1
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Zhang K, Wang W, Yang Q. Transcriptome Analysis Reveals the Regulation of Aureobasidium pullulans under Different pH Stress. Int J Mol Sci 2023; 24:16103. [PMID: 38003294 PMCID: PMC10671783 DOI: 10.3390/ijms242216103] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2023] [Revised: 11/01/2023] [Accepted: 11/03/2023] [Indexed: 11/26/2023] Open
Abstract
Aureobasidium pullulans (A. pullulans), a commonly found yeast-like fungus, exhibits adaptability to a wide range of pH environments. However, the specific mechanisms and regulatory pathways through which A. pullulans respond to external pH remain to be fully understood. In this study, we first sequenced the whole genome of A. pullulans using Nanopore technology and generated a circle map. Subsequently, we explored the biomass, pullulan production, melanin production, and polymalic acid production of A. pullulans when cultivated at different pH levels. We selected pH 4.0, pH 7.0, and pH 10.0 to represent acidic, neutral, and alkaline environments, respectively, and examined the morphological characteristics of A. pullulans using SEM and TEM. Our observations revealed that A. pullulans predominantly exhibited hyphal growth with thicker cell walls under acidic conditions. In neutral environments, it primarily displayed thick-walled spores and yeast-like cells, while in alkaline conditions, it mainly assumed an elongated yeast-like cell morphology. Additionally, transcriptome analysis unveiled that A. pullulans orchestrates its response to shifts in environmental pH by modulating its cellular morphology and the expression of genes involved in pullulan, melanin, and polymalic acid synthesis. This research enhances the understanding of how A. pullulans regulates itself in diverse pH settings and offers valuable guidance for developing and applying engineered strains.
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Affiliation(s)
- Kai Zhang
- School of Life Science and Technology, Harbin Institute of Technology, Harbin 150006, China
| | - Wan Wang
- School of Life Science and Technology, Harbin Institute of Technology, Harbin 150006, China
| | - Qian Yang
- School of Life Science and Technology, Harbin Institute of Technology, Harbin 150006, China
- State Key Laboratory of Urban Water Resources and Environment, Harbin Institute of Technology, Harbin 150090, China
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2
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Jiang Y, Jenjob R, Yang SG. Enhanced Therapeutic Potential of Irreversible Electroporation under Combination with Gold-Doped Mesoporous Silica Nanoparticles against EMT-6 Breast Cancer Cells. BIOSENSORS 2022; 13:41. [PMID: 36671876 PMCID: PMC9855861 DOI: 10.3390/bios13010041] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/07/2022] [Revised: 12/07/2022] [Accepted: 12/23/2022] [Indexed: 06/17/2023]
Abstract
Irreversible electroporation (IRE) is a non-thermal tumor ablation technique that delivers short pulses of strong electric fields to cancer tissues and induces cell death through the destruction of cell membranes. Here, we synthesized gold-doped mesoporous silica nanoparticles (Au-MSNs) via incipient wetness impregnation and evaluated the therapeutic potentials of combination therapy with IRE. The fabricated Au-MSNs had around 80-100 nm of particle size and were successfully end-doped with Au nanoparticles. Combination treatment of IRE (800 V/cm) and Au-MSNs (100 μg/mL) increased cell membrane permeability by 25-fold compared with single IRE treatment. Cellular reactive oxygen species (ROS) and lipid peroxidation of EMT-6 cells were significantly increased by 14- and 265-fold, respectively, under combination treatment of IRE (800 V/cm) and Au-MSNs (100 µg/mL). Cytotoxic cell death increased by 28% under a combination treatment of IRE (800 V/cm) and Au-MSNs (100 ug/mL) over single IRE. Our studies suggest that the combination treatment of IRE with Au-MSNs can enhance the therapeutic efficacy of IRE for breast cancer.
