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Sui X, Yu XY. An evaluation of static ToF-SIMS analysis of environmental organics. Heliyon 2024; 10:e37913. [PMID: 39315229 PMCID: PMC11417316 DOI: 10.1016/j.heliyon.2024.e37913] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2024] [Revised: 09/10/2024] [Accepted: 09/12/2024] [Indexed: 09/25/2024] Open
Abstract
Time-of-flight secondary ion mass spectrometry (ToF-SIMS) has been extensively used in surface analysis due to its high mass resolution, sensitivity, and mass spectral imaging capabilities. Static ToF-SIMS has mainly been used for solid material analysis; however, its application in environmental organics is limited. During SIMS spectral analysis, relative mass accuracy and measurement repeatability are key factors for obtaining reliable speciation and acquiring chemical insights of the specimens. Herein, we provide an evaluation of four environmentally relevant organic systems, including glyoxal, pyruvic acid, oil-in-water emulsion, and carbon dioxide (CO2) capture solvent (i.e., N-2-ethoxyethyl-3-morpholinopropan-1-amine, EMMPA), to show the spectral measurement repeatability when using static ToF-SIMS. First, sample preparation is essential in acquiring accurate and reproducible results in ToF-SIMS analysis. The mass spectral results show that characteristic peaks observed can be distinguished with reasonable confidence by comparing the observed mass to charge ratios (m/z) to theoretical ones. The statistical analysis of peak areas indicates that the peak area and/or peak height measurement ratios are satisfactory among replicates. Compared with previous studies, the bismuth cluster primary ion beam, namely Bi3 +, has less fragmentation than Bi+. Therefore, Bi3 + is deemed more suitable for organic analysis using static SIMS. Our results show that ToF-SIMS offers a viable approach to study environmental organics including but not limited to aqueous aerosols, wastewater emulsions, and CO2 capture solvents. It is expected that future studies will expand organic speciation with high fidelity due to the continued advancement of SIMS as a sensitive analysis technique.
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Affiliation(s)
- Xiao Sui
- College of Geography and Environment, Shandong Normal University, Jinan, 250358, China
| | - Xiao-Ying Yu
- Materials Science and Technology Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37830-6136, United States
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2
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Yu X, Yao J, Buck EC, Zhu Z. In situ liquid SIMS analysis of uranium oxide. SURF INTERFACE ANAL 2020. [DOI: 10.1002/sia.6799] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Xiao‐Ying Yu
- Energy Processes and Materials Division, Energy and Environment DirectoratePacific Northwest National Laboratory Richland WA 99354 USA
| | - Jennifer Yao
- Energy Processes and Materials Division, Energy and Environment DirectoratePacific Northwest National Laboratory Richland WA 99354 USA
| | - Edgar C. Buck
- Nuclear Chemistry and Engineering Division, Energy and Environment DirectoratePacific Northwest National Laboratory Richland WA 99354 USA
| | - Zihua Zhu
- Scientific Resources Division, W. R. Wiley Environmental Molecular Science LaboratoryPacific Northwest National Laboratory Richland WA 99354 USA
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3
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Yao J, Ossana A, Chun J, Yu XY. In situ liquid SEM imaging analysis revealing particle dispersity in aqueous solutions. J Microsc 2020; 279:79-84. [PMID: 32412130 DOI: 10.1111/jmi.12904] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2020] [Revised: 04/22/2020] [Accepted: 05/11/2020] [Indexed: 11/28/2022]
Abstract
A quantitative description on dispersity of boehmite (γ-AlOOH) particles, a key component for waste slurry at Hanford sites, can provide useful knowledge for understanding various physicochemical nature of the waste. In situ liquid scanning electron microscopy (SEM) was used to evaluate the dispersity of particles in aqueous conditions using a microfluidic sample holder, System for Analysis at Liquid Vacuum Interface (SALVI). Secondary electron (SE) images and image analyses were performed to determine particle centroid locations and the distance to the nearest neighbour particle centroid, providing reliable rescaled interparticle distances as a function of ionic strength in acidic and basic conditions. Our finding of the particle dispersity is consistent with physical insights from corresponding particle interactions under physicochemical conditions, demonstrating delicate changes in dispersity of boehmite particles based on novel in situ liquid SEM imaging and analysis. LAY DESCRIPTION: In situ liquid scanning electron microscopy (SEM) was used to determine the interparticle distance of boehmite (γ-AlOOH) particles, a key component for waste slurry at Hanford sites. This type of quantitative measurement is important to understand various physicochemical nature of the radiological waste containing boehmite. In situ liquid SEM was enabled by a unique vacuum compatible microfluidic cell, System for Analysis at Liquid Vacuum Interface (SALVI). We collected secondary electron (SE) images and performed image analyses to determine particle centroid locations and the distance to the nearest neighbour particle centroid to arrive at the interparticle distances in acidic and basic conditions. Our results show that delicate changes occur among boehmite particles under different pH conditions using novel in situ SEM imaging.
