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Rey Redondo E, Xu Y, Yung CCM. Genomic characterisation and ecological distribution of Mantoniella tinhauana: a novel Mamiellophycean green alga from the Western Pacific. Front Microbiol 2024; 15:1358574. [PMID: 38774501 PMCID: PMC11106453 DOI: 10.3389/fmicb.2024.1358574] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2023] [Accepted: 04/12/2024] [Indexed: 05/24/2024] Open
Abstract
Mamiellophyceae are dominant marine algae in much of the ocean, the most prevalent genera belonging to the order Mamiellales: Micromonas, Ostreococcus and Bathycoccus, whose genetics and global distributions have been extensively studied. Conversely, the genus Mantoniella, despite its potential ecological importance, remains relatively under-characterised. In this study, we isolated and characterised a novel species of Mamiellophyceae, Mantoniella tinhauana, from subtropical coastal waters in the South China Sea. Morphologically, it resembles other Mantoniella species; however, a comparative analysis of the 18S and ITS2 marker genes revealed its genetic distinctiveness. Furthermore, we sequenced and assembled the first genome of Mantoniella tinhauana, uncovering significant differences from previously studied Mamiellophyceae species. Notably, the genome lacked any detectable outlier chromosomes and exhibited numerous unique orthogroups. We explored gene groups associated with meiosis, scale and flagella formation, shedding light on species divergence, yet further investigation is warranted. To elucidate the biogeography of Mantoniella tinhauana, we conducted a comprehensive analysis using global metagenomic read mapping to the newly sequenced genome. Our findings indicate this species exhibits a cosmopolitan distribution with a low-level prevalence worldwide. Understanding the intricate dynamics between Mamiellophyceae and the environment is crucial for comprehending their impact on the ocean ecosystem and accurately predicting their response to forthcoming environmental changes.
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Affiliation(s)
| | | | - Charmaine Cheuk Man Yung
- Department of Ocean Science, The Hong Kong University of Science and Technology, Kowloon, Hong Kong SAR, China
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Gebara RC, Abreu CBD, Rocha GS, Mansano ADS, Assis M, Moreira AJ, Santos MA, Pereira TM, Virtuoso LS, Melão MDGG, Longo E. Effects of ZnWO 4 nanoparticles on growth, photosynthesis, and biochemical parameters of the green microalga Raphidocelis subcapitata. CHEMOSPHERE 2024; 353:141590. [PMID: 38460844 DOI: 10.1016/j.chemosphere.2024.141590] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2023] [Revised: 02/08/2024] [Accepted: 02/29/2024] [Indexed: 03/11/2024]
Abstract
Nanoparticles have applications in many sectors in the society. ZnWO4 nanoparticles (ZnWO4-NPs) have potential in the fabrication of sensors, lasers, and batteries, and in environmental remediation. Thus, these NPs may reach aquatic ecosystems. However, we still do not know their effects on aquatic biota and, to our knowledge, this is the first study that evaluates the toxicity of ZnWO4-NPs in a eukaryotic organism. We evaluated the toxicity of ZnWO4-NPs on the green microalga Raphidocelis subcapitata for 96 h, in terms of growth, cell parameters, photosynthesis, and biochemical analysis. Results show that most of Zn was presented in its particulate form, with low amounts of Zn2+, resulting in toxicity at higher levels. The growth was affected from 8.4 mg L-1, with 96h-IC50 of 23.34 mg L-1. The chlorophyll a (Chl a) content increased at 30.2 mg L-1, while the fluorescence of Chl a (FL3-H) decreased at 15.2 mg L-1. We observed increased ROS levels at 44.4 mg L-1. Regarding photosynthesis, the NPs affected the oxygen evolving complex (OEC) and the efficiency of the photosystem II at 22.9 mg L-1. At 44.4 mg L-1 the qP decreased, indicating closure of reaction centers, probably affecting carbon assimilation, which explains the decay of carbohydrates. There was a decrease of qN (non-regulated energy dissipation, not used in photosynthesis), NPQ (regulated energy dissipation) and Y(NPQ) (regulated energy dissipation via heat), indicating damage to the photoprotection system; and an increase in Y(NO), which is the non-regulated energy dissipation via heat and fluorescence. The results showed that ZnWO4-NPs can affect the growth and physiological and biochemical parameters of the chlorophycean R. subcapitata. Microalgae are the base of aquatic food chains, the toxicity of emerging contaminants on microalgae can affect entire ecosystems. Therefore, our study can provide some help for better protection of aquatic ecosystems.