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Affiliation(s)
| | | | - Su-Geun Yang
- Correspondence: ; Tel.: +82-32-890-2832; Fax: +82-32-890-1199
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3
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Tian L, Wu M, Li H, Gong G. Transcriptome Analysis of
Micrococcus luteus
in Response to Treatment with Protocatechuic acid. J Appl Microbiol 2022; 133:3139-3149. [DOI: 10.1111/jam.15743] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2022] [Revised: 07/15/2022] [Accepted: 07/19/2022] [Indexed: 11/28/2022]
Affiliation(s)
- Lu Tian
- School of Food and Biological Engineering Shaanxi University of Science and Technology Xi'an shaanxi China
| | - Mi Wu
- School of Food and Biological Engineering Shaanxi University of Science and Technology Xi'an shaanxi China
| | - Hui Li
- School of Food and Biological Engineering Shaanxi University of Science and Technology Xi'an shaanxi China
| | - Guoli Gong
- School of Food and Biological Engineering Shaanxi University of Science and Technology Xi'an shaanxi China
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4
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Study of tribological properties of human buccal epithelium cell membranes using probe microscopy. Sci Rep 2022; 12:11302. [PMID: 35787653 PMCID: PMC9252996 DOI: 10.1038/s41598-022-14807-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2022] [Accepted: 06/13/2022] [Indexed: 11/22/2022] Open
Abstract
In this work demostrates a unique method for determining the absolute value of the friction force of a nanoobject on the surface of a cell membrane using atomic force microscopy. The tribological properties of membranes of adult human buccal epithelium cells in the presence of a protective adsorption buffer layer of ~ 100 nm on their surface were studied using atomic force microscopy in the contact scanning mode. Local mapping of the tribological characteristics of the surface was carried out, viz. friction FL = FL(x, y) and adhesion Fadh = Fadh(x, y) forces were measured. Studies of the friction force Ffr on the membrane surface at the nanolevel showed that its value varies discretely with an interval equal to lLF ≈ 100 nm. It was shown that such discreteness is determined by the interval lLF of the action of adhesive forces Fadh and indicates the fractal nature of the functional dependence of the friction force on the coordinate Ffr = Ffr(x). Thus, for nano-objects with dimensions ≤ lLF, the absolute value of Ffr decreases according to a power law with an increase in the size of the object, which contradicts the similar dependence of the friction force for macro-objects in the global approximation.
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5
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Ruzgys P, Barauskaitė N, Novickij V, Novickij J, Šatkauskas S. The Evidence of the Bystander Effect after Bleomycin Electrotransfer and Irreversible Electroporation. Molecules 2021; 26:molecules26196001. [PMID: 34641546 PMCID: PMC8512684 DOI: 10.3390/molecules26196001] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2021] [Revised: 09/16/2021] [Accepted: 09/24/2021] [Indexed: 12/03/2022] Open
Abstract
One of current applications of electroporation is electrochemotherapy and electroablation for local cancer treatment. Both of these electroporation modalities share some similarities with radiation therapy, one of which could be the bystander effect. In this study, we aimed to investigate the role of the bystander effect following these electroporation-based treatments. During direct CHO-K1 cell treatment, cells were electroporated using one 100 µs duration square wave electric pulse at 1400 V/cm (for bleomycin electrotransfer) or 2800 V/cm (for irreversible electroporation). To evaluate the bystander effect, the medium was taken from directly treated cells after 24 h incubation and applied on unaffected cells. Six days after the treatment, cell viability and colony sizes were evaluated using the cell colony formation assay. The results showed that the bystander effect after bleomycin electrotransfer had a strong negative impact on cell viability and cell colony size, which decreased to 2.8% and 23.1%, respectively. On the contrary, irreversible electroporation induced a strong positive bystander effect on cell viability, which increased to 149.3%. In conclusion, the results presented may serve as a platform for further analysis of the bystander effect after electroporation-based therapies and may ultimately lead to refined application of these therapies in clinics.
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Affiliation(s)
- Paulius Ruzgys
- Biophysical Research Group, Vytautas Magnus University, Vileikos st. 844404, LT-44001 Kaunas, Lithuania; (P.R.); (N.B.)
| | - Neringa Barauskaitė
- Biophysical Research Group, Vytautas Magnus University, Vileikos st. 844404, LT-44001 Kaunas, Lithuania; (P.R.); (N.B.)
| | - Vitalij Novickij
- Institute of High Magnetic Fields, Vilnius Gediminas Technical University, Naugarduko st. 4103227, LT-10224 Vilnius, Lithuania; (V.N.); (J.N.)
| | - Jurij Novickij
- Institute of High Magnetic Fields, Vilnius Gediminas Technical University, Naugarduko st. 4103227, LT-10224 Vilnius, Lithuania; (V.N.); (J.N.)
| | - Saulius Šatkauskas
- Biophysical Research Group, Vytautas Magnus University, Vileikos st. 844404, LT-44001 Kaunas, Lithuania; (P.R.); (N.B.)
