1
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Kerfahi D, Dong K, Tripathi B, Adams JM. Global comparison shows that soil bacterial communities in extreme pH soils are more structured by deterministic processes. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 942:173662. [PMID: 38830413 DOI: 10.1016/j.scitotenv.2024.173662] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/12/2023] [Revised: 05/12/2024] [Accepted: 05/29/2024] [Indexed: 06/05/2024]
Abstract
A major aim of microbial ecology is the search for basic 'rules' that dominate variation in microbial communities. An earlier comparison of several soil successional series showed that pH explained variation in the relative importance of stochastic versus deterministic processes in bacterial communities. In neutral pH soils, bacterial communities were more strongly influenced by stochastic processes than in low or high pH soils. Here, we took a broad level approach to attempt a more definitive answer of whether soil pH dominates bacterial community structuring using the global database of 237 samples. The beta-NTI showed that at both a global and continental scale, samples with low pH were dominated by deterministic processes, while in samples at around neutral pH, stochastic processes dominated. At high pH, stochasticity dominated on the global scale, but on several continents, the beta-NTI showed determinism predominating. Overall, it appears that bacterial community structuring is strongly and predictably affected by pH, with the most consistent difference observed between determinism at low pH and stochasticity at neutral pH. There is a need for hypothesis testing to explain why this trend exists. It is possible that at low pH, there is a greater selection for consortia to exploit resources, which leads to more predictable, deterministic combinations of species co-occurring. Additionally, the high energy demands for homeostasis and the constraints from the lack of available nutrient resources may impose greater niche-based competition, resulting in more deterministic community structuring at low pH.
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Affiliation(s)
- Dorsaf Kerfahi
- School of Natural Sciences, Department of Biological Sciences, Keimyung University, Daegu 42601, Republic of Korea
| | - Ke Dong
- Department of Life Science, Kyonggi University, Suwon-si 16227, Republic of Korea
| | - Binu Tripathi
- Division of Plant and Soil Sciences, West Virginia University, United States of America.
| | - Jonathan M Adams
- School of Geography and Ocean Science, Nanjing University, Nanjing 210008, China.
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2
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Maurya N, Sharma A, Sundaram S. The Role of PGPB-Microalgae interaction in Alleviating Salt Stress in Plants. Curr Microbiol 2024; 81:270. [PMID: 39012372 DOI: 10.1007/s00284-024-03805-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2024] [Accepted: 07/12/2024] [Indexed: 07/17/2024]
Abstract
Plant development and yield are severely hampered by climate change. Plants are very prone to a variety of abiotic stressors during growth, making them susceptible to destruction which can reduce the productivity by 20-60%. These stresses generate reactive oxygen species (ROS), which damage lipids, proteins, and nucleic acids. Microalgae and plant growth-promoting bacteria (PGPB) are remarkably effective at reducing the effects of salt stress and promoting plant growth, thereby increasing agricultural yield, and helping ensure global food security. Through a variety of mechanisms, including the production of phytohormones, 1-aminocyclopropane-1-carboxylic acid deaminase, exopolysaccharide, siderophores, hydrogen cyanide, extracellular polymeric substances, volatile organic compounds, and modulation of antioxidants defense machinery under abiotic stresses promote plant growth after inoculation of PGPB and microalgae. These microorganisms also maintain ion homeostasis, offer osmotic balance, stimulate genes that respond to salt and drought, rewire the metabolism, modify the transcription of ion transporter genes, and more. To counteract the negative consequences of salinity stress, this study summarizes the effects of PGPB- microalgae along with a tentative protective mechanism during salinity stress for sustainable agriculture.
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Affiliation(s)
- Neetu Maurya
- Centre of Biotechnology, University of Allahabad, Uttar Pradesh, Prayagraj, 211002, India
| | - Abhijeet Sharma
- Centre of Biotechnology, University of Allahabad, Uttar Pradesh, Prayagraj, 211002, India
| | - Shanthy Sundaram
- Centre of Biotechnology, University of Allahabad, Uttar Pradesh, Prayagraj, 211002, India.
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3
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Avalon N, Reis MA, Thornburg CC, Williamson RT, Petras D, Aron AT, Neuhaus GF, Al-Hindy M, Mitrevska J, Ferreira L, Morais J, El Abiead Y, Glukhov E, Alexander KL, Vulpanovici FA, Bertin MJ, Whitner S, Choi H, Spengler G, Blinov K, Almohammadi AM, Shaala LA, Kew WR, Paša-Tolić L, Youssef DTA, Dorrestein PC, Vasconcelos V, Gerwick L, McPhail KL, Gerwick WH. Leptochelins A-C, Cytotoxic Metallophores Produced by Geographically Dispersed Leptothoe Strains of Marine Cyanobacteria. J Am Chem Soc 2024; 146:18626-18638. [PMID: 38918178 PMCID: PMC11240249 DOI: 10.1021/jacs.4c05399] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2024] [Revised: 06/10/2024] [Accepted: 06/11/2024] [Indexed: 06/27/2024]
Abstract
Metals are important cofactors in the metabolic processes of cyanobacteria, including photosynthesis, cellular respiration, DNA replication, and the biosynthesis of primary and secondary metabolites. In adaptation to the marine environment, cyanobacteria use metallophores to acquire trace metals when necessary as well as to reduce potential toxicity from excessive metal concentrations. Leptochelins A-C were identified as structurally novel metallophores from three geographically dispersed cyanobacteria of the genus Leptothoe. Determination of the complex structures of these metabolites presented numerous challenges, but they were ultimately solved using integrated data from NMR, mass spectrometry and deductions from the biosynthetic gene cluster. The leptochelins are comprised of halogenated linear NRPS-PKS hybrid products with multiple heterocycles that have potential for hexadentate and tetradentate coordination with metal ions. The genomes of the three leptochelin producers were sequenced, and retrobiosynthetic analysis revealed one candidate biosynthetic gene cluster (BGC) consistent with the structure of leptochelin. The putative BGC is highly homologous in all three Leptothoe strains, and all possess genetic signatures associated with metallophores. Postcolumn infusion of metals using an LC-MS metabolomics workflow performed with leptochelins A and B revealed promiscuous binding of iron, copper, cobalt, and zinc, with greatest preference for copper. Iron depletion and copper toxicity experiments support the hypothesis that leptochelin metallophores may play key ecological roles in iron acquisition and in copper detoxification. In addition, the leptochelins possess significant cytotoxicity against several cancer cell lines.
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Affiliation(s)
- Nicole
E. Avalon
- Center
for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California San Diego, La Jolla, California 92093, United States
| | - Mariana A. Reis
- CIIMAR/CIMAR,
Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Matosinhos 4450-208, Portugal
| | | | - R. Thomas Williamson
- Department
of Chemistry and Biochemistry, University
of North Carolina Wilmington, Wilmington, North Carolina 28403, United States
| | - Daniel Petras
- Skaggs
School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, California 92093, United States
- Department
of Biochemistry, University of California
Riverside, Riverside, California 92507, United States
- CMFI Cluster
of Excellence, University of Tuebingen, Tuebingen 72706, Germany
| | - Allegra T. Aron
- Skaggs
School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, California 92093, United States
- Department
of Chemistry and Biochemistry, University
of Denver, Denver, Colorado 80210, United States
| | - George F. Neuhaus
- College
of Pharmacy, Oregon State University, Corvallis, Oregon 97331, United States
| | - Momen Al-Hindy
- Center
for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California San Diego, La Jolla, California 92093, United States
| | - Jana Mitrevska
- Center
for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California San Diego, La Jolla, California 92093, United States
| | - Leonor Ferreira
- CIIMAR/CIMAR,
Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Matosinhos 4450-208, Portugal
| | - João Morais
- CIIMAR/CIMAR,
Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Matosinhos 4450-208, Portugal
| | - Yasin El Abiead
- Skaggs
School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, California 92093, United States
| | - Evgenia Glukhov
- Center
for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California San Diego, La Jolla, California 92093, United States
| | - Kelsey L. Alexander
- Center
for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California San Diego, La Jolla, California 92093, United States
- Department
of Chemistry and Biochemistry, University
of California San Diego, La Jolla, California 92093, United States
| | | | - Matthew J. Bertin
- Center
for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California San Diego, La Jolla, California 92093, United States
| | - Syrena Whitner
- Center
for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California San Diego, La Jolla, California 92093, United States
| | - Hyukjae Choi
- College
of Pharmacy, Yeungnam University, Gyeongsan, Gyeong-buk 38541, South Korea
| | - Gabriella Spengler
- Department
of Medical Microbiology, Albert Szent-Györgyi Health Center
and Albert Szent-Györgyi Medical School, University of Szeged, Szeged 6725, Hungary
| | - Kirill Blinov
- Molecule
Apps, LLC, Corvallis, Oregon 97330, United States
| | - Ameen M. Almohammadi
- Department
of Pharmacy Practice, Faculty of Pharmacy, King Abdulaziz University, Jeddah 21589, Kingdom
of Saudi Arabia
| | - Lamiaa A. Shaala
- Suez Canal
University Hospital, Suez Canal University, Ismailia 41522, Egypt
| | - William R. Kew
- Environmental
Molecular Sciences Laboratory, Pacific Northwest
National Laboratory, Richland, Washington 99354, United States
| | - Ljiljana Paša-Tolić
- Environmental
Molecular Sciences Laboratory, Pacific Northwest
National Laboratory, Richland, Washington 99354, United States
| | - Diaa T. A. Youssef
- Department
of Natural Products, Faculty of Pharmacy, King Abdulaziz University, Jeddah 21589, Kingdom
of Saudi Arabia
- Department
of Pharmacognosy, Faculty of Pharmacy, Suez
Canal University, Ismailia 41522, Egypt
| | - Pieter C. Dorrestein
- Skaggs
School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, California 92093, United States
| | - Vitor Vasconcelos
- CIIMAR/CIMAR,
Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Matosinhos 4450-208, Portugal
| | - Lena Gerwick
- Center
for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California San Diego, La Jolla, California 92093, United States
| | - Kerry L. McPhail
- College
of Pharmacy, Oregon State University, Corvallis, Oregon 97331, United States
| | - William H. Gerwick
- Center
for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California San Diego, La Jolla, California 92093, United States
- Skaggs
School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, California 92093, United States
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4
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Bernacchi A, Semenzato G, di Mascolo M, Amata S, Bechini A, Berti F, Calonico C, Catania V, Emiliani G, Esposito A, Greco C, Mocali S, Mucci N, Padula A, Piccionello AP, Nasanbat B, Davaakhuu G, Bazarragchaa M, Riga F, Augugliaro C, Puglia AM, Zaccaroni M, Renato F. Antibacterial activity of Arthrobacter strains isolated from Great Gobi A Strictly Protected Area, Mongolia. AIMS Microbiol 2024; 10:161-186. [PMID: 38525036 PMCID: PMC10955175 DOI: 10.3934/microbiol.2024009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2023] [Revised: 02/01/2024] [Accepted: 02/22/2024] [Indexed: 03/26/2024] Open
Abstract
Desert soil hosts many microorganisms, whose activities are essential from an ecological viewpoint. Moreover, they are of great anthropic interest. The knowledge of extreme environments microbiomes may be beneficial for agriculture, technology, and human health. In this study, 11 Arthrobacter strains from topsoil samples collected from the Great Gobi A Strictly Protected Area in the Gobi Desert, were characterized by a combination of different techniques. The phylogenetic analysis, performed using their 16S rDNA sequences and the most similar Arthrobacter sequences found in databases, revealed that most of them were close to A. crystallopoietes, while others joined a sister group to the clade formed by A. humicola, A. pascens, and A. oryzae. The resistance of each strain to different antibiotics, heavy-metals, and NaCl was also tested as well as the inhibitory potential against human pathogens (i.e., Burkholderia ssp., Klebsiella pneumoniae, Pseudomonas aeruginosa, and Staphylococcus ssp.) via cross-streaking, to check the production of metabolites with antimicrobial activity. Data obtained revealed that all strains were resistant to heavy metals and were able to strongly interfere with the growth of many of the human pathogens tested. The volatile organic compounds (VOCs) profile of the 11 Arthrobacter strains was also analyzed. A total of 16 different metabolites were found, some of which were already known for having an inhibitory action against different Gram-positive and Gram-negative bacteria. Isolate MS-3A13, producing the highest quantity of VOCs, is the most efficient against Burkholderia cepacia complex (Bcc), K. pneumoniae, and coagulase-negative Staphylococci (CoNS) strains. This work highlights the importance of understanding microbial populations' phenotypical characteristics and dynamics in extreme environments to uncover the antimicrobial potential of new species and strains.
