients and sulfide concentration

Assessment of rapid initiators and long-lasting nutrients for developing biological permeable reactive barriers to treat mine-contaminated groundwater

The formation of mine-contaminated groundwater as a result of acidic mine drainage from the oxidation of sulfur-containing minerals entering the groundwater. Biological permeable reactive barrier (Bio-PRB) technology is excellent for the remediation of mine-contaminated groundwater. Usually, the organic substrates utilized in Bio-PRB are a combination of rapid initiators, which are readily bioavailable, and long-lasting nutrients, which are more difficult to degrade. Herein, we investigated the effectiveness of three rapid initiators and three long-lasting nutrients to remove sulfate from simulated mine-contaminated groundwater via simulated column experiments. The rapid initiators comprised crude glycerol, sodium acetate, and industrial syrup (IS), and the long-lasting nutrients included biodiesel emulsified oil, soybean oil emulsified oil, and high-carbon alcohol emulsified oil (HO). Microorganisms were stimulated using IS to create a sulfate reduction system owing to its high total organic carbon content (24.30 g L-1), achieving optimal sulfate removal rate (1.69 mmol dm-3 d-1). The fastest (2.93 mmol dm-3 d-1) and highest (88%) sulfate removal rates were achieved using HO, which is probably associated with the ability of HO to provide the most suitable C/N ratio (111.75) and induce the growth of sulfate-reducing bacteria (SRB) for substrate degradation. Conversely, a high concentration of sulfate reduction products inhibited SRB growth in the HO column. The addition of organic materials promoted SRB growth and various organic substrate-degrading bacteria. Furthermore, the competitive growth of methanogens (86.6%) may be responsible for the decrease in the relative abundance of SRB during the later stages of the experiment in the HO column.

A diazotrophy-ammoniotrophy dual growth model for the sulfate reducing bacterium Desulfovibrio vulgaris var. Hildenborough

Sulfate reducing bacteria (SRB) comprise one of the few prokaryotic groups in which biological nitrogen fixation (BNF) is common. Recent studies have highlighted SRB roles in N cycling, particularly in oligotrophic coastal and benthic environments where they could contribute significantly to N input. Most studies of SRB have focused on sulfur cycling and SRB growth models have primarily aimed at understanding the effects of electron sources, with N usually provided as fixed-N (nitrate, ammonium). Mechanistic links between SRB nitrogen-fixing metabolism and growth are not well understood, particularly in environments where fixed-N fluctuates. Here, we investigate diazotrophic growth of the model sulfate reducer Desulfovibrio vulgaris var. Hildenborough under anaerobic heterotrophic conditions and contrasting N availabilities using a simple cellular model with dual ammoniotrophic and diazotrophic modes. The model was calibrated using batch culture experiments with varying initial ammonium concentrations (0-3000 µM) and acetylene reduction assays of BNF activity. The model confirmed the preferential usage of ammonium over BNF for growth and successfully reproduces experimental data, with notably clear bi-phasic growth curves showing an initial ammoniotrophic phase followed by onset of BNF. Our model enables quantification of the energetic cost of each N acquisition strategy and indicates the existence of a BNF-specific limiting phenomenon, not directly linked to micronutrient (Mo, Fe, Ni) concentration, by-products (hydrogen, hydrogen sulfide), or fundamental model metabolic parameters (death rate, electron acceptor stoichiometry). By providing quantitative predictions of environment and metabolism, this study contributes to a better understanding of anaerobic heterotrophic diazotrophs in environments with fluctuating N conditions.

Response to substrate limitation by a marine sulfate-reducing bacterium

Sulfate-reducing microorganisms (SRM) in subsurface sediments live under constant substrate and energy limitation, yet little is known about how they adapt to this mode of life. We combined controlled chemostat cultivation and transcriptomics to examine how the marine sulfate reducer, Desulfobacterium autotrophicum, copes with substrate (sulfate or lactate) limitation. The half-saturation uptake constant (K_m) for lactate was 1.2 µM, which is the first value reported for a marine SRM, while the K_m for sulfate was 3 µM. The measured residual lactate concentration in our experiments matched values observed in situ in marine sediments, supporting a key role of SRM in the control of lactate concentrations. Lactate limitation resulted in complete lactate oxidation via the Wood-Ljungdahl pathway and differential overexpression of genes involved in uptake and metabolism of amino acids as an alternative carbon source. D. autotrophicum switched to incomplete lactate oxidation, rerouting carbon metabolism in response to sulfate limitation. The estimated free energy was significantly lower during sulfate limitation (-28 to -33 kJ mol^-1 sulfate), suggesting that the observed metabolic switch is under thermodynamic control. Furthermore, we detected the upregulation of putative sulfate transporters involved in either high or low affinity uptake in response to low or high sulfate concentration.