- Correspondence:
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6
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Cifra M, Apollonio F, Liberti M, García-Sánchez T, Mir LM. Possible molecular and cellular mechanisms at the basis of atmospheric electromagnetic field bioeffects. INTERNATIONAL JOURNAL OF BIOMETEOROLOGY 2021; 65:59-67. [PMID: 32335726 PMCID: PMC7782448 DOI: 10.1007/s00484-020-01885-1] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/15/2019] [Revised: 02/07/2020] [Accepted: 02/19/2020] [Indexed: 05/05/2023]
Abstract
Mechanisms of how electromagnetic (EM) field acts on biological systems are governed by the same physics regardless of the origin of the EM field (technological, atmospheric...), given that EM parameters are the same. We draw from a large body of literature of bioeffects of a man-made electromagnetic field. In this paper, we performed a focused review on selected possible mechanisms of how atmospheric electromagnetic phenomena can act at the molecular and cellular level. We first briefly review the range of frequencies and field strengths for both electric and magnetic fields in the atmosphere. Then, we focused on a concise description of the current knowledge on weak electric and magnetic field bioeffects with possible molecular mechanisms at the basis of possible EM field bioeffects combined with modeling strategies to estimate reliable outcomes and speculate about the biological effects linked to lightning or pyroelectricity. Indeed, we bring pyroelectricity as a natural source of voltage gradients previously unexplored. While very different from lightning, it can result in similar bioeffects based on similar mechanisms, which can lead to close speculations on the importance of these atmospheric electric fields in the evolution.
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Affiliation(s)
- Michal Cifra
- Institute of Photonics and Electronics of the Czech Academy of Sciences, 18251, Chaberská 1014/57, Prague, Czechia.
| | - Francesca Apollonio
- Department of Information Engineering, Electronics and Telecommunications, Sapienza University of Rome, Rome, Italy
| | - Micaela Liberti
- Department of Information Engineering, Electronics and Telecommunications, Sapienza University of Rome, Rome, Italy
| | - Tomás García-Sánchez
- Department of Information and Communication Technologies, Universitat Pompeu Fabra, Barcelona, Spain
| | - Lluis M Mir
- Université Paris-Saclay, CNRS, Gustave Roussy, Aspects métaboliques et systémiques de l'oncogénèse pour de nouvelles approches thérapeutiques, 94805, Villejuif, France
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7
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Hunting ER, Matthews J, de Arróyabe Hernáez PF, England SJ, Kourtidis K, Koh K, Nicoll K, Harrison RG, Manser K, Price C, Dragovic S, Cifra M, Odzimek A, Robert D. Challenges in coupling atmospheric electricity with biological systems. INTERNATIONAL JOURNAL OF BIOMETEOROLOGY 2021; 65:45-58. [PMID: 32666310 PMCID: PMC7782408 DOI: 10.1007/s00484-020-01960-7] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/13/2019] [Revised: 05/29/2020] [Accepted: 06/26/2020] [Indexed: 05/24/2023]
Abstract
The atmosphere is host to a complex electric environment, ranging from a global electric circuit generating fluctuating atmospheric electric fields to local lightning strikes and ions. While research on interactions of organisms with their electrical environment is deeply rooted in the aquatic environment, it has hitherto been confined to interactions with local electrical phenomena and organismal perception of electric fields. However, there is emerging evidence of coupling between large- and small-scale atmospheric electrical phenomena and various biological processes in terrestrial environments that even appear to be tied to continental waters. Here, we synthesize our current understanding of this connectivity, discussing how atmospheric electricity can affect various levels of biological organization across multiple ecosystems. We identify opportunities for research, highlighting its complexity and interdisciplinary nature and draw attention to both conceptual and technical challenges lying ahead of our future understanding of the relationship between atmospheric electricity and the organization and functioning of biological systems.
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Affiliation(s)
- Ellard R Hunting
- School of Biological Sciences, University of Bristol, Bristol, UK.
| | | | | | - Sam J England
- School of Biological Sciences, University of Bristol, Bristol, UK
| | - Konstantinos Kourtidis
- Department of Environmental Engineering, Demokritus University of Thrace, Xanthi, Greece
- ISLP Xanthi Branch, ENTA Unit, ATHENA Research and Innovation Center, Xanthi, Greece
| | - Kuang Koh
- School of Biological Sciences, University of Bristol, Bristol, UK
| | - Keri Nicoll
- Department of Electronic and Electrical Engineering, University of Bath, Bath, UK
- Department of Meteorology, University of Reading, Reading, UK
| | | | | | - Colin Price
- Department of Geophysics. Porter School of the Environment and Earth Sciences, Tel Aviv University, Tel Aviv, Israel
| | - Snezana Dragovic
- Vinča Institute of Nuclear Sciences, University of Belgrade, Belgrade, Serbia
| | - Michal Cifra
- Institute of Photonics and Electronics, Czech Academy of Sciences, Prague, Czechia
| | - Anna Odzimek
- Institute of Geophysics, Polish Academy of Sciences, Warsaw, Poland
| | - Daniel Robert
- School of Biological Sciences, University of Bristol, Bristol, UK.
