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Ponce-Vargas M, Azarias C, Jacquemin D, Le Guennic B. Combined TD-DFT-SOS-CIS(D) Study of BOPHY Derivatives with Potential Application in Biosensing. J Phys Chem B 2017; 121:10850-10858. [DOI: 10.1021/acs.jpcb.7b09698] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Miguel Ponce-Vargas
- Laboratoire Modélisation et Simulation Multi-Échelle, MSME UMR 8208 CNRS, Université Paris-Est, 5 bd Descartes, 77454 Marne-la-Vallée, France
- Institut des Sciences Chimiques de Rennes, UMR 6226 CNRS-Université de Rennes 1, 263 Avenue
du Général Leclerc, 35042 Rennes Cedex, France
| | - Cloé Azarias
- Laboratoire CEISAM, UMR CNRS 6230, Université de Nantes, 2 Rue de la Houssinière, BP 92208, 44322 Nantes Cedex
3, France
| | - Denis Jacquemin
- Laboratoire CEISAM, UMR CNRS 6230, Université de Nantes, 2 Rue de la Houssinière, BP 92208, 44322 Nantes Cedex
3, France
- Institut Universitaire de France, 1 rue Descartes, 75005 Paris Cedex 05, France
| | - Boris Le Guennic
- Institut des Sciences Chimiques de Rennes, UMR 6226 CNRS-Université de Rennes 1, 263 Avenue
du Général Leclerc, 35042 Rennes Cedex, France
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Swavey S, Kumar SV, Erb J. Ruthenium(II) Polypyridyl Complexes Coordinated Directly to the Pyrrole Backbone of π-Extended Boron Dipyrromethene (Bodipy) Dyes: Synthesis, Characterization, and Spectroscopic and Electrochemical Properties. Inorg Chem 2017; 56:10664-10673. [DOI: 10.1021/acs.inorgchem.7b01630] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Shawn Swavey
- Department of Chemistry, University of Dayton, 300 College Park, Dayton, Ohio 45469-2357, United States
| | - Sreedhar V. Kumar
- Department of Chemistry, University of Dayton, 300 College Park, Dayton, Ohio 45469-2357, United States
| | - Jeremy Erb
- Department of Chemistry, University of Dayton, 300 College Park, Dayton, Ohio 45469-2357, United States
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Momeni MR, Brown A. Why do TD-DFT excitation energies of BODIPY/Aza-BODIPY families largely deviate from experiment? Answers from electron correlated and multireference methods. J Chem Theory Comput 2016; 11:2619-32. [PMID: 26575559 DOI: 10.1021/ct500775r] [Citation(s) in RCA: 126] [Impact Index Per Article: 15.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
The vertical excitation energies of 17 boron-dipyrromethene (BODIPY) core structures with a variety of substituents and ring sizes are benchmarked using time-dependent density functional theory (TD-DFT) with nine different functionals combined with the cc-pVTZ basis set. When compared to experimental measurements, all functionals provide mean absolute errors (mean AEs) greater than 0.3 eV, larger than the 0.1-0.3 eV differences typically expected from TD-DFT. Due to the high linear correlation of TD-DFT results with experiment, most functionals can be used to predict excitation energies if corrected empirically. Using the CAM-B3LYP functional, 0-0 transition energies are determined, and while the absolute difference is improved (mean AE = 0.478 eV compared to 0.579 eV), the correlation diminishes substantially (R(2) = 0.961 to 0.862). Two very recently introduced charge transfer (CT) indices, q(CT) and d(CT), and electron density difference (EDD) plots demonstrate that CT does not play a significant role for most of the BODIPYs examined and, thus, cannot be the source of error in TD-DFT. To assess TD-DFT methods, vertical excitation energies are determined utilizing TD-HF, configuration interaction CIS and CIS(D), equation of motion EOM-CCSD, SAC-CI, and Laplace-transform based local coupled-cluster singles and approximate doubles LCC2* methods. Moreover, multireference CASSCF and CASPT2 vertical excitation energies were also obtained for all species (except CASPT2 was not feasible for the four largest systems). The SAC-CI/cc-pVDZ, LCC2*/cc-pVDZ, and CASPT2/cc-pVDZ approaches are shown to have the smallest mean AEs of 0.154, 0.109, and 0.100 eV, respectively; the utility of the LCC2* approach is demonstrated for eight extended BODIPYs and aza-BODIPYs. We found that the problems with TD-DFT arise from difficulties in dealing with the differential electron correlation (as assessed by comparing CCS, CC2, LR-CCSD, CCSDR(T), and CCSDR(3) vertical excitation energies for five compounds) and from contributions of multireference character and double excitations (from analysis of the CASSCF wave functions).
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Affiliation(s)
- Mohammad R Momeni
- Department of Chemistry, University of Alberta , Edmonton, Alberta T6G 2G2, Canada
| | - Alex Brown
- Department of Chemistry, University of Alberta , Edmonton, Alberta T6G 2G2, Canada
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Roubinet B, Massif C, Moreau M, Boschetti F, Ulrich G, Ziessel R, Renard PY, Romieu A. New 3-(Heteroaryl)-2-iminocoumarin-based Borate Complexes: Synthesis, Photophysical Properties, and Rational Functionalization for Biosensing/Biolabeling Applications. Chemistry 2015; 21:14589-601. [DOI: 10.1002/chem.201502126] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2015] [Indexed: 01/26/2023]
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5
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Mukherjee S, Thilagar P. Effect of alkyl substituents in BODIPYs: a comparative DFT computational investigation. RSC Adv 2015. [DOI: 10.1039/c4ra12071j] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022] Open
Abstract
A detailed computational investigation encompassing the effects of alkyl groups on the structural and electronic properties of BODIPY dyes is presented.