Efficiencies of available organic mixtures for the biological treatment of highly acidic-sulphate rich drainage of the San Jose mine, Bolivia

The environmental contamination due to mining activities in the Andean region of Bolivia is a serious concern, as it leads to highly acidic (pH 2.4) acid mine drainage (AMD), severely polluted by sulfate (>12,000 mg L^-1). Passive bioreactors entailing biological sulfate reduction and removal of metals through sulfide precipitation have been recognized as a promising biotechnology. The reactivity of mixtures containing locally available substrates: sheep manure, compost and straw, was assessed through batch experiments conducted with a synthetic solution simulating the composition of AMD from San José mine (Oruro). The removal of sulfate and metals was successful in all reactors, at the end of the experiment (56 days) sulfate concentrations dropped to 1378-2081 mg L^-1, corresponding to a removal efficiency between 84% and 89%, while average removal for Fe, Zn, Pb, and Cd were 99.8%, 98.5%, 94.7%, 98.6%, respectively. The sulfate and metal removal showed three phases. In the first phase, the removal was independent of the organic composition and attributable to pH-controlled mechanisms i.e. adsorption, precipitation of oxy(hydroxides) and co-precipitation. During the second phase, sulfate and metals concentrations remained rather constant; while in the third phase, the removal was affected by the organic matter composition. Sulfate removal rate attained the highest values (227-243 mg L^-1 d^-1) in the third phase, and it was attributable to biological reduction with not sulfate limitation. The depletion of nutrients rather than the sulfate availability may have limited the sulfate removal at the end of the experiment.

Microbial Diversity Dynamics in a Methanogenic-Sulfidogenic UASB Reactor

In this study, the long-term performance and microbial dynamics of an Upflow Anaerobic Sludge Blanket (UASB) reactor targeting sulfate reduction in a SOx emissions treatment system were assessed using crude glycerol as organic carbon source and electron donor under constant S and C loading rates. The reactor was inoculated with granular sludge obtained from a pulp and paper industry and fed at a constant inlet sulfate concentration of 250 mg S-SO₄²⁻L⁻¹ and a constant C/S ratio of 1.5 ± 0.3 g Cg⁻¹ S for over 500 days. Apart from the regular analysis of chemical species, Illumina analyses of the 16S rRNA gene were used to study the dynamics of the bacterial community along with the whole operation. The reactor was sampled along the operation to monitor its diversity and the changes in targeted species to gain insight into the performance of the sulfidogenic UASB. Moreover, studies on the stratification of the sludge bed were performed by sampling at different reactor heights. Shifts in the UASB performance correlated well with the main shifts in microbial communities of interest. A progressive loss of the methanogenic capacity towards a fully sulfidogenic UASB was explained by a progressive wash-out of methanogenic Archaea, which were outcompeted by sulfate-reducing bacteria. Desulfovibrio was found as the main sulfate-reducing genus in the reactor along time. A progressive reduction in the sulfidogenic capacity of the UASB was found in the long run due to the accumulation of a slime-like substance in the UASB.

Advances in heavy metal removal by sulfate-reducing bacteria

Industrial development has led to generation of large volumes of wastewater containing heavy metals, which need to be removed before the wastewater is released into the environment. Chemical and electrochemical methods are traditionally applied to treat this type of wastewater. These conventional methods have several shortcomings, such as secondary pollution and cost. Bioprocesses are gradually gaining popularity because of their high selectivities, low costs, and reduced environmental pollution. Removal of heavy metals by sulfate-reducing bacteria (SRB) is an economical and effective alternative to conventional methods. The limitations of and advances in SRB activity have not been comprehensively reviewed. In this paper, recent advances from laboratory studies in heavy metal removal by SRB were reported. Firstly, the mechanism of heavy metal removal by SRB is introduced. Then, the factors affecting microbial activity and metal removal efficiency are elucidated and discussed in detail. In addition, recent advances in selection of an electron donor, enhancement of SRB activity, and improvement of SRB tolerance to heavy metals are reviewed. Furthermore, key points for future studies of the SRB process are proposed.

Effect of ammonium, electron donor and sulphate transient feeding conditions on sulphidogenesis in sequencing batch bioreactors

This work aimed to study the effect of transient feeding conditions on sulphidogenesis in 8 sequencing batch bioreactors (SBR). SBR L1 and H1, operated under steady-state conditions were used as the control reactors, while four SBR were tested under transient feeding conditions using moderate (L2 and L3, feast and famine: 2.5 and 0 g SO₄^2-·L^-1) and high (H2 and H3, feast and famine: 15 and 0 g SO₄^2-·L^-1) loads. The sulphate removal efficiency (RE) was ≥90% in SBR L2, L3 and H1. The NH₄⁺ famine conditions resulted in a higher sulphate RE (≥40% H3) compared to feast conditions (≤20% H2). Besides, the sulphidogenic first-order kinetic constant was 4% larger and the use of electron donor was 16.6% more efficient under NH₄⁺ famine conditions. Sulphidogenesis is robust to transient feeding conditions, but not when applying high loading rates (SBR H2 and H3).

