Effect of management of organic wastes on inactivation of Brassica nigra and Fusarium oxysporum f.sp. lactucae using soil biosolarization

Flooding soil with biogas slurry suppresses root-knot nematodes and alters soil nematode communities

Root-knot nematodes (RKNs) pose a serious threat to crop production. Flooding soil with biogas slurry, combined with soil heating before crop planting, has the potential for RKN disease suppression. However, the actual effect of this method has not been verified under field conditions. Here, we present the results of a two-year field experiment in a greenhouse demonstrating the control effect on RKN disease and plant growth using this method, as well as its influence on the soil nematode community. Four treatments were set: untreated control (CK), local control method for RKN (CC), soil flooded with 70 % biogas slurry (BS70), and soil flooded with undiluted biogas slurry (BS100). In the first year, all three RKN control treatments significantly reduced the root-knot index (p < 0.05). In the next year, only BS70 and BS100 still presented significantly suppressed effects (p < 0.05), and it was more obvious under BS70 with a relative control effect of 74.6 %. In the first year, BS70 and BS100 significantly inhibited the plant height of watermelon (p < 0.05). In the next year, however, all three RKN control treatments promoted the growth of watermelon, and their stem diameter was significantly greater than that of CK. The application of biogas slurry (BS70 and BS100) significantly increased nematode richness and the Shannon index in the second year (p < 0.05). However, the structure index showed no significant difference among treatments (p > 0.05), indicating that biogas slurry application did not increase the soil food web complex. Principal component analysis showed that the application of biogas slurry changed the nematode community, especially under BS70, which presented a more lasting influence. The high-level input of biogas slurry also caused soil NH4+-N and heavy-metal and arsenic accumulation in the first year, but these soil-pollution risks disappeared in the second year.

The effect of circular soil biosolarization treatment on the physiology, metabolomics, and microbiome of tomato plants under certain abiotic stresses

Soil biosolarization (SBS) is an alternative technique for soil pest control to standard techniques such as soil fumigation and soil solarization (SS). By using both solar heating and fermentation of organic amendments, faster and more effective control of soilborne pathogens can be achieved. A circular economy may be created by using the residues of a given crop as organic amendments to biosolarize fields that produce that crop, which is termed circular soil biosolarization (CSBS). In this study, CSBS was employed by biosolarizing soil with amended tomato pomace (TP) residues and examining its impact on tomato cropping under conditions of abiotic stresses, specifically high salinity and nitrogen deficiency. The results showed that in the absence of abiotic stress, CSBS can benefit plant physiological performance, growth and yield relative to SS. Moreover, CSBS significantly mitigated the impacts of abiotic stress conditions. The results also showed that CSBS impacted the soil microbiome and plant metabolome. Mycoplana and Kaistobacter genera were found to be positively correlated with benefits to tomato plants health under abiotic stress conditions. Conversely, the relative abundance of the orders RB41, MND1, and the family Ellin6075 and were negatively correlated with tomato plants health. Moreover, several metabolites were significantly affected in plants grown in SS- and CSBS-treated soils under abiotic stress conditions. The metabolite xylonic acid isomer was found to be significantly negatively correlated with tomato plants health performance across all treatments. These findings improve understanding of the interactions between CSBS, soil ecology, and crop physiology under abiotic stress conditions.

Sunflower Seed Husk as Promising By-Product for Soil Biodisinfestation Treatments and Fertility Improvement in Protected Lettuce Crop

