1
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Yu B, Zhou C, Wang Z, Bucher M, Schaaf G, Sawers RJH, Chen X, Hochholdinger F, Zou C, Yu P. Maize zinc uptake is influenced by arbuscular mycorrhizal symbiosis under various soil phosphorus availabilities. THE NEW PHYTOLOGIST 2024; 243:1936-1950. [PMID: 38973063 DOI: 10.1111/nph.19952] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2024] [Accepted: 06/23/2024] [Indexed: 07/09/2024]
Abstract
The antagonistic interplay between phosphorus (P) and zinc (Zn) in plants is well established. However, the molecular mechanisms mediating those interactions as influenced by arbuscular mycorrhizal (AM) symbiosis remain unclear. We investigated Zn concentrations, root AM symbiosis, and transcriptome profiles of maize roots grown under field conditions upon different P levels. We also validated genotype-dependent P-Zn uptake in selected genotypes from a MAGIC population and conducted mycorrhizal inoculation experiments using mycorrhizal-defective mutant pht1;6 to elucidate the significance of AM symbiosis in P-Zn antagonism. Finally, we assessed how P supply affects Zn transporters and Zn uptake in extraradical hyphae within a three-compartment system. Elevated P levels led to a significant reduction in maize Zn concentration across the population, correlating with a marked decline in AM symbiosis, thus elucidating the P-Zn antagonism. We also identified ZmPht1;6 is crucial for AM symbiosis and confirmed that P-Zn antagonistic uptake is dependent on AM symbiosis. Moreover, we found that high P suppressed the expression of the fungal RiZRT1 and RiZnT1 genes, potentially impacting hyphal Zn uptake. We conclude that high P exerts systemic regulation over root and AM hyphae-mediated Zn uptake in maize. These findings hold implications for breeding Zn deficiency-tolerant maize varieties.
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Affiliation(s)
- Baogang Yu
- Laboratory of Nutrient Use and Management, College of Resources and Environmental Sciences, China Agricultural University, 100193, Beijing, China
- Emmy Noether Group Root Functional Biology, Institute of Crop Science and Resource Conservation, University of Bonn, 53113, Bonn, Germany
- Crop Functional Genomics, Institute of Crop Science and Resource Conservation, University of Bonn, 53113, Bonn, Germany
| | - Chengxiang Zhou
- Laboratory of Nutrient Use and Management, College of Resources and Environmental Sciences, China Agricultural University, 100193, Beijing, China
| | - Zhonghua Wang
- National Engineering Research Center of Wheat and Maize, Maize Research Institute, Shandong Academy of Agricultural Sciences, 250100, Jinan, China
| | - Marcel Bucher
- Institute for Plant Sciences, Cologne Biocenter, University of Cologne, 50674, Cologne, Germany
- Cluster of Excellence on Plant Sciences, University of Cologne, 50674, Cologne, Germany
| | - Gabriel Schaaf
- Plant Nutrition, Institute of Crop Science and Resource Conservation, University of Bonn, 53115, Bonn, Germany
| | - Ruairidh J H Sawers
- Department of Plant Science, Pennsylvania State University, State College, PA, 16802, USA
| | - Xinping Chen
- College of Resources and Environment, and Academy of Agricultural Sciences, Southwest University, 400715, Chongqing, China
| | - Frank Hochholdinger
- Crop Functional Genomics, Institute of Crop Science and Resource Conservation, University of Bonn, 53113, Bonn, Germany
| | - Chunqin Zou
- Laboratory of Nutrient Use and Management, College of Resources and Environmental Sciences, China Agricultural University, 100193, Beijing, China
| | - Peng Yu
- Emmy Noether Group Root Functional Biology, Institute of Crop Science and Resource Conservation, University of Bonn, 53113, Bonn, Germany
- Crop Functional Genomics, Institute of Crop Science and Resource Conservation, University of Bonn, 53113, Bonn, Germany
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2
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Hornstein ED, Charles M, Franklin M, Edwards B, Vintila S, Kleiner M, Sederoff H. IPD3, a master regulator of arbuscular mycorrhizal symbiosis, affects genes for immunity and metabolism of non-host Arabidopsis when restored long after its evolutionary loss. PLANT MOLECULAR BIOLOGY 2024; 114:21. [PMID: 38368585 PMCID: PMC10874911 DOI: 10.1007/s11103-024-01422-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/26/2023] [Accepted: 01/20/2024] [Indexed: 02/19/2024]
Abstract