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Affiliation(s)
- Alberto Bernacchi
- Department of Biology, University of Florence, Via Madonna del Piano 6, Sesto Fiorentino, 50019 Florence, Italy
| | - Giulia Semenzato
- Department of Biology, University of Florence, Via Madonna del Piano 6, Sesto Fiorentino, 50019 Florence, Italy
| | - Manuel di Mascolo
- Department of Biology, University of Florence, Via Madonna del Piano 6, Sesto Fiorentino, 50019 Florence, Italy
| | - Sara Amata
- Department of Biological, Chemical and Pharmaceutical Sciences and Technologies-STEBICEF, University of Palermo, Viale delle Scienze Ed.17, 90128, Palermo, Italy
| | - Angela Bechini
- Department of Health Sciences, University of Florence, viale G.B. Morgagni, 48, 50134 Firenze, Italy
| | - Fabiola Berti
- Department of Health Sciences, University of Florence, viale G.B. Morgagni, 48, 50134 Firenze, Italy
| | - Carmela Calonico
- Department of Health Sciences, University of Florence, viale G.B. Morgagni, 48, 50134 Firenze, Italy
| | - Valentina Catania
- Department of Earth and Sea Science (DiSTeM), University of Palermo, Viale delle Scienze Blg. 16, Palermo, 90128, Italy
| | - Giovanni Emiliani
- Institute for Sustainable Plant Protection (IPSP)—National Research Council (CNR), Via Madonna del Piano 10, Sesto Fiorentino 50019 Florence, Italy
| | - Antonia Esposito
- Council for Agricultural and Economics Research (CREA) – Agriculture and Environment, Via di Lanciola 12/A, Cascine del Riccio, 50125, Florence, Italy
| | - Claudia Greco
- Unit for Conservation Genetics (BIO-CGE), Institute for Environmental Protection and Research, via Ca' Fornacetta, 9, 40064 Ozzano dell'Emilia Bologna, Italy
| | - Stefano Mocali
- Council for Agricultural and Economics Research (CREA) – Agriculture and Environment, Via di Lanciola 12/A, Cascine del Riccio, 50125, Florence, Italy
| | - Nadia Mucci
- Unit for Conservation Genetics (BIO-CGE), Institute for Environmental Protection and Research, via Ca' Fornacetta, 9, 40064 Ozzano dell'Emilia Bologna, Italy
| | - Anna Padula
- Unit for Conservation Genetics (BIO-CGE), Institute for Environmental Protection and Research, via Ca' Fornacetta, 9, 40064 Ozzano dell'Emilia Bologna, Italy
| | - Antonio Palumbo Piccionello
- Department of Biological, Chemical and Pharmaceutical Sciences and Technologies-STEBICEF, University of Palermo, Viale delle Scienze Ed.17, 90128, Palermo, Italy
| | - Battogtokh Nasanbat
- Institute of Biology, Mongolian Academy of Sciences, Peace Avenue-54B, Bayanzurkh District, Ulaanbaatar-13330, Mongolia
| | - Gantulga Davaakhuu
- Institute of Biology, Mongolian Academy of Sciences, Peace Avenue-54B, Bayanzurkh District, Ulaanbaatar-13330, Mongolia
| | | | - Francesco Riga
- Italian Institute for Envioronmental Protection and Research, via Vitalino Brancati, 48, 00144, Roma, Italy
| | - Claudio Augugliaro
- Wildlife Initiative, Bayangol, 6th Khoroo, Micro District 10, Ulaanbaatar, 210349, Mongolia
| | | | - Marco Zaccaroni
- Department of Biology, University of Florence, Via Madonna del Piano 6, Sesto Fiorentino, 50019 Florence, Italy
| | - Fani Renato
- Department of Biology, University of Florence, Via Madonna del Piano 6, Sesto Fiorentino, 50019 Florence, Italy
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5
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Esposito A, Del Duca S, Vitali F, Bigiotti G, Mocali S, Semenzato G, Papini A, Santini G, Mucci N, Padula A, Greco C, Nasanbat B, Davaakhuu G, Bazarragchaa M, Riga F, Augugliaro C, Cecchi L, Fani R, Zaccaroni M. The Great Gobi A Strictly Protected Area: Characterization of Soil Bacterial Communities from Four Oases. Microorganisms 2024; 12:320. [PMID: 38399724 PMCID: PMC10891509 DOI: 10.3390/microorganisms12020320] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2023] [Revised: 01/30/2024] [Accepted: 02/01/2024] [Indexed: 02/25/2024] Open
Abstract
Understanding how microbial communities survive in extreme environmental pressure is critical for interpreting ecological patterns and microbial diversity. Great Gobi A Strictly Protected Area represents an intriguing model for studying the bacterial community since it is a protected and intact wild area of the Mongolian desert. In this work, the composition of a bacterial community of the soil from four oases was characterized by extracting total DNA and sequencing through the Illumina NovaSeq platform. In addition, the soil's chemical and physical properties were determined, and their influence on shaping the microbial communities was evaluated. The results showed a high variability of bacterial composition among oases. Moreover, combining specific chemical and physical parameters significantly shapes the bacterial community among oases. Data obtained suggested that the oases were highly variable in physiochemical parameters and bacterial communities despite the similar extreme climate conditions. Moreover, core functional microbiome were constituted by aerobic chemoheterotrophy and chemoheterotrophy, mainly contributed by the most abundant bacteria, such as Actinobacteriota, Pseudomonadota, and Firmicutes. This result supposes a metabolic flexibility for sustaining life in deserts. Furthermore, as the inhabitants of the extreme regions are likely to produce new chemical compounds, isolation of key taxa is thus encouraged.
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Affiliation(s)
- Antonia Esposito
- Council for Agricultural Research and Economics, Research Centre for Agriculture and Environment, 50125 Florence, Italy; (A.E.); (S.D.D.); (F.V.); (G.B.); (S.M.)
- Department of Biology, University of Florence, Via Madonna del Piano 6, Sesto Fiorentino, 50019 Florence, Italy; (G.S.); (A.P.); (G.S.)
| | - Sara Del Duca
- Council for Agricultural Research and Economics, Research Centre for Agriculture and Environment, 50125 Florence, Italy; (A.E.); (S.D.D.); (F.V.); (G.B.); (S.M.)
| | - Francesco Vitali
- Council for Agricultural Research and Economics, Research Centre for Agriculture and Environment, 50125 Florence, Italy; (A.E.); (S.D.D.); (F.V.); (G.B.); (S.M.)
| | - Gaia Bigiotti
- Council for Agricultural Research and Economics, Research Centre for Agriculture and Environment, 50125 Florence, Italy; (A.E.); (S.D.D.); (F.V.); (G.B.); (S.M.)
| | - Stefano Mocali
- Council for Agricultural Research and Economics, Research Centre for Agriculture and Environment, 50125 Florence, Italy; (A.E.); (S.D.D.); (F.V.); (G.B.); (S.M.)
| | - Giulia Semenzato
- Department of Biology, University of Florence, Via Madonna del Piano 6, Sesto Fiorentino, 50019 Florence, Italy; (G.S.); (A.P.); (G.S.)
| | - Alessio Papini
- Department of Biology, University of Florence, Via Madonna del Piano 6, Sesto Fiorentino, 50019 Florence, Italy; (G.S.); (A.P.); (G.S.)
| | - Giacomo Santini
- Department of Biology, University of Florence, Via Madonna del Piano 6, Sesto Fiorentino, 50019 Florence, Italy; (G.S.); (A.P.); (G.S.)
| | - Nadia Mucci
- Unit for Conservation Genetics (BIO-CGE), Institute for Environmental Protection and Research, Via Ca’ Fornacetta, 9, Ozzano dell’Emilia, 40064 Bologna, Italy; (N.M.); (A.P.); (C.G.)
| | - Anna Padula
- Unit for Conservation Genetics (BIO-CGE), Institute for Environmental Protection and Research, Via Ca’ Fornacetta, 9, Ozzano dell’Emilia, 40064 Bologna, Italy; (N.M.); (A.P.); (C.G.)
| | - Claudia Greco
- Unit for Conservation Genetics (BIO-CGE), Institute for Environmental Protection and Research, Via Ca’ Fornacetta, 9, Ozzano dell’Emilia, 40064 Bologna, Italy; (N.M.); (A.P.); (C.G.)
| | - Battogtokh Nasanbat
- Institute of Biology, Mongolian Academy of Sciences, Peace Avenue-54B, Bayanzurkh District, Ulaanbaatar 13330, Mongolia; (B.N.); (G.D.)
| | - Gantulga Davaakhuu
- Institute of Biology, Mongolian Academy of Sciences, Peace Avenue-54B, Bayanzurkh District, Ulaanbaatar 13330, Mongolia; (B.N.); (G.D.)
| | - Munkhtsetseg Bazarragchaa
- Department of Molecular Biology and Genetics, School of Bio-Medicine, Mongolian National University of Medical Sciences, Ulaanbaatar 14210, Mongolia;
| | - Francesco Riga
- Italian Institute for Environmental Protection and Research (ISPRA), Via Brancati 48, 00144 Rome, Italy;
| | | | - Lorenzo Cecchi
- Natural History Museum, Botanical Collections “Filippo Parlatore”—Via Giorgio la Pira 4, 50121 Florence, Italy;
| | - Renato Fani
- Department of Biology, University of Florence, Via Madonna del Piano 6, Sesto Fiorentino, 50019 Florence, Italy; (G.S.); (A.P.); (G.S.)
| | - Marco Zaccaroni
- Department of Biology, University of Florence, Via Madonna del Piano 6, Sesto Fiorentino, 50019 Florence, Italy; (G.S.); (A.P.); (G.S.)
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6
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Hoque MZ, Alqahtani A, Sankaran S, Anand D, Musa MM, Nzila A, Guerriero G, Siddiqui KS, Ahmad I. Enhanced biodegradation of phenanthrene and anthracene using a microalgal-bacterial consortium. Front Microbiol 2023; 14:1227210. [PMID: 37771703 PMCID: PMC10525690 DOI: 10.3389/fmicb.2023.1227210] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2023] [Accepted: 08/28/2023] [Indexed: 09/30/2023] Open
Abstract
Polycyclic aromatic hydrocarbons (PAHs) are chemicals that are released into the environment during activities of the petroleum industry. The bioaccumulation, carcinogenic and mutagenic potential of PAHs necessitates the bioremediation of these contaminants. However, bioremediation of PAHs has a number of limitations including the inability of a single microbe to degrade all of the PAH fraction's environmental constituents. Therefore, a different paradigm, employing microalgal-bacterial consortium (MBC), may be used to effectively remove PAHs contaminants. In this type of interaction, the microalgae and bacteria species in the consortium work together in a way that enhances the overall performance of the MBC. Bacterial species in the consortium provide essential nutrients or growth factors by degrading toxic substances and provide these to microalgae, while the microalgae species provide organic carbon for the bacterial species to grow. For the first time, the ability of Gonium pectorale (G. pectorale) microalgae to break down phenanthrene (PHE) and anthracene (ANT) was investigated. Phenanthrene was shown to be more effectively degraded by G. pectorale (98%) as compared to Bacillus licheniformis (B. licheniformis) 19%. Similarly, G. pectorale has effectively degrade anthracene (98%) as compared with B. licheniformis (45%). The consortia of G. pectorale and B. licheniformis has shown a slight increase in the degradation of PHE (96%) and ANT (99%). Our findings show that B. licheniformis did not inhibit the growth of G. pectorale and in the consortia has effectively eliminated the PAHs from the media. Therefore G. pectorale has a tremendous potential to remove PAHs from the polluted environment. Future research will be conducted to assess Gonium's capacity to eliminate PAHs that exhibit high molar masses than that of PHE and ANT.
