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For: Siksnys V, Skirgaila R, Sasnauskas G, Urbanke C, Cherny D, Grazulis S, Huber R. The Cfr10I restriction enzyme is functional as a tetramer. J Mol Biol 1999;291:1105-18. [PMID: 10518946 DOI: 10.1006/jmbi.1999.2977] [Citation(s) in RCA: 74] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Indexed: 11/22/2022]
Number Cited by Other Article(s)
1
Horton NC, Lyumkis D. Structures, mechanisms, and kinetic advantages of the SgrAI filament forming mechanism. Crit Rev Biochem Mol Biol 2024:1-39. [PMID: 39699272 DOI: 10.1080/10409238.2024.2440315] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Received: 09/27/2024] [Revised: 12/04/2024] [Accepted: 12/06/2024] [Indexed: 12/20/2024]
2
Tamulaitiene G, Manakova E, Jovaisaite V, Tamulaitis G, Grazulis S, Bochtler M, Siksnys V. Unique mechanism of target recognition by PfoI restriction endonuclease of the CCGG-family. Nucleic Acids Res 2019;47:997-1010. [PMID: 30445642 PMCID: PMC6344858 DOI: 10.1093/nar/gky1137] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Academic Contribution Register] [Received: 07/14/2018] [Accepted: 10/26/2018] [Indexed: 01/23/2023]  Open
3
Shen BW, Doyle L, Bradley P, Heiter DF, Lunnen KD, Wilson GG, Stoddard BL. Structure, subunit organization and behavior of the asymmetric Type IIT restriction endonuclease BbvCI. Nucleic Acids Res 2019;47:450-467. [PMID: 30395313 PMCID: PMC6326814 DOI: 10.1093/nar/gky1059] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Academic Contribution Register] [Received: 08/28/2018] [Revised: 10/15/2018] [Accepted: 10/17/2018] [Indexed: 11/17/2022]  Open
4
Tamulaitiene G, Jovaisaite V, Tamulaitis G, Songailiene I, Manakova E, Zaremba M, Grazulis S, Xu SY, Siksnys V. Restriction endonuclease AgeI is a monomer which dimerizes to cleave DNA. Nucleic Acids Res 2017;45:3547-3558. [PMID: 28039325 PMCID: PMC5389614 DOI: 10.1093/nar/gkw1310] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Academic Contribution Register] [Received: 09/22/2016] [Revised: 12/13/2016] [Accepted: 12/19/2016] [Indexed: 01/19/2023]  Open
5
Tamulaitis G, Rutkauskas M, Zaremba M, Grazulis S, Tamulaitiene G, Siksnys V. Functional significance of protein assemblies predicted by the crystal structure of the restriction endonuclease BsaWI. Nucleic Acids Res 2015;43:8100-10. [PMID: 26240380 PMCID: PMC4652773 DOI: 10.1093/nar/gkv768] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Academic Contribution Register] [Received: 06/11/2015] [Accepted: 07/17/2015] [Indexed: 02/03/2023]  Open
6
Single molecular investigation of DNA looping and aggregation by restriction endonuclease BspMI. Sci Rep 2014;4:5897. [PMID: 25077775 PMCID: PMC4116625 DOI: 10.1038/srep05897] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Academic Contribution Register] [Received: 04/28/2014] [Accepted: 07/15/2014] [Indexed: 11/09/2022]  Open
7
Pingoud A, Wilson GG, Wende W. Type II restriction endonucleases--a historical perspective and more. Nucleic Acids Res 2014;42:7489-527. [PMID: 24878924 PMCID: PMC4081073 DOI: 10.1093/nar/gku447] [Citation(s) in RCA: 175] [Impact Index Per Article: 15.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Academic Contribution Register] [Received: 01/07/2014] [Revised: 05/02/2014] [Accepted: 05/07/2014] [Indexed: 12/17/2022]  Open
8
Ma X, Shah S, Zhou M, Park CK, Wysocki VH, Horton NC. Structural analysis of activated SgrAI-DNA oligomers using ion mobility mass spectrometry. Biochemistry 2013;52:4373-81. [PMID: 23742104 DOI: 10.1021/bi3013214] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Indexed: 11/30/2022]
9
Silanskas A, Foss M, Wende W, Urbanke C, Lagunavicius A, Pingoud A, Siksnys V. Photocaged variants of the MunI and PvuII restriction enzymes. Biochemistry 2011;50:2800-7. [PMID: 21410225 DOI: 10.1021/bi2000609] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Indexed: 12/23/2022]