Arbuscular mycorrhizal symbiosis (AM) is a beneficial trait originating with the first land plants, which has subsequently been lost by species scattered throughout the radiation of plant diversity to the present day, including the model Arabidopsis thaliana. To explore if elements of this apparently beneficial trait are still present and could be reactivated we generated Arabidopsis plants expressing a constitutively active form of Interacting Protein of DMI3, a key transcription factor that enables AM within the Common Symbiosis Pathway, which was lost from Arabidopsis along with the AM host trait. We characterize the transcriptomic effect of expressing IPD3 in Arabidopsis with and without exposure to the AM fungus (AMF) Rhizophagus irregularis, and compare these results to the AM model Lotus japonicus and its ipd3 knockout mutant cyclops-4. Despite its long history as a non-AM species, restoring IPD3 in the form of its constitutively active DNA-binding domain to Arabidopsis altered expression of specific gene networks. Surprisingly, the effect of expressing IPD3 in Arabidopsis and knocking it out in Lotus was strongest in plants not exposed to AMF, which is revealed to be due to changes in IPD3 genotype causing a transcriptional state, which partially mimics AMF exposure in non-inoculated plants. Our results indicate that molecular connections to symbiosis machinery remain in place in this nonAM species, with implications for both basic science and the prospect of engineering this trait for agriculture.
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Affiliation(s)
- Eli D Hornstein
- Department of Plant and Microbial Biology, North Carolina State University, Raleigh, NC, 27695, USA
| | - Melodi Charles
- Department of Plant and Microbial Biology, North Carolina State University, Raleigh, NC, 27695, USA
| | - Megan Franklin
- Department of Plant and Microbial Biology, North Carolina State University, Raleigh, NC, 27695, USA
| | - Brianne Edwards
- Department of Plant and Microbial Biology, North Carolina State University, Raleigh, NC, 27695, USA
| | - Simina Vintila
- Department of Plant and Microbial Biology, North Carolina State University, Raleigh, NC, 27695, USA
| | - Manuel Kleiner
- Department of Plant and Microbial Biology, North Carolina State University, Raleigh, NC, 27695, USA
| | - Heike Sederoff
- Department of Plant and Microbial Biology, North Carolina State University, Raleigh, NC, 27695, USA.
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3
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Li M, Perez-Limón S, Ramírez-Flores MR, Barrales-Gamez B, Meraz-Mercado MA, Ziegler G, Baxter I, Olalde-Portugal V, Sawers RJH. Mycorrhizal status and host genotype interact to shape plant nutrition in field grown maize (Zea mays ssp. mays). MYCORRHIZA 2023; 33:345-358. [PMID: 37851276 PMCID: PMC10752836 DOI: 10.1007/s00572-023-01127-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2023] [Accepted: 09/13/2023] [Indexed: 10/19/2023]
Abstract
Arbuscular mycorrhizal fungi (AMF) establish symbioses with the major cereal crops, providing plants with increased access to nutrients while enhancing their tolerance to toxic heavy metals. However, not all plant varieties benefit equally from this association. In this study, we used quantitative trait loci (QTL) mapping to evaluate the combined effect of host genotypic variation (G) and AMF across 141 genotypes on the concentration of 20 mineral elements in the leaves and grain of field grown maize (Zea mays spp. mays). Our mapping design included selective incorporation of a castor AMF-incompatibility mutation, allowing estimation of AMF, QTL and QTLxAMF effects by comparison of mycorrhizal and non-mycorrhizal plants. Overall, AMF compatibility was associated with higher concentrations of boron (B), copper (Cu), molybdenum (Mo), phosphorus (P), selenium (Se) and zinc (Zn) and lower concentrations of arsenic (As), iron (Fe), magnesium (Mg), manganese (Mn), potassium (K) and strontium (Sr). In addition to effects on individual elements, pairwise correlation matrices for element concentration differed between mycorrhizal and non-mycorrhizal plants. We mapped 22 element QTLs, including 18 associated with QTLxAMF effects that indicate plant genotype-specific differences in the impact of AMF on the host ionome. Although there is considerable interest in AMF as biofertilizers, it remains challenging to estimate the impact of AMF in the field. Our design illustrates an effective approach for field evaluation of AMF effects. Furthermore, we demonstrate the capacity of the ionome to reveal host genotype-specific variation in the impact of AMF on plant nutrition.