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Affiliation(s)
- Mubasher Zahir Hoque
- Department of Bioengineering, King Fahd University of Petroleum and Minerals, Dhahran, Saudi Arabia
| | - Abdulrahman Alqahtani
- Department of Bioengineering, King Fahd University of Petroleum and Minerals, Dhahran, Saudi Arabia
| | - Saravanan Sankaran
- Department of Bioengineering, King Fahd University of Petroleum and Minerals, Dhahran, Saudi Arabia
| | - Deepak Anand
- Department of Bioengineering, King Fahd University of Petroleum and Minerals, Dhahran, Saudi Arabia
| | - Musa M Musa
- Department of Chemistry, King Fahd University of Petroleum and Minerals, Dhahran, Saudi Arabia
- Interdisciplinary Research Center for Refining and Advanced Chemicals, King Fahd University of Petroleum and Minerals, Dhahran, Saudi Arabia
| | - Alexis Nzila
- Department of Bioengineering, King Fahd University of Petroleum and Minerals, Dhahran, Saudi Arabia
- Interdisciplinary Research Center for Membranes and Water Security, King Fahd University of Petroleum and Minerals, Dhahran, Saudi Arabia
| | - Gea Guerriero
- Environmental Research and Innovation (ERIN) Department, Luxembourg Institute of Science and Technology, Hautcharage, Luxembourg
| | - Khawar Sohail Siddiqui
- School of Biotechnology and Biomolecular Sciences (BABS), The University of New South Wales, Sydney, NSW, Australia
| | - Irshad Ahmad
- Department of Bioengineering, King Fahd University of Petroleum and Minerals, Dhahran, Saudi Arabia
- Interdisciplinary Research Center for Membranes and Water Security, King Fahd University of Petroleum and Minerals, Dhahran, Saudi Arabia
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7
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do Amaral SC, Xavier LP, Vasconcelos V, Santos AV. Cyanobacteria: A Promising Source of Antifungal Metabolites. Mar Drugs 2023; 21:359. [PMID: 37367684 DOI: 10.3390/md21060359] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2023] [Revised: 05/23/2023] [Accepted: 05/27/2023] [Indexed: 06/28/2023] Open
Abstract
Cyanobacteria are a rich source of secondary metabolites, and they have received a great deal of attention due to their applicability in different industrial sectors. Some of these substances are known for their notorious ability to inhibit fungal growth. Such metabolites are very chemically and biologically diverse. They can belong to different chemical classes, including peptides, fatty acids, alkaloids, polyketides, and macrolides. Moreover, they can also target different cell components. Filamentous cyanobacteria have been the main source of these compounds. This review aims to identify the key features of these antifungal agents, as well as the sources from which they are obtained, their major targets, and the environmental factors involved when they are being produced. For the preparation of this work, a total of 642 documents dating from 1980 to 2022 were consulted, including patents, original research, review articles, and theses.
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Affiliation(s)
- Samuel Cavalcante do Amaral
- Laboratory of Biotechnology of Enzymes and Biotransformation, Biological Sciences Institute, Federal University of Pará, Belém 66075-110, Brazil
| | - Luciana Pereira Xavier
- Laboratory of Biotechnology of Enzymes and Biotransformation, Biological Sciences Institute, Federal University of Pará, Belém 66075-110, Brazil
| | - Vítor Vasconcelos
- CIIMAR/CIMAR, Interdisciplinary Centre of Marine and Environmental Research, Terminal de Cruzeiros do Porto de Leixões, University of Porto, 4450-208 Matosinhos, Portugal
- Departamento de Biologia, Faculdade de Ciências, Universidade do Porto, Rua do Campo Alegre, Edifício FC4, 4169-007 Porto, Portugal
| | - Agenor Valadares Santos
- Laboratory of Biotechnology of Enzymes and Biotransformation, Biological Sciences Institute, Federal University of Pará, Belém 66075-110, Brazil
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8
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Gu T, Lu Y, Li F, Zeng W, Shen L, Yu R, Li J. Microbial extracellular polymeric substances alleviate cadmium toxicity in rice (Oryza sativa L.) by regulating cadmium uptake, subcellular distribution and triggering the expression of stress-related genes. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2023; 257:114958. [PMID: 37116453 DOI: 10.1016/j.ecoenv.2023.114958] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/08/2023] [Revised: 04/11/2023] [Accepted: 04/23/2023] [Indexed: 05/08/2023]
Abstract
Cadmium (Cd) accumulation in crops causes potential risks to human health. Microbial extracellular polymeric substances (EPS) are a complex mixture of biopolymers that can bind various heavy metals. The present work examined the alleviating effects of EPS on Cd toxicity in rice and its detoxification mechanism. The 100 μM Cd stress hampered the overall plant growth and development, damaged the ultrastructures of both leaf and root cells, and caused severe lipid peroxidation in rice plants. However, applying EPS at a concentration of 100 mg/L during Cd stress resulted in increased biomass, reduced Cd accumulation and transport, and minimized the oxidative damage. EPS application also enhanced Cd retention in the shoot cell walls and root vacuoles, and actively altered the expression of genes involved in cell wall formation, antioxidant defense systems, transcription factors, and hormone metabolism. These findings provide new insights into EPS-mediated mitigation of Cd stress in plants and help us to develop strategies to improve crop yield in Cd-contaminated soils in the future.
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Affiliation(s)
- Tianyuan Gu
- School of Minerals Processing and Bioengineering, Central South University, Changsha, Hunan 410083, China; State Key Laboratory of Water Resources and Hydropower Engineering Science, Wuhan University, Wuhan, Hubei 430072, China
| | - Yongqing Lu
- School of Minerals Processing and Bioengineering, Central South University, Changsha, Hunan 410083, China
| | - Fang Li
- School of Minerals Processing and Bioengineering, Central South University, Changsha, Hunan 410083, China
| | - Weimin Zeng
- School of Minerals Processing and Bioengineering, Central South University, Changsha, Hunan 410083, China
| | - Li Shen
- School of Minerals Processing and Bioengineering, Central South University, Changsha, Hunan 410083, China
| | - Runlan Yu
- School of Minerals Processing and Bioengineering, Central South University, Changsha, Hunan 410083, China
| | - Jiaokun Li
- School of Minerals Processing and Bioengineering, Central South University, Changsha, Hunan 410083, China.
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9
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Gonzalez-Gonzalez LM, de-Bashan LE. The Potential of Microalgae-Bacteria Consortia to Restore Degraded Soils. BIOLOGY 2023; 12:biology12050693. [PMID: 37237506 DOI: 10.3390/biology12050693] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2023] [Revised: 05/02/2023] [Accepted: 05/04/2023] [Indexed: 05/28/2023]
Abstract
Soil restoration is one of the biggest challenges of this century. Besides the negative impacts of climate change, the current increase in food demands has put severe pressure on soil resources, resulting in a significant area of degraded land worldwide. However, beneficial microorganisms, such as microalgae and plant growth-promoting bacteria, have an outstanding ability to restore soil health and fertility. In this mini-review, we summarize state-of-the-art knowledge on these microorganisms as amendments that are used to restore degraded and contaminated soils. Furthermore, the potential of microbial consortia to maximize beneficial effects on soil health and boost the production of plant-growth-promoting compounds within a mutualistic interaction is discussed.
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Affiliation(s)
| | - Luz E de-Bashan
- The Bashan Institute of Science, 1730 Post Oak Ct, Auburn, AL 36830, USA
- Department of Entomology and Plant Pathology, Auburn University, 209 Life Sciences Building, Auburn, AL 36849, USA
- Environmental Microbiology Group, Northwestern Center for Biological Research (CIBNOR), Avenida IPN 195, La Paz 23096, Mexico
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10
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Chen Q, Yan N, Xiong K, Zhao J. Cyanobacterial diversity of biological soil crusts and soil properties in karst desertification area. Front Microbiol 2023; 14:1113707. [PMID: 36992925 PMCID: PMC10040852 DOI: 10.3389/fmicb.2023.1113707] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2022] [Accepted: 02/22/2023] [Indexed: 03/18/2023] Open
Abstract
As important components of the biological soil crusts (BSCs) and of the primary stage of crust succession, cyanobacterial communities occupy an important ecological niche and play an important ecological role in desertification areas. In this study, we focused on the karst desertification area, which also belongs to the same category of desertification, and selected three study areas, Guanling-Zhenfeng Huajiang (HJ), Bijie Salaxi (SLX), and Shibing (SB), in the Guizhou Plateau, which represents the overall ecological environment of South China karst, to conduct surveys on the diversity of BSC species and soil properties. Analysis of the cyanobacterial communities and physicochemical properties using the Shannon-Wiener diversity index, principal component analysis, and redundancy analysis revealed that: (1) The three study areas had common cyanobacterial species, with a total of 200 species distributed across 22 genera, 2 classes, 5 orders, and 6 families belonging to the Oscillatoriales (39%), Scytonematales (24.5%), Chroococcales (23%), Nostocales (11.5%), and Rivulariales (2%), (2) The number of species increased with the intensity of karst desertification—while Oscillatoriaceae was the dominant family in HJ and moderate–severe desertification areas, Chroococcaceae and Scytonemataceae were dominant in the mild and potential desertification areas SLX and SB, (3) The Shannon-Wiener diversity indices followed the trend: SLX (3.56) > SB (3.08) > HJ (3.01), indicating that the species were more evenly distributed in mild desertification, (4) In the carbonate background, shrubland harbored the largest number of cyanobacterial species compared to grassland, bare land, and arbor woodland; however, the highest number was documented in arbor woodland in dolomite karst, (5) The soil is weathered limestone or yellow soil in all three areas, with pH ranging from 5.73 to 6.85, fine sand dominated, and soil nutrients increased with the intensity of desertification, and (6) Redundancy analysis showed that organic carbon, soil moisture content (0–5 cm), and total nitrogen substantially influenced cyanobacterial diversity. These results reveal that differences in soil nutrient content play an important role in regulating the cyanobacterial diversity and composition, thereby establishing a foundation for further research and application of soil ecological restoration of cyanobacteria in BSCs of karst desertification areas.
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Affiliation(s)
- Qian Chen
- School of Karst Science, Guizhou Normal University, Guiyang, China
- State Engineering Technology Institute for Karst Desertification Control, Guizhou Normal University, Guiyang, China
| | - Ni Yan
- School of Karst Science, Guizhou Normal University, Guiyang, China
- State Engineering Technology Institute for Karst Desertification Control, Guizhou Normal University, Guiyang, China
- School of Life Science, Guizhou Normal University, Guiyang, China
| | - Kangning Xiong
- School of Karst Science, Guizhou Normal University, Guiyang, China
- State Engineering Technology Institute for Karst Desertification Control, Guizhou Normal University, Guiyang, China
- *Correspondence: Kangning Xiong,
| | - Jiawei Zhao
- School of Karst Science, Guizhou Normal University, Guiyang, China
- State Engineering Technology Institute for Karst Desertification Control, Guizhou Normal University, Guiyang, China
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11
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Draft Genome Sequences of Two Enterobacter hormaechei subsp. xiangfangensis Strains Isolated from the Moroccan Sahara. Microbiol Resour Announc 2023; 12:e0108722. [PMID: 36633415 PMCID: PMC9933648 DOI: 10.1128/mra.01087-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023] Open
Abstract
We report the draft genome sequences of Enterobacter hormaechei subsp. xiangfangensis strains MDMC82 and MDMC76, which were isolated from the sand dunes of the Merzouga desert in the Moroccan Sahara. These bacteria are able to tolerate the harsh environmental conditions of the Moroccan desert.
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12
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Osorio-Reyes JG, Valenzuela-Amaro HM, Pizaña-Aranda JJP, Ramírez-Gamboa D, Meléndez-Sánchez ER, López-Arellanes ME, Castañeda-Antonio MD, Coronado-Apodaca KG, Gomes Araújo R, Sosa-Hernández JE, Melchor-Martínez EM, Iqbal HMN, Parra-Saldivar R, Martínez-Ruiz M. Microalgae-Based Biotechnology as Alternative Biofertilizers for Soil Enhancement and Carbon Footprint Reduction: Advantages and Implications. Mar Drugs 2023; 21:md21020093. [PMID: 36827134 PMCID: PMC9958754 DOI: 10.3390/md21020093] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2022] [Revised: 01/21/2023] [Accepted: 01/21/2023] [Indexed: 02/01/2023] Open
Abstract
Due to the constant growth of the human population and anthropological activity, it has become necessary to use sustainable and affordable technologies that satisfy the current and future demand for agricultural products. Since the nutrients available to plants in the soil are limited and the need to increase the yields of the crops is desirable, the use of chemical (inorganic or NPK) fertilizers has been widespread over the last decades, causing a nutrient shortage due to their misuse and exploitation, and because of the uncontrolled use of these products, there has been a latent environmental and health problem globally. For this reason, green biotechnology based on the use of microalgae biomass is proposed as a sustainable alternative for development and use as soil improvers for crop cultivation and phytoremediation. This review explores the long-term risks of using chemical fertilizers for both human health (cancer and hypoxia) and the environment (eutrophication and erosion), as well as the potential of microalgae biomass to substitute current fertilizer using different treatments on the biomass and their application methods for the implementation on the soil; additionally, the biomass can be a source of carbon mitigation and wastewater treatment in agro-industrial processes.