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Affiliation(s)
- Renan Castelhano Gebara
- Center for the Development of Functional Materials (CDMF), Universidade Federal de São Carlos (UFSCar), Rodovia Washington Luís, Km 235, 13565-905, São Carlos, SP, Brazil.
| | - Cínthia Bruno de Abreu
- Center for the Development of Functional Materials (CDMF), Universidade Federal de São Carlos (UFSCar), Rodovia Washington Luís, Km 235, 13565-905, São Carlos, SP, Brazil
| | - Giseli Swerts Rocha
- Universitat Rovira i Virgili, Escola Tècnica Superior d'Enginyeria Química, Departament d'Enginyeria Química, Av. Països Catalans, 26, 43007, Tarragona, Spain
| | - Adrislaine da Silva Mansano
- Department of Hydrobiology (DHb), Universidade Federal de São Carlos (UFSCar), Rodovia Washington Luís, Km 235, 13565-905, São Carlos, SP, Brazil
| | - Marcelo Assis
- Department of Analytical and Physical Chemistry, University Jaume I (UJI), Castelló, Spain
| | - Ailton José Moreira
- São Paulo State University (UNESP), Institute of Chemistry, 14800-060, Araraquara, SP, Brazil
| | | | - Thalles Maranesi Pereira
- Chemistry Institute, Universidade Federal de Alfenas (UNIFAL-MG), Gabriel Monteiro da Silva, 700, Centro, 37130-000, Alfenas, MG, Brazil
| | - Luciano Sindra Virtuoso
- Chemistry Institute, Universidade Federal de Alfenas (UNIFAL-MG), Gabriel Monteiro da Silva, 700, Centro, 37130-000, Alfenas, MG, Brazil
| | - Maria da Graça Gama Melão
- Department of Hydrobiology (DHb), Universidade Federal de São Carlos (UFSCar), Rodovia Washington Luís, Km 235, 13565-905, São Carlos, SP, Brazil
| | - Elson Longo
- Center for the Development of Functional Materials (CDMF), Universidade Federal de São Carlos (UFSCar), Rodovia Washington Luís, Km 235, 13565-905, São Carlos, SP, Brazil
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3
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Zhang W, Shi Y, He L, Chen X, Hu F, Chen Y, Pang Y, Li S, Chu Y. Decreased Salinity Offsets the Stimulation of Elevated pCO 2 on Photosynthesis and Synergistically Inhibits the Growth of Juvenile Sporophyte of Saccharina japonica (Laminariaceae, Phaeophyta). PLANTS (BASEL, SWITZERLAND) 2022; 11:2978. [PMID: 36365430 PMCID: PMC9656199 DOI: 10.3390/plants11212978] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/02/2022] [Revised: 10/30/2022] [Accepted: 11/02/2022] [Indexed: 06/16/2023]
Abstract
The combined effect of elevated pCO2 (Partial Pressure of Carbon Dioxide) and decreased salinity, which is mainly caused by freshwater input, on the growth and physiological traits of algae has been poorly assessed. In order to investigate their individual and interactive effects on the development of commercially farmed algae, the juvenile sporophytes of Saccharina japonica were cultivated under different levels of salinity (30, 25 and 20 psu) and pCO2 (400 and 1000 µatm). Individually, decreased salinity significantly reduced the growth rate and pigments of S. japonica, indicating that the alga was low-salinity stressed. The maximum quantum yield, Fv/Fm, declined at low salinities independent of pCO2, suggesting that the hyposalinity showed the main effect. Unexpectedly, the higher pCO2 enhanced the maximum relative electron transport rate (rETRmax) but decreased the growth rate, pigments and soluble carbohydrates contents. This implies a decoupling between the photosynthesis and growth of this alga, which may be linked to an energetic reallocation among the different metabolic processes. Interactively and previously untested, the decreased salinity offset the improvement of rETRmax and aggravated the declines of growth rate and pigment content caused by the elevated pCO2. These behaviors could be associated with the additionally decreased pH that was induced by the low salinity. Our data, therefore, unveils that the decreased salinity may increase the risks of future CO2-induced ocean acidification on the production of S. japonica.
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Affiliation(s)
- Wenze Zhang
- College of Marine Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, China
- Department of Aquaculture and Aquatic Sciences, Kunsan National University, Gunsan 54150, Korea
| | - Yunyun Shi
- Department of Aquaculture and Aquatic Sciences, Kunsan National University, Gunsan 54150, Korea
- Key Laboratory of Marine Biotechnology of Fujian Province, Institute of Oceanology, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Lianghua He
- Department of Aquaculture and Aquatic Sciences, Kunsan National University, Gunsan 54150, Korea
- Key Laboratory of Marine Biotechnology of Fujian Province, Institute of Oceanology, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Xinhua Chen
- Department of Aquaculture and Aquatic Sciences, Kunsan National University, Gunsan 54150, Korea
- Key Laboratory of Marine Biotechnology of Fujian Province, Institute of Oceanology, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Fengxiao Hu
- Department of Aquaculture and Aquatic Sciences, Kunsan National University, Gunsan 54150, Korea
- Key Laboratory of Marine Biotechnology of Fujian Province, Institute of Oceanology, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Yinrong Chen
- Department of Aquaculture and Aquatic Sciences, Kunsan National University, Gunsan 54150, Korea
- Key Laboratory of Marine Biotechnology of Fujian Province, Institute of Oceanology, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Yun Pang
- Department of Aquaculture and Aquatic Sciences, Kunsan National University, Gunsan 54150, Korea
- Key Laboratory of Marine Biotechnology of Fujian Province, Institute of Oceanology, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Sufang Li
- Laboratoire Génie des Procédés et Matériaux (LGPM), CentraleSupélec, Université Paris-Saclay, 91190 Gif-sur-Yvette, France
| | - Yaoyao Chu
- Department of Aquaculture and Aquatic Sciences, Kunsan National University, Gunsan 54150, Korea
- Key Laboratory of Marine Biotechnology of Fujian Province, Institute of Oceanology, Fujian Agriculture and Forestry University, Fuzhou 350002, China
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Sachu M, Kynshi BL, Syiem MB. A biochemical, physiological and molecular evaluation of how the herbicide 2, 4-dichlorophenoxyacetic acid intercedes photosynthesis and diazotrophy in the cyanobacterium Nostoc muscorum Meg 1. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2022; 29:36684-36698. [PMID: 35064489 DOI: 10.1007/s11356-021-18000-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/09/2021] [Accepted: 12/03/2021] [Indexed: 06/14/2023]
Abstract
Among the non-target microorganisms residing in crop fields that are potentially vulnerable to herbicides are cyanobacteria. They contribute to the maintenance of soil quality and fertility and hence are considered to be an important component of soil microflora. Consequently, the present study was aimed to check the influence of the herbicide 2,4-dichlorophenoxyacetic acid (2,4-D) on some major parameters of carbon (CO2) and nitrogen (N2) fixations of a cyanobacterium Nostoc muscorum Meg 1 isolated from a rice field in Cherrapunji, Meghalaya, India. These include various photosynthetic pigments, the oxygen-evolving complex activity of the PSII, the protein contents of RuBisCO, D1 protein, isocitrate dehydrogenase (IDH), nitrogenase and glutamine synthetase (GS) enzymes, the heterocyst percentage, nitrogenase and GS enzyme activities, and production of total proteins and carbohydrates in the cyanobacterium in a varying range of 50 to 125 ppm doses of 2,4-D. The mRNA levels of several proteins were also analyzed. Besides carotenoid concentration that enhanced at 50 ppm, all other parameters were compromised by 2,4-D in a dose-dependent manner resulting in a reduction in photosynthetic and N2-fixing activities. The negative effect on N2-fixation was partly due to compromised IDH activity. RT-PCR analysis further showed that these negative effects were initiated at transcription levels as mRNA contents of all enzymes studied were found compromised under 2,4-D exposure. The scanning and transmission electron microscopy further revealed herbicide induced adverse changes in the morphology and ultrastructure of the organism. The significance of the work lies in its detailed analysis of the effect of 2,4-D at biochemical, physiological, and molecular levels.
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Affiliation(s)
- Meguovilie Sachu
- Department of Biochemistry, North-Eastern Hill University, Shillong - 793022, Meghalaya, India
| | | | - Mayashree B Syiem
- Department of Biochemistry, North-Eastern Hill University, Shillong - 793022, Meghalaya, India.
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5
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Ahmad A, W Hassan S, Banat F. An overview of microalgae biomass as a sustainable aquaculture feed ingredient: food security and circular economy. Bioengineered 2022; 13:9521-9547. [PMID: 35387561 PMCID: PMC9161971 DOI: 10.1080/21655979.2022.2061148] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022] Open
Abstract
Sustainable management of natural resources is critical to food security. The shrimp feed and fishery sector is expanding rapidly, necessitating the development of alternative sustainable components. Several factors necessitate the exploration of a new source of environmentally friendly and nutrient-rich fish feed ingredients. Microalgal biomass has the potential to support the growth of fish and shrimp aquaculture for global food security in the bio-economy. Algal biorefineries must valorize the whole crop to develop a viable microalgae-based economy. Microalgae have the potential to replace fish meal and fish oil in aquaculture and ensure sustainability standards. Microalgae biomasses provide essential amino acids, valuable triglycerides such as lipids, vitamins, and pigments, making them suitable as nutritional supplements in livestock feed formulations. Fish and microalgae have similar nutritional profiles, and digestibility is a critical aspect of the aquafeed formulation. A highly digestible feed reduces production costs, feed waste, and the risk of eutrophication. Due to low input costs, low carbon footprint, wastewater treatment benefits, and carbon credits from industrial CO2 conversion, microalgae-based fish and shrimp feeds have the potential to provide significant economic benefits. However, several challenges must be addressed before microalgal biomass and bioproducts may be used as fish feeds, including heavy metal bioaccumulation, poor algal biomass digestion, and antinutrient effects. Knowledge of biochemical composition is limited and diverse, and information on nutritional value is scattered or contradictory. This review article presents alternative approaches that could be used in aquaculture to make microalgal biomass a viable alternative to fish meal.
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Affiliation(s)
- Ashfaq Ahmad
- Department of Chemical Engineering, Khalifa University of Science and Technology, Abu Dhabi, United Arab Emirates
| | - Shadi W Hassan
- Department of Chemical Engineering, Khalifa University of Science and Technology, Abu Dhabi, United Arab Emirates
| | - Fawzi Banat
- Department of Chemical Engineering, Khalifa University of Science and Technology, Abu Dhabi, United Arab Emirates
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6
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Qui-Minet ZN, Davoult D, Grall J, Delaunay C, Six C, Cariou T, Martin S. Physiology of maerl algae: Comparison of inter- and intraspecies variations. JOURNAL OF PHYCOLOGY 2021; 57:831-848. [PMID: 33316844 DOI: 10.1111/jpy.13119] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2020] [Revised: 10/09/2020] [Accepted: 11/08/2020] [Indexed: 06/12/2023]
Abstract
Free-living red coralline algae play an important role in the carbon and carbonate cycles of coastal environments. In this study, we examined the physiology of free-living coralline algae-forming maerl beds in the Bay of Brest (Brittany, France), where Lithothamnion corallioides is the dominant maerl (i.e., rhodolith) species. Phymatolithon calcareum and Lithophyllum incrustans are also present (in lower abundances) at a specific site in the bay. We aimed to assess how maerl physiology is affected by seasonality and/or local environmental variations at the inter- and intraspecific levels. Physiological measurements (respiration, photosynthetic, and calcification rates) were performed using incubation chambers in winter and summer to compare (1) the dominant maerl species at three sites and (2) three coexisting maerl species at one site. Comparison of the three coexisting maerl species suggests that L. corallioides is the best adapted to the current environmental conditions in the Bay of Brest, because this species is the most robust to dissolution in the dark in winter and has the highest calcification efficiency in the light. Comparisons of L. corallioides metabolic rates between stations showed that morphological variations within this species are the main factor affecting its photosynthetic and calcification rates. Environmental factors such as freshwater inputs also affect its calcification rates in the dark. In addition to interspecies variation in maerl physiology, there were intraspecific variations associated with direct (water physico-chemistry) or indirect (morphology) local environmental conditions. This study demonstrates the plasticity of maerl physiology in response to environmental changes, which is fundamental for maerl persistence.