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Affiliation(s)
- Meng Li
- Department of Plant Science, The Pennsylvania State University, State College, PA, 16802, USA
| | - Sergio Perez-Limón
- Department of Plant Science, The Pennsylvania State University, State College, PA, 16802, USA
| | - M Rosario Ramírez-Flores
- Departamento de Biotecnología y Bioquímica, Centro de Investigación y de Estudios Avanzados (CINVESTAV-IPN), Irapuato, Guanajuato, 36821, México
- Bioscience Division, Oak Ridge National Laboratory, 1 Bethel Valley Rd, Oak Ridge, TN, 37830, USA
| | - Benjamín Barrales-Gamez
- Departamento de Biotecnología y Bioquímica, Centro de Investigación y de Estudios Avanzados (CINVESTAV-IPN), Irapuato, Guanajuato, 36821, México
- Postgrado en Recursos Genéticos y Productividad-Genética, Campus Montecillo, Colegio de Postgraduados, Montecillo, Texcoco, Edo. de México, 56230, México
| | - Marco Antonio Meraz-Mercado
- Departamento de Biotecnología y Bioquímica, Centro de Investigación y de Estudios Avanzados (CINVESTAV-IPN), Irapuato, Guanajuato, 36821, México
| | - Gregory Ziegler
- Donald Danforth Plant Science Center, St. Louis, MO, 63132, USA
| | - Ivan Baxter
- Donald Danforth Plant Science Center, St. Louis, MO, 63132, USA
| | - Víctor Olalde-Portugal
- Departamento de Biotecnología y Bioquímica, Centro de Investigación y de Estudios Avanzados (CINVESTAV-IPN), Irapuato, Guanajuato, 36821, México
| | - Ruairidh J H Sawers
- Department of Plant Science, The Pennsylvania State University, State College, PA, 16802, USA.
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4
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Hornstein ED, Charles M, Franklin M, Edwards B, Vintila S, Kleiner M, Sederoff H. Re-engineering a lost trait: IPD3, a master regulator of arbuscular mycorrhizal symbiosis, affects genes for immunity and metabolism of non-host Arabidopsis when restored long after its evolutionary loss. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.03.06.531368. [PMID: 36945518 PMCID: PMC10028889 DOI: 10.1101/2023.03.06.531368] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/09/2023]
Abstract
Arbuscular mycorrhizal symbiosis (AM) is a beneficial trait originating with the first land plants, which has subsequently been lost by species scattered throughout the radiation of plant diversity to the present day, including the model Arabidopsis thaliana. To explore why an apparently beneficial trait would be repeatedly lost, we generated Arabidopsis plants expressing a constitutively active form of Interacting Protein of DMI3, a key transcription factor that enables AM within the Common Symbiosis Pathway, which was lost from Arabidopsis along with the AM host trait. We characterize the transcriptomic effect of expressing IPD3 in Arabidopsis with and without exposure to the AM fungus (AMF) Rhizophagus irregularis, and compare these results to the AM model Lotus japonicus and its ipd3 knockout mutant cyclops-4. Despite its long history as a non-AM species, restoring IPD3 in the form of its constitutively active DNA-binding domain to Arabidopsis altered expression of specific gene networks. Surprisingly, the effect of expressing IPD3 in Arabidopsis and knocking it out in Lotus was strongest in plants not exposed to AMF, which is revealed to be due to changes in IPD3 genotype causing a transcriptional state which partially mimics AMF exposure in non-inoculated plants. Our results indicate that despite the long interval since loss of AM and IPD3 in Arabidopsis, molecular connections to symbiosis machinery remain in place in this nonAM species, with implications for both basic science and the prospect of engineering this trait for agriculture.