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Affiliation(s)
- J Yao
- Energy and Environment Directorate, Pacific Northwest National Laboratory, Richland, Washington, U.S.A
| | - A Ossana
- Energy and Environment Directorate, Pacific Northwest National Laboratory, Richland, Washington, U.S.A
| | - J Chun
- Physical and Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, U.S.A
| | - X-Y Yu
- Energy and Environment Directorate, Pacific Northwest National Laboratory, Richland, Washington, U.S.A
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Yu J, Zhou Y, Engelhard M, Zhang Y, Son J, Liu S, Zhu Z, Yu XY. In situ molecular imaging of adsorbed protein films in water indicating hydrophobicity and hydrophilicity. Sci Rep 2020; 10:3695. [PMID: 32111945 PMCID: PMC7048838 DOI: 10.1038/s41598-020-60428-1] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2019] [Accepted: 02/03/2020] [Indexed: 01/21/2023] Open
Abstract
In situ molecular imaging of protein films adsorbed on a solid surface in water was realized by using a vacuum compatible microfluidic interface and time-of-flight secondary ion mass spectrometry (ToF-SIMS). Amino acid fragments from such hydrated protein films are observed and identified in the positive ion mode and the results are in agreement with reported works on dry protein films. Moreover, water clusters from the hydrated protein films have been observed and identified in both the positive and negative ion mode for a series protein films. Thus, the detailed composition of amino acids and water molecules in the hydrated protein films can be characterized, and the protein water microstructures can be revealed by the distinct three-dimensional spatial distribution reconstructed from in situ liquid ToF-SIMS molecular imaging. Furthermore, spectral principal component analysis of amino acid fragment peaks and water cluster peaks provides unique insights into the water cluster distribution, hydrophilicity, and hydrophobicity of hydrated adsorbed protein films in water.
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Affiliation(s)
- Jiachao Yu
- Jiangsu Province Hi-Tech Key Laboratory for Bio-medical Research, School of Chemistry and Chemical Engineering, Southeast University, Nanjing, 210096, China
- Energy and Environment Directorate, Pacific Northwest National Laboratory, Richland, WA, 99354, USA
- Department of Chemistry, School of Science, Zhejiang Sci-Tech University, Hangzhou, 310018, China
| | - Yufan Zhou
- Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, 99354, USA
| | - Mark Engelhard
- Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, 99354, USA
| | - Yuchen Zhang
- Energy and Environment Directorate, Pacific Northwest National Laboratory, Richland, WA, 99354, USA
| | - Jiyoung Son
- Energy and Environment Directorate, Pacific Northwest National Laboratory, Richland, WA, 99354, USA
| | - Songqin Liu
- Jiangsu Province Hi-Tech Key Laboratory for Bio-medical Research, School of Chemistry and Chemical Engineering, Southeast University, Nanjing, 210096, China.
| | - Zihua Zhu
- Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, 99354, USA.
| | - Xiao-Ying Yu
- Energy and Environment Directorate, Pacific Northwest National Laboratory, Richland, WA, 99354, USA.