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Affiliation(s)
- Zujaila Nohemy Qui-Minet
- CNRS, UMR 7144 Adaptation et Diversité en Milieu Marin, Station Biologique de Roscoff, Sorbonne Université, Place Georges Teissier, 29688, Roscoff Cedex, France
| | - Dominique Davoult
- CNRS, UMR 7144 Adaptation et Diversité en Milieu Marin, Station Biologique de Roscoff, Sorbonne Université, Place Georges Teissier, 29688, Roscoff Cedex, France
| | - Jacques Grall
- IUEM, Université de Bretagne Occidentale, Place Nicolas Copernic, 29280, Plouzané, France
| | - Coralie Delaunay
- CNRS, UMR 7144 Adaptation et Diversité en Milieu Marin, Station Biologique de Roscoff, Sorbonne Université, Place Georges Teissier, 29688, Roscoff Cedex, France
| | - Christophe Six
- CNRS, UMR 7144 Adaptation et Diversité en Milieu Marin, Station Biologique de Roscoff, Sorbonne Université, Place Georges Teissier, 29688, Roscoff Cedex, France
| | - Thierry Cariou
- CNRS, Fédération de Recherche FR2424, Station Biologique de Roscoff, Sorbonne Université, Place Georges Teissier, 29680, Roscoff, France
| | - Sophie Martin
- CNRS, UMR 7144 Adaptation et Diversité en Milieu Marin, Station Biologique de Roscoff, Sorbonne Université, Place Georges Teissier, 29688, Roscoff Cedex, France
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Vishnivetskaya TA, Almatari AL, Spirina EV, Wu X, Williams DE, Pfiffner SM, Rivkina EM. Insights into community of photosynthetic microorganisms from permafrost. FEMS Microbiol Ecol 2021; 96:5979775. [PMID: 33181853 DOI: 10.1093/femsec/fiaa229] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2020] [Accepted: 11/10/2020] [Indexed: 02/07/2023] Open
Abstract
This work integrates cultivation studies of Siberian permafrost and analyses of metagenomes from different locations in the Arctic with the aim of obtaining insights into the community of photosynthetic microorganisms in perennially frozen deposits. Cyanobacteria and microalgae have been described in Arctic aquatic and surface soil environments, but their diversity and ability to withstand harsh conditions within the permafrost are still largely unknown. Community structure of photosynthetic organisms in permafrost sediments was explored using Arctic metagenomes available through the MG-RAST. Sequences affiliated with cyanobacteria represented from 0.25 to 3.03% of total sequences, followed by sequences affiliated with Streptophyta (algae and vascular plants) 0.01-0.45% and Chlorophyta (green algae) 0.01-0.1%. Enrichment and cultivation approaches revealed that cyanobacteria and green algae survive in permafrost and they could be revived during prolonged incubation at low light intensity. Among photosynthetic microorganisms isolated from permafrost, the filamentous Oscillatoria-like cyanobacteria and unicellular green algae of the genus Chlorella were dominant. Our findings suggest that permafrost cyanobacteria and green algae are expected to be effective members of the re-assembled community after permafrost thawing and soil collapse.