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Affiliation(s)
- Eli D Hornstein
- Department of Plant and Microbial Biology, North Carolina State University, Raleigh, NC 27695, USA
| | - Melodi Charles
- Department of Plant and Microbial Biology, North Carolina State University, Raleigh, NC 27695, USA
| | - Megan Franklin
- Department of Plant and Microbial Biology, North Carolina State University, Raleigh, NC 27695, USA
| | - Brianne Edwards
- Department of Plant and Microbial Biology, North Carolina State University, Raleigh, NC 27695, USA
| | - Simina Vintila
- Department of Plant and Microbial Biology, North Carolina State University, Raleigh, NC 27695, USA
| | - Manuel Kleiner
- Department of Plant and Microbial Biology, North Carolina State University, Raleigh, NC 27695, USA
| | - Heike Sederoff
- Department of Plant and Microbial Biology, North Carolina State University, Raleigh, NC 27695, USA
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5
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Tran CTK, Watts-Williams SJ, Smernik RJ, Cavagnaro TR. Arbuscular mycorrhizas increased tomato biomass and nutrition but did not affect local soil P availability or 16S bacterial community in the field. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 819:152620. [PMID: 35007577 DOI: 10.1016/j.scitotenv.2021.152620] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/16/2021] [Revised: 12/16/2021] [Accepted: 12/19/2021] [Indexed: 06/14/2023]
Abstract
While interest in arbuscular mycorrhizal (AM) fungal effects on soil phosphorus (P) have recently increased, field experiments on this topic are lacking. While microcosm studies provided valuable insights, the lack of field studies represents a knowledge gap. Here, we present a field study in which we grew a mycorrhiza-defective tomato (Solanum lycopersicum L.) genotype (named rmc) and its mycorrhizal wild-type progenitor (named 76R) with and without additional fertiliser, using a drip-irrigation system to examine the impacts of the AM symbiosis on soil P availability and plant growth and nutrition. AM effects on fruit biomass and nutrients, soil nutrient availability, soil moisture and the soil bacterial community were examined. At the time of harvest, the AM tomato plants without fertiliser had the same early season fruit biomass and fruit nutrient concentrations as plants that received fertiliser. The presence of roots reduced the concentration of available soil P, ammonium and soil moisture in the top 10 cm soil layer. Arbuscular mycorrhizas did not significantly affect soil P availability, soil moisture, or 16S bacterial community composition. These findings suggest an indirect role for AM fungi in tomato production but not necessarily a direct role in determining soil physicochemical traits, during the one season that this experiment was conducted. While longer-term field studies may be required in the future, the present study provides new insights into impacts of AM fungi on P availability and uptake in a field soil system.
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Affiliation(s)
- Cuc T K Tran
- The Waite Research Institute and The School of Agriculture, Food and Wine, The University of Adelaide, Waite Campus, PMB1, Glen Osmond, SA 5064, Australia
| | - Stephanie J Watts-Williams
- The Waite Research Institute and The School of Agriculture, Food and Wine, The University of Adelaide, Waite Campus, PMB1, Glen Osmond, SA 5064, Australia.
| | - Ronald J Smernik
- The Waite Research Institute and The School of Agriculture, Food and Wine, The University of Adelaide, Waite Campus, PMB1, Glen Osmond, SA 5064, Australia
| | - Timothy R Cavagnaro
- The Waite Research Institute and The School of Agriculture, Food and Wine, The University of Adelaide, Waite Campus, PMB1, Glen Osmond, SA 5064, Australia
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6
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Yu BG, Chen XX, Cao WQ, Liu YM, Zou CQ. Responses in Zinc Uptake of Different Mycorrhizal and Non-mycorrhizal Crops to Varied Levels of Phosphorus and Zinc Applications. FRONTIERS IN PLANT SCIENCE 2020; 11:606472. [PMID: 33343606 PMCID: PMC7744350 DOI: 10.3389/fpls.2020.606472] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2020] [Accepted: 11/03/2020] [Indexed: 06/01/2023]
Abstract
Negative effects of high phosphorus (P) application on zinc (Zn) nutrition have been observed in many crops. This study investigated the Zn responses of three typical crops to varied P and Zn applications. A pot experiment was conducted using two mycorrhizal crops (maize and soybean) and one non-mycorrhizal crop (oilseed rape) under three levels of P, two levels of Zn, and two levels of benomyl. Results showed that P application significantly decreased shoot and root Zn concentrations, Zn uptake, and Zn acquisition efficiency (ZnAE) of the three crops irrespective of Zn rate, and that these reductions were greater for maize and soybean than for oilseed rape. Zn application alleviated the P inhibition of Zn uptake in the three crops. The arbuscular mycorrhizal fungi (AMF) colonization of maize and soybean contributed most to the negative effects of increasing P application on Zn uptake, explaining 79-89 and 64-69% of the effect, respectively. For oilseed rape, root dry weight and root Zn concentration explained 90% of the decrease in Zn uptake caused by P application. These results suggest that there is another pathway in addition to the mycorrhizal pathway regulating Zn uptake under mediation by P supply.