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5
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Yu X, Arey B, Chatterjee S, Chun J. Improving in situ liquid SEM imaging of particles. SURF INTERFACE ANAL 2019. [DOI: 10.1002/sia.6700] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Xiao‐Ying Yu
- Energy and Environment DirectoratePacific Northwest National Laboratory Richland WA 99354 USA
| | - Bruce Arey
- Energy and Environment DirectoratePacific Northwest National Laboratory Richland WA 99354 USA
| | - Sayandev Chatterjee
- Energy and Environment DirectoratePacific Northwest National Laboratory Richland WA 99354 USA
| | - Jaehun Chun
- Physical and Computational Sciences DirectoratePacific Northwest National Laboratory Richland WA 99354 USA
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Komorek R, Xu B, Yao J, Ablikim U, Troy TP, Kostko O, Ahmed M, Yu XY. Enabling liquid vapor analysis using synchrotron VUV single photon ionization mass spectrometry with a microfluidic interface. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2018; 89:115105. [PMID: 30501361 DOI: 10.1063/1.5048315] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/12/2018] [Accepted: 10/19/2018] [Indexed: 06/09/2023]
Abstract
Vacuum ultraviolet (VUV) single photon ionization mass spectrometry (SPI-MS) is a vacuum-based technique typically used for the analysis of gas phase and solid samples, but not for liquids due to the challenge in introducing volatile liquids in a vacuum. Here we present the first demonstration of in situ liquid analysis by integrating the System for Analysis at the Liquid Vacuum Interface (SALVI) microfluidic reactor into VUV SPI-MS. Four representative volatile organic compound (VOC) solutions were used to illustrate the feasibility of liquid analysis. Our results show the accurate mass identification of the VOC molecules and the reliable determination of appearance energy that is consistent with ionization energy for gaseous species in the literature as reported. This work validates that the vacuum-compatible SALVI microfluidic interface can be utilized at the synchrotron beamline and enable the in situ study of gas-phase molecules evaporating off the surface of a liquid, which holds importance in the study of condensed matter chemistry.
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Affiliation(s)
- R Komorek
- Atmospheric Sciences and Global Change Division, PNNL, Richland, Washington 99354, USA
| | - B Xu
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - J Yao
- Atmospheric Sciences and Global Change Division, PNNL, Richland, Washington 99354, USA
| | - U Ablikim
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - T P Troy
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - O Kostko
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - M Ahmed
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - X Y Yu
- Atmospheric Sciences and Global Change Division, PNNL, Richland, Washington 99354, USA
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7
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Mourdikoudis S, Pallares RM, Thanh NTK. Characterization techniques for nanoparticles: comparison and complementarity upon studying nanoparticle properties. NANOSCALE 2018; 10:12871-12934. [PMID: 29926865 DOI: 10.1039/c8nr02278j] [Citation(s) in RCA: 582] [Impact Index Per Article: 97.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
Nanostructures have attracted huge interest as a rapidly growing class of materials for many applications. Several techniques have been used to characterize the size, crystal structure, elemental composition and a variety of other physical properties of nanoparticles. In several cases, there are physical properties that can be evaluated by more than one technique. Different strengths and limitations of each technique complicate the choice of the most suitable method, while often a combinatorial characterization approach is needed. In addition, given that the significance of nanoparticles in basic research and applications is constantly increasing, it is necessary that researchers from separate fields overcome the challenges in the reproducible and reliable characterization of nanomaterials, after their synthesis and further process (e.g. annealing) stages. The principal objective of this review is to summarize the present knowledge on the use, advances, advantages and weaknesses of a large number of experimental techniques that are available for the characterization of nanoparticles. Different characterization techniques are classified according to the concept/group of the technique used, the information they can provide, or the materials that they are destined for. We describe the main characteristics of the techniques and their operation principles and we give various examples of their use, presenting them in a comparative mode, when possible, in relation to the property studied in each case.
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Affiliation(s)
- Stefanos Mourdikoudis
- Biophysics Group, Department of Physics and Astronomy, University College London, London, WC1E 6BT, UK.
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8
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Yu X, Yu J, Zhou Y, Zhang Y, Wang J, Evans JE, Yu XY, Wang XL, Zhu Z. An investigation of the beam damage effect on in situ liquid secondary ion mass spectrometry analysis. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2017; 31:2035-2042. [PMID: 28884926 DOI: 10.1002/rcm.7983] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/08/2017] [Revised: 09/02/2017] [Accepted: 09/02/2017] [Indexed: 06/07/2023]
Abstract
RATIONALE During in situ liquid secondary ion mass spectrometry (SIMS) analysis, the primary ion beam is normally scanned on a very small area to collect signals with high ion doses (1014 to 1016 ions/cm2 ). As a result, beam damage may become a concern when compared with the static limit of SIMS analysis, in which the dose is normally less than 1012 ions/cm2 . Therefore, a comparison of ion yields in in situ liquid SIMS analysis versus traditional static SIMS analysis of corresponding dry samples is of great interest. METHODS In this study, a dipalmitoylphosphatidylcholine (DPPC) liposome solution was used as a model system. Both liquid sample and dry sample were examined. Secondary ion yields using three primary ion species (Bi+ , Bi3+ and Bi3++ ) with various beam currents were investigated. RESULTS Usable ion yields for both positive and negative characteristic signals (including molecular ions and characteristic fragment ions) were achievable based on optimized experimental conditions for in situ liquid SIMS analysis. The ion yield of the key DPPC molecular ion was comparable to that of traditional static SIMS, and unexpected low fragmentation was observed. The flexible structure of the liquid plays an important role for these observations. CONCLUSIONS Therefore, beam damage may not be a concern in in situ liquid SIMS analysis if proper experimental conditions are used.