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Affiliation(s)
| | | | | | - Diana Ramírez-Gamboa
- Tecnologico de Monterrey, School of Engineering and Sciences, Monterrey 64849, Mexico
| | | | | | - Ma. Dolores Castañeda-Antonio
- Centro de Investigaciones en Ciencias Microbiológicas del Instituto de Ciencias, Benemérita Universidad Autónoma de Puebla, Puebla 72490, Mexico
| | - Karina G. Coronado-Apodaca
- Tecnologico de Monterrey, School of Engineering and Sciences, Monterrey 64849, Mexico
- Tecnologico de Monterrey, Institute of Advanced Materials for Sustainable Manufacturing, Monterrey 64849, Mexico
| | - Rafael Gomes Araújo
- Tecnologico de Monterrey, School of Engineering and Sciences, Monterrey 64849, Mexico
- Tecnologico de Monterrey, Institute of Advanced Materials for Sustainable Manufacturing, Monterrey 64849, Mexico
| | - Juan Eduardo Sosa-Hernández
- Tecnologico de Monterrey, School of Engineering and Sciences, Monterrey 64849, Mexico
- Tecnologico de Monterrey, Institute of Advanced Materials for Sustainable Manufacturing, Monterrey 64849, Mexico
| | - Elda M. Melchor-Martínez
- Tecnologico de Monterrey, School of Engineering and Sciences, Monterrey 64849, Mexico
- Tecnologico de Monterrey, Institute of Advanced Materials for Sustainable Manufacturing, Monterrey 64849, Mexico
| | - Hafiz M. N. Iqbal
- Tecnologico de Monterrey, School of Engineering and Sciences, Monterrey 64849, Mexico
- Tecnologico de Monterrey, Institute of Advanced Materials for Sustainable Manufacturing, Monterrey 64849, Mexico
| | - Roberto Parra-Saldivar
- Tecnologico de Monterrey, School of Engineering and Sciences, Monterrey 64849, Mexico
- Tecnologico de Monterrey, Institute of Advanced Materials for Sustainable Manufacturing, Monterrey 64849, Mexico
- Correspondence: (R.P.-S.); (M.M.-R.)
| | - Manuel Martínez-Ruiz
- Tecnologico de Monterrey, School of Engineering and Sciences, Monterrey 64849, Mexico
- Tecnologico de Monterrey, Institute of Advanced Materials for Sustainable Manufacturing, Monterrey 64849, Mexico
- Correspondence: (R.P.-S.); (M.M.-R.)
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13
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Lu Q, Xiao Y, Wu P. Emerging technologies of employing algae and microorganisms to promote the return-to-field of crop straws: A mini-review. Front Bioeng Biotechnol 2023; 11:1152778. [PMID: 37064245 PMCID: PMC10097884 DOI: 10.3389/fbioe.2023.1152778] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2023] [Accepted: 03/16/2023] [Indexed: 04/18/2023] Open
Abstract
As an agricultural waste, crop straw enriched with a variety of nutrients is regarded as an important fertilizer resource. In the past, crop straw return-to-field played a key role in the sustainability of agricultural environment, but some problems, such as ammonia loss in ammoniation, low rate of straw decomposition, and high carbon footprint, attracted researchers' attentions. In this paper, we propose three technical routes, including cyanobacteria-based ammonia assimilation, microorganisms-based crop straw pretreatment, and microalgae-based carbon capture, to address the aforementioned problems. Besides, challenges which may hinder the practical application of these technical routes as well as the potential solutions are discussed in detail. It is expected that this paper could provide new ideas to the practical application of crop straw return-to-field.
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Affiliation(s)
- Qian Lu
- School of Grain Science and Technology, Jiangsu University of Science and Technology, Zhenjiang, China
- *Correspondence: Qian Lu, ; Yu Xiao,
| | - Yu Xiao
- School of Grain Science and Technology, Jiangsu University of Science and Technology, Zhenjiang, China
- *Correspondence: Qian Lu, ; Yu Xiao,
| | - Pengfei Wu
- College of Forestry, Nanjing Forestry University, Nanjing, China
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14
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Yu Q, Pei X, Wei Y, Naveed S, Wang S, Chang M, Zhang C, Ge Y. The roles of bacteria in resource recovery, wastewater treatment and carbon fixation by microalgae-bacteria consortia: A critical review. ALGAL RES 2022. [DOI: 10.1016/j.algal.2022.102938] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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15
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Li KT, Peng SY, Zhang B, Peng WF, Yu SJ, Cheng X. Exopolysaccharides from Lactobacillus plantarum reduces cadmium uptake and mitigates cadmium toxicity in rice seedlings. World J Microbiol Biotechnol 2022; 38:243. [DOI: 10.1007/s11274-022-03435-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2022] [Accepted: 10/07/2022] [Indexed: 10/31/2022]
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16
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Rolli E, Marasco R, Fusi M, Scaglia B, Schubotz F, Mapelli F, Ciccazzo S, Brusetti L, Trombino L, Tambone F, Adani F, Borin S, Daffonchio D. Environmental micro-niche filtering shapes bacterial pioneer communities during primary colonization of a Himalayas' glacier forefield. Environ Microbiol 2022; 24:5998-6016. [PMID: 36325730 PMCID: PMC10099744 DOI: 10.1111/1462-2920.16268] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2022] [Accepted: 10/27/2022] [Indexed: 11/06/2022]
Abstract
The pedogenesis from the mineral substrate released upon glacier melting has been explained with the succession of consortia of pioneer microorganisms, whose structure and functionality are determined by the environmental conditions developing in the moraine. However, the microbiome variability that can be expected in the environmentally heterogeneous niches occurring in a moraine at a given successional stage is poorly investigated. In a 50 m2 area in the forefield of the Lobuche glacier (Himalayas, 5050 m above sea level), we studied six sites of primary colonization presenting different topographical features (orientation, elevation and slope) and harbouring greyish/dark biological soil crusts (BSCs). The spatial vicinity of the sites opposed to their topographical differences, allowed us to examine the effect of environmental conditions independently from the time of deglaciation. The bacterial microbiome diversity and their co-occurrence network, the bacterial metabolisms predicted from 16S rRNA gene high-throughput sequencing, and the microbiome intact polar lipids were investigated in the BSCs and the underlying sediment deep layers (DLs). Different bacterial microbiomes inhabited the BSCs and the DLs, and their composition varied among sites, indicating a niche-specific role of the micro-environmental conditions in the bacterial communities' assembly. In the heterogeneous sediments of glacier moraines, physico-chemical and micro-climatic variations at the site-spatial scale are crucial in shaping the microbiome microvariability and structuring the pioneer bacterial communities during pedogenesis.
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Affiliation(s)
- Eleonora Rolli
- Department of Food, Environmental and Nutritional Sciences, University of Milan, Milan, Italy
| | - Ramona Marasco
- Biological and Environmental Sciences and Engineering Division, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia
| | - Marco Fusi
- Biological and Environmental Sciences and Engineering Division, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.,Centre for Conservation and Restoration Science, Edinburgh Napier University, Edinburgh, UK
| | - Barbara Scaglia
- Department of Agricultural and Environmental Sciences-Production, Landscape, Agroenergy-Gruppo Ricicla Lab, University of Milan, Milan, Italy
| | - Florence Schubotz
- MARUM, Center for Marine Environmental Sciences, University of Bremen, Bremen, Germany
| | - Francesca Mapelli
- Department of Food, Environmental and Nutritional Sciences, University of Milan, Milan, Italy
| | - Sonia Ciccazzo
- Faculty of Science and Technology, Free University of Bolzano, Bolzano, Italy
| | - Lorenzo Brusetti
- Faculty of Science and Technology, Free University of Bolzano, Bolzano, Italy
| | - Luca Trombino
- Department of Earth Sciences 'Ardito Desio', University of Milan, Milan, Italy
| | - Fulvia Tambone
- Department of Agricultural and Environmental Sciences-Production, Landscape, Agroenergy-Gruppo Ricicla Lab, University of Milan, Milan, Italy
| | - Fabrizio Adani
- Department of Agricultural and Environmental Sciences-Production, Landscape, Agroenergy-Gruppo Ricicla Lab, University of Milan, Milan, Italy
| | - Sara Borin
- Department of Food, Environmental and Nutritional Sciences, University of Milan, Milan, Italy
| | - Daniele Daffonchio
- Biological and Environmental Sciences and Engineering Division, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia
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17
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Toribio AJ, Suárez-Estrella F, Jurado MM, López-González JA, Martínez-Gallardo MR, López MJ. Design and validation of cyanobacteria-rhizobacteria consortia for tomato seedlings growth promotion. Sci Rep 2022; 12:13150. [PMID: 35909166 PMCID: PMC9339543 DOI: 10.1038/s41598-022-17547-8] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2022] [Accepted: 07/27/2022] [Indexed: 11/11/2022] Open
Abstract
The use of rhizobacteria provide great benefits in terms of nitrogen supply, suppression of plant diseases, or production of vitamins and phytohormones that stimulate the plant growth. At the same time, cyanobacteria can photosynthesize, fix nitrogen, synthesize substances that stimulate rhizogenesis, plant aerial growth, or even suppose an extra supply of carbon usable by heterotrophic bacteria, as well as act as biological control agents, give them an enormous value as plant growth promoters. The present study focused on the in vitro establishment of consortia using heterotrophic bacteria and cyanobacteria and the determination of their effectiveness in the development of tomato seedlings. Microbial collection was composed of 3 cyanobacteria (SAB-M612 and SAB-B866 belonging to Nostocaceae Family) and GS (unidentified cyanobacterium) and two phosphate and potassium solubilizing heterotrophic bacteria (Pseudomonas putida-BIO175 and Pantoea cypripedii-BIO175). The results revealed the influence of the culture medium, incubation time and the microbial components of each consortium in determining their success as biofertilizers. In this work, the most compatible consortia were obtained by combining the SAB-B866 and GS cyanobacteria with either of the two heterotrophic bacteria. Cyanobacteria GS promoted the growth of both rhizobacteria in vitro (increasing logarithmic units when they grew together). While Cyanobacteria SAB-B866 together with both rhizobacteria stimulated the growth of tomato seedlings in planta, leading to greater aerial development of the treated seedlings. Parameters such as fresh weight and stem diameter stood out in the plants treated with the consortia (SAB-B866 and both bacteria) compared to the untreated plants, where the values doubled. However, the increase was more discrete for the parameters stem length and number of leaves. These results suggest that the artificial formulation of microbial consortia can have positive synergistic effects on plant growth, which is of enormous agro-biotechnological interest.
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Affiliation(s)
- A J Toribio
- Department of Biology and Geology, CITE II-B, University of Almería, Agrifood Campus of International Excellence, ceiA3, CIAIMBITAL, 04120, Almeria, Spain.
| | - F Suárez-Estrella
- Department of Biology and Geology, CITE II-B, University of Almería, Agrifood Campus of International Excellence, ceiA3, CIAIMBITAL, 04120, Almeria, Spain
| | - M M Jurado
- Department of Biology and Geology, CITE II-B, University of Almería, Agrifood Campus of International Excellence, ceiA3, CIAIMBITAL, 04120, Almeria, Spain
| | - J A López-González
- Department of Biology and Geology, CITE II-B, University of Almería, Agrifood Campus of International Excellence, ceiA3, CIAIMBITAL, 04120, Almeria, Spain
| | - M R Martínez-Gallardo
- Department of Biology and Geology, CITE II-B, University of Almería, Agrifood Campus of International Excellence, ceiA3, CIAIMBITAL, 04120, Almeria, Spain
| | - M J López
- Department of Biology and Geology, CITE II-B, University of Almería, Agrifood Campus of International Excellence, ceiA3, CIAIMBITAL, 04120, Almeria, Spain
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18
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A Multi-Analytical Approach to Infer Mineral–Microbial Interactions Applied to Petroglyph Sites in the Negev Desert of Israel. APPLIED SCIENCES-BASEL 2022. [DOI: 10.3390/app12146936] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Petroglyph sites exist all over the world. They are one of the earliest forms of mankind’s expression and a precursor to art. Despite their outstanding value, comprehensive research on conservation and preservation of rock art is minimal, especially as related to biodeterioration. For this reason, the main objective of this study was to explore the factors involved in the degradation of petroglyph sites in the Negev desert of Israel, with a focus on biodegradation processes. Through the use of culture-independent microbiological methods (metagenomics), we characterized the microbiomes of the samples, finding they were dominated by bacterial communities, in particular taxa of Actinobacteria and Cyanobacteria, with resistance to radiation and desiccation. By means of XRF and Raman spectroscopies, we defined the composition of the stone (calcite and quartz) and the dark crust (clay minerals with Mn and Fe oxides), unveiling the presence of carotenoids, indicative of biological colonization. Optical microscopy and SEM–EDX analyses on thin sections highlighted patterns of weathering, possibly connected to the presence of biodeteriorative microorganisms that leach the calcareous matrix from the bedrock and mobilize metal cations from the black varnish for metabolic processes, slowly weathering it.