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Affiliation(s)
| | | | | | | | - Chun-Qin Zou
- College of Resources and Environmental Sciences, National Academy of Agriculture Green Development, Key Laboratory of Plant-Soil Interactions, Ministry of Education, China Agricultural University, Beijing, China
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7
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Tran CTK, Watts-Williams SJ, Smernik RJ, Cavagnaro TR. Effects of plant roots and arbuscular mycorrhizas on soil phosphorus leaching. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 722:137847. [PMID: 32199376 DOI: 10.1016/j.scitotenv.2020.137847] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2019] [Revised: 02/13/2020] [Accepted: 03/09/2020] [Indexed: 06/10/2023]
Abstract
While the impact of arbuscular mycorrhizal fungi (AMF) on phosphorus (P) uptake is well understood, the mechanism(s) of how these fungi affect P leaching from soil is still unclear. Here we present results of a study in which we grew a mycorrhiza-defective tomato (Solanum lycopersicum L.) genotype (named rmc) and its mycorrhizal wild-type progenitor (named 76R) in microcosms containing non-sterile soil, to examine the influence of roots and AMF on P leaching. More P was leached from the planted microcosms as compared to the plant-free controls. Further, although there was more plant biomass and greater P uptake in the mycorrhizal plant treatments, these treatments were associated with the most leaching of total P, reactive P, and dissolved organic carbon (DOC). There was a strong correlation between the total P and DOC leached, suggesting that root and fungal exudates may have affected P leaching. These findings provide new insights into the impact of roots and AMF on nutrient leaching in soils.
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Affiliation(s)
- Cuc T K Tran
- The Waite Research Institute and The School of Agriculture, Food and Wine, The University of Adelaide, Waite Campus, PMB1, Glen Osmond, SA 5064, Australia.
| | - Stephanie J Watts-Williams
- The Waite Research Institute and The School of Agriculture, Food and Wine, The University of Adelaide, Waite Campus, PMB1, Glen Osmond, SA 5064, Australia; Australian Research Council Centre of Excellence in Plant Energy Biology, University of Adelaide, Glen Osmond, South Australia, Australia
| | - Ronald J Smernik
- The Waite Research Institute and The School of Agriculture, Food and Wine, The University of Adelaide, Waite Campus, PMB1, Glen Osmond, SA 5064, Australia
| | - Timothy R Cavagnaro
- The Waite Research Institute and The School of Agriculture, Food and Wine, The University of Adelaide, Waite Campus, PMB1, Glen Osmond, SA 5064, Australia
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8
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Zhang S, You Z, Guo X, Yun W, Xia Y, Rillig MC. Suitability of Mycorrhiza-Defective Rice and Its Progenitor for Studies on the Control of Nitrogen Loss in Paddy Fields via Arbuscular Mycorrhiza. Front Microbiol 2020; 11:186. [PMID: 32117181 PMCID: PMC7019042 DOI: 10.3389/fmicb.2020.00186] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2019] [Accepted: 01/24/2020] [Indexed: 12/22/2022] Open
Abstract
Employing mycorrhiza-defective mutants and their progenitors does not require inoculation or elimination of the resident microbial community in the experimental study of mycorrhizal soil ecology. We aimed to examine the suitability of mycorrhiza-defective rice (non-mycorrhizal, Oryza sativa L., cv. Nipponbare) and its progenitor (mycorrhizal) to evaluate nitrogen (N) loss control from paddy fields via arbuscular mycorrhizal (AM) fungi. We grew the two rice lines in soils with the full community of AM fungi and investigated root AM colonization. In the absence of AM fungi, we estimated rice N content, soil N concentration and microbial community on the basis of phospholipid fatty acids; we also quantified N loss via NH3 volatilization, N2O emission, runoff and leaching. In the presence of AM fungi, we did not find any evidence of AM colonization for non-mycorrhizal rice while mycorrhizal rice was colonized and percentage of root colonization was 17-24%. In the absence of AM fungi, the two rice lines had similar N content, soil N concentration and microbial community. Importantly, there was no significant difference in N loss via all the four pathways between mycorrhizal and non-mycorrhizal systems. This mycorrhizal/non-mycorrhizal rice pair is suitable for further research on the role of AM fungi in the control of soil N loss in paddy fields.