10
Park CK, Joshi HK, Agrawal A, Ghare MI, Little EJ, Dunten PW, Bitinaite J, Horton NC. Domain swapping in allosteric modulation of DNA specificity. PLoS Biol 2010;8:e1000554. [PMID: 21151881 PMCID: PMC2998434 DOI: 10.1371/journal.pbio.1000554] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Academic Contribution Register] [Received: 04/22/2010] [Accepted: 10/27/2010] [Indexed: 11/19/2022]  Open
11
Prymula K, Jadczyk T, Roterman I. Catalytic residues in hydrolases: analysis of methods designed for ligand-binding site prediction. J Comput Aided Mol Des 2010;25:117-33. [PMID: 21104192 PMCID: PMC3032897 DOI: 10.1007/s10822-010-9402-0] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Academic Contribution Register] [Received: 08/05/2010] [Accepted: 11/08/2010] [Indexed: 11/26/2022]
12
Zaremba M, Owsicka A, Tamulaitis G, Sasnauskas G, Shlyakhtenko LS, Lushnikov AY, Lyubchenko YL, Laurens N, van den Broek B, Wuite GJL, Siksnys V. DNA synapsis through transient tetramerization triggers cleavage by Ecl18kI restriction enzyme. Nucleic Acids Res 2010;38:7142-54. [PMID: 20571089 PMCID: PMC2978343 DOI: 10.1093/nar/gkq560] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Academic Contribution Register] [Indexed: 01/29/2023]  Open
13
Khan F, Furuta Y, Kawai M, Kaminska KH, Ishikawa K, Bujnicki JM, Kobayashi I. A putative mobile genetic element carrying a novel type IIF restriction-modification system (PluTI). Nucleic Acids Res 2010;38:3019-30. [PMID: 20071747 PMCID: PMC2875022 DOI: 10.1093/nar/gkp1221] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Academic Contribution Register] [Indexed: 01/24/2023]  Open
14
Laurens N, Bellamy SRW, Harms AF, Kovacheva YS, Halford SE, Wuite GJL. Dissecting protein-induced DNA looping dynamics in real time. Nucleic Acids Res 2009;37:5454-64. [PMID: 19586932 PMCID: PMC2760800 DOI: 10.1093/nar/gkp570] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Academic Contribution Register] [Indexed: 11/14/2022]  Open
15
Ibryashkina EM, Sasnauskas G, Solonin AS, Zakharova MV, Siksnys V. Oligomeric structure diversity within the GIY-YIG nuclease family. J Mol Biol 2009;387:10-6. [PMID: 19361436 DOI: 10.1016/j.jmb.2009.01.048] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Received: 11/10/2008] [Revised: 12/30/2008] [Accepted: 01/23/2009] [Indexed: 10/21/2022]
16
Dunten PW, Little EJ, Gregory MT, Manohar VM, Dalton M, Hough D, Bitinaite J, Horton NC. The structure of SgrAI bound to DNA; recognition of an 8 base pair target. Nucleic Acids Res 2008;36:5405-16. [PMID: 18701646 PMCID: PMC2532715 DOI: 10.1093/nar/gkn510] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Academic Contribution Register] [Received: 07/03/2008] [Revised: 07/19/2008] [Accepted: 07/24/2008] [Indexed: 11/14/2022]  Open
17
Takahashi S, Matsuno H, Furusawa H, Okahata Y. Direct monitoring of allosteric recognition of type IIE restriction endonuclease EcoRII. J Biol Chem 2008;283:15023-30. [PMID: 18367450 PMCID: PMC3258892 DOI: 10.1074/jbc.m800334200] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Received: 01/14/2008] [Revised: 03/13/2008] [Indexed: 11/06/2022]  Open
18
Nakonieczna J, Zmijewski JW, Banecki B, Podhajska AJ. Binding of MmeI restriction-modification enzyme to its specific recognition sequence is stimulated by S-adenosyl-L-methionine. Mol Biotechnol 2008;37:127-35. [PMID: 17914173 DOI: 10.1007/s12033-007-0034-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Received: 11/30/1999] [Revised: 11/30/1999] [Accepted: 11/30/1999] [Indexed: 11/29/2022]
19
Gasiunas G, Sasnauskas G, Tamulaitis G, Urbanke C, Razaniene D, Siksnys V. Tetrameric restriction enzymes: expansion to the GIY-YIG nuclease family. Nucleic Acids Res 2007;36:938-49. [PMID: 18086711 PMCID: PMC2241918 DOI: 10.1093/nar/gkm1090] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Academic Contribution Register] [Indexed: 11/13/2022]  Open
20