Formation of Large Native Sulfur Deposits Does Not Require Molecular Oxygen

Large native (i.e., elemental) sulfur deposits can be part of caprock assemblages found on top of or in lateral position to salt diapirs and as stratabound mineralization in gypsum and anhydrite lithologies. Native sulfur is formed when hydrocarbons come in contact with sulfate minerals in presence of liquid water. The prevailing model for native sulfur formation in such settings is that sulfide produced by sulfate-reducing bacteria is oxidized to zero-valent sulfur in presence of molecular oxygen (O2). Although possible, such a scenario is problematic because: (1) exposure to oxygen would drastically decrease growth of microbial sulfate-reducing organisms, thereby slowing down sulfide production; (2) on geologic timescales, excess supply with oxygen would convert sulfide into sulfate rather than native sulfur; and (3) to produce large native sulfur deposits, enormous amounts of oxygenated water would need to be brought in close proximity to environments in which ample hydrocarbon supply sustains sulfate reduction. However, sulfur stable isotope data from native sulfur deposits emplaced at a stage after the formation of the host rocks indicate that the sulfur was formed in a setting with little solute exchange with the ambient environment and little supply of dissolved oxygen. We deduce that there must be a process for the formation of native sulfur in absence of an external oxidant for sulfide. We hypothesize that in systems with little solute exchange, sulfate-reducing organisms, possibly in cooperation with other anaerobic microbial partners, drive the formation of native sulfur deposits. In order to cope with sulfide stress, microbes may shift from harmful sulfide production to non-hazardous native sulfur production. We propose four possible mechanisms as a means to form native sulfur: (1) a modified sulfate reduction process that produces sulfur compounds with an intermediate oxidation state, (2) coupling of sulfide oxidation to methanogenesis that utilizes methylated compounds, acetate or carbon dioxide, (3) ammonium oxidation coupled to sulfate reduction, and (4) sulfur comproportionation of sulfate and sulfide. We show these reactions are thermodynamically favorable and especially useful in environments with multiple stressors, such as salt and dissolved sulfide, and provide evidence that microbial species functioning in such environments produce native sulfur. Integrating these insights, we argue that microbes may form large native sulfur deposits in absence of light and external oxidants such as O2, nitrate, and metal oxides. The existence of such a process would not only explain enigmatic occurrences of native sulfur in the geologic record, but also provide an explanation for cryptic sulfur and carbon cycling beneath the seabed.

Denitrifying sulfur conversion-associated EBPR: The effect of pH on anaerobic metabolism and performance

The performance of the denitrifying sulfur conversion-associated enhanced biological phosphorus removal (DS-EBPR) process tends to be unstable and requires further study and development. This in turn requires extensive study of the anaerobic metabolism in terms of its stoichiometry and kinetics. This study evaluates the corresponding responses of DS-EBPR to pH, as it significantly influences both stoichiometry and biochemical kinetics. The impacts of five representative pH values ranging between 6.5 and 8.5 on the anaerobic metabolism were investigated, followed by identification of the optimal pH for performance optimization. A mature DS-EBPR sludge was used in the study, enriched with approximately 30% sulfate-reducing bacteria (SRB) and 33% sulfide-oxidizing bacteria (SOB). Through a series of batch tests, the optimal pH range was determined as 7.0-7.5. In this pH range, the anaerobic stoichiometry of phosphorus released/volatile fatty acid (VFA) uptake ratio, sulfate reduction, and internal polymer production (including poly-β-hydroxyalkanoates and polysulfide and/or elemental sulfur) all increased along with the anaerobic kinetics of the VFA uptake ratio. Consequently, phosphorus removal was maximized at this pH range (≥95% vs. 84-93% at other pH values), as was sulfur conversion (16 mg S/L vs. 10-13 mg S/L). This pH range therefore favors the activity and synergy of the key functional bacteria (i.e. SRB and SOB). Anaerobic maintenance tests showed these bacteria required 38-61% less energy for maintenance than that reported for GAOs regardless of pH changes, improving their ability to cope with anaerobic starvation. Adversely, both bacteria showed much lower VFA uptake rates than that of GAOs at all tested pH values (0.03-0.06 vs. 0.2-0.24 mol-C/C-mol biomass/h), possibly revealing the primary cause of frequent instability in the DS-EBPR process.

Sulfur Cycling and the Intestinal Microbiome

In this review, we focus on the activities transpiring in the anaerobic segment of the sulfur cycle occurring in the gut environment where hydrogen sulfide is produced. While sulfate-reducing bacteria are considered as the principal agents for hydrogen sulfide production, the enzymatic desulfhydration of cysteine by heterotrophic bacteria also contributes to production of hydrogen sulfide. For sulfate-reducing bacteria respiration, molecular hydrogen and lactate are suitable as electron donors while sulfate functions as the terminal electron acceptor. Dietary components provide fiber and macromolecules that are degraded by bacterial enzymes to monomers, and these are fermented by intestinal bacteria with the production to molecular hydrogen which promotes the metabolic dominance by sulfate-reducing bacteria. Sulfate is also required by the sulfate-reducing bacteria, and this can be supplied by sulfate- and sulfonate-containing compounds that are hydrolyzed by intestinal bacterial with the release of sulfate. While hydrogen sulfide in the intestinal biosystem may be beneficial to bacteria by increasing resistance to antibiotics, and protecting them from reactive oxygen species, hydrogen sulfide at elevated concentrations may become toxic to the host.

Maximum specific growth rate of anammox bacteria revisited

Anammox bacteria have long been considered to be slow-growing bacteria. However, it has recently been reported that they could grow much faster than previously thought when they were cultivated in a membrane bioreactor (MBR) with a step-wise decrease in the solid retention time (SRT). Here, we reevaluated the maximum specific growth rates (μ_max) of three phylogenetically distant anammox bacterial species (i.e. "Ca. Brocadia sinica", "Ca. Jettenia caeni" and "Ca. Scalindua sp.") by directly measuring 16S rRNA gene copy numbers using newly developed quantitative polymerase chain reaction (qPCR) assays. When free-living planktonic "Ca. B. sinica" and "Ca. J. caeni" cells were immobilized in polyvinyl alcohol (PVA) and sodium alginate (SA) gel beads and cultivated in an up-flow column reactor with high substrate loading rates at 37 °C, the μ_max were determined to be 0.33 ± 0.02 d^-1 and 0.18 d^-1 (corresponding doubling time of 2.1 day and 3.9 day) from the exponential increases in 16S rRNA genes copy numbers, respectively. These values were faster than the fastest growth rates reported for these species so far. The cultivation of anammox bacteria in gel beads was achieved less than one month without special cultivation method and selection pressure, and the exponential increase in 16S rRNA gene numbers was directly measured by qPCR with high reproducibility; therefore, the resulting μ_max values were considered accurate. Taken together, the fast growth is, therefore, considered to be an intrinsic kinetic property of anammox bacteria.