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Affiliation(s)
- Shujuan Zhang
- College of Urban Construction, Nanjing Tech University, Nanjing, China
| | - Zhaoyang You
- College of Urban Construction, Nanjing Tech University, Nanjing, China
| | - Xinyue Guo
- College of Urban Construction, Nanjing Tech University, Nanjing, China
| | - Wenfei Yun
- College of Urban Construction, Nanjing Tech University, Nanjing, China
| | - Yu Xia
- College of Urban Construction, Nanjing Tech University, Nanjing, China
| | - Matthias C. Rillig
- Institut für Biologie, Plant Ecology, Freie Universität Berlin, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research, Berlin, Germany
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9
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Thirkell T, Cameron D, Hodge A. Contrasting Nitrogen Fertilisation Rates Alter Mycorrhizal Contribution to Barley Nutrition in a Field Trial. FRONTIERS IN PLANT SCIENCE 2019; 10:1312. [PMID: 31736991 PMCID: PMC6831614 DOI: 10.3389/fpls.2019.01312] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2019] [Accepted: 09/20/2019] [Indexed: 05/30/2023]
Abstract
Controlled environment studies show that arbuscular mycorrhizal fungi (AMF) may contribute to plant nitrogen (N) uptake, but the role of these near-ubiquitous symbionts in crop plant N nutrition under natural field conditions remains largely unknown. In a field trial, we tested the effects of N fertilisation and barley (Hordeum vulgare L.) cultivar identity on the contribution of AMF to barley N uptake using 15N tracers added to rhizosphere soil compartments. AMF were shown capable of significantly increasing plant 15N acquisition from root exclusion zones, and this was influenced by nitrogen addition type, N fertiliser application rate and barley cultivar identity. Our data demonstrate a previously overlooked potential route of crop plant N uptake which may be influenced substantially and rapidly in response to shifting agricultural management practices.
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Affiliation(s)
- Tom Thirkell
- Department of Biology, University of York, York, United Kingdom
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield, United Kingdom
| | - Duncan Cameron
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield, United Kingdom
| | - Angela Hodge
- Department of Biology, University of York, York, United Kingdom
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10
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Li Q, Yan L, Ye L, Zhou J, Zhang B, Peng W, Zhang X, Li X. Chinese Black Truffle ( Tuber indicum) Alters the Ectomycorrhizosphere and Endoectomycosphere Microbiome and Metabolic Profiles of the Host Tree Quercus aliena. Front Microbiol 2018; 9:2202. [PMID: 30283422 PMCID: PMC6156548 DOI: 10.3389/fmicb.2018.02202] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2018] [Accepted: 08/28/2018] [Indexed: 01/06/2023] Open
Abstract
Truffles are one group of the most famous ectomycorrhizal fungi in the world. There is little information on the ecological mechanisms of truffle ectomycorrhizal synthesis in vitro. In this study, we investigated the ecological effects of Tuber indicum – Quercus aliena ectomycorrhizal synthesis on microbial communities in the host plant roots and the surrounding soil using high-throughput sequencing and on the metabolic profiles of host plant roots using metabolomics approaches. We observed an increase in the diversity and richness of prokaryotic communities and a decrease in richness of fungal communities in the presence of T. indicum. The microbial community structures in the host roots and the surrounding soil were altered by ectomycorrhizal synthesis in the greenhouse. Bacterial genera Pedomicrobium, Variibacter, and Woodsholea and fungal genera Aspergillus, Phaeoacremonium, and Pochonia were significantly more abundant in ectomycorhizae and the ectomycorrhizosphere soil compared with the corresponding T. indicum-free controls (P < 0.05). Truffle-colonization reduced the abundance of some fungal genera surrounding the host tree, such as Acremonium, Aspergillus, and Penicillium. Putative prokaryotic metabolic functions and fungal functional groups (guilds) were also differentiated by ectomycorrhizal synthesis. The ectomycorrhizal synthesis had great impact on the measured soil physicochemical properties. Metabolic profiling analysis uncovered 55 named differentially abundant metabolites between the ectomycorhizae and the control roots, including 44 upregulated and 11 downregulated metabolites. Organic acids and carbohydrates were two major upregulated metabolites in ectomycorhizae, which were found formed dense interactions with other metabolites, suggesting their crucial roles in sustaining the metabolic functions in the truffle ectomycorrhization system. This study revealed the effects of truffle-colonization on the metabolites of ectomycorrhiza and illustrates an interactive network between truffles, the host plant, soil and associated microbial communities, shedding light on understanding the ecological effects of truffles.