One of the major challenges in biodisinfestation treatments against soilborne pathogens is the selection of the proper organic amendments and mixture features. The use of agro-industrial by-products is a sustainable alternative with proven efficacy, but the availability has to be considered in terms of location and quantity. Sunflower seed is one of the five major oil crops widely cultivated and the husk constitutes a significant part that is discarded. This by-product brings together the features to be considered an interesting organic amendment in agricultural soils because of its lignocellulose content, but no references have been found in this field. In this study, sunflower seed husk was used with fresh cow manure in biodisinfestation treatments, alone or combined with other by-products (rapeseed cake, beer bagasse and wheat bran). The assay was performed in summer in a commercial greenhouse with significant yield losses in lettuce crops caused by the root-knot nematode Meloidogyne incognita. Four different amendment mixtures were applied which included 3kg/m2 cow manure, as common waste, and 1 kg/m2 of by-products (dry weight), considering 6mgC/g soil in all treatments but different C/N ratio (23, 29, 31, 34) and by-products. Data was collected in three moments: (i) before and (ii) after biodisinfestation treatments and (iii) after harvesting the first crop after biodisinfestations. Crop damage was assessed through root galling index and the number of eggs in roots. The effects on the pathogen population and the whole soil nematode community were assessed along with some physicochemical and soil microbiological variables (respiration rate, microbial organic C, water-soluble organic C and physiological profile of heterotrophic bacteria through Biolog Ecoplates™). All treatments reported effectiveness in disease control without significant differences among them, but among times. However, soil temperatures during biodisinfestations were higher at higher C/N ratios and fertility variables also increased in these cases, mainly in the treatment with husk as the only by-product. Sunflower seed husk proved to be an interesting source of organic C to improve both biodisinfestation treatments and soil fertility in humid temperate climate zones.

Quantifying the effects of anaerobic soil disinfestation and other biological soil management strategies on nitrous oxide emissions from raised bed plasticulture tomato production

Soilborne pests are a major obstacle that must be overcome for the production of horticultural crops. Methyl bromide (MBr) was an effective preplanting soil broad-spectrum biocide, but its use has been banned due to its role in depleting the ozone layer. As a result, sustainable alternative methods for controlling soilborne pathogens and pests are needed. Nitrous oxide (N₂ O) emissions are of concern in crop production due to the role of N₂ O as a greenhouse gas. Agricultural lands are known sources for emission of N₂ O into the atmosphere. Emissions are related to many environmental factors as well as fertilization and fumigation practices. This study evaluated the influence of different alternatives to MBr on N₂ O emissions throughout a tomato production season in two locations representative of southern and northern Florida. We evaluated eight soil management practices, including (a) untreated controls; (b) chemical soil fumigation; (c) anaerobic soil disinfestation using molasses (M) + composted poultry litter and (d and e) M + composted yard waste (CYW, at two rates); (f) Soil Symphony Amendment (SSA), a commercially available mix of microbes and nutrients; (g) CYW alone; and (h) CYW + SSA. Nitrous oxide emissions were measured throughout the cropping season. Emissions were highest on the day of planting (Day 21), ranging from 213 to 1,878 μg m^-2 h^-1 , likely due to the release of N₂ O that had accumulated under the totally impermeable film when it was punctured for planting. However, statistical significance varied between sites. Estimated cumulative emissions of N₂ O throughout the production season ranged from 1.3 to 4.8 kg N₂ O-N ha^-1 .

Soil Application of Almond Residue Biomass Following Black Soldier Fly Larvae Cultivation

Insect farming has the potential to transform abundant residual biomass into feed that is compatible with non-ruminant animal production systems. However, insect cultivation generates its own by-products. There is a need to find valuable and sustainable applications for this material to enable commercial-scale insect farming. Soil application of by-products, which may be either basic broadcasting incorporation or part of a sustainable soil borne pest management practice, such as biosolarization, could offer an agricultural outlet. The objective of this study was to assess the potential of applying black soldier fly larvae (BSFL)-digested substrate as soil amendment for soil biosolarization and evaluate its impact on soil health. Sandy loam (SL) and sandy clay loam (CL) soils amended with BSFL-digested almond processing residues, i.e., spent pollinator hulls (SPH), at 2% dry weight (dw) were incubated under aerobic and anaerobic conditions for 15 days under a daily fluctuating temperature-interval (30–50°C). The microbial respiration, pH, electrical conductivity, volatile fatty acids, macronutrients, and germination index using radish seeds (Raphanus sativus L.) were quantified to assess the soil health after amendment application. Incubation showed a statistically significant (p &lt; 0.05) increase in electrical conductivity related to amendment addition and a decrease potentially linked to microbiological activity, i.e., sequestering of ions. Under aerobic conditions, SPH addition increased the CO2-accumulation by a factor of 5–6 compared to the non-amended soils in SL and CL, respectively. This increase further suggests a higher microbiological activity and that SPH behaves like a partially stabilized organic material. Under anaerobic conditions, CO2-development remained unchanged. BSFL-digested residues significantly increased the carbon, nitrogen, C/N, phosphate, ammonium, and potassium in the two soil types, replenishing soils with essential macronutrients. However, greenhouse trials with lettuce seeds (Lactuca sativa) lasting 14 days resulted in a decrease of the biomass by 44.6 ± 35.4 and 35.2 ± 25.3% for SL and CL, respectively, compared to their respective non-amended soil samples. This reduction of the biomass resulted from residual phytotoxic compounds, indicating that BSFL-digested SPH have the potential to be used for biosolarization and as soil amendments, depending on the concentration and mitigation strategies. Application and environmental conditions must be carefully selected to minimize the persistence of soil phytotoxicity.