Kinetics of sulfate reduction and sulfide precipitation rates in sediments of a bar-built estuary (Pescadero, California)

The bar-built Pescadero Estuary in Northern California is a major fish rearing habitat, though recently threatened by near-annual fish kill events, which occur when the estuary transitions from closed to open state. The direct and indirect effects of hydrogen sulfide are suspected to play a role in these mortalities, but the spatial variability of hydrogen sulfide production and its link to fish kills remains poorly understood. Using flow-through reactors containing intact littoral sediment slices, we measured potential sulfate reduction rates, kinetic parameters of microbial sulfate reduction (Rmax, the maximum sulfate reduction rate, and Km, the half-saturation constant for sulfate), potential sulfide precipitation rates, and potential hydrogen sulfide export rates to water at four sites in the closed and open states. At all sites, the Michaelis-Menten kinetic rate equation adequately describes the utilization of sulfate by the complex resident microbial communities. We estimate that 94-96% of hydrogen sulfide produced through sulfate reduction precipitates in the sediment and that only 4-6% is exported to water, suggesting that elevated sulfide concentrations in water, which would affect fish through toxicity and oxygen consumption, cannot be responsible for fish deaths. However, the indirect effects of sulfide precipitates, which chemically deplete, contaminate, and acidify the water column during sediment re-suspension and re-oxidation in the transition from closed to open state, can be implicated in fish mortalities at Pescadero Estuary.

Predicting compositions of microbial communities from stoichiometric models with applications for the biogas process

BACKGROUND

Microbial communities are ubiquitous in nature and play a major role in ecology, medicine, and various industrial processes. In this study, we used stoichiometric metabolic modeling to investigate a community of three species, Desulfovibrio vulgaris, Methanococcus maripaludis, and Methanosarcina barkeri, which are involved in acetogenesis and methanogenesis in anaerobic digestion for biogas production.

RESULTS

We first constructed and validated stoichiometric models of the core metabolism of the three species which were then assembled to community models. The community was simulated by applying the previously described concept of balanced growth demanding that all organisms of the community grow with equal specific growth rate. For predicting community compositions, we propose a novel hierarchical optimization approach: first, similar to other studies, a maximization of the specific community growth rate is performed which, however, often leads to a wide range of optimal community compositions. In a secondary optimization, we therefore also demand that all organisms must grow with maximum biomass yield (optimal substrate usage) reducing the range of predicted optimal community compositions. Simulating two-species as well as three-species communities of the three representative organisms, we gained several important insights. First, using our new optimization approach we obtained predictions on optimal community compositions for different substrates which agree well with measured data. Second, we found that the ATP maintenance coefficient influences significantly the predicted community composition, especially for small growth rates. Third, we observed that maximum methane production rates are reached under high-specific community growth rates and if at least one of the organisms converts its substrate(s) with suboptimal biomass yield. On the other hand, the maximum methane yield is obtained at low community growth rates and, again, when one of the organisms converts its substrates suboptimally and thus wastes energy. Finally, simulations in the three-species community clarify exchangeability and essentiality of the methanogens in case of alternative substrate usage and competition scenarios.

CONCLUSIONS

In summary, our study presents new methods for stoichiometric modeling of microbial communities in general and provides valuable insights in interdependencies of bacterial species involved in the biogas process.

A review of sulfide emissions in sewer networks: overall approach and systemic modelling

The problems related to hydrogen sulfide in terms of deterioration of sewer networks, toxicity and odor nuisance have become very clear to the network stakeholders and the public. The hydraulic and (bio)chemical phenomena and parameters controlling sulfide formation, emission and their incidences in sewer networks are very complex. Recent research studies have been developed in gravity and pressure sewers and some transfer models have been published. Nevertheless, the models do not take into account all the physical phenomena influencing the emission process. After summing up the main scientific knowledge concerning the production, oxidation, transfer and emission processes, the present review includes: (i) a synthetic analysis of sulfide and hydrogen sulfide emission models in sewer networks, (ii) an estimation of their limit, (iii) perspectives to improve the modelling approach. It shows that sulfide formation and uptake models still need refinements especially for some phenomena such as liquid to gas mass transfer. Transfer models that have been published so far are purposely simplified and valid for simple systems. More efforts have to be undertaken in order to better understand the mechanisms and the dynamics of hydrogen sulfide production and emission in real conditions.

