Eyal E, Lum G, Bahar I. The anisotropic network model web server at 2015 (ANM 2.0).
Bioinformatics 2015;
31:1487-9. [PMID:
25568280 PMCID:
PMC4410662 DOI:
10.1093/bioinformatics/btu847]
[Citation(s) in RCA: 123] [Impact Index Per Article: 13.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2014] [Revised: 12/11/2014] [Accepted: 12/21/2014] [Indexed: 11/12/2022] Open
Abstract
SUMMARY
The anisotropic network model (ANM) is one of the simplest yet powerful tools for exploring protein dynamics. Its main utility is to predict and visualize the collective motions of large complexes and assemblies near their equilibrium structures. The ANM server, introduced by us in 2006 helped making this tool more accessible to non-sophisticated users. We now provide a new version (ANM 2.0), which allows inclusion of nucleic acids and ligands in the network model and thus enables the investigation of the collective motions of protein-DNA/RNA and -ligand systems. The new version offers the flexibility of defining the system nodes and the interaction types and cutoffs. It also includes extensive improvements in hardware, software and graphical interfaces.
AVAILABILITY AND IMPLEMENTATION
ANM 2.0 is available at http://anm.csb.pitt.edu
CONTACT
eran.eyal@sheba.health.gov.il, eyal.eran@gmail.com.
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