Biodisinfestation With Agricultural By-Products Developed Long-Term Suppressive Soils Against Meloidogyne incognita in Lettuce Crop

Soil biodisinfestation is the process generated after the incorporation of organic amendments followed by a plastic cover to control soilborne diseases. Among organic amendments, the use of agricultural by-products could be an interesting alternative as it promotes circular economy. In this study, beer bagasse and defatted rapeseed cake together with fresh cow manure were incorporated into the soil (1.5, 0.5, and 20 kg/m2, fresh weight, respectively) to assess their capacity to reduce disease incidence caused by the root-knot nematode Meloidogyne incognita in protected lettuce crops and develop suppressive soils. The trial was conducted in a commercial greenhouse for 7 weeks during which temperature was continuously recorded at three different soil depths (15, 30, and 45 cm). Short- and long-term effects were assessed: before treatment, after treatment, after first crop post-treatment and one year post-treatment. Disease incidence and changes in nematode community structure were analyzed along with microbiological properties and general physicochemical parameters. After biodisinfestation, microbiological activity significantly increased in the treated soils and changes in the nematode community structure were detected in detriment of M. incognita and other plant-parasitic nematodes. These effects were more apparent after the first crop post-treatment than right after biodisinfestation. In the first crop after biodisinfestation, lettuce yield increased in the treated plots and root galling indices were significantly lower. One year after treatment, differences between treatments could be observed in the incidence of the damage caused by M. incognita that remained lower in the treated plots. In this trial, the addition of beer bagasse and rapeseed cake along with fresh manure in biodisinfestation treatment demonstrated nematicidal effects against M. incognita. Moreover, we suggest that the compounds released during the degradation of these by-products and the sub-lethal temperatures achieved in this trial during biodisinfestation (&lt;42°C) were the key to develop suppressive soils in the long-term.

Identification and evaluation of volatile organic compounds evolved during solarization with almond hull and shell amendments

Biosolarization is a fumigation alternative that combines solarization with organic amendments to suppress pests and pathogens in agricultural soils. The generation of volatile biopesticides in the soil, stemming from biodegradation of carbon-rich amendments, contributes to pest inactivation. The purpose of this study was to (1) profile volatiles that may contribute to pest control under field conditions and (2) measure volatile compounds that may present nuisance or exposure risks for humans near biosolarized fields where larger-scale anaerobic degradation of residues occurs. Biosolarization was performed using prominent agricultural waste products, hulls and shells from several almond varieties as soil amendments. After 8 days of biosolarization, soil samples were analyzed using solid phase microextraction-gas chromatography coupled to mass spectrometry. Volatile fatty acids and ketones made up 85% of biosolarized soil headspace, but terpenes, alcohols, aldehydes, esters, and sulfides were detected as well. Different almond variety residues produced distinct volatile profiles, and nonpareil-amended soils had a much richer and more diverse profile, as well as a fivefold greater VOC abundance, than pollinator-amended soil. Identified volatiles with low US recommended exposure limits were quantified via internal and external standards, including acetic acid, 2-butanone, butanal, hexanal, and phenylethyl alcohol. Across biosolarization treatments, headspace concentrations of selected compounds did not exceed 1 mg/m³. This study demonstrates that almond processing residues recycled into the soil as biosolarization substrates produce a high diversity of bioactive degradation compounds on a field scale, with low potential of non-target risks to humans.Implications: This manuscript has implications for two policy goals in the state of California: to reduce landfill disposal of organic waste, and to reduce emissions from soil fumigants. Almond hulls and shells are an increasing source of organic waste, and novel recycling strategies must be developed. Here, recycling almond residues as soil amendments promoted the rapid formation of VOCs which may act as alternatives to chemical fumigants. Headspace concentrations of potentially deleterious VOCs produced from treated soil were low, on the order of parts per billion. These results will help achieve policy goals by expanding waste usage and fumigation alternatives.