Kwiatek A, Piekarowicz A. The restriction endonuclease R.NmeDI from Neisseria meningitidis that recognizes a palindromic sequence and cuts the DNA on both sides of the recognition sequence. Nucleic Acids Res 2007;35:6539-46. [PMID: 17897964 PMCID: PMC2095814 DOI: 10.1093/nar/gkm702] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Academic Contribution Register] [Indexed: 12/01/2022]  Open
21
Bellamy SRW, Milsom SE, Kovacheva YS, Sessions RB, Halford SE. A switch in the mechanism of communication between the two DNA-binding sites in the SfiI restriction endonuclease. J Mol Biol 2007;373:1169-83. [PMID: 17870087 PMCID: PMC2082129 DOI: 10.1016/j.jmb.2007.08.030] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Academic Contribution Register] [Received: 07/12/2007] [Revised: 08/10/2007] [Accepted: 08/14/2007] [Indexed: 11/29/2022]
22
Sokolowska M, Kaus-Drobek M, Czapinska H, Tamulaitis G, Szczepanowski RH, Urbanke C, Siksnys V, Bochtler M. Monomeric restriction endonuclease BcnI in the apo form and in an asymmetric complex with target DNA. J Mol Biol 2007;369:722-34. [PMID: 17445830 DOI: 10.1016/j.jmb.2007.03.018] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Received: 01/15/2007] [Revised: 03/01/2007] [Accepted: 03/06/2007] [Indexed: 11/20/2022]
23
Kaus-Drobek M, Czapinska H, Sokołowska M, Tamulaitis G, Szczepanowski RH, Urbanke C, Siksnys V, Bochtler M. Restriction endonuclease MvaI is a monomer that recognizes its target sequence asymmetrically. Nucleic Acids Res 2007;35:2035-46. [PMID: 17344322 PMCID: PMC1874612 DOI: 10.1093/nar/gkm064] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Academic Contribution Register] [Indexed: 11/12/2022]  Open
24
Okorokov AL, Sherman MB, Plisson C, Grinkevich V, Sigmundsson K, Selivanova G, Milner J, Orlova EV. The structure of p53 tumour suppressor protein reveals the basis for its functional plasticity. EMBO J 2006;25:5191-200. [PMID: 17053786 PMCID: PMC1630404 DOI: 10.1038/sj.emboj.7601382] [Citation(s) in RCA: 96] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Received: 04/10/2006] [Accepted: 09/13/2006] [Indexed: 01/11/2023]  Open
25
Tamulaitiene G, Jakubauskas A, Urbanke C, Huber R, Grazulis S, Siksnys V. The crystal structure of the rare-cutting restriction enzyme SdaI reveals unexpected domain architecture. Structure 2006;14:1389-400. [PMID: 16962970 DOI: 10.1016/j.str.2006.07.002] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Received: 04/24/2006] [Revised: 07/04/2006] [Accepted: 07/05/2006] [Indexed: 01/31/2023]
26
Zaremba M, Sasnauskas G, Urbanke C, Siksnys V. Allosteric communication network in the tetrameric restriction endonuclease Bse634I. J Mol Biol 2006;363:800-12. [PMID: 16987525 DOI: 10.1016/j.jmb.2006.08.050] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Received: 07/03/2006] [Revised: 08/03/2006] [Accepted: 08/17/2006] [Indexed: 11/20/2022]
27
Gemmen GJ, Millin R, Smith DE. Tension-dependent DNA cleavage by restriction endonucleases: two-site enzymes are "switched off" at low force. Proc Natl Acad Sci U S A 2006;103:11555-60. [PMID: 16868081 PMCID: PMC1520314 DOI: 10.1073/pnas.0604463103] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Indexed: 11/18/2022]  Open
28
Gemmen GJ, Millin R, Smith DE. DNA looping by two-site restriction endonucleases: heterogeneous probability distributions for loop size and unbinding force. Nucleic Acids Res 2006;34:2864-77. [PMID: 16723432 PMCID: PMC1474071 DOI: 10.1093/nar/gkl382] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Academic Contribution Register] [Indexed: 11/12/2022]  Open
29
Lushnikov AY, Potaman VN, Oussatcheva EA, Sinden RR, Lyubchenko YL. DNA strand arrangement within the SfiI-DNA complex: atomic force microscopy analysis. Biochemistry 2006;45:152-8. [PMID: 16388590 PMCID: PMC1352315 DOI: 10.1021/bi051767c] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Indexed: 11/28/2022]
30