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Affiliation(s)
- Xiaofei Yu
- School of Physics, State Key Laboratory of Crystal Materials & Key Laboratory of Particle Physics and Particle Irradiation (MOE), Shandong University, Jinan, 250100, China
- W. R. Wiley Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, 99354, USA
| | - Jiachao Yu
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, 99354, USA
| | - Yufan Zhou
- School of Physics, State Key Laboratory of Crystal Materials & Key Laboratory of Particle Physics and Particle Irradiation (MOE), Shandong University, Jinan, 250100, China
- W. R. Wiley Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, 99354, USA
| | - Yanyan Zhang
- W. R. Wiley Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, 99354, USA
| | - Jungang Wang
- W. R. Wiley Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, 99354, USA
| | - James E Evans
- W. R. Wiley Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, 99354, USA
| | - Xiao-Ying Yu
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, 99354, USA
| | - Xue-Lin Wang
- School of Physics, State Key Laboratory of Crystal Materials & Key Laboratory of Particle Physics and Particle Irradiation (MOE), Shandong University, Jinan, 250100, China
| | - Zihua Zhu
- W. R. Wiley Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, 99354, USA
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9
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Dwyer JR, Harb M. Through a Window, Brightly: A Review of Selected Nanofabricated Thin-Film Platforms for Spectroscopy, Imaging, and Detection. APPLIED SPECTROSCOPY 2017; 71:2051-2075. [PMID: 28714316 DOI: 10.1177/0003702817715496] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
We present a review of the use of selected nanofabricated thin films to deliver a host of capabilities and insights spanning bioanalytical and biophysical chemistry, materials science, and fundamental molecular-level research. We discuss approaches where thin films have been vital, enabling experimental studies using a variety of optical spectroscopies across the visible and infrared spectral range, electron microscopies, and related techniques such as electron energy loss spectroscopy, X-ray photoelectron spectroscopy, and single molecule sensing. We anchor this broad discussion by highlighting two particularly exciting exemplars: a thin-walled nanofluidic sample cell concept that has advanced the discovery horizons of ultrafast spectroscopy and of electron microscopy investigations of in-liquid samples; and a unique class of thin-film-based nanofluidic devices, designed around a nanopore, with expansive prospects for single molecule sensing. Free-standing, low-stress silicon nitride membranes are a canonical structural element for these applications, and we elucidate the fabrication and resulting features-including mechanical stability, optical properties, X-ray and electron scattering properties, and chemical nature-of this material in this format. We also outline design and performance principles and include a discussion of underlying material preparations and properties suitable for understanding the use of alternative thin-film materials such as graphene.
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Affiliation(s)
- Jason R Dwyer
- 1 Department of Chemistry, University of Rhode Island, Kingston, RI, USA
| | - Maher Harb
- 2 Department of Physics and Materials, Science & Engineering, Drexel University, Philadelphia, PA, USA
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10
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Renslow RS, Marshall MJ, Tucker AE, Chrisler WB, Yu XY. In situ nuclear magnetic resonance microimaging of live biofilms in a microchannel. Analyst 2017; 142:2363-2371. [DOI: 10.1039/c7an00078b] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
The firstin situnuclear magnetic resonance microimaging of live biofilms in a transferrable microfluidic platform.