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Affiliation(s)
- Sanjoy Mukherjee
- Department of Inorganic and Physical Chemistry
- Indian Institute of Science
- Bangalore-560012
- India
| | - Pakkirisamy Thilagar
- Department of Inorganic and Physical Chemistry
- Indian Institute of Science
- Bangalore-560012
- India
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Filarowski A, Lopatkova M, Lipkowski P, Van der Auweraer M, Leen V, Dehaen W. Solvatochromism of BODIPY-Schiff dye. J Phys Chem B 2014; 119:2576-84. [PMID: 25470764 DOI: 10.1021/jp508718d] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
A boron-dipyrrin chromophore connected with an o-hydroxyaryl aldimine by a diazo bridge (BODIPY-Schiff dye) has been developed. The photophysical properties of the BODIPY-Schiff dye have been investigated with UV, steady-state, and time-resolved fluorimetry. The spectral features have been characterized with respect to density functional theory and time-dependent density functional theory. The conformational analysis of the studied compound has been accomplished both in the ground and excited states. A scheme of the processes occurring in the BODIPY-Schiff dye has been proposed.
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Affiliation(s)
- Aleksander Filarowski
- Faculty of Chemistry, University of Wroclaw , F. Joliot-Curie 14, 50-383 Wrocław, Poland
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Zaleśny R, Murugan NA, Gel’mukhanov F, Rinkevicius Z, Ośmiałowski B, Bartkowiak W, Ågren H. Toward Fully Nonempirical Simulations of Optical Band Shapes of Molecules in Solution: A Case Study of Heterocyclic Ketoimine Difluoroborates. J Phys Chem A 2014; 119:5145-52. [DOI: 10.1021/jp5094417] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
| | | | | | | | - Borys Ośmiałowski
- Faculty
of Chemical Technology and Engineering, UTP University of Science and Technology, Seminaryjna 3, PL-85326 Bydgoszcz, Poland
| | - Wojciech Bartkowiak
- Institute
of Physical and Theoretical Chemistry, Wroclaw University of Technology, Wyb. Wyspiańskiego 27, PL-50370 Wrocław, Poland
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Jacquemin D, Chibani S, Le Guennic B, Mennucci B. Solvent Effects on Cyanine Derivatives: A PCM Investigation. J Phys Chem A 2014; 118:5343-8. [DOI: 10.1021/jp504591t] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Denis Jacquemin
- Laboratoire CEISAM, UMR CNRS 6230, Université de Nantes, 2 Rue de la Houssinière, BP 92208, 44322 Nantes Cedex
3, France
- Institut Universitaire de France, 103, bd Saint-Michel, F-75005 Paris Cedex 05, France
| | - Siwar Chibani
- Laboratoire CEISAM, UMR CNRS 6230, Université de Nantes, 2 Rue de la Houssinière, BP 92208, 44322 Nantes Cedex
3, France
| | - Boris Le Guennic
- Institut des Sciences Chimiques de Rennes, CNRS-Université de Rennes 1, 1 Av. du Général Leclerc, 35042 Rennes Cedex, France
| | - Benedetta Mennucci
- Department
of Chemistry, University of Pisa, Via Risorgimento 35, 56126 Pisa, Italy
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9
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Alberto ME, De Simone BC, Mazzone G, Quartarolo AD, Russo N. Theoretical Determination of Electronic Spectra and Intersystem Spin–Orbit Coupling: The Case of Isoindole-BODIPY Dyes. J Chem Theory Comput 2014; 10:4006-13. [DOI: 10.1021/ct500426h] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Marta E. Alberto
- Dipartimento di Chimica e
Tecnologie Chimiche, Università della Calabria, I-87036 Arcavacata di Rende, Italy
| | - Bruna C. De Simone
- Dipartimento di Chimica e
Tecnologie Chimiche, Università della Calabria, I-87036 Arcavacata di Rende, Italy
| | - Gloria Mazzone
- Dipartimento di Chimica e
Tecnologie Chimiche, Università della Calabria, I-87036 Arcavacata di Rende, Italy
| | - Angelo D. Quartarolo
- Dipartimento di Chimica e
Tecnologie Chimiche, Università della Calabria, I-87036 Arcavacata di Rende, Italy
| | - Nino Russo
- Dipartimento di Chimica e
Tecnologie Chimiche, Università della Calabria, I-87036 Arcavacata di Rende, Italy
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Charaf-Eddin A, Cauchy T, Felpin FX, Jacquemin D. Vibronic spectra of organic electronic chromophores. RSC Adv 2014. [DOI: 10.1039/c4ra10731d] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022] Open
Abstract
Vibronic effects in organic electronic building blocks are presented.
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Affiliation(s)
- Azzam Charaf-Eddin
- Chimie Et Interdisciplinarité
- Synthèse, Analyse, Modélisation (CEISAM)
- UMR CNRS no. 6230
- Université de Nantes
- 44322 Nantes, Cedex 3, France
| | - Thomas Cauchy
- Laboratoire MOLTECH-Anjou – UMR CNRS 6200
- Université d’Angers
- 49045 Angers, France
| | - François-Xavier Felpin
- Chimie Et Interdisciplinarité
- Synthèse, Analyse, Modélisation (CEISAM)
- UMR CNRS no. 6230
- Université de Nantes
- 44322 Nantes, Cedex 3, France
| | - Denis Jacquemin
- Chimie Et Interdisciplinarité
- Synthèse, Analyse, Modélisation (CEISAM)
- UMR CNRS no. 6230
- Université de Nantes
- 44322 Nantes, Cedex 3, France
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