Characterization of digestate microbial community structure following thermophilic anaerobic digestion with varying levels of green and food wastes

The properties of digestates generated through anaerobic digestion are influenced by interactions between the digester microbial communities, feedstock properties and digester operating conditions. This study investigated the effect of varying initial feedstock carbon to nitrogen (C/N) ratios on digestate microbiota and predicted abundance of genes encoding lignocellulolytic activity. The C/N ratio had a significant impact on the digestate microbiome. Feedstocks with intermediate C/N ratio (20–27) (where higher biomethane potential was observed) showed higher relative abundance of archaea compared to feedstocks with C/N ratios at 17 and 34. Within microbial networks, four microbial clusters and eight connector microorganisms changed significantly with the C/N ratio (P &lt; 0.05). Feedstocks with C/N &lt; 23 were richer in organisms from the family Thermotogaceae and genus Caldicoprobacter and enhanced potential for degradation of maltose, galactomannans, melobiose and lactose. This study provides new insights into how anaerobic digestion conditions relate to the structure and functional potential of digester microbial communities, which may be relevant to both digester performance and subsequent utilization of digestates for composting or amending soil.

Almond by-product composition impacts the rearing of black soldier fly larvae and quality of the spent substrate as a soil amendment

BACKGROUND

Insect biomass is a sustainable alternative to traditional animal feeds, particularly when insects are produced on low-value high-volume agricultural by-products. Seven samples of almond by-product (hulls and shells) were obtained from processors in California and investigated for larvae production. Experiments were completed with and without larvae and spent substrate samples were assessed for their potential as soil amendments based on standard compost quality indicators.

RESULTS

On average, specific larvae growth and average larval harvest weight were 158% and 109% higher, respectively, when larvae were reared on Monterey and pollinator hulls compared to nonpareil hulls and mixed shells. Larvae methionine and cystine contents were highest when larvae were reared on Monterey hulls and mixed shells, respectively. Available phytonutrients in spent substrate were affected by feedstock sample and larvae rearing. Spent nonpareil substrate without larvae had the highest NH₄ -N levels and spent pollinator substrate incubated without larvae had the highest PO₄ -P levels. Spent mixed shell substrate had the lowest availability of phytonutrients.

CONCLUSION

The findings demonstrate that by-product composition has a significant impact on larvae growth and the properties of the spent substrate, and that spent substrate from larvae rearing requires further stabilization before application as a soil amendment. © 2020 The Authors. Journal of The Science of Food and Agriculture published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.

Organic Amendments for Pathogen and Nematode Control

The loss of methyl bromide as a soil fumigant and minimal advances in the development and registration of new chemical fumigants has resulted in a resurgence of interest in the application of organic amendments (OAs) for soilborne plant pathogen and plant-parasitic nematode management. Significant progress has been made in the characterization of OAs, application of strategies for their use, and elucidation of mechanisms by which they suppress soilborne pests. Nonetheless, their utility is limited by the variability of disease control, expense, and the logistics of introducing them into crop production systems. Recent advances in molecular techniques have led to significant progress in the elucidation of the role of bacteria and fungi and their metabolic products on disease suppression with the addition of OAs. Biosolarization and anaerobic soil disinfestation, developed to manipulate systems and favor beneficial microorganisms to maximize their impact on plant pathogens, are built on a strong historical research foundation in OAs and the physical, chemical, and biological characteristics of disease-suppressive soils. This review focuses on recent applications of OAs and their potential for the management of soilborne plant pathogens and plant-parasitic nematodes, with emphasis primarily on annual fruit and vegetable production systems.