Patterns of sulfur isotope fractionation during microbial sulfate reduction

Studies of microbial sulfate reduction have suggested that the magnitude of sulfur isotope fractionation varies with sulfate concentration. Small apparent sulfur isotope fractionations preserved in Archean rocks have been interpreted as suggesting Archean sulfate concentrations of <200 μm, while larger fractionations thereafter have been interpreted to require higher concentrations. In this work, we demonstrate that fractionation imposed by sulfate reduction can be a function of concentration over a millimolar range, but that nature of this relationship depends on the organism studied. Two sulfate-reducing bacteria grown in continuous culture with sulfate concentrations ranging from 0.1 to 6 mm showed markedly different relationships between sulfate concentration and isotope fractionation. Desulfovibrio vulgaris str. Hildenborough showed a large and relatively constant isotope fractionation ((34) εSO 4-H2S ≅ 25‰), while fractionation by Desulfovibrio alaskensis G20 strongly correlated with sulfate concentration over the same range. Both data sets can be modeled as Michaelis-Menten (MM)-type relationships but with very different MM constants, suggesting that the fractionations imposed by these organisms are highly dependent on strain-specific factors. These data reveal complexity in the sulfate concentration-fractionation relationship. Fractionation during MSR relates to sulfate concentration but also to strain-specific physiological parameters such as the affinity for sulfate and electron donors. Previous studies have suggested that the sulfate concentration-fractionation relationship is best described with a MM fit. We present a simple model in which the MM fit with sulfate concentration and hyperbolic fit with growth rate emerge from simple physiological assumptions. As both environmental and biological factors influence the fractionation recorded in geological samples, understanding their relationship is critical to interpreting the sulfur isotope record. As the uptake machinery for both sulfate and electrons has been subject to selective pressure over Earth history, its evolution may complicate efforts to uniquely reconstruct ambient sulfate concentrations from a single sulfur isotopic composition.

Effect of influent COD/SO4(2-) ratios on UASB treatment of a synthetic sulfate-containing wastewater

The effect of the chemical oxygen demand/sulfate (COD/SO4(2-)) ratio on the anaerobic treatment of synthetic chemical wastewater containing acetate, ethanol, and sulfate, was investigated using a UASB reactor. The experimental results show that at a COD/SO4(2-) ratio of 20 and a COD loading rate of 25.2gCODL(-1)d(-1), a COD removal of as high as 87.8% was maintained. At a COD/SO4(2-) ratio of 0.5 (sulfate concentration 6000mgL(-1)), however, the COD removal was 79.2% and the methane yield was 0.20LCH4gCOD(-1). The conversion of influent COD to methane dropped from 80.5% to 54.4% as the COD/SO4(2-) ratio decreased from 20 to 0.5. At all the COD/SO4(2-) ratios applied, over 79.4% of the total electron flow was utilized by methane-producing archaea (MPA), indicating that methane fermentation was the predominant reaction. The majority of the methane was produced by acetoclastic MPA at high COD/SO4(2-) ratios and both acetoclastic and hydrogenthrophic MPA at low COD/SO4(2-) ratios. Only at low COD/SO4(2-) ratios were SRB species such as Desulfovibrio found to play a key role in ethanol degradation, whereas all the SRB species were found to be incomplete oxidizers at both high and low COD/SO4(2-) ratios.

A single exposure of sediment sulphate-reducing bacteria to oxytetracycline concentrations relevant to aquaculture enduringly disturbed their activity, abundance and community structure

AIM

Although feed medicated with antibiotics is widely used in animal production to prevent and treat bacterial infections, the effect of these drugs on nontarget anaerobic bacteria is unknown. We aimed to clarify whether a single exposure of sulphate-reducing bacteria (SRB) from a tilapia pond to oxytetracycline (OTC) concentrations relevant to aquaculture impacts their function, abundance and community structure.

METHODS AND RESULTS

To demonstrate changes in SO4(2-) content, SRB abundance, dsrB copy number and SRB diversity, sediment mesocosms were spiked with 5, 25, 50 and 75 mg OTC kg(-1) and examined for 30 days by means of ion chromatography, qPCR, cultivation and fluorescent in situ hybridization (FISH). On day 3, we measured higher SO4(2-) concentrations (ca. two-fold) and a reduction in dsrB copy numbers of approximately 50% in the treatments compared to the controls. After 30 days, a subtle yet measurable enrichment of bacteria from the order Desulfovibrionales occurred in mesocosms receiving ≥ 50 mg OTC kg(-1), notwithstanding that SRB counts decreased two orders of magnitude. OTC was dynamically and reversibly converted into 4-epioxytetracycline and other related compounds in a dose-dependent manner during the experiment.

CONCLUSIONS

A single exposure to rather high OTC concentrations triggered functional and structural changes in a SRB community that manifested quickly and persisted for a month.

SIGNIFICANCE AND IMPACT OF THE STUDY

This study improves our limited knowledge on the ecotoxicology of antibiotics in anaerobic environments.

Effect of sulfide, selenite and mercuric mercury on the growth and methylation capacity of the sulfate reducing bacterium Desulfovibrio desulfuricans

Cultures of the sulfate reducing bacteria Desulfovibrio desulfuricans were grown under anoxic conditions to study the effect of added sulfide, selenite and mercuric ions. A chemical trap consisting in a CuSO4 solution was used to control the poisoning effect induced by the bacterial production of hydrogen sulfide via the precipitation of CuS. Following the addition of Hg(2+), the formation of methylmercury (MeHg) was correlated to bacterial proliferation with most of MeHg found in the culture medium. A large fraction (50-80%) of added Hg(2+) to a culture ended up in a solid phase (Hg(0) and likely HgS) limiting its bioavailability to cells with elemental Hg representing ~40% of the solid. Following the addition of selenite, a small fraction was converted into Se(0) inside the cells and, even though the conversion to this selenium species increased with the increase of added selenite, it never reached more than 49% of the added amount. The formation of volatile dimethylselenide is suggested as another detoxification mechanism. In cultures containing both added selenite and mercuric ions, elemental forms of the two compounds were still produced and the increase of selenium in the residual fraction of the culture suggests the formation of mercuric selenite limiting the bioavailability of both elements to cells.