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Affiliation(s)
- Tatiana A Vishnivetskaya
- Center for Environmental Biotechnology, University of Tennessee, 676 Dabney Hall, 1416 Circle Drive, Knoxville, TN 37996-1605, USA.,Soil Cryology Laboratory, Institute of Physicochemical and Biological Problems in Soil Science, Institutskaya Street, Bldg. 2, Pushchino, Russia
| | - Abraham L Almatari
- Center for Environmental Biotechnology, University of Tennessee, 676 Dabney Hall, 1416 Circle Drive, Knoxville, TN 37996-1605, USA
| | - Elena V Spirina
- Soil Cryology Laboratory, Institute of Physicochemical and Biological Problems in Soil Science, Institutskaya Street, Bldg. 2, Pushchino, Russia
| | - Xiaofen Wu
- Center for Environmental Biotechnology, University of Tennessee, 676 Dabney Hall, 1416 Circle Drive, Knoxville, TN 37996-1605, USA
| | - Daniel E Williams
- Center for Environmental Biotechnology, University of Tennessee, 676 Dabney Hall, 1416 Circle Drive, Knoxville, TN 37996-1605, USA
| | - Susan M Pfiffner
- Center for Environmental Biotechnology, University of Tennessee, 676 Dabney Hall, 1416 Circle Drive, Knoxville, TN 37996-1605, USA
| | - Elizaveta M Rivkina
- Soil Cryology Laboratory, Institute of Physicochemical and Biological Problems in Soil Science, Institutskaya Street, Bldg. 2, Pushchino, Russia
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Mausz MA, Segovia M, Larsen A, Berger SA, Egge JK, Pohnert G. High CO 2 concentration and iron availability determine the metabolic inventory in an Emiliania huxleyi-dominated phytoplankton community. Environ Microbiol 2020; 22:3863-3882. [PMID: 32656913 DOI: 10.1111/1462-2920.15160] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2020] [Accepted: 07/08/2020] [Indexed: 11/27/2022]
Abstract
Ocean acidification (OA), a consequence of anthropogenic carbon dioxide (CO2 ) emissions, strongly impacts marine ecosystems. OA also influences iron (Fe) solubility, affecting biogeochemical and ecological processes. We investigated the interactive effects of CO2 and Fe availability on the metabolome response of a natural phytoplankton community. Using mesocosms we exposed phytoplankton to ambient (390 μatm) or future CO2 levels predicted for the year 2100 (900 μatm), combined with ambient (4.5 nM) or high (12 nM) dissolved iron (dFe). By integrating over the whole phytoplankton community, we assigned functional changes based on altered metabolite concentrations. Our study revealed the complexity of phytoplankton metabolism. Metabolic profiles showed three stages in response to treatments and phytoplankton dynamics. Metabolome changes were related to the plankton group contributing respective metabolites, explaining bloom decline and community succession. CO2 and Fe affected metabolic profiles. Most saccharides, fatty acids, amino acids and many sterols significantly correlated with the high dFe treatment at ambient pCO2 . High CO2 lowered the abundance of many metabolites irrespective of Fe. However, sugar alcohols accumulated, indicating potential stress. We demonstrate that not only altered species composition but also changes in the metabolic landscape affecting the plankton community may change as a consequence of future high-CO2 oceans.
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Affiliation(s)
- Michaela A Mausz
- Department for Bioorganic Analytics, Friedrich Schiller University Jena, Lessingstr. 8, Jena, 07743, Germany.,Leibniz Institute for Natural Product Research and Infection Biology, Hans Knöll Institute (HKI), Beutenbergstr. 11a, Jena, 07745, Germany.,School of Life Sciences, The University of Warwick, Gibbet Hill Campus, Coventry, CV4 7AL, United Kingdom
| | - María Segovia
- Department of Ecology, Faculty of Sciences, University of Málaga, Bulevar Louis Pasteur s/n, Málaga, 29071, Spain
| | - Aud Larsen
- NORCE Norwegian Research Centre AS, Nygårdsgaten 112, Bergen, 5038, Norway.,Department of Biology, University of Bergen, Thormøhlensgaten 53A/B, Bergen, 5020, Norway
| | - Stella A Berger
- Department of Biology, University of Bergen, Thormøhlensgaten 53A/B, Bergen, 5020, Norway.,Department of Experimental Limnology, Leibniz-Institute of Freshwater Ecology and Inland Fisheries (IGB), Alte Fischerhütte 2, Stechlin, 16775, Germany
| | - Jorun K Egge
- Department of Biology, University of Bergen, Thormøhlensgaten 53A/B, Bergen, 5020, Norway
| | - Georg Pohnert
- Department for Bioorganic Analytics, Friedrich Schiller University Jena, Lessingstr. 8, Jena, 07743, Germany
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Zavřel T, Očenášová P, Sinetova MA, Červený J. Determination of Storage (Starch/Glycogen) and Total Saccharides Content in Algae and Cyanobacteria by a Phenol-Sulfuric Acid Method. Bio Protoc 2018; 8:e2966. [PMID: 34395769 DOI: 10.21769/bioprotoc.2966] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2018] [Revised: 07/25/2018] [Accepted: 07/28/2018] [Indexed: 12/17/2022] Open
Abstract
This is a protocol for quantitative determination of storage and total carbohydrates in algae and cyanobacteria. The protocol is simple, fast and sensitive and it requires only few standard chemicals. Great advantage of this protocol is that both storage and total saccharides can be determined in the cellular pellets that were already used for chlorophyll and carotenoids quantification. Since it is recommended to perform the pigments measurement in triplicates, each pigment analysis can generate samples for both total saccharide and glycogen/starch content quantification. The protocol was applied for quantification of both storage and total carbohydrates in cyanobacteria Synechocystis sp. PCC 6803, Cyanothece sp. ATCC 51142 and Cyanobacterium sp. IPPAS B-1200. It was also applied for estimation of storage polysaccharides in Galdieria (IPPAS P-500, IPPAS P-507, IPPAS P-508, IPPAS P-513), Cyanidium caldarium IPPAS P-510, in green algae Chlorella sp. IPPAS C-1 and C-1210, Parachlorella kessleri IPPAS C-9, Nannochloris sp. C-1509, Coelastrella sp. IPPAS H-626, Haematococcus sp. IPPAS H-629 and H-239, and in Eustigmatos sp. IPPAS H-242 and IPPAS C-70.