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Affiliation(s)
- R. S. Renslow
- Earth and Biological Sciences Directorate
- Pacific Northwest National Laboratory
- Richland
- USA
| | - M. J. Marshall
- Earth and Biological Sciences Directorate
- Pacific Northwest National Laboratory
- Richland
- USA
| | - A. E. Tucker
- Earth and Biological Sciences Directorate
- Pacific Northwest National Laboratory
- Richland
- USA
| | - W. B. Chrisler
- Earth and Biological Sciences Directorate
- Pacific Northwest National Laboratory
- Richland
- USA
| | - X.-Y. Yu
- Earth and Biological Sciences Directorate
- Pacific Northwest National Laboratory
- Richland
- USA
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11
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Zhou Y, Yao J, Ding Y, Yu J, Hua X, Evans JE, Yu X, Lao DB, Heldebrant DJ, Nune SK, Cao B, Bowden ME, Yu XY, Wang XL, Zhu Z. Improving the Molecular Ion Signal Intensity for In Situ Liquid SIMS Analysis. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2016; 27:2006-2013. [PMID: 27600576 DOI: 10.1007/s13361-016-1478-x] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/17/2016] [Revised: 08/08/2016] [Accepted: 08/10/2016] [Indexed: 06/06/2023]
Abstract
In situ liquid secondary ion mass spectrometry (SIMS) enabled by system for analysis at the liquid vacuum interface (SALVI) has proven to be a promising new tool to provide molecular information at solid-liquid and liquid-vacuum interfaces. However, the initial data showed that useful signals in positive ion spectra are too weak to be meaningful in most cases. In addition, it is difficult to obtain strong negative molecular ion signals when m/z>200. These two drawbacks have been the biggest obstacle towards practical use of this new analytical approach. In this study, we report that strong and reliable positive and negative molecular signals are achievable after optimizing the SIMS experimental conditions. Four model systems, including a 1,8-diazabicycloundec-7-ene (DBU)-base switchable ionic liquid, a live Shewanella oneidensis biofilm, a hydrated mammalian epithelia cell, and an electrolyte popularly used in Li ion batteries were studied. A signal enhancement of about two orders of magnitude was obtained in comparison with non-optimized conditions. Therefore, molecular ion signal intensity has become very acceptable for use of in situ liquid SIMS to study solid-liquid and liquid-vacuum interfaces. Graphical Abstract ᅟ.
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Affiliation(s)
- Yufan Zhou
- School of Physics, State Key Laboratory of Crystal Materials and Key Laboratory of Particle Physics and Particle Irradiation (MOE), Shandong University, Jinan, 250100, China
- W. R. Wiley Environmental Molecular Sciences Laboratory, Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, 99354, USA
| | - Juan Yao
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, 99354, USA
| | - Yuanzhao Ding
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, 99354, USA
- School of Civil and Environmental Engineering and Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore, 639798, Singapore
| | - Jiachao Yu
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, 99354, USA
| | - Xin Hua
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, 99354, USA
| | - James E Evans
- W. R. Wiley Environmental Molecular Sciences Laboratory, Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, 99354, USA
| | - Xiaofei Yu
- School of Physics, State Key Laboratory of Crystal Materials and Key Laboratory of Particle Physics and Particle Irradiation (MOE), Shandong University, Jinan, 250100, China
- W. R. Wiley Environmental Molecular Sciences Laboratory, Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, 99354, USA
| | - David B Lao
- Energy and Environment Directorate, Pacific Northwest National Laboratory, Richland, WA, 99354, USA
| | - David J Heldebrant
- Energy and Environment Directorate, Pacific Northwest National Laboratory, Richland, WA, 99354, USA
| | - Satish K Nune
- Energy and Environment Directorate, Pacific Northwest National Laboratory, Richland, WA, 99354, USA
| | - Bin Cao
- School of Civil and Environmental Engineering and Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore, 639798, Singapore
| | - Mark E Bowden
- W. R. Wiley Environmental Molecular Sciences Laboratory, Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, 99354, USA
| | - Xiao-Ying Yu
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, 99354, USA.
| | - Xue-Lin Wang
- School of Physics, State Key Laboratory of Crystal Materials and Key Laboratory of Particle Physics and Particle Irradiation (MOE), Shandong University, Jinan, 250100, China.
| | - Zihua Zhu
- W. R. Wiley Environmental Molecular Sciences Laboratory, Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, 99354, USA.