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19
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Employment of algae-based biological soil crust to control desertification for the sustainable development: A mini-review. ALGAL RES 2022. [DOI: 10.1016/j.algal.2022.102747] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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20
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Co-culturing of microalgae and bacteria in real wastewaters alters indigenous bacterial communities enhancing effluent bioremediation. ALGAL RES 2022. [DOI: 10.1016/j.algal.2022.102705] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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21
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Perera IA, Abinandan S, Subashchandrabose SR, Venkateswarlu K, Naidu R, Megharaj M. Impact of Nitrate and Ammonium Concentrations on Co-Culturing of Tetradesmus obliquus IS2 with Variovorax paradoxus IS1 as Revealed by Phenotypic Responses. MICROBIAL ECOLOGY 2022; 83:951-959. [PMID: 34363515 DOI: 10.1007/s00248-021-01832-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/26/2021] [Accepted: 07/27/2021] [Indexed: 06/13/2023]
Abstract
Mutual interactions in co-cultures of microalgae and bacteria are well known for establishing consortia and nutrient uptake in aquatic habitats, but the phenotypic changes in terms of morphological, physiological, and biochemical attributes that drive these interactions have not been clearly understood. In this novel study, we demonstrated the phenotypic response in a co-culture involving a microalga, Tetradesmus obliquus IS2, and a bacterium, Variovorax paradoxus IS1, grown with varying concentrations of two inorganic nitrogen sources. Modified Bold's basal medium was supplemented with five ratios (%) of NO3-N:NH4-N (100:0, 75:25, 50:50, 25:75, and 0:100), and by maintaining N:P Redfield ratio of 16:1. The observed morphological changes in microalga included an increase in granularity and a broad range of cell sizes under the influence of increased ammonium levels. Co-culturing in presence of NO3-N alone or combination with NH4-N up to equimolar concentrations resulted in complete nitrogen uptake, increased growth in both the microbial strains, and enhanced accumulation of carbohydrates, proteins, and lipids. Total chlorophyll content in microalga was also significantly higher when it was grown as a co-culture with NO3-N and NH4-N up to a ratio of 50:50. Significant upregulation in the synthesis of amino acids and sugars and downregulation of organic acids were evident with higher ammonium uptake in the co-culture, indicating the regulation of carbon and nitrogen assimilation pathways and energy synthesis. Our data suggest that the co-culture of strains IS1 and IS2 could be exploited for effluent treatment by considering the concentrations of inorganic sources, particularly ammonium, in the wastewaters.
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Affiliation(s)
- Isiri Adhiwarie Perera
- Global Centre for, Environmental Remediation (GCER), School of Engineering, Science and Environment, The University of Newcastle, ATC Building, University Drive, NSW, 2308, Callaghan, Australia
| | - Sudharsanam Abinandan
- Global Centre for, Environmental Remediation (GCER), School of Engineering, Science and Environment, The University of Newcastle, ATC Building, University Drive, NSW, 2308, Callaghan, Australia
- Cooperative Research Centre for Contamination Assessment and Remediation of Environment (CRC CARE), The University of Newcastle, ATC Building, University Drive, Callaghan, NSW, 2308, Australia
| | - Suresh R Subashchandrabose
- Global Centre for, Environmental Remediation (GCER), School of Engineering, Science and Environment, The University of Newcastle, ATC Building, University Drive, NSW, 2308, Callaghan, Australia
| | - Kadiyala Venkateswarlu
- Formerly Department of Microbiology, Sri Krishnadevaraya University, Anantapuramu, 515003, Andhra Pradesh, India
| | - Ravi Naidu
- Global Centre for, Environmental Remediation (GCER), School of Engineering, Science and Environment, The University of Newcastle, ATC Building, University Drive, NSW, 2308, Callaghan, Australia
- Cooperative Research Centre for Contamination Assessment and Remediation of Environment (CRC CARE), The University of Newcastle, ATC Building, University Drive, Callaghan, NSW, 2308, Australia
| | - Mallavarapu Megharaj
- Global Centre for, Environmental Remediation (GCER), School of Engineering, Science and Environment, The University of Newcastle, ATC Building, University Drive, NSW, 2308, Callaghan, Australia.
- Cooperative Research Centre for Contamination Assessment and Remediation of Environment (CRC CARE), The University of Newcastle, ATC Building, University Drive, Callaghan, NSW, 2308, Australia.
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Perera IA, Abinandan S, Subashchandrabose SR, Venkateswarlu K, Cole N, Naidu R, Megharaj M. Extracellular Polymeric Substances Drive Symbiotic Interactions in Bacterial‒Microalgal Consortia. MICROBIAL ECOLOGY 2022; 83:596-607. [PMID: 34132846 DOI: 10.1007/s00248-021-01772-1] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2021] [Accepted: 05/10/2021] [Indexed: 06/12/2023]
Abstract
The importance of several factors that drive the symbiotic interactions between bacteria and microalgae in consortia has been well realised. However, the implication of extracellular polymeric substances (EPS) released by the partners remains unclear. Therefore, the present study focused on the influence of EPS in developing consortia of a bacterium, Variovorax paradoxus IS1, with a microalga, Tetradesmus obliquus IS2 or Coelastrella sp. IS3, all isolated from poultry slaughterhouse wastewater. The bacterium increased the specific growth rates of microalgal species significantly in the consortia by enhancing the uptake of nitrate (88‒99%) and phosphate (92‒95%) besides accumulating higher amounts of carbohydrates and proteins. The EPS obtained from exudates, collected from the bacterial or microalgal cultures, contained numerous phytohormones, vitamins, polysaccharides and amino acids that are likely involved in interspecies interactions. The addition of EPS obtained from V. paradoxus IS1 to the culture medium doubled the growth of both the microalgal strains. The EPS collected from T. obliquus IS2 significantly increased the growth of V. paradoxus IS1, but there was no apparent change in bacterial growth when it was cultured in the presence of EPS from Coelastrella sp. IS3. These observations indicate that the interaction between V. paradoxus IS1 and T. obliquus IS2 was mutualism, while commensalism was the interaction between the bacterial strain and Coelastrella sp. IS3. Our present findings thus, for the first time, unveil the EPS-induced symbiotic interactions among the partners involved in bacterial‒microalgal consortia.
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Affiliation(s)
- Isiri Adhiwarie Perera
- Global Centre for Environmental Remediation (GCER), College of Engineering, Science and Environment, The University of Newcastle, ATC Building, University Drive, Callaghan, NSW, 2308, Australia
| | - Sudharsanam Abinandan
- Global Centre for Environmental Remediation (GCER), College of Engineering, Science and Environment, The University of Newcastle, ATC Building, University Drive, Callaghan, NSW, 2308, Australia
- Cooperative Research Centre for Contamination Assessment and Remediation of Environment (CRC CARE), The University of Newcastle, ATC Building, Callaghan, NSW, 2308, Australia
| | - Suresh R Subashchandrabose
- Global Centre for Environmental Remediation (GCER), College of Engineering, Science and Environment, The University of Newcastle, ATC Building, University Drive, Callaghan, NSW, 2308, Australia
- Cooperative Research Centre for Contamination Assessment and Remediation of Environment (CRC CARE), The University of Newcastle, ATC Building, Callaghan, NSW, 2308, Australia
| | - Kadiyala Venkateswarlu
- Formerly Department of Microbiology, Sri Krishnadevaraya University, Anantapuramu, 515003, India
| | - Nicole Cole
- Analytical and Biomolecular Research Facility (ABRF), The University of Newcastle, Callaghan, NSW, 2308, Australia
| | - Ravi Naidu
- Global Centre for Environmental Remediation (GCER), College of Engineering, Science and Environment, The University of Newcastle, ATC Building, University Drive, Callaghan, NSW, 2308, Australia
- Cooperative Research Centre for Contamination Assessment and Remediation of Environment (CRC CARE), The University of Newcastle, ATC Building, Callaghan, NSW, 2308, Australia
| | - Mallavarapu Megharaj
- Global Centre for Environmental Remediation (GCER), College of Engineering, Science and Environment, The University of Newcastle, ATC Building, University Drive, Callaghan, NSW, 2308, Australia.
- Cooperative Research Centre for Contamination Assessment and Remediation of Environment (CRC CARE), The University of Newcastle, ATC Building, Callaghan, NSW, 2308, Australia.
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23
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Dong K, Yu Z, Kerfahi D, Lee SS, Li N, Yang T, Adams JM. Soil microbial co-occurrence networks become less connected with soil development in a high Arctic glacier foreland succession. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 813:152565. [PMID: 34953844 DOI: 10.1016/j.scitotenv.2021.152565] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/18/2021] [Revised: 11/30/2021] [Accepted: 12/16/2021] [Indexed: 06/14/2023]
Abstract
Classically, ecologists have considered that biota becomes more integrated and interdependent with ecosystem development in primary successional environments. However, recent work on soil microbial communities suggests that there may in fact be no change in network integration over successional time series. Here, we performed a test of this principle by identifying network-level topological features of the soil microbial co-occurrence networks in the primary successional foreland environment of the retreating high-Arctic glacier of Midtre Lovénbreen, Svalbard. Soil was sampled at sites along the foreland of inferred ages 10-90 years since deglaciation. DNA was extracted and amplicon sequenced for 16 s rRNA genes for bacteria and ITS1 region for fungi. Despite the chronologically-related soil pH decline and organic C/N accumulation, analysis on network-level topological features showed network integration did not change with inferred chronological ages, whereas network integration declined with decreasing pH and increasing total organic carbon (TOC) - both factors that can be viewed as an indicator of soil development. We also found that bacteria played a greater role in the network structure than fungi, with all keystone species in the microbial co-occurrence network being bacteria species. Both number and relative abundance of the keystone species were significantly higher when soil pH increased or TOC decreased. It appears that in the more extreme and less productive conditions of early primary succession, integration between members of soil biota into consortia may play a greater role in niche adaptation and survival. Our finding also emphasizes that ecosystem development is not simply a product of time but is influenced by locally heterogeneous factors.
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Affiliation(s)
- Ke Dong
- Life Science Major, Kyonggi University, Suwon, South Korea
| | - Zhi Yu
- College of Biotechnology and Bioengineering, Sungkyunkwan University, Suwon, South Korea
| | - Dorsaf Kerfahi
- School of Natural Sciences, Department of Biological Sciences, Keimyung University, Daegu, South Korea
| | - Sang-Seob Lee
- College of Biotechnology and Bioengineering, Sungkyunkwan University, Suwon, South Korea
| | - Nan Li
- Key laboratory of Ministry of Education for Environment Change and Resources Use in Beibu Gulf, Nanning Normal University, Nanning, China
| | - Teng Yang
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China; University of Chinese Academy of Sciences, Beijing, China
| | - Jonathan M Adams
- School of Geographic and Oceanographic Sciences, Nanjing University, Nanjing, China.
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24
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van den Berg TE, Croce R. The Loroxanthin Cycle: A New Type of Xanthophyll Cycle in Green Algae (Chlorophyta). FRONTIERS IN PLANT SCIENCE 2022; 13:797294. [PMID: 35251077 PMCID: PMC8891138 DOI: 10.3389/fpls.2022.797294] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/18/2021] [Accepted: 01/18/2022] [Indexed: 06/14/2023]
Abstract
Xanthophyll cycles (XC) have proven to be major contributors to photoacclimation for many organisms. This work describes a light-driven XC operating in the chlorophyte Chlamydomonas reinhardtii and involving the xanthophylls Lutein (L) and Loroxanthin (Lo). Pigments were quantified during a switch from high to low light (LL) and at different time points from cells grown in Day/Night cycle. Trimeric LHCII was purified from cells acclimated to high or LL and their pigment content and spectroscopic properties were characterized. The Lo/(L + Lo) ratio in the cells varies by a factor of 10 between cells grown in low or high light (HL) leading to a change in the Lo/(L + Lo) ratio in trimeric LHCII from .5 in low light to .07 in HL. Trimeric LhcbMs binding Loroxanthin have 5 ± 1% higher excitation energy (EE) transfer (EET) from carotenoid to Chlorophyll as well as higher thermo- and photostability than trimeric LhcbMs that only bind Lutein. The Loroxanthin cycle operates on long time scales (hours to days) and likely evolved as a shade adaptation. It has many similarities with the Lutein-epoxide - Lutein cycle (LLx) of plants.