Changes of Fusarium oxysporum f.sp. lactucae levels and soil microbial community during soil biosolarization using chitin as soil amendment

Regulatory pressure along with environmental and human health concerns drive the development of soil fumigation alternatives such as soil biosolarization (SBS). SBS involves tarping soil that is at field capacity with a transparent film following amendment with certain organic materials. Heating via the greenhouse effect results in an increase of the soil temperature. The organic amendments can promote microbial activity that can enhance pest inactivation by depleting oxygen, producing biopesticidal fermentation products, and competing with pests. The properties of the organic amendments can heavily influence the type and magnitude of these effects. This study evaluated the viability of chitin as a novel SBS soil amendment to influence soil fungal and bacterial microbial communities, including control of the plant pathogen Fusarium oxysporum f.sp. lactucae (FOL). Changes to FOL and the broader soil microbiota were monitored in response to biosolarization using 0.1% (by dry weight) amendment with chitin (Rootguard). FOL suppression was only observed in chitin amended soils that were incubated at room temperature, not under solarized conditions. Conversely, it decreased solarization efficacy in the upper (0–10 cm) soil layer. The presence of chitin also showed increase in FOL under anaerobic and fluctuating temperature regime conditions. Biosolarization with chitin amendment did exhibit an impact on the overall soil microbial community. The fungal genus Mortierella and the bacterial family Chitinophagaceae were consistently enriched in biosolarized soils with chitin amendment. This study showed low potential FOL suppression due chitin amendment at the studied levels. However, chitin amendment showed a higher impact on the fungal community than the bacterial community. The impact of these microbial changes on crop protection and yields need to be studied in the long-term.

Almond processing residues as a source of organic acid biopesticides during biosolarization

Biosolarization utilizes organic amendments to produce biopesticide compounds in soil that can work in tandem with other stresses to inactivate agricultural pests. The prospect of using by-products from industrial almond processing as amendments for biosolarization was assessed. Soil mesocosms were used to simulate biosolarization using various almond by-products, application rates, and incubation times. Several potentially biopesticidal organic acids were identified and quantified in the soil, and the toxicity of soil extracts was evaluated for the root lesion nematode (Pratylenchus vulnus). It was determined that both almond hulls and a mixture of hulls and shells harbored several acids, the concentration of which was enhanced 1-7 fold via fermentation by native soil microbes. Organic acid concentration in the soil showed a significant linear relationship with the quantity of waste biomass amended. Extracts from soils containing at least 2.5% incorporated biomass by dry weight showed a 84-100% mortality of nematodes, which corresponded to acid concentrations 0.75 mg/g (2.0 g/L) or greater. This study showed that almond processing by-products - hulls and a hull and shell mixture - were suitable amendments for control of P. vulnus and potentially other soil agricultural pests in the context of biosolarization.

The initial soil microbiota impacts the potential for lignocellulose degradation during soil solarization

AIMS

Soil biosolarization (SBS) is a pest control technology that includes the incorporation of organic matter into soil prior to solarization. The objective of this study was to measure the impact of the initial soil microbiome on the temporal evolution of genes encoding lignocellulose-degrading enzymes during SBS.

METHODS AND RESULTS

Soil biosolarization field experiments were completed using green waste (GW) as a soil amendment and in the presence and absence of compost activating inoculum. Samples were collected over time and at two different soil depths for measurement of the microbial community and the predicted lignocellulosic-degrading microbiome. Compost inoculum had a significant positive effect on several predicted genes encoding enzymes involved in cellulose, hemicellulose and lignin degradation. These included beta-glucosidase, endo-1,3(4)-beta-glucanase, alpha-galactosidase and laccase.

CONCLUSION

Amendment of micro-organisms found in compost to soil prior to SBS enhanced the degradation potential of cellulose, hemicellulose and lignin found in GW.

SIGNIFICANCE AND IMPACT OF THE STUDY

The type of organic matter amended and its biotransformation by soil micro-organisms impact the efficacy of SBS. The results suggest that co-amending highly recalcitrant biomass with micro-organisms found in compost improves biomass conversion during SBS.