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12
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Hua X, Szymanski C, Wang Z, Zhou Y, Ma X, Yu J, Evans J, Orr G, Liu S, Zhu Z, Yu XY. Chemical imaging of molecular changes in a hydrated single cell by dynamic secondary ion mass spectrometry and super-resolution microscopy. Integr Biol (Camb) 2016; 8:635-644. [DOI: 10.1039/c5ib00308c] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/30/2023]
Affiliation(s)
- Xin Hua
- School of Chemistry and Chemical Engineering, Southeast University, Nanjing, Jiangsu Province, 211189, China
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA 99354, USA
| | - Craig Szymanski
- W. R. Wiley Environmental Molecular Science Laboratory, Pacific Northwest National Laboratory, Richland, WA 99352, USA
| | - Zhaoying Wang
- W. R. Wiley Environmental Molecular Science Laboratory, Pacific Northwest National Laboratory, Richland, WA 99352, USA
| | - Yufan Zhou
- W. R. Wiley Environmental Molecular Science Laboratory, Pacific Northwest National Laboratory, Richland, WA 99352, USA
| | - Xiang Ma
- Physical and Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA 99354, USA
| | - Jiachao Yu
- School of Chemistry and Chemical Engineering, Southeast University, Nanjing, Jiangsu Province, 211189, China
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA 99354, USA
| | - James Evans
- W. R. Wiley Environmental Molecular Science Laboratory, Pacific Northwest National Laboratory, Richland, WA 99352, USA
| | - Galya Orr
- W. R. Wiley Environmental Molecular Science Laboratory, Pacific Northwest National Laboratory, Richland, WA 99352, USA
| | - Songqin Liu
- School of Chemistry and Chemical Engineering, Southeast University, Nanjing, Jiangsu Province, 211189, China
| | - Zihua Zhu
- W. R. Wiley Environmental Molecular Science Laboratory, Pacific Northwest National Laboratory, Richland, WA 99352, USA
| | - Xiao-Ying Yu
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA 99354, USA
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13
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Yang W, Zhang Y, Hilke M, Reisner W. Dynamic imaging of Au-nanoparticles via scanning electron microscopy in a graphene wet cell. NANOTECHNOLOGY 2015; 26:315703. [PMID: 26177916 DOI: 10.1088/0957-4484/26/31/315703] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
High resolution nanoscale imaging in liquid environments is crucial for studying molecular interactions in biological and chemical systems. In particular, electron microscopy is the gold-standard tool for nanoscale imaging, but its high-vacuum requirements make application to in-liquid samples extremely challenging. Here we present a new graphene based wet cell device where high resolution scanning electron microscope (SEM) and energy dispersive x-rays (EDX) analysis can be performed directly inside a liquid environment. Graphene is an ideal membrane material as its high transparancy, conductivity and mechanical strength can support the high vacuum and grounding requirements of a SEM while enabling maximal resolution and signal. In particular, we obtain high resolution ([Formula: see text] nm) SEM video images of nanoparticles undergoing Brownian motion inside the graphene wet cell and EDX analysis of nanoparticle composition in the liquid enviornment. Our obtained resolution surpasses current conventional silicon nitride devices imaged in both a SEM and transmission electron microscope under much higher electron doses.
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Affiliation(s)
- Wayne Yang
- Department of Physics and RQMP, McGill University, Montreal, Canada
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14
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Hua X, Marshall MJ, Xiong Y, Ma X, Zhou Y, Tucker AE, Zhu Z, Liu S, Yu XY. Two-dimensional and three-dimensional dynamic imaging of live biofilms in a microchannel by time-of-flight secondary ion mass spectrometry. BIOMICROFLUIDICS 2015; 9:031101. [PMID: 26015837 PMCID: PMC4425724 DOI: 10.1063/1.4919807] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2015] [Accepted: 04/24/2015] [Indexed: 06/04/2023]
Abstract
A vacuum compatible microfluidic reactor, SALVI (System for Analysis at the Liquid Vacuum Interface), was employed for in situ chemical imaging of live biofilms using time-of-flight secondary ion mass spectrometry (ToF-SIMS). Depth profiling by sputtering materials in sequential layers resulted in live biofilm spatial chemical mapping. Two-dimensional (2D) images were reconstructed to report the first three-dimensional images of hydrated biofilm elucidating spatial and chemical heterogeneity. 2D image principal component analysis was conducted among biofilms at different locations in the microchannel. Our approach directly visualized spatial and chemical heterogeneity within the living biofilm by dynamic liquid ToF-SIMS.