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25
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Bui-Xuan D, Tang DYY, Chew KW, Nguyen TDP, Le Ho H, Tran TNT, Nguyen-Sy T, Dinh THT, Nguyen PS, Dinh TMH, Nguyen TT, Show PL. Green biorefinery: Microalgae-bacteria microbiome on tolerance investigations in plants. J Biotechnol 2022; 343:120-127. [PMID: 34896159 DOI: 10.1016/j.jbiotec.2021.12.002] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2021] [Revised: 10/23/2021] [Accepted: 12/05/2021] [Indexed: 12/29/2022]
Abstract
Co-culture of microalgae and microorganisms, supported with the resulting synergistic effects, can be used for wastewater treatment, biomass production, agricultural applications and etc. Therefore, this study aimed to explore the role of Bacillus subtilis (B. subtilis) in tolerance against the harsh environment of seafood wastewater, at which these microalgal-bacterial flocs were formed by microalgae cultivation. In this present study, B. subtilis isolated from the cultivation medium of Chlorella vulgaris and exposed to different salinity (0.1-4% w/v sodium chloride) and various pH range to determine the tolerant ability and biofilm formation. Interestingly, this bacteria strain that isolated from microalgae cultivation medium showed the intense viability in the salt concentration exceeding up to 4% (w/v) NaCl but demonstrated the decrease in cell division as environmental culture undergoing over pH 10. Cell viability was recorded higher than 71% and 92% for B. subtilis inoculum in media with salt concentration greater than 20 gL-1 and external pH 6.5-9, respectively. This showed that B. subtilis isolated from microalgal-bacteria cocultivation exhibited its tolerant ability to survive in the extremely harsh conditions and thus, mitigating the stresses due to salinity and pH.
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Affiliation(s)
- Dong Bui-Xuan
- The University of Danang, University of Science and Technology, 54 Nguyen Luong Bang St., Danang 550 000, Viet Nam
| | - Doris Ying Ying Tang
- Department of Chemical and Environmental Engineering, Faculty of Science and Engineering, University of Nottingham Malaysia, Jalan Broga, 43500 Semenyih, Selangor Darul Ehsan, Malaysia
| | - Kit Wayne Chew
- School of Energy and Chemical Engineering, Xiamen University Malaysia, Jalan Sunsuria, Bandar Sunsuria, 43900 Sepang, Selangor Darul Ehsan, Malaysia; College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, Fujian, China.
| | - Thi Dong Phuong Nguyen
- The University of Danang, University of Technology and Education, 48 Cao Thang St., Danang 550 000, Viet Nam.
| | - Han Le Ho
- Biological Resource Center/Korean Collection for Type Cultures (KCTC), Korea Research Institute of Bioscience and Biotechnology, Jeonbuk 56212, Republic of Korea; University of Science and Technology (UST), Daejeon 34113, Republic of Korea
| | - Thi Ngoc Thu Tran
- The University of Danang, University of Technology and Education, 48 Cao Thang St., Danang 550 000, Viet Nam
| | - Toan Nguyen-Sy
- The University of Danang, University of Technology and Education, 48 Cao Thang St., Danang 550 000, Viet Nam
| | - Thi Ha Thuong Dinh
- The University of Danang, University of Science and Education, 459 Ton Duc Thang St., Danang 550 000, Viet Nam
| | - Phuc Son Nguyen
- The University of Danang, University of Technology and Education, 48 Cao Thang St., Danang 550 000, Viet Nam
| | - Thi My Huong Dinh
- The University of Danang, University of Technology and Education, 48 Cao Thang St., Danang 550 000, Viet Nam
| | - Thanh Thuy Nguyen
- National Institute of Hygiene and Epidemiology, 01 Yecxanh St, Hanoi, Viet Nam
| | - Pau Loke Show
- Department of Chemical and Environmental Engineering, Faculty of Science and Engineering, University of Nottingham Malaysia, Jalan Broga, 43500 Semenyih, Selangor Darul Ehsan, Malaysia
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Qi F, Jia Y, Mu R, Ma G, Guo Q, Meng Q, Yu G, Xie J. Convergent community structure of algal-bacterial consortia and its effects on advanced wastewater treatment and biomass production. Sci Rep 2021; 11:21118. [PMID: 34702904 PMCID: PMC8548336 DOI: 10.1038/s41598-021-00517-x] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2021] [Accepted: 10/06/2021] [Indexed: 11/08/2022] Open
Abstract
Microalgal-bacterial consortium is an effective way to meet increasingly stringent standards in wastewater treatment. However, the mechanism of wastewater removal effect has not been properly explained in community structure by phycosphere. And little is known about that the concept of macroecology was introduced into phycosphere to explain the phenomenon. In the study, the algal-bacterial consortia with different ratios of algae and sludge were cultured in same aerobic wastewater within 48 h in photobioreactors (PSBRs). Community structure at start and end was texted by metagenomic analysis. Bray-Curtis similarities analysis based on microbial community showed that there was obvious convergent succession in all consortia, which is well known as "convergence" in macroecology. The result showed that Bray-Curtis similarities at End (overall above 0.88) were higher than these at Start (almost less than 0.66). In terms of community structure, the consortium with 5:1 ratio at Start are the more similar with the consortia at End by which the maximum removal of total dissolved nitrogen (TDN, 73.69%), total dissolved phosphorus (TDP, 94.40%) and NH3-N (93.26%) in wastewater treatment process and biomass production (98.2%) higher than other consortia, according with climax community in macroecology with the highest resource utilization than other communities. Therefore, the macroecology can be introduced into phycosphere to explain the consortium for advanced wastewater treatment and optimization community structure. And the study revealed a novel insight into treatment effect and community structure of algal-bacterial consortia for advanced wastewater treatment, a new idea for to shortening the culture time of consortium and optimize predicting their ecological community structure and predicting ecological community.
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Affiliation(s)
- Feng Qi
- School of Municipal and Environmental Engineering, Shandong Jianzhu University, Jinan, 250101, China
| | - Yantian Jia
- School of Municipal and Environmental Engineering, Shandong Jianzhu University, Jinan, 250101, China
| | - Ruimin Mu
- School of Municipal and Environmental Engineering, Shandong Jianzhu University, Jinan, 250101, China.
| | - Guixia Ma
- School of Municipal and Environmental Engineering, Shandong Jianzhu University, Jinan, 250101, China
| | - Qingyang Guo
- School of Municipal and Environmental Engineering, Shandong Jianzhu University, Jinan, 250101, China
| | - Qianya Meng
- School of Municipal and Environmental Engineering, Shandong Jianzhu University, Jinan, 250101, China
| | - Gejiang Yu
- School of Municipal and Environmental Engineering, Shandong Jianzhu University, Jinan, 250101, China
| | - Jun Xie
- Shandong Provincial Eco-Environment Monitoring Center, Jinan, China
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27
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Montero O, Velasco M, Miñón J, Marks EAN, Sanz-Arranz A, Rad C. Differential Membrane Lipid Profiles and Vibrational Spectra of Three Edaphic Algae and One Cyanobacterium. Int J Mol Sci 2021; 22:11277. [PMID: 34681936 PMCID: PMC8538821 DOI: 10.3390/ijms222011277] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2021] [Revised: 10/17/2021] [Accepted: 10/18/2021] [Indexed: 11/25/2022] Open
Abstract
The membrane glycerolipids of four phototrophs that were isolated from an edaphic assemblage were determined by UPLC-MS after cultivation in a laboratory growth chamber. Identification was carried out by 18S and 16S rDNA sequencing. The algal species were Klebsormidium flaccidum (Charophyta), Oocystis sp. (Chlorophyta), and Haslea spicula (Bacillariophyta), and the cyanobacterium was Microcoleus vaginatus (Cyanobacteria). The glycerolipid profile of Oocystis sp. was dominated by monogalactosyldiacylglycerol (MGDG) species, with MGDG(18:3/16:4) accounting for 68.6%, whereas MGDG(18:3/16:3) was the most abundant glycerolipid in K. flaccidum (50.1%). A ratio of digalactosyldiacylglycerol (DGDG) species to MGDG species (DGDG/MGDG) was shown to be higher in K. flaccidum (0.26) than in Oocystis sp. (0.14). This ratio increased under high light (HL) as compared to low light (LL) in all the organisms, with its highest value being shown in cyanobacterium (0.38-0.58, LL-HL). High contents of eicosapentaenoic acid (EPA, C20:5) and hexadecenoic acid were observed in the glycerolipids of H. spicula. Similar Fourier transform infrared (FTIR) and Raman spectra were found for K. flaccidum and Oocystis sp. Specific bands at 1629.06 and 1582.78 cm-1 were shown by M. vaginatus in the Raman spectra. Conversely, specific bands in the FTIR spectrum were observed for H. spicula at 1143 and 1744 cm-1. The results of this study point out differences in the membrane lipid composition between species, which likely reflects their different morphology and evolutionary patterns.
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Affiliation(s)
- Olimpio Montero
- Institute of Biology and Molecular Genetics (IBGM), Spanish Council for Scientific Research (CSIC), Sanz y Forés Str. 3, 47003 Valladolid, Spain;
| | - Marta Velasco
- Institute of Biology and Molecular Genetics (IBGM), Spanish Council for Scientific Research (CSIC), Sanz y Forés Str. 3, 47003 Valladolid, Spain;
| | - Jorge Miñón
- Composting Research Group UBUCOMP, Faculty of Sciences, University of Burgos, 09001 Burgos, Spain; (J.M.); (C.R.)
| | - Evan A. N. Marks
- BETA Technological Center, University of Vic-University of Central Catalonia, Edifici Can Baumann, Crta. de Roda 70, 08500 Vic, Spain;
| | - Aurelio Sanz-Arranz
- Department of Fisica de la Materia Condensada, University of Valladolid, 47002 Valladolid, Spain;
| | - Carlos Rad
- Composting Research Group UBUCOMP, Faculty of Sciences, University of Burgos, 09001 Burgos, Spain; (J.M.); (C.R.)
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28
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Microalgae–Bacteria Consortia: A Review on the Degradation of Polycyclic Aromatic Hydrocarbons (PAHs). ARABIAN JOURNAL FOR SCIENCE AND ENGINEERING 2021. [DOI: 10.1007/s13369-021-06236-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
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29
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Elalami D, Oukarroum A, Barakat A. Anaerobic digestion and agronomic applications of microalgae for its sustainable valorization. RSC Adv 2021; 11:26444-26462. [PMID: 35480019 PMCID: PMC9037636 DOI: 10.1039/d1ra04845g] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2021] [Accepted: 07/20/2021] [Indexed: 11/21/2022] Open
Abstract
Microalgae are considered potential candidates in biorefinery processes, and due to their biochemical properties, they can be used in the production of biofuels such as biogas, as well as for bioremediation of liquid effluents. The objective of this review is to study the current status of microalgae anaerobic digestion and agricultural uses (as bio-stimulants and biofertilizers), starting from microalgae cultivation. Indeed, the efficiency of these processes necessarily depends on the evaluation of different biotic and abiotic factors that affect the growth of microalgae. However, the adaptation and the optimization of process parameters on a large scale is also limited by energy and economic constraints. Moreover, the integration of biogas production processes with microalgae cultivation allows a nutrients and CO2 virtuous loop, thus promoting the sustainability of the process. Finally, this paper provides a general overview of biogas and biofertilizers production combination, as well as the related challenges and recommended future research perspectives to complement the gap in the literature.