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Affiliation(s)
- Tomáš Zavřel
- Department of Adaptive Biotechnologies, Global Change Research Institute, Academy of Science of the Czech Republic, Brno, Czech Republic
| | - Petra Očenášová
- Department of Adaptive Biotechnologies, Global Change Research Institute, Academy of Science of the Czech Republic, Brno, Czech Republic
| | - Maria A Sinetova
- Laboratory of Intracellular Regulation, Institute of Plant Physiology, Russian Academy of Sciences, Moscow, Russia
| | - Jan Červený
- Department of Adaptive Biotechnologies, Global Change Research Institute, Academy of Science of the Czech Republic, Brno, Czech Republic
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10
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Adey WH, Laughinghouse HD, Miller JB, Hayek LAC, Thompson JG, Bertman S, Hampel K, Puvanendran S. Algal turf scrubber (ATS) floways on the Great Wicomico River, Chesapeake Bay: productivity, algal community structure, substrate and chemistry(1). JOURNAL OF PHYCOLOGY 2013; 49:489-501. [PMID: 27007038 DOI: 10.1111/jpy.12056] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/28/2012] [Accepted: 12/13/2012] [Indexed: 05/20/2023]
Abstract
Two Algal Turf Scrubber (ATS) units were deployed on the Great Wicomico River (GWR) for 22 months to examine the role of substrate in increasing algal productivity and nutrient removal. The yearly mean productivity of flat ATS screens was 15.4 g · m(-2) · d(-1) . This was elevated to 39.6 g · m(-2) · d(-1) with a three-dimensional (3-D) screen, and to 47.7 g · m(-2) · d(-1) by avoiding high summer harvest temperatures. These methods enhanced nutrient removal (N, P) in algal biomass by 3.5 times. Eighty-six algal taxa (Ochrophyta [diatoms], Chlorophyta [green algae], and Cyan-obacteria [blue-green algae]) self-seeded from the GWR and demonstrated yearly cycling. Silica (SiO2 ) content of the algal biomass ranged from 30% to 50% of total biomass; phosphorus, nitrogen, and carbon content of the total algal biomass ranged from 0.15% to 0.21%, 2.13% to 2.89%, and 20.0% to 25.7%, respectively. Carbohydrate content (at 10%-25% of AFDM) was dominated by glucose. Lipids (fatty acid methyl ester; FAMEs) ranged widely from 0.5% to 9% AFDM, with Omega-3 fatty acids a consistent component. Mathematical modeling of algal produ-ctivity as a function of temperature, light, and substrate showed a proportionality of 4:3:3, resp-ectively. Under landscape ATS operation, substrate manipulation provides a considerable opportunity to increase ATS productivity, water quality amelioration, and biomass coproduction for fertilizers, fermentation energy, and omega-3 products. Based on the 3-D prod-uctivity and algal chemical composition demonstrated, ATS systems used for nonpoint source water treat-ment can produce ethanol (butanol) at 5.8× per unit area of corn, and biodiesel at 12.0× per unit area of soy beans (agricultural production US).