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Affiliation(s)
| | - Matthew J Marshall
- Biological Sciences Division, Pacific Northwest National Laboratory , Richland, Washington 99354, USA
| | - Yijia Xiong
- College of Osteopathic Medicine of the Pacific-Northwest, Western University of Health Sciences , Lebanon, Oregon 97355, USA
| | - Xiang Ma
- Material Sciences, Pacific Northwest National Laboratory , Richland, Washington 99354, USA
| | - Yufan Zhou
- W. R. Wiley Environmental Molecular Science Laboratory, Pacific Northwest National Laboratory , Richland, Washington 99354, USA
| | - Abigail E Tucker
- Biological Sciences Division, Pacific Northwest National Laboratory , Richland, Washington 99354, USA
| | - Zihua Zhu
- W. R. Wiley Environmental Molecular Science Laboratory, Pacific Northwest National Laboratory , Richland, Washington 99354, USA
| | - Songqin Liu
- School of Chemistry and Chemical Engineering, Southeast University , Nanjing, Jiangsu Province 211189, People's Republic of China
| | - Xiao-Ying Yu
- Atmospheric Sciences and Global Climate Change Division, Pacific Northwest National Laboratory , Richland, Washington 99354, USA
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15
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Halaszova S, Jerigova M, Lorenc D, Velic D. Preparation of Cyclodextrin-Iron Species in Water by Laser Ablation: Secondary Ion Mass Spectrometry. Chemphyschem 2015; 16:2110-3. [DOI: 10.1002/cphc.201500215] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2015] [Indexed: 11/09/2022]
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16
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Liu B, Yu XY, Zhu Z, Hua X, Yang L, Wang Z. In situ chemical probing of the electrode-electrolyte interface by ToF-SIMS. LAB ON A CHIP 2014; 14:855-859. [PMID: 24356670 DOI: 10.1039/c3lc50971k] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
A portable vacuum interface allowing direct probing of the electrode-electrolyte interface was developed. A classical electrochemical system consisting of a gold working electrode, platinum counter electrode, platinum reference electrode, and potassium iodide electrolyte was used to demonstrate real-time observation of the gold iodide adlayer on the electrode and chemical species as a result of redox reactions using cyclic voltammetry (CV) and time-of-flight secondary ion mass spectrometry (ToF-SIMS, a vacuum-based surface technique) simultaneously. This microfluidic electrochemical probe provides a new way to investigate the surface region with adsorbed molecules and the region of the diffused layer with chemical speciation in liquids in situ by surface sensitive techniques.
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Affiliation(s)
- Bingwen Liu
- Atmospheric Sciences and Global Climate Change Division, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
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17
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Hua X, Yu XY, Wang Z, Yang L, Liu B, Zhu Z, Tucker AE, Chrisler WB, Hill EA, Thevuthasan T, Lin Y, Liu S, Marshall MJ. In situ molecular imaging of a hydrated biofilm in a microfluidic reactor by ToF-SIMS. Analyst 2014; 139:1609-13. [DOI: 10.1039/c3an02262e] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
A novel microfluidic reactor for biofilm growth was constructed to enablein situchemical imaging of hydrated biofilms using ToF-SIMS.
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Affiliation(s)
- Xin Hua
- Fundamental and Computer Sciences
- Pacific Northwest National Laboratory (PNNL)
- Richland, USA
- School of Chemistry and Chemical Engineering
- Southeast University
| | - Xiao-Ying Yu
- Fundamental and Computer Sciences
- Pacific Northwest National Laboratory (PNNL)
- Richland, USA
| | - Zhaoying Wang
- W. R. Wiley Environmental Molecular Science Laboratory
- PNNL
- Richland, USA
| | - Li Yang
- W. R. Wiley Environmental Molecular Science Laboratory
- PNNL
- Richland, USA
| | - Bingwen Liu
- Fundamental and Computer Sciences
- Pacific Northwest National Laboratory (PNNL)
- Richland, USA
| | - Zihua Zhu
- W. R. Wiley Environmental Molecular Science Laboratory
- PNNL
- Richland, USA
| | | | | | | | - Theva Thevuthasan
- W. R. Wiley Environmental Molecular Science Laboratory
- PNNL
- Richland, USA
| | - Yuehe Lin
- Physical Sciences Division
- PNNL
- Richland, USA
- School of Mechanical and Materials Engineering
- Washington State University
| | - Songqin Liu
- School of Chemistry and Chemical Engineering
- Southeast University
- Nanjing, PR China
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