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Affiliation(s)
- Doha Elalami
- AgroBioSciences, Mohammed VI Polytechnic University (UM6P) Ben Guérir Morocco
| | - Abdallah Oukarroum
- AgroBioSciences, Mohammed VI Polytechnic University (UM6P) Ben Guérir Morocco
| | - Abdellatif Barakat
- AgroBioSciences, Mohammed VI Polytechnic University (UM6P) Ben Guérir Morocco
- IATE, University of Montpellier, INRAE, Agro Institut Montpellier 34060 France
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30
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Mu R, Jia Y, Ma G, Liu L, Hao K, Qi F, Shao Y. Advances in the use of microalgal-bacterial consortia for wastewater treatment: Community structures, interactions, economic resource reclamation, and study techniques. WATER ENVIRONMENT RESEARCH : A RESEARCH PUBLICATION OF THE WATER ENVIRONMENT FEDERATION 2021; 93:1217-1230. [PMID: 33305497 DOI: 10.1002/wer.1496] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/22/2020] [Revised: 11/12/2020] [Accepted: 12/06/2020] [Indexed: 06/12/2023]
Abstract
The rise in living standards has generated a demand for higher aquatic environmental quality. The microalgal community and the surrounding organic molecules, environmental factors, and microorganisms, such as bacteria, are together defined as the phycosphere. The bacteria in the phycosphere can form consortia with microalgae through various forms of interaction. The study of the species in these consortia and their relative proportions is of great significance in determining the species and strains of stable algae that can be used in sewage treatment. This article summarizes the following topics: the interactions between microalgae and bacteria that are required to establish consortia; how symbiosis between algae and bacteria is established; microalgal competition with bacteria through inhibition and anti-inhibition strategies; the influence of environmental factors on microalgal-bacterial aggregates, such as illumination conditions, pH, dissolved oxygen, temperature, and nutrient levels; the application of algal-bacterial aggregates to enhance biomass production and nutrient reuse; and techniques for studying the community structure and interactions of algal-bacterial consortia, such as microscopy, flow cytometry, and omics. PRACTITIONER POINTS: Community structures in microalgal-bacterial consortia in wastewater treatment. Interactions between algae and bacteria in wastewater treatment. Effects of ecological factors on the algal-bacterial community in wastewater treatment. Economically recycling resources from algal-bacterial consortia based on wastewater. Technologies for studying microalgal-bacterial consortia in wastewater treatment.
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Affiliation(s)
- Ruimin Mu
- School of Municipal and Environmental Engineering, Shandong Jianzhu University, Jinan, China
| | - Yantian Jia
- School of Municipal and Environmental Engineering, Shandong Jianzhu University, Jinan, China
| | - Guixia Ma
- School of Municipal and Environmental Engineering, Shandong Jianzhu University, Jinan, China
| | | | - Kaixuan Hao
- School of Municipal and Environmental Engineering, Shandong Jianzhu University, Jinan, China
| | - Feng Qi
- School of Municipal and Environmental Engineering, Shandong Jianzhu University, Jinan, China
| | - Yuanyuan Shao
- School of Municipal and Environmental Engineering, Shandong Jianzhu University, Jinan, China
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31
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Perera IA, Abinandan S, R Subashchandrabose S, Venkateswarlu K, Naidu R, Megharaj M. Microalgal-bacterial consortia unveil distinct physiological changes to facilitate growth of microalgae. FEMS Microbiol Ecol 2021; 97:6105210. [PMID: 33476378 DOI: 10.1093/femsec/fiab012] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2020] [Accepted: 01/19/2021] [Indexed: 01/05/2023] Open
Abstract
Physiological changes that drive the microalgal-bacterial consortia are poorly understood so far. In the present novel study, we initially assessed five morphologically distinct microalgae for their ability in establishing consortia in Bold's basal medium with a bacterial strain, Variovorax paradoxus IS1, all isolated from wastewaters. Tetradesmus obliquus IS2 and Coelastrella sp. IS3 were further selected for gaining insights into physiological changes, including those of metabolomes in consortia involving V. paradoxus IS1. The distinct parameters investigated were pigments (chlorophyll a, b, and carotenoids), reactive oxygen species (ROS), lipids and metabolites that are implicated in major metabolic pathways. There was a significant increase (>1.2-fold) in pigments, viz., chlorophyll a, b and carotenoids, decrease in ROS and an enhanced lipid yield (>2-fold) in consortia than in individual cultures. In addition, the differential regulation of cellular metabolites such as sugars, amino acids, organic acids and phytohormones was distinct among the two microalgal-bacterial consortia. Our results thus indicate that the selected microalgal strains, T. obliquus IS2 and Coelastrella sp. IS3, developed efficient consortia with V. paradoxus IS1 by effecting the required physiological changes, including metabolomics. Such microalgal-bacterial consortia could largely be used in wastewater treatment and for production of value-added metabolites.
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Affiliation(s)
- Isiri Adhiwarie Perera
- Global Centre for Environmental Remediation (GCER), Faculty of Science, The University of Newcastle, ATC Building, Callaghan, NSW 2308, Australia
| | - Sudharsanam Abinandan
- Global Centre for Environmental Remediation (GCER), Faculty of Science, The University of Newcastle, ATC Building, Callaghan, NSW 2308, Australia.,Cooperative Research Centre for Contamination Assessment and Remediation of Environment (CRC CARE), The University of Newcastle, ATC Building, Callaghan, NSW 2308, Australia
| | - Suresh R Subashchandrabose
- Global Centre for Environmental Remediation (GCER), Faculty of Science, The University of Newcastle, ATC Building, Callaghan, NSW 2308, Australia
| | - Kadiyala Venkateswarlu
- Department of Microbiology, Sri Krishnadevaraya University, Anantapuramu 515003, Andhra Pradesh, India
| | - Ravi Naidu
- Global Centre for Environmental Remediation (GCER), Faculty of Science, The University of Newcastle, ATC Building, Callaghan, NSW 2308, Australia.,Cooperative Research Centre for Contamination Assessment and Remediation of Environment (CRC CARE), The University of Newcastle, ATC Building, Callaghan, NSW 2308, Australia
| | - Mallavarapu Megharaj
- Global Centre for Environmental Remediation (GCER), Faculty of Science, The University of Newcastle, ATC Building, Callaghan, NSW 2308, Australia.,Cooperative Research Centre for Contamination Assessment and Remediation of Environment (CRC CARE), The University of Newcastle, ATC Building, Callaghan, NSW 2308, Australia
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32
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Exploring the structural changes in nitrogen-fixing microorganisms of rhizosheath during the growth of Stipagrostis pennata in the desert. Biosci Rep 2021; 41:228169. [PMID: 33779713 PMCID: PMC8047386 DOI: 10.1042/bsr20201679] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2020] [Revised: 11/24/2020] [Accepted: 12/02/2020] [Indexed: 11/25/2022] Open
Abstract
Purpose: Rhizosheath is an adaptive feature for the survival of Stipagrostis pennata in desert systems. Although microorganisms play important ecological roles in promoting the nitrogen cycle of rhizosheath, the diversity and function of nitrogen-fixing microorganism communities have not been fully understood. Materials and methods: Therefore, the aim of the present study is to explore the nitrogen fixation ability of rhizosheaths and the changes in abundance of nitrogen-fixing microorganisms at different growth periods of S. pennata. We sequenced the nifH gene through sequencing to identify the structure and diversity of nitrogen-fixing microorganisms of S. pennata at different growth periods of rhizosheaths. Results: A total of 1256 operational taxonomic units (OTUs) were identified by nifH sequence and distributed in different growth periods. There were five OTUs distributed in each sample at the same time, and the abundance and diversity of microorganisms in fruit period were much higher than those in other periods. Mainly four phyla were involved, among which Proteobacteria was the most abundant in all groups. Conclusions: In general, the present study investigated the abundance and characteristics of nitrogen-fixing microorganisms of rhizosheaths in different growth periods of S. pennata. It also may elucidate and indicate that the structure of nitrogen-fixing microorganisms of rhizosheaths in different growth periods of S. pennata had changed.
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Na H, Jo SW, Do JM, Kim IS, Yoon HS. Production of Algal Biomass and High-Value Compounds Mediated by Interaction of Microalgal Oocystis sp. KNUA044 and Bacterium Sphingomonas KNU100. J Microbiol Biotechnol 2021; 31:387-397. [PMID: 33323676 PMCID: PMC9705891 DOI: 10.4014/jmb.2009.09055] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2020] [Revised: 12/11/2020] [Accepted: 12/11/2020] [Indexed: 12/15/2022]
Abstract
There is growing interest in the production of microalgae-based, high-value by-products as an emerging green biotechnology. However, a cultivation platform for Oocystis sp. has yet to be established. We therefore examined the effects of bacterial culture additions on the growth and production of valuable compounds of the microalgal strain Oocystis sp. KNUA044, isolated from a locally adapted region in Korea. The strain grew only in the presence of a clear supernatant of Sphingomonas sp. KNU100 culture solution and generated 28.57 mg/l/d of biomass productivity. Protein content (43.9 wt%) was approximately two-fold higher than carbohydrate content (29.4 wt%) and lipid content (13.9 wt%). Oocystis sp. KNUA044 produced the monosaccharide fucose (33 μg/mg and 0.94 mg/l/d), reported here for the first time. Fatty acid profiling showed high accumulation (over 60%) of polyunsaturated fatty acids (PUFAs) compared to saturated (29.4%) and monounsaturated fatty acids (9.9%) under the same culture conditions. Of these PUFAs, the algal strain produced the highest concentration of linolenic acid (C18:3 ω3; 40.2%) in the omega-3 family and generated eicosapentaenoic acid (C20:5 ω3; 6.0%), also known as EPA. Based on these results, we suggest that the application of Sphingomonas sp. KNU100 for strain-dependent cultivation of Oocystis sp. KNUA044 holds future promise as a bioprocess capable of increasing algal biomass and high-value bioactive by-products, including fucose and PUFAs such as linolenic acid and EPA.
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Affiliation(s)
- Ho Na
- Department of Biology, Kyungpook National University, Daegu 41566, Republic of Korea,School of Life Sciences, BK21 Plus KNU Creative BioResearch Group, Kyungpook National University, Daegu 41566, Republic of Korea
| | - Seung-Woo Jo
- Advanced Bio-Resource Research Center, Kyungpook National University, Daegu 41566, Republic of Korea
| | - Jeong-Mi Do
- Department of Biology, Kyungpook National University, Daegu 41566, Republic of Korea,School of Life Sciences, BK21 Plus KNU Creative BioResearch Group, Kyungpook National University, Daegu 41566, Republic of Korea
| | - Il-Sup Kim
- Advanced Bio-Resource Research Center, Kyungpook National University, Daegu 41566, Republic of Korea,Corresponding author I.S. Kim E-mail:
| | - Ho-Sung Yoon
- Department of Biology, Kyungpook National University, Daegu 41566, Republic of Korea,School of Life Sciences, BK21 Plus KNU Creative BioResearch Group, Kyungpook National University, Daegu 41566, Republic of Korea,Advanced Bio-Resource Research Center, Kyungpook National University, Daegu 41566, Republic of Korea,H.S. Yoon E-mail:
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Ali SS, Kornaros M, Manni A, Al-Tohamy R, El-Shanshoury AERR, Matter IM, Elsamahy T, Sobhy M, Sun J. Advances in microorganisms-based biofertilizers: Major mechanisms and applications. BIOFERTILIZERS 2021:371-385. [DOI: 10.1016/b978-0-12-821667-5.00023-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/02/2023]
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Luo J, Deng J, Cui L, Chang P, Dai X, Yang C, Li N, Ren Z, Zhang X. The potential assessment of green alga Chlamydomonas reinhardtii CC-503 in the biodegradation of benz(a)anthracene and the related mechanism analysis. CHEMOSPHERE 2020; 249:126097. [PMID: 32078851 DOI: 10.1016/j.chemosphere.2020.126097] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/22/2019] [Revised: 01/22/2020] [Accepted: 02/01/2020] [Indexed: 05/22/2023]
Abstract
Benz(a)anthracene (BaA) is a polycyclic aromatic hydrocarbons (PAHs), that belongs to a group of carcinogenic and mutagenic persistent organic pollutants found in a variety of ecological habitats. In this study, the efficient biodegradation of BaA by a green alga Chlamydomonas reinhardtii (C. reinhardtii) CC-503 was investigated. The results showed that the growth of C. reinhardtii was hardly affected with an initial concentration of 10 mg/L, but was inhibited significantly under higher concentrations of BaA (>30 mg/L) (p < 0.05). We demonstrated that the relatively high concentration of 10 mg/L BaA was degraded completely in 11 days, which indicated that C. reinhardtii had an efficient degradation system. During the degradation, the intermediate metabolites were determined to be isomeric phenanthrene or anthracene, 2,6-diisopropylnaphthalene, 1,3-diisopropylnaphthalene, 1,7-diisopropylnaphthalene, and cyclohexanol. The enzymes involved in the degradation included the homogentisate 1,2-dioxygenase (HGD), the carboxymethylenebutenolidase, the ribulose 1,5-bisphosphate carboxylase/oxygenase (Rubisco) and the ubiquinol oxidase. The respective genes encoding these proteins were significantly up-regulated ranging from 3.17 fold to 13.03 fold and the activity of enzymes, such as HGD and Rubisco, was significantly induced up to 4.53 and 1.46 fold (p < 0.05), during the BaA metabolism. This efficient degradation ability suggests that the green alga C. reinhardtii CC-503 may be a sustainable candidate for PAHs remediation.