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Affiliation(s)
- Walter H Adey
- Department of Botany, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20013, USA
| | - H Dail Laughinghouse
- Department of Botany, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20013, USA
| | - John B Miller
- Chemistry Department - MS5413, Western Michigan University, Kalamazoo, Michigan, 49008, USA
| | - Lee-Ann C Hayek
- Statistics and Mathematics, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, USA
| | - Jesse G Thompson
- Chemistry Department - MS5413, Western Michigan University, Kalamazoo, Michigan, 49008, USA
| | - Steven Bertman
- Chemistry Department - MS5413, Western Michigan University, Kalamazoo, Michigan, 49008, USA
| | - Kristin Hampel
- Chemistry Department - MS5413, Western Michigan University, Kalamazoo, Michigan, 49008, USA
| | - Shanmugam Puvanendran
- Chemistry Department - MS5413, Western Michigan University, Kalamazoo, Michigan, 49008, USA
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García-Camacho F, Sánchez-Mirón A, Molina-Grima E, Camacho-Rubio F, Merchuck J. A mechanistic model of photosynthesis in microalgae including photoacclimation dynamics. J Theor Biol 2012; 304:1-15. [DOI: 10.1016/j.jtbi.2012.03.021] [Citation(s) in RCA: 78] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2011] [Revised: 03/08/2012] [Accepted: 03/12/2012] [Indexed: 11/26/2022]
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Wan L, Han J, Sang M, Li A, Wu H, Yin S, Zhang C. De novo transcriptomic analysis of an oleaginous microalga: pathway description and gene discovery for production of next-generation biofuels. PLoS One 2012; 7:e35142. [PMID: 22536352 PMCID: PMC3335056 DOI: 10.1371/journal.pone.0035142] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2012] [Accepted: 03/08/2012] [Indexed: 11/29/2022] Open
Abstract
Background Eustigmatos cf. polyphem is a yellow-green unicellular soil microalga belonging to the eustimatophyte with high biomass and considerable production of triacylglycerols (TAGs) for biofuels, which is thus referred to as an oleaginous microalga. The paucity of microalgae genome sequences, however, limits development of gene-based biofuel feedstock optimization studies. Here we describe the sequencing and de novo transcriptome assembly for a non-model microalgae species, E. cf. polyphem, and identify pathways and genes of importance related to biofuel production. Results We performed the de novo assembly of E. cf. polyphem transcriptome using Illumina paired-end sequencing technology. In a single run, we produced 29,199,432 sequencing reads corresponding to 2.33 Gb total nucleotides. These reads were assembled into 75,632 unigenes with a mean size of 503 bp and an N50 of 663 bp, ranging from 100 bp to >3,000 bp. Assembled unigenes were subjected to BLAST similarity searches and annotated with Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) orthology identifiers. These analyses identified the majority of carbohydrate, fatty acids, TAG and carotenoids biosynthesis and catabolism pathways in E. cf. polyphem. Conclusions Our data provides the construction of metabolic pathways involved in the biosynthesis and catabolism of carbohydrate, fatty acids, TAG and carotenoids in E. cf. polyphem and provides a foundation for the molecular genetics and functional genomics required to direct metabolic engineering efforts that seek to enhance the quantity and character of microalgae-based biofuel feedstock.
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Affiliation(s)
- LingLin Wan
- Institute of Hydrobiology, Jinan University, Guangzhou, People's Republic of China
| | - Juan Han
- Institute of Hydrobiology, Jinan University, Guangzhou, People's Republic of China
| | - Min Sang
- Institute of Hydrobiology, Jinan University, Guangzhou, People's Republic of China
| | - AiFen Li
- Institute of Hydrobiology, Jinan University, Guangzhou, People's Republic of China
| | - Hong Wu
- State Key Laboratory of Coal-Based Low Carbon Energy, Xinao Scientific & Technological Developmental Co. Ltd., Langfang, People's Republic of China
| | - ShunJi Yin
- State Key Laboratory of Coal-Based Low Carbon Energy, Xinao Scientific & Technological Developmental Co. Ltd., Langfang, People's Republic of China
| | - ChengWu Zhang
- Institute of Hydrobiology, Jinan University, Guangzhou, People's Republic of China
- * E-mail:
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