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8
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Ghorbel A, André FM, Mir LM, García-Sánchez T. Electrophoresis-assisted accumulation of conductive nanoparticles for the enhancement of cell electropermeabilization. Bioelectrochemistry 2020; 137:107642. [PMID: 32980738 DOI: 10.1016/j.bioelechem.2020.107642] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2020] [Revised: 08/20/2020] [Accepted: 08/20/2020] [Indexed: 12/22/2022]
Abstract
The use of conductive nanoparticles (NPs) was previously proposed as a way to locally amplify the electric field (EF) intensity at the cell membrane to enhance cell electroporation. To achieve this, a close distance between the NPs and the cell membrane is mandatory. Here, a new method to improve the contact between NPs and cell surface using the effects of electric pulses (electrophoretic forces) is explored. The effects of two types of electric pulses are analyzed alone or combined in a two-pulse-train protocol on Chinese hamster DC-3F cells. Particularly we used 100 µs duration pulses, low intensity-millisecond pulses and combinations of both. Finally, we studied the use of surface coated NPs (PEGylated) for this application. Our results demonstrate that the delivery of an electric field prior to the electroporation pulses increases the accumulation of NPs around the cell membrane suggesting that NPs are pushed towards the cell surface through electrophoretic forces. This allowed reducing the need for long incubations between cells and NPs to observe an enhancement of electroporation mediated by conductive NPs. Thus low intensity-millisecond pulses can be used to increase the accumulation of either aggregated or individual (i.e. PEGylated) NPs supporting the electrophoretic nature of the observed effects.
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Affiliation(s)
- Amina Ghorbel
- Université Paris-Saclay, CNRS, Institut Gustave Roussy, Metabolic and systemic aspects of oncogenesis (METSY), 94805 Villejuif, France
| | - Franck M André
- Université Paris-Saclay, CNRS, Institut Gustave Roussy, Metabolic and systemic aspects of oncogenesis (METSY), 94805 Villejuif, France
| | - Lluis M Mir
- Université Paris-Saclay, CNRS, Institut Gustave Roussy, Metabolic and systemic aspects of oncogenesis (METSY), 94805 Villejuif, France.
| | - Tomás García-Sánchez
- Université Paris-Saclay, CNRS, Institut Gustave Roussy, Metabolic and systemic aspects of oncogenesis (METSY), 94805 Villejuif, France; Department of Information and Communication Technologies, Universitat Pompeu Fabra, Roc Boronat, 138, 08018 Barcelona, Spain.
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9
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Ghorbel A, Mir LM, García-Sánchez T. Conductive nanoparticles improve cell electropermeabilization. NANOTECHNOLOGY 2019; 30:495101. [PMID: 31422958 DOI: 10.1088/1361-6528/ab3be9] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Conducive nanoparticles (NPs) were proposed to locally amplify the external electric field (EF) intensity at the cell surface to improve cell electroporation. To better understand the physical mechanisms behind this improvement, different types of NPs and several incubation conditions were applied to adherent cells in the present study. The enhancement of electroporation was observed in the presence of conductive NPs but not when non-conductive NPs were used. Experimental data demonstrate the influence of the incubation conditions between cells and NPs, which impact on the number and quality (aggregated or isolated) of the NPs surrounding the cells. While NPs can increase the number of electroporated cells, they have a more pronounced impact on the level permeabilization of each individual cell. Our results reveal the potential of conductive NPs to enhance the efficiency of electroporation via the amplification of the local EF at the cell surface as shown by numerical simulations.
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Affiliation(s)
- Amina Ghorbel
- Vectorology and Anticancer Therapies, UMR 8203, CNRS, Univ. Paris-Sud, Gustave Roussy, Université, Paris-Saclay, F-94805 Villejuif, France
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10
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Wende K, von Woedtke T, Weltmann KD, Bekeschus S. Chemistry and biochemistry of cold physical plasma derived reactive species in liquids. Biol Chem 2019; 400:19-38. [PMID: 30403650 DOI: 10.1515/hsz-2018-0242] [Citation(s) in RCA: 60] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2018] [Accepted: 10/29/2018] [Indexed: 02/01/2023]
Abstract
Reactive oxygen and nitrogen species deposited by cold physical plasma are proposed as predominant effectors in the interaction between discharge and biomedical application. Most reactive species found in plasma sources are known in biology for inter- and intracellular communication (redox signaling) and mammalian cells are equipped to interpret the plasma derived redox signal. As such, considerable effort has been put into the investigation of potential clinical applications and the underlying mechanism, with a special emphasis on conditions orchestrated significantly via redox signaling. Among these, immune system control in wound healing and cancer control stands out with promising in vitro and in vivo effects. From the fundamental point of view, further insight in the interaction of the plasma-derived species with biological systems is desired to (a) optimize treatment conditions, (b) identify new fields of application, (c) to improve plasma source design, and (d) to identify the trajectories of reactive species. Knowledge on the biochemical reactivity of non-thermal plasmas is compiled and discussed. While there is considerable knowledge on proteins, lipids and carbohydrates have not received the attention deserved. Nucleic acids have been profoundly investigated yet focusing on molecule functionality rather than chemistry. The data collected underline the efforts taken to understand the fundamentals of plasma medicine but also indicate 'no man's lands' waiting to be discovered.