Interactions between nitrate-reducing and sulfate-reducing bacteria coexisting in a hydrogen-fed biofilm

To explore the relationships between denitrifying bacteria (DB) and sulfate-reducing bacteria (SRB) in H(2)-fed biofilms, we used two H(2)-based membrane biofilm reactors (MBfRs) with or without restrictions on H(2) availability. DB and SRB compete for H(2) and space in the biofilm, and sulfate (SO(4)(2-)) reduction should be out-competed when H(2) is limiting inside the biofilm. With H(2) availability restricted, nitrate (NO(3)(-)) reduction was proportional to the H(2) pressure and was complete at a H(2) pressure of 3 atm; SO(4)(2-) reduction began at H(2) ≥ 3.4 atm. Without restriction on H(2) availability, NO(3)(-) was the preferred electron acceptor, and SO(4)(2-) was reduced only when the NO(3)(-) surface loading was ≤ 0.13 g N/m(2)-day. We assayed DB and SRB by quantitative polymerase chain reaction targeting the nitrite reductases and dissimilatory sulfite reductase, respectively. Whereas DB and SRB increased with higher H(2) pressures when H(2) availability was limiting, SRB did not decline with higher NO(3)(-) removal flux when H(2) availability was not limiting, even when SO(4)(2-) reduction was absent. The SRB trend reflects that the SRB's metabolic diversity allowed them to remain in the biofilm whether or not they were reducing SO(4)(2-). In all scenarios tested, the SRB were able to initiate strong SO(4)(2-) reduction only when competition for H(2) inside the biofilm was relieved by nearly complete removal of NO(3)(-).

Anaerobic transformations of organic matter in collection systems

Anaerobic transformations of wastewater organic matter in the bulk water phase of collection system networks were investigated in laboratory-scale experiments. The wastewater was collected from three locations, which provided samples with different characteristics, ranging from young to mature. Hydrolysis, fermentation, and sulfate reduction were identified as the most important anaerobic processes. Significant quantities of readily biodegradable substrate were produced by hydrolysis of complex organic substrates. The readily biodegradable substrate was further fermented into volatile fatty acids (VFA). The rate of fermentation was found to be limited by the hydrolysis process. The readily biodegradable substrate generated was almost entirely composed of VFA, primarily acetic and propionic acids. A production of sulfide was observed in all experiments, demonstrating that part of the readily biodegradable substrate was consumed by sulfate respiration. The sulfide production was most pronounced in mature wastewater that had previously undergone extended anaerobic transport.

Comparative study of cellulose waste versus organic waste as substrate in a sulfate reducing bioreactor

The biodegradability and comparative effectiveness in treatment of acid mine drainage of ten locally available organic waste materials were examined. pH of AMD increased from 2.70 to 6.25, 7.10 and 7.50 with buffalo, cow and goat manures whereas cellulosic wastes increased the pH within the range of 4.83-5.32 in laboratory scale single substrate bioreactors. Significant reduction was observed in Eh, acidity and sulfate with manures in treated AMD. Maximum metal removal efficiency was 99.3%, 99.9%, 99.8%, 99.1%, 99.1%, and 73.8% for Fe, Cu, Zn, Ni, Co and Mn in maximum retention period of 10 days. The highest efficiency of metal removal was observed in bioreactors with manures as single substrate. The effectiveness of substrate depends on its biodegradation ability, the results with cellulosic waste indicates it may need more than 10 days to biodegrade. Biodegradability of organic waste was evaluated according to COD/SO(4)(2-) and C/N ratio and the ratios of 0.48-0.57 and 22.22-23.00 respectively were adequate parameters for activity of sulfate reducing bacteria and pollutant removal efficiency.

Performance of an anaerobic bioreactor with biomass recycling, continuously removing COD and sulphate from industrial wastes

A 30-l anaerobic bioreactor with biomass recycling was used to provide a continuous reduction in sulphate and a continuous COD removal from wastewater, which consisted of the effluent from an industrial pig fattening farm, enriched with technical FeSO(4) x 7H(2)O, a waste product from ferrous metallurgy. The concentrations of sulphate and COD in the wastewater amounted to 2.73 g l(-1) and 3.15 g l(-1), respectively. The HRT (hydraulic retention time) of 10-1.7d produced an extent of sulphate and COD reduction which totalled 98% and 88%, respectively. When the HRT was further shortened, the efficiency of reduction in sulphate and COD decreased. The maximum removal rate constants for both the pollutants, calculated by means of a modified Stover-Kincannon model, were 80.9 g COD l(-1)d(-1) and 41.8 g SO(4)(2-)l(-1)d(-1), the values of the saturation constants being 91.582 g COD l(-1)d(-1) and 42.398 g SO(4)(2-)l(-1)d(-1).