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Affiliation(s)
- Qiang Li
- Soil and Fertilizer Institute, Sichuan Academy of Agricultural Sciences, Chengdu, China.,Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, China
| | - Lijuan Yan
- Aquatic Geomicrobiology, Institute of Biodiversity, Friedrich Schiller University Jena, Jena, Germany
| | - Lei Ye
- Soil and Fertilizer Institute, Sichuan Academy of Agricultural Sciences, Chengdu, China
| | - Jie Zhou
- Soil and Fertilizer Institute, Sichuan Academy of Agricultural Sciences, Chengdu, China
| | - Bo Zhang
- Soil and Fertilizer Institute, Sichuan Academy of Agricultural Sciences, Chengdu, China
| | - Weihong Peng
- Soil and Fertilizer Institute, Sichuan Academy of Agricultural Sciences, Chengdu, China
| | - Xiaoping Zhang
- Soil and Fertilizer Institute, Sichuan Academy of Agricultural Sciences, Chengdu, China
| | - Xiaolin Li
- Soil and Fertilizer Institute, Sichuan Academy of Agricultural Sciences, Chengdu, China
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11
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Bowles TM, Jackson LE, Cavagnaro TR. Mycorrhizal fungi enhance plant nutrient acquisition and modulate nitrogen loss with variable water regimes. GLOBAL CHANGE BIOLOGY 2018; 24:e171-e182. [PMID: 28862782 DOI: 10.1111/gcb.13884] [Citation(s) in RCA: 48] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/21/2017] [Accepted: 08/22/2017] [Indexed: 05/13/2023]
Abstract
Climate change will alter both the amount and pattern of precipitation and soil water availability, which will directly affect plant growth and nutrient acquisition, and potentially, ecosystem functions like nutrient cycling and losses as well. Given their role in facilitating plant nutrient acquisition and water stress resistance, arbuscular mycorrhizal (AM) fungi may modulate the effects of changing water availability on plants and ecosystem functions. The well-characterized mycorrhizal tomato (Solanum lycopersicum L.) genotype 76R (referred to as MYC+) and the mutant mycorrhiza-defective tomato genotype rmc were grown in microcosms in a glasshouse experiment manipulating both the pattern and amount of water supply in unsterilized field soil. Following 4 weeks of differing water regimes, we tested how AM fungi affected plant productivity and nutrient acquisition, short-term interception of a 15NH4+ pulse, and inorganic nitrogen (N) leaching from microcosms. AM fungi enhanced plant nutrient acquisition with both lower and more variable water availability, for instance increasing plant P uptake more with a pulsed water supply compared to a regular supply and increasing shoot N concentration more when lower water amounts were applied. Although uptake of the short-term 15NH4+ pulse was higher in rmc plants, possibly due to higher N demand, AM fungi subtly modulated NO3- leaching, decreasing losses by 54% at low and high water levels in the regular water regime, with small absolute amounts of NO3- leached (<1 kg N/ha). Since this study shows that AM fungi will likely be an important moderator of plant and ecosystem responses to adverse effects of more variable precipitation, management strategies that bolster AM fungal communities may in turn create systems that are more resilient to these changes.
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Affiliation(s)
- Timothy M Bowles
- Department of Environmental Science, Policy and Management, University of California Berkeley, Berkeley, CA, USA
| | - Louise E Jackson
- Department of Land, Air and Water Resources, University of California Davis, Davis, CA, USA
| | - Timothy R Cavagnaro
- The School of Agriculture, Food and Wine, The Waite Research Institute, University of Adelaide, Adelaide, SA, Australia
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Bowles TM, Jackson LE, Loeher M, Cavagnaro TR. Ecological intensification and arbuscular mycorrhizas: a meta‐analysis of tillage and cover crop effects. J Appl Ecol 2016. [DOI: 10.1111/1365-2664.12815] [Citation(s) in RCA: 116] [Impact Index Per Article: 14.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Affiliation(s)
- Timothy M. Bowles
- Department of Environmental Science, Policy and Management University of California Berkeley Berkeley CA 94720 USA
| | - Louise E. Jackson
- Department of Land, Air and Water Resources University of California Davis Davis CA 95616 USA
| | - Malina Loeher
- Department of Land, Air and Water Resources University of California Davis Davis CA 95616 USA
| | - Timothy R. Cavagnaro
- The Waite Research Institute and School of Agriculture, Food and Wine University of Adelaide Waite Campus, PMB1 Glen Osmond SA 5064 Australia
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Bowles TM, Barrios-Masias FH, Carlisle EA, Cavagnaro TR, Jackson LE. Effects of arbuscular mycorrhizae on tomato yield, nutrient uptake, water relations, and soil carbon dynamics under deficit irrigation in field conditions. THE SCIENCE OF THE TOTAL ENVIRONMENT 2016; 566-567:1223-1234. [PMID: 27266519 DOI: 10.1016/j.scitotenv.2016.05.178] [Citation(s) in RCA: 68] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2016] [Revised: 05/10/2016] [Accepted: 05/25/2016] [Indexed: 05/19/2023]
Abstract
Plant strategies to cope with future droughts may be enhanced by associations between roots and soil microorganisms, including arbuscular mycorrhizal (AM) fungi. But how AM fungi affect crop growth and yield, together with plant physiology and soil carbon (C) dynamics, under water stress in actual field conditions is not well understood. The well-characterized mycorrhizal tomato (Solanum lycopersicum L.) genotype 76R (referred to as MYC+) and the mutant nonmycorrhizal tomato genotype rmc were grown in an organic farm with a deficit irrigation regime and control regime that replaced evapotranspiration. AM increased marketable tomato yields by ~25% in both irrigation regimes but did not affect shoot biomass. In both irrigation regimes, MYC+ plants had higher plant nitrogen (N) and phosphorus (P) concentrations (e.g. 5 and 24% higher N and P concentrations in leaves at fruit set, respectively), 8% higher stomatal conductance (gs), 7% higher photosynthetic rates (Pn), and greater fruit set. Stem water potential and leaf relative water content were similar in both genotypes within each irrigation regime. Three-fold higher rates of root sap exudation in detopped MYC+ plants suggest greater capacity for water uptake through osmotic driven flow, especially in the deficit irrigation regime in which root sap exudation in rmc was nearly absent. Soil with MYC+ plants also had slightly higher soil extractable organic C and microbial biomass C at anthesis but no changes in soil CO2 emissions, although the latter were 23% lower under deficit irrigation. This study provides novel, field-based evidence for how indigenous AM fungi increase crop yield and crop water use efficiency during a season-long deficit irrigation and thus play an important role in coping with increasingly limited water availability in the future.
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Affiliation(s)
- Timothy M Bowles
- Department of Land, Air and Water Resources, University of California Davis, Davis, CA 95616, USA.
| | - Felipe H Barrios-Masias
- Department of Agriculture, Nutrition and Veterinary Sciences, University of Nevada, Reno, Reno, NV 89557, USA
| | - Eli A Carlisle
- Department of Land, Air and Water Resources, University of California Davis, Davis, CA 95616, USA
| | - Timothy R Cavagnaro
- School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, PMB 1, Glen Osmond, SA 5065, Australia
| | - Louise E Jackson
- Department of Land, Air and Water Resources, University of California Davis, Davis, CA 95616, USA
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Genre A, Russo G. Does a Common Pathway Transduce Symbiotic Signals in Plant-Microbe Interactions? FRONTIERS IN PLANT SCIENCE 2016; 7:96. [PMID: 26909085 PMCID: PMC4754458 DOI: 10.3389/fpls.2016.00096] [Citation(s) in RCA: 71] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2015] [Accepted: 01/18/2016] [Indexed: 05/02/2023]
Abstract
Recent years have witnessed major advances in our knowledge of plant mutualistic symbioses such as the rhizobium-legume symbiosis (RLS) and arbuscular mycorrhizas (AM). Some of these findings caused the revision of longstanding hypotheses, but one of the most solid theories is that a conserved set of plant proteins rules the transduction of symbiotic signals from beneficial glomeromycetes and rhizobia in a so-called common symbiotic pathway (CSP). Nevertheless, the picture still misses several elements, and a few crucial points remain unclear. How does one common pathway discriminate between - at least - two symbionts? Can we exclude that microbes other than AM fungi and rhizobia also use this pathway to communicate with their host plants? We here discuss the possibility that our current view is biased by a long-lasting focus on legumes, whose ability to develop both AM and RLS is an exception among plants and a recent innovation in their evolution; investigations in non-legumes are starting to place legume symbiotic signaling in a broader perspective. Furthermore, recent studies suggest that CSP proteins act in a wider scenario of symbiotic and non-symbiotic signaling. Overall, evidence is accumulating in favor of distinct activities for CSP proteins in AM and RLS, depending on the molecular and cellular context where they act.
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