Catto LE, Ganguly S, Milsom SE, Welsh AJ, Halford SE. Protein assembly and DNA looping by the FokI restriction endonuclease. Nucleic Acids Res 2006;34:1711-20. [PMID: 16556912 PMCID: PMC1410913 DOI: 10.1093/nar/gkl076] [Citation(s) in RCA: 37] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Download PDF] [Figures] [Journal Information] [Subscribe] [Academic Contribution Register] [Indexed: 11/14/2022]  Open
31
Tamulaitis G, Sasnauskas G, Mucke M, Siksnys V. Simultaneous binding of three recognition sites is necessary for a concerted plasmid DNA cleavage by EcoRII restriction endonuclease. J Mol Biol 2006;358:406-19. [PMID: 16529772 DOI: 10.1016/j.jmb.2006.02.024] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Received: 10/29/2005] [Revised: 02/08/2006] [Accepted: 02/09/2006] [Indexed: 11/28/2022]
32
Tamulaitis G, Mucke M, Siksnys V. Biochemical and mutational analysis ofEcoRII functional domains reveals evolutionary links between restriction enzymes. FEBS Lett 2006;580:1665-71. [PMID: 16497303 DOI: 10.1016/j.febslet.2006.02.010] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Received: 12/12/2005] [Revised: 01/16/2006] [Accepted: 02/07/2006] [Indexed: 11/23/2022]
33
van den Broek B, Vanzi F, Normanno D, Pavone FS, Wuite GJ. Real-time observation of DNA looping dynamics of Type IIE restriction enzymes NaeI and NarI. Nucleic Acids Res 2006;34:167-74. [PMID: 16407332 PMCID: PMC1326248 DOI: 10.1093/nar/gkj432] [Citation(s) in RCA: 45] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Academic Contribution Register] [Indexed: 11/13/2022]  Open
34
Wood KM, Daniels LE, Halford SE. Long-range communications between DNA sites by the dimeric restriction endonuclease SgrAI. J Mol Biol 2005;350:240-53. [PMID: 15923010 DOI: 10.1016/j.jmb.2005.04.053] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Received: 03/09/2005] [Revised: 04/21/2005] [Accepted: 04/25/2005] [Indexed: 10/25/2022]
35
Yang Z, Horton JR, Maunus R, Wilson GG, Roberts RJ, Cheng X. Structure of HinP1I endonuclease reveals a striking similarity to the monomeric restriction enzyme MspI. Nucleic Acids Res 2005;33:1892-901. [PMID: 15805123 PMCID: PMC1074309 DOI: 10.1093/nar/gki337] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Academic Contribution Register] [Indexed: 11/13/2022]  Open
36
Zaremba M, Sasnauskas G, Urbanke C, Siksnys V. Conversion of the Tetrameric Restriction Endonuclease Bse634I into a Dimer: Oligomeric Structure–Stability–Function Correlations. J Mol Biol 2005;348:459-78. [PMID: 15811381 DOI: 10.1016/j.jmb.2005.02.037] [Citation(s) in RCA: 36] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Received: 12/15/2004] [Revised: 02/02/2005] [Accepted: 02/20/2005] [Indexed: 11/30/2022]
37
Chmiel AA, Bujnicki JM, Skowronek KJ. A homology model of restriction endonuclease SfiI in complex with DNA. BMC STRUCTURAL BIOLOGY 2005;5:2. [PMID: 15667656 PMCID: PMC548270 DOI: 10.1186/1472-6807-5-2] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Academic Contribution Register] [Received: 10/08/2004] [Accepted: 01/24/2005] [Indexed: 11/10/2022]
38
Xu QS, Kucera RB, Roberts RJ, Guo HC. An Asymmetric Complex of Restriction Endonuclease MspI on Its Palindromic DNA Recognition Site. Structure 2004;12:1741-7. [PMID: 15341737 DOI: 10.1016/j.str.2004.07.014] [Citation(s) in RCA: 37] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Received: 05/10/2004] [Revised: 06/28/2004] [Accepted: 07/06/2004] [Indexed: 11/30/2022]
39
Peakman LJ, Szczelkun MD. DNA communications by Type III restriction endonucleases--confirmation of 1D translocation over 3D looping. Nucleic Acids Res 2004;32:4166-74. [PMID: 15302916 PMCID: PMC514383 DOI: 10.1093/nar/gkh762] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Indexed: 11/15/2022]  Open
40
Halford SE, Welsh AJ, Szczelkun MD. Enzyme-mediated DNA looping. ACTA ACUST UNITED AC 2004;33:1-24. [PMID: 15139802 DOI: 10.1146/annurev.biophys.33.110502.132711] [Citation(s) in RCA: 96] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Indexed: 11/09/2022]
41
Gowers DM, Bellamy SRW, Halford SE. One recognition sequence, seven restriction enzymes, five reaction mechanisms. Nucleic Acids Res 2004;32:3469-79. [PMID: 15226412 PMCID: PMC443551 DOI: 10.1093/nar/gkh685] [Citation(s) in RCA: 37] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Indexed: 11/13/2022]  Open
42
Embleton ML, Vologodskii AV, Halford SE. Dynamics of DNA loop capture by the SfiI restriction endonuclease on supercoiled and relaxed DNA. J Mol Biol 2004;339:53-66. [PMID: 15123420 DOI: 10.1016/j.jmb.2004.03.046] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Received: 01/05/2004] [Revised: 03/11/2004] [Accepted: 03/18/2004] [Indexed: 11/18/2022]
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Zaremba M, Urbanke C, Halford SE, Siksnys V. Generation of the BfiI restriction endonuclease from the fusion of a DNA recognition domain to a non-specific nuclease from the phospholipase D superfamily. J Mol Biol 2004;336:81-92. [PMID: 14741205 DOI: 10.1016/j.jmb.2003.12.012] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Indexed: 10/26/2022]
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Zhou XE, Wang Y, Reuter M, Mücke M, Krüger DH, Meehan EJ, Chen L. Crystal Structure of Type IIE Restriction Endonuclease EcoRII Reveals an Autoinhibition Mechanism by a Novel Effector-binding Fold. J Mol Biol 2004;335:307-19. [PMID: 14659759 DOI: 10.1016/j.jmb.2003.10.030] [Citation(s) in RCA: 55] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Indexed: 11/29/2022]
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Structure and Function of the Tetrameric Restriction Enzymes. RESTRICTION ENDONUCLEASES 2004. [DOI: 10.1007/978-3-642-18851-0_9] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Academic Contribution Register] [Indexed: 01/07/2023]
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Mucke M, Kruger DH, Reuter M. Diversity of type II restriction endonucleases that require two DNA recognition sites. Nucleic Acids Res 2003;31:6079-84. [PMID: 14576294 PMCID: PMC275478 DOI: 10.1093/nar/gkg836] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Indexed: 11/12/2022]  Open
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Hingorani-Varma K, Bitinaite J. Kinetic analysis of the coordinated interaction of SgrAI restriction endonuclease with different DNA targets. J Biol Chem 2003;278:40392-9. [PMID: 12851384 DOI: 10.1074/jbc.m304603200] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Indexed: 11/06/2022]  Open
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Pingoud V, Conzelmann C, Kinzebach S, Sudina A, Metelev V, Kubareva E, Bujnicki JM, Lurz R, Lüder G, Xu SY, Pingoud A. PspGI, a type II restriction endonuclease from the extreme thermophile Pyrococcus sp.: structural and functional studies to investigate an evolutionary relationship with several mesophilic restriction enzymes. J Mol Biol 2003;329:913-29. [PMID: 12798682 DOI: 10.1016/s0022-2836(03)00523-0] [Citation(s) in RCA: 45] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Indexed: 11/17/2022]
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Katiliene Z, Katilius E, Woodbury NW. Single molecule detection of DNA looping by NgoMIV restriction endonuclease. Biophys J 2003;84:4053-61. [PMID: 12770909 PMCID: PMC1302985 DOI: 10.1016/s0006-3495(03)75131-5] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Indexed: 10/21/2022]  Open
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Daniels LE, Wood KM, Scott DJ, Halford SE. Subunit assembly for DNA cleavage by restriction endonuclease SgrAI. J Mol Biol 2003;327:579-91. [PMID: 12634054 DOI: 10.1016/s0022-2836(03)00143-8] [Citation(s) in RCA: 38] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Indexed: 10/27/2022]
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