Biological treatment of highly contaminated acid mine drainage in batch reactors: Long-term treatment and reactive mixture characterization

Passive bioreactors involving sulphate-reducing bacteria (SRB) are a practical alternative technology to treat acid mine drainage (AMD). Careful selection of the organic carbon source is important to ensure performance and long-term efficiency of the treatment. However, a rigorous and methodical characterization to predict the biodegradability of organic substrates by SRB still needs to be investigated. In the present study, four natural organic materials were thoroughly characterized to assess their ability to serve as substrates and to find a parameter that links organic carbon sources with their biodegradability. Three reactive mixtures were then comparatively evaluated for their performance to treat a highly contaminated AMD in long-term (152 days) batch experiments. All three mixtures were successful for sulphate reduction and metal (Fe, Ni, Cd, Zn, and Mn) removal (91.8-99.8%). Higher efficiencies were observed in the reactors with 30% (w/w) cellulosic wastes (maple wood chips and sawdust) which decreased sulphate concentrations from 5500 mg/L to <1mg/L, than in reactors with 2-3% cellulosic wastes, where final sulphate concentrations were in the range 2000-2750 mg/L. Organic material characterization indicated that higher C/N ratios, chemical oxygen demand (COD)/SO(4)(2-) ratios and dissolved organic carbon (DOC)/SO(4)(2-) ratios were associated with better sulphate-reducing conditions and metal removal. This work suggests that C/N and DOC/SO(4)(2-) ratios considered together are key parameters to assess the biodegradability of natural organic wastes under sulphate-reducing conditions.

Hydrogen sulfide production from elemental sulfur byDesulfovibrio desulfuricans in an anaerobic bioreactor

Feasibility of elemental sulfur reduction by Desulfovibrio desulfuricans in anaerobic conditions in a stirred reactor was studied. Hydrogen was used as energy source, whereas the carbonated species were bicarbonate and yeast extract. Attention was paid to reactor engineering aspects, biofilm formation on the sulfur surface, hydrogen sulfide formation rate and kinetics limitations of the sulfur reduction. D. desulfuricans formed stable biofilms on the sulfur surface. It was found that active sulfur surface availability limits the reaction rate. The reaction rate was first order with respect to sulfur and hydrogen velocity had no effect in the reaction rate for the range 8.2 x 10(-2) to 4.1 x 10(-1) Nm(3) m(-2) min(-1). At a superficial gas velocity (u(G)) = 3.1 x 10(-2) Nm(3) m(-2) min(-1), H(2)S(g) production rate decreased due to a deficient H(2)S stripping. A maximum H(2)S(g) production rate of 2.1 g H(2)S L(-1) d(-1) was achieved during 5 days with an initial sulfur density of 4.7% (w/v).

Passive treatment of acid mine drainage in bioreactors using sulfate-reducing bacteria: critical review and research needs

Acid mine drainage (AMD), characterized by low pH and high concentrations of sulfate and heavy metals, is an important and widespread environmental problem related to the mining industry. Sulfate-reducing passive bioreactors have received much attention lately as promising biotechnologies for AMD treatment. They offer advantages such as high metal removal at low pH, stable sludge, very low operation costs, and minimal energy consumption. Sulfide precipitation is the desired mechanism of contaminant removal; however, many mechanisms including adsorption and precipitation of metal carbonates and hydroxides occur in passive bioreactors. The efficiency of sulfate-reducing passive bioreactors is sometimes limited because they rely on the activity of an anaerobic microflora [including sulfate-reducing bacteria (SRB)] which is controlled primarily by the reactive mixture composition. The most important mixture component is the organic carbon source. The performance of field bioreactors can also be limited by AMD load and metal toxicity. Several studies conducted to find the best mixture of natural organic substrates for SRB are reviewed. Moreover, critical parameters for design and long-term operation are discussed. Additional work needs to be done to properly assess the long-term efficiency of reactive mixtures and the metal removal mechanisms. Furthermore, metal speciation and ecotoxicological assessment of treated effluent from on-site passive bioreactors have yet to be performed.

Modeling the influence of decomposing organic solids on sulfate reduction rates for iron precipitation

The influence of decomposing organic solids on sulfate (S04(2-)) reduction rates for metals precipitation in sulfate-reducing systems, such as in bioreactors and permeable reactive barriers for treatment of acid mine drainage, is modeled. The results are evaluated by comparing the model simulations with published experimental data for two single-substrate and two multiple-substrate batch equilibrium experiments. The comparisons are based on the temporal trends in SO4(2-), ferrous iron (Fe2+), and hydrogen sulfide (H2S) concentrations, as well as on rates of sulfate reduction. The temporal behaviors of organic solid materials, dissolved organic substrates, and different bacterial populations also are simulated. The simulated results using Contois kinetics for polysaccharide decomposition, Monod kinetics for lactate-based sulfate reduction, instantaneous or kinetically controlled precipitation of ferrous iron mono-sulfide (FeS), and partial volatilization of H2S to the gas phase compare favorably with the experimental data. When Contois kinetics of polysaccharide decomposition is replaced by first-order kinetics to simulate one of the single-substrate batch experiments, a comparatively poorer approximation of the rates of sulfate reduction is obtained. The effect of sewage sludge in boosting the short-term rate of sulfate reduction in one of the multiple-substrate experiments also is approximated reasonably well. The results illustrate the importance of the type of kinetics used to describe the decomposition of organic solids on metals precipitation in sulfate-reducing systems as well as the potential application of the model as a predictive tool for assisting in the design of similar biochemical systems.