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Affiliation(s)
- Jun Luo
- Research Center of Bioenergy and Bioremediation, College of Resource and Environment, Southwest University, 400715, Chongqing, PR China
| | - Jinglin Deng
- Research Center of Bioenergy and Bioremediation, College of Resource and Environment, Southwest University, 400715, Chongqing, PR China
| | - Lili Cui
- Institute of Environment and Ecology, Shandong Normal University, 250014, Ji'nan, PR China
| | - Peng Chang
- Research Center of Bioenergy and Bioremediation, College of Resource and Environment, Southwest University, 400715, Chongqing, PR China
| | - Xianzhu Dai
- Research Center of Bioenergy and Bioremediation, College of Resource and Environment, Southwest University, 400715, Chongqing, PR China
| | - Caiyun Yang
- Research Center of Bioenergy and Bioremediation, College of Resource and Environment, Southwest University, 400715, Chongqing, PR China
| | - Nannan Li
- Research Center of Bioenergy and Bioremediation, College of Resource and Environment, Southwest University, 400715, Chongqing, PR China
| | - Zongming Ren
- Institute of Environment and Ecology, Shandong Normal University, 250014, Ji'nan, PR China; Engineering Research Center of Eco-environment in Three Gorges Reservoir Region, Ministry of Education, China Three Gorges University, 443002, Yichang, PR China.
| | - Xiaohui Zhang
- Research Center of Bioenergy and Bioremediation, College of Resource and Environment, Southwest University, 400715, Chongqing, PR China.
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Abinandan S, Subashchandrabose SR, Venkateswarlu K, Megharaj M. Sustainable Iron Recovery and Biodiesel Yield by Acid-Adapted Microalgae, Desmodesmus sp. MAS1 and Heterochlorella sp. MAS3, Grown in Synthetic Acid Mine Drainage. ACS OMEGA 2020; 5:6888-6894. [PMID: 32258924 PMCID: PMC7114686 DOI: 10.1021/acsomega.0c00255] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/18/2020] [Accepted: 03/09/2020] [Indexed: 05/17/2023]
Abstract
Sustainable resource recovery is the key to manage the overburden of various waste entities of mining practices. The present study demonstrates for the first time a novel approach for iron recovery and biodiesel yield from two acid-adapted microalgae, Desmodesmus sp. MAS1 and Heterochlorella sp. MAS3, grown in synthetic acid mine drainage (SAMD). Virtually, there was no difference in the growth of the strain MAS3 both in Bold's basal medium (control) and SAMD. Using the IC50 level (200 mg L-1) and a lower concentration (50 mg L-1) of iron in SAMD, the cell granularity, exopolysaccharide (EPS) secretion, iron recovery, and biodiesel were assessed in both the strains. Both cell granularity and accumulation of EPS were significantly altered under metal stress in SAMD, resulting in an increase in total accumulation of iron. Growth of the microalgal strains in SAMD yielded 12-20% biodiesel, with no traces of heavy metals, from the biomass. The entire amount of iron, accumulated intracellularly, was recovered in the residual biomass. Our results on the ability of the acid-adapted microalgal strains in iron recovery and yield of biodiesel when grown in SAMD indicate that they could be the potential candidates for use in bioremediation of extreme habitats like AMD.
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Affiliation(s)
- Sudharsanam Abinandan
- Global
Centre for Environmental Remediation (GCER), Faculty of Science, University of Newcastle, ATC Building, Callaghan, New South Wales 2308, Australia
| | - Suresh R. Subashchandrabose
- Global
Centre for Environmental Remediation (GCER), Faculty of Science, University of Newcastle, ATC Building, Callaghan, New South Wales 2308, Australia
- Cooperative
Research Centre for Contamination Assessment and Remediation of Environment
(CRC CARE), University of Newcastle, ATC Building, Callaghan, New South Wales 2308, Australia
| | - Kadiyala Venkateswarlu
- Formerly
Department of Microbiology, Sri Krishnadevaraya
University, Anantapuramu 515003, India
| | - Mallavarapu Megharaj
- Global
Centre for Environmental Remediation (GCER), Faculty of Science, University of Newcastle, ATC Building, Callaghan, New South Wales 2308, Australia
- Cooperative
Research Centre for Contamination Assessment and Remediation of Environment
(CRC CARE), University of Newcastle, ATC Building, Callaghan, New South Wales 2308, Australia
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Rego A, Raio F, Martins TP, Ribeiro H, Sousa AGG, Séneca J, Baptista MS, Lee CK, Cary SC, Ramos V, Carvalho MF, Leão PN, Magalhães C. Actinobacteria and Cyanobacteria Diversity in Terrestrial Antarctic Microenvironments Evaluated by Culture-Dependent and Independent Methods. Front Microbiol 2019; 10:1018. [PMID: 31214128 PMCID: PMC6555387 DOI: 10.3389/fmicb.2019.01018] [Citation(s) in RCA: 36] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2018] [Accepted: 04/24/2019] [Indexed: 12/13/2022] Open
Abstract
Bacterial diversity from McMurdo Dry Valleys in Antarctica, the coldest desert on earth, has become more easily assessed with the development of High Throughput Sequencing (HTS) techniques. However, some of the diversity remains inaccessible by the power of sequencing. In this study, we combine cultivation and HTS techniques to survey actinobacteria and cyanobacteria diversity along different soil and endolithic micro-environments of Victoria Valley in McMurdo Dry Valleys. Our results demonstrate that the Dry Valleys actinobacteria and cyanobacteria distribution is driven by environmental forces, in particular the effect of water availability and endolithic environments clearly conditioned the distribution of those communities. Data derived from HTS show that the percentage of cyanobacteria decreases from about 20% in the sample closest to the water source to negligible values on the last three samples of the transect with less water availability. Inversely, actinobacteria relative abundance increases from about 20% in wet soils to over 50% in the driest samples. Over 30% of the total HTS data set was composed of actinobacterial strains, mainly distributed by 5 families: Sporichthyaceae, Euzebyaceae, Patulibacteraceae, Nocardioidaceae, and Rubrobacteraceae. However, the 11 actinobacterial strains isolated in this study, belonged to Micrococcaceae and Dermacoccaceae families that were underrepresented in the HTS data set. A total of 10 cyanobacterial strains from the order Synechococcales were also isolated, distributed by 4 different genera (Nodosilinea, Leptolyngbya, Pectolyngbya, and Acaryochloris-like). In agreement with the cultivation results, Leptolyngbya was identified as dominant genus in the HTS data set. Acaryochloris-like cyanobacteria were found exclusively in the endolithic sample and represented 44% of the total 16S rRNA sequences, although despite our efforts we were not able to properly isolate any strain from this Acaryochloris-related group. The importance of combining cultivation and sequencing techniques is highlighted, as we have shown that culture-dependent methods employed in this study were able to retrieve actinobacteria and cyanobacteria taxa that were not detected in HTS data set, suggesting that the combination of both strategies can be usefull to recover both abundant and rare members of the communities.
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Affiliation(s)
- Adriana Rego
- Interdisciplinary Centre of Marine and Environmental Research (CIIMAR/CIMAR), University of Porto, Porto, Portugal.,Institute of Biomedical Sciences Abel Salazar (ICBAS), University of Porto, Porto, Portugal
| | - Francisco Raio
- Interdisciplinary Centre of Marine and Environmental Research (CIIMAR/CIMAR), University of Porto, Porto, Portugal
| | - Teresa P Martins
- Interdisciplinary Centre of Marine and Environmental Research (CIIMAR/CIMAR), University of Porto, Porto, Portugal
| | - Hugo Ribeiro
- Interdisciplinary Centre of Marine and Environmental Research (CIIMAR/CIMAR), University of Porto, Porto, Portugal.,Institute of Biomedical Sciences Abel Salazar (ICBAS), University of Porto, Porto, Portugal
| | - António G G Sousa
- Interdisciplinary Centre of Marine and Environmental Research (CIIMAR/CIMAR), University of Porto, Porto, Portugal
| | - Joana Séneca
- Interdisciplinary Centre of Marine and Environmental Research (CIIMAR/CIMAR), University of Porto, Porto, Portugal
| | - Mafalda S Baptista
- Interdisciplinary Centre of Marine and Environmental Research (CIIMAR/CIMAR), University of Porto, Porto, Portugal.,International Centre for Terrestrial Antarctic Research, University of Waikato, Hamilton, New Zealand
| | - Charles K Lee
- International Centre for Terrestrial Antarctic Research, University of Waikato, Hamilton, New Zealand.,School of Science, University of Waikato, Hamilton, New Zealand
| | - S Craig Cary
- International Centre for Terrestrial Antarctic Research, University of Waikato, Hamilton, New Zealand.,School of Science, University of Waikato, Hamilton, New Zealand
| | - Vitor Ramos
- Interdisciplinary Centre of Marine and Environmental Research (CIIMAR/CIMAR), University of Porto, Porto, Portugal
| | - Maria F Carvalho
- Interdisciplinary Centre of Marine and Environmental Research (CIIMAR/CIMAR), University of Porto, Porto, Portugal
| | - Pedro N Leão
- Interdisciplinary Centre of Marine and Environmental Research (CIIMAR/CIMAR), University of Porto, Porto, Portugal
| | - Catarina Magalhães
- Interdisciplinary Centre of Marine and Environmental Research (CIIMAR/CIMAR), University of Porto, Porto, Portugal.,Faculty of Sciences, University of Porto, Porto, Portugal
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Phototrophic biofilm communities and adaptation to growth on ancient archaeological surfaces. ANN MICROBIOL 2019. [DOI: 10.1007/s13213-019-01471-w] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022] Open
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Abinandan S, Subashchandrabose SR, Panneerselvan L, Venkateswarlu K, Megharaj M. Potential of acid-tolerant microalgae, Desmodesmus sp. MAS1 and Heterochlorella sp. MAS3, in heavy metal removal and biodiesel production at acidic pH. BIORESOURCE TECHNOLOGY 2019; 278:9-16. [PMID: 30669030 DOI: 10.1016/j.biortech.2019.01.053] [Citation(s) in RCA: 36] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/09/2018] [Revised: 01/11/2019] [Accepted: 01/12/2019] [Indexed: 05/28/2023]
Abstract
Metals in traces are vital for microalgae but their occurrence at high concentrations in habitats is a serious ecological concern. We investigated the potential of two acid-tolerant microalgae, Desmodesmus sp. MAS1 and Heterochlorella sp. MAS3, isolated from neutral environments, for simultaneous removal of heavy metals such as copper (Cu), iron (Fe), manganese (Mn) and zinc (Zn), and production of biodiesel when grown at pH 3.5. Excepting Cu, the selected metals at concentrations of 10-20 mg L-1 supported good growth of both the strains. Cellular analysis for metal removal revealed the predominance of intracellular mechanism in both the strains resulting in 40-80 and 40-60% removal of Fe and Mn, respectively. In-situ transesterification of biomass indicated enhanced biodiesel yield with increasing concentrations of metals suggesting that both these acid-tolerant microalgae may be the suitable candidates for simultaneous remediation, and sustainable biomass and biodiesel production in environments like metal-rich acid mine drainages.
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Affiliation(s)
- Sudharsanam Abinandan
- Global Centre for Environmental Remediation (GCER), Faculty of Science, ATC Building, University of Newcastle, Callaghan, NSW 2308, Australia
| | - Suresh R Subashchandrabose
- Global Centre for Environmental Remediation (GCER), Faculty of Science, ATC Building, University of Newcastle, Callaghan, NSW 2308, Australia; Cooperative Research Centre for Contamination Assessment and Remediation of the Environment (CRC CARE), University of Newcastle, ATC Building, Callaghan, NSW 2308, Australia
| | - Logeshwaran Panneerselvan
- Global Centre for Environmental Remediation (GCER), Faculty of Science, ATC Building, University of Newcastle, Callaghan, NSW 2308, Australia; Cooperative Research Centre for Contamination Assessment and Remediation of the Environment (CRC CARE), University of Newcastle, ATC Building, Callaghan, NSW 2308, Australia
| | - Kadiyala Venkateswarlu
- Formerly Department of Microbiology, Sri Krishnadevaraya University, Anantapur 515055, India
| | - Mallavarapu Megharaj
- Global Centre for Environmental Remediation (GCER), Faculty of Science, ATC Building, University of Newcastle, Callaghan, NSW 2308, Australia; Cooperative Research Centre for Contamination Assessment and Remediation of the Environment (CRC CARE), University of Newcastle, ATC Building, Callaghan, NSW 2308, Australia.
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