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Affiliation(s)
- Kristian Wende
- ZIK Plasmatis, Leibniz-Institute for Plasma Science and Technology, Felix-Hausdorff-Str. 2, D-17489 Greifswald, Germany.,Leibniz-Institute for Plasma Science and Technology, Felix-Hausdorff-Str. 2, D-17489 Greifswald, Germany
| | - Thomas von Woedtke
- Leibniz-Institute for Plasma Science and Technology, Felix-Hausdorff-Str. 2, D-17489 Greifswald, Germany.,Greifswald University Medicine, Fleischmannstr. 8, D-17475 Greifswald, Germany
| | - Klaus-Dieter Weltmann
- Leibniz-Institute for Plasma Science and Technology, Felix-Hausdorff-Str. 2, D-17489 Greifswald, Germany
| | - Sander Bekeschus
- ZIK Plasmatis, Leibniz-Institute for Plasma Science and Technology, Felix-Hausdorff-Str. 2, D-17489 Greifswald, Germany.,Leibniz-Institute for Plasma Science and Technology, Felix-Hausdorff-Str. 2, D-17489 Greifswald, Germany
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11
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Mukherjee P, Nathamgari SSP, Kessler JA, Espinosa HD. Combined Numerical and Experimental Investigation of Localized Electroporation-Based Cell Transfection and Sampling. ACS NANO 2018; 12:12118-12128. [PMID: 30452236 PMCID: PMC6535396 DOI: 10.1021/acsnano.8b05473] [Citation(s) in RCA: 75] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/14/2023]
Abstract
Localized electroporation has evolved as an effective technology for the delivery of foreign molecules into cells while preserving their viability. Consequently, this technique has potential applications in sampling the contents of live cells and the temporal assessment of cellular states at the single-cell level. Although there have been numerous experimental reports on localized electroporation-based delivery, a lack of a mechanistic understanding of the process hinders its implementation in sampling. In this work, we develop a multiphysics model that predicts the transport of molecules into and out of the cell during localized electroporation. Based on the model predictions, we optimize experimental parameters such as buffer conditions, electric field strength, cell confluency, and density of nanochannels in the substrate for successful delivery and sampling via localized electroporation. We also identify that cell membrane tension plays a crucial role in enhancing both the amount and the uniformity of molecular transport, particularly for macromolecules. We qualitatively validate the model predictions on a localized electroporation platform by delivering large molecules (bovine serum albumin and mCherry-encoding plasmid) and by sampling an exogeneous protein (tdTomato) in an engineered cell line.
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Affiliation(s)
- Prithvijit Mukherjee
- Department of Mechanical Engineering, Northwestern University, Evanston, Illinois 60208, United States
- Theoretical and Applied Mechanics Program, Northwestern University, Evanston, Illinois 60208, United States
| | - S. Shiva P. Nathamgari
- Department of Mechanical Engineering, Northwestern University, Evanston, Illinois 60208, United States
- Theoretical and Applied Mechanics Program, Northwestern University, Evanston, Illinois 60208, United States
| | - John A. Kessler
- Department of Neurology, Northwestern University, Chicago, Illinois 60611, United States
| | - Horacio D. Espinosa
- Department of Mechanical Engineering, Northwestern University, Evanston, Illinois 60208, United States
- Theoretical and Applied Mechanics Program, Northwestern University, Evanston, Illinois 60208, United States
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12
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In vitro analysis of various cell lines responses to electroporative electric pulses by means of electrical impedance spectroscopy. Biosens Bioelectron 2018; 117:207-216. [DOI: 10.1016/j.bios.2018.06.016] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2018] [Revised: 06/05/2018] [Accepted: 06/06/2018] [Indexed: 11/17/2022]
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