Chemical characterisation of natural organic substrates for biological mitigation of acid mine drainage

The current approach of the biological treatment of acid mine drainage by means of a passive remediation system involves the choice of an appropriate organic substrate as electron donor for sulphate reducers. Nowadays this selection is one of the critical steps in the performance of such treatment, as this depends to a great extent on the degradability of the organic substrate. Thus, a prior characterisation of the organic substrate predicting its biodegradability would be desirable before embarking on an extensive large-scale application. The aim of this study was to correlate the chemical composition (lignin content) of four different natural organic substrates (compost, sheep and poultry manures, oak leaf) and their capacity to sustain bacterial activity in an attempt to predict biodegradation from chemical characterisation. The results showed that the lower the content of lignin in the organic substrate, the higher its biodegradability and capacity for developing bacterial activity. Of the four organic materials, sheep and poultry manures and oak leaf evolved reducing conditions and sustained active sulphidogenesis, which coupled with the decrease in sulphate concentration indicated bacterial activity. Sheep manure was clearly the most successful organic material as electron donor (sulphate removal >99%), followed by poultry manure and oak leaf (sulphate removal of 80%). Compost appeared to be too poor in carbon to promote sulphate-reducing bacteria activity by itself. Column experiments emphasised the importance of considering the residence time as a key factor in the performance of continuous systems. With a residence time of 0.73 days, sheep manure did not promote sulphidogenesis. However, extending residence time to 2.4 and 9.0 days resulted in an increase in the sulphate removal to 18% and 27%, respectively.

Metabolic interactions between methanogenic consortia and anaerobic respiring bacteria

Most types of anaerobic respiration are able to outcompete methanogenic consortia for common substrates if the respective electron acceptors are present in sufficient amounts. Furthermore, several products or intermediate compounds formed by anaerobic respiring bacteria are toxic to methanogenic consortia. Despite the potentially adverse effects, only few inorganic electron acceptors potentially utilizable for anaerobic respiration have been investigated with respect to negative interactions in anaerobic digesters. In this chapter we review competitive and inhibitory interactions between anaerobic respiring populations and methanogenic consortia in bioreactors. Due to the few studies in anaerobic digesters, many of our discussions are based upon studies of defined cultures or natural ecosystems.

Modeling reduction of uranium U(VI) under variable sulfate concentrations by sulfate-reducing bacteria

The kinetics for the reduction of sulfate alone and for concurrent uranium [U(VI)] and sulfate reduction, by mixed and pure cultures of sulfate-reducing bacteria (SRB) at 21 +/- 3 degrees C were studied. The mixed culture contained the SRB Desulfovibrio vulgaris along with a Clostridium sp. determined via 16S ribosomal DNA analysis. The pure culture was Desulfovibrio desulfuricans (ATCC 7757). A zero-order model best fit the data for the reduction of sulfate from 0.1 to 10 mM. A lag time occurred below cell concentrations of 0.1 mg (dry weight) of cells/ml. For the mixed culture, average values for the maximum specific reaction rate, V(max), ranged from 2.4 +/- 0.2 micromol of sulfate/mg (dry weight) of SRB. h(-1)) at 0.25 mM sulfate to 5.0 +/- 1.1 micromol of sulfate/mg (dry weight) of SRB. h(-1) at 10 mM sulfate (average cell concentration, 0.52 mg [dry weight]/ml). For the pure culture, V(max) was 1.6 +/- 0.2 micromol of sulfate/mg (dry weight) of SRB. h(-1) at 1 mM sulfate (0.29 mg [dry weight] of cells/ml). When both electron acceptors were present, sulfate reduction remained zero order for both cultures, while uranium reduction was first order, with rate constants of 0.071 +/- 0.003 mg (dry weight) of cells/ml. min(-1) for the mixed culture and 0.137 +/- 0.016 mg (dry weight) of cells/ml. min(-1) (U(0) = 1 mM) for the D. desulfuricans culture. Both cultures exhibited a faster rate of uranium reduction in the presence of sulfate and no lag time until the onset of U reduction in contrast to U alone. This kinetics information can be used to design an SRB-dominated biotreatment scheme for the removal of U(VI) from an aqueous source.

Physiologic studies with the sulfate-reducing bacterium Desulfovibrio desulfuricans: evaluation for use in a biofuel cell

The growth kinetics of the sulfate-reducing bacteria Desulfovibrio desulfuricans Essex 6 was investigated under various conditions for potential use in a microbial fuel cell that recovers electrons generated from the reduction of sulfate to hydrogen sulfide. Hydrogen sulfide was found to inhibit growth and decrease both the growth yields and the sulfate-specific reduction rate. Hydrogen sulfide inhibition was direct, reversible, and not due to limitation by iron deficiency. A high initial lactate concentration also retarded bacterial growth, reduced the specific sulfate reduction rates, and gave variable biomass growth yields. This effect resulted from a bottleneck in the lactate oxidation pathway which induced the production of the secondary product butanol. The use of pyruvate as a carbon source was more advantageous than lactate in terms of growth rate and biomass growth yields, with only a slight decrease in the rate of specific sulfate reduction. For equal biomass, a slightly higher current density was generated from lactate than pyruvate, but pyruvate required nearly 40% less sulfate.