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MacColl KA, Tosi M, Chagnon PL, MacDougall AS, Dunfield KE, Maherali H. Prairie restoration promotes the abundance and diversity of mutualistic arbuscular mycorrhizal fungi. ECOLOGICAL APPLICATIONS : A PUBLICATION OF THE ECOLOGICAL SOCIETY OF AMERICA 2024; 34:e2981. [PMID: 38738945 DOI: 10.1002/eap.2981] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/26/2023] [Revised: 01/12/2024] [Accepted: 03/14/2024] [Indexed: 05/14/2024]
Abstract
Predicting how biological communities assemble in restored ecosystems can assist in conservation efforts, but most research has focused on plants, with relatively little attention paid to soil microbial organisms that plants interact with. Arbuscular mycorrhizal (AM) fungi are an ecologically significant functional group of soil microbes that form mutualistic symbioses with plants and could therefore respond positively to plant community restoration. To evaluate the effects of plant community restoration on AM fungi, we compared AM fungal abundance, species richness, and community composition of five annually cultivated, conventionally managed agricultural fields with paired adjacent retired agricultural fields that had undergone prairie restoration 5-9 years prior to sampling. We hypothesized that restoration stimulates AM fungal abundance and species richness, particularly for disturbance-sensitive taxa, and that gains of new taxa would not displace AM fungal species present prior to restoration due to legacy effects. AM fungal abundance was quantified by measuring soil spore density and root colonization. AM fungal species richness and community composition were determined in soils and plant roots using DNA high-throughput sequencing. Soil spore density was 2.3 times higher in restored prairies compared to agricultural fields, but AM fungal root colonization did not differ between land use types. AM fungal species richness was 2.7 and 1.4 times higher in restored prairies versus agricultural fields for soil and roots, respectively. The abundance of Glomeraceae, a disturbance-tolerant family, decreased by 25% from agricultural to restored prairie soils but did not differ in plant roots. The abundance of Claroideoglomeraceae and Diversisporaceae, both disturbance-sensitive families, was 4.6 and 3.2 times higher in restored prairie versus agricultural soils, respectively. Species turnover was higher than expected relative to a null model, indicating that AM fungal species were gained by replacement. Our findings demonstrate that restoration can promote a relatively rapid increase in the abundance and diversity of soil microbial communities that had been degraded by decades of intensive land use, and community compositional change can be predicted by the disturbance tolerance of soil microbial taxonomic and functional groups.
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Affiliation(s)
- Kevin A MacColl
- Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada
| | - Micaela Tosi
- School of Environmental Sciences, University of Guelph, Guelph, Ontario, Canada
| | - Pierre-Luc Chagnon
- Institut de recherche en biologie végétale, Université de Montréal, Montréal, Quebec, Canada
| | - Andrew S MacDougall
- Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada
| | - Kari E Dunfield
- School of Environmental Sciences, University of Guelph, Guelph, Ontario, Canada
| | - Hafiz Maherali
- Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada
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Liu S, Vasar M, Öpik M, Koorem K. Disturbance induces similar shifts in arbuscular mycorrhizal fungal communities from grassland and arable field soils. MYCORRHIZA 2023; 33:153-164. [PMID: 36930376 DOI: 10.1007/s00572-023-01108-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/12/2022] [Accepted: 02/23/2023] [Indexed: 06/08/2023]
Abstract
Anthropogenic disturbances play an increasingly important role in structuring the diversity and functioning of soil organisms such as arbuscular mycorrhizal (AM) fungi. Frequently, multiple land-use practices, which may represent disturbances for AM fungal communities, operate simultaneously in different habitats. It is not known, however, how previous land-use history and specific habitat type influence AM fungal community response to disturbances. We applied mechanical (cutting to stimulate tillage) and chemical (herbicide addition) disturbances to AM fungal communities from meadow and arable field soils. Our results indicated that AM fungal communities from meadows, which previously had experienced mowing, were more species rich than communities from fields that had experienced intensive land-use practices. There were no significant differences, however, in the responses to disturbance of the AM fungal communities from field and meadow soils. We expected mechanical disturbance to promote taxa from the family Glomeraceae which are expected to exhibit a ruderal life-history strategy; instead, the abundance of this family increased in response to chemical disturbance. Simultaneous application of mechanical disturbance and herbicide decreased only the abundance of Diversisporaceae. No AM fungal families increased in abundance when both mechanical and chemical disturbances were applied simultaneously, but all disturbances increased the abundance of culturable AM fungi. Our study demonstrates that although chemical and mechanical forms of disturbance favor different AM fungal families, existing information about family-level characteristics may not adequately characterize the life history strategies of AM fungus species.
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Affiliation(s)
- Siqiao Liu
- Institute of Ecology and Earth Sciences, University of Tartu, 2 J. Liivi Street, 50409, Tartu, Estonia.
| | - Martti Vasar
- Institute of Ecology and Earth Sciences, University of Tartu, 2 J. Liivi Street, 50409, Tartu, Estonia
| | - Maarja Öpik
- Institute of Ecology and Earth Sciences, University of Tartu, 2 J. Liivi Street, 50409, Tartu, Estonia
| | - Kadri Koorem
- Institute of Ecology and Earth Sciences, University of Tartu, 2 J. Liivi Street, 50409, Tartu, Estonia
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Chen K, Zhang J, Muneer MA, Xue K, Niu H, Ji B. Plant community and soil available nutrients drive arbuscular mycorrhizal fungal community shifts during alpine meadow degradation. FUNGAL ECOL 2023. [DOI: 10.1016/j.funeco.2022.101211] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
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González Fradejas G, García de León D, Vasar M, Koorem K, Zobel M, Öpik M, Moora M, Rey Benayas JM. Hedgerows increase the diversity and modify the composition of arbuscular mycorrhizal fungi in Mediterranean agricultural landscapes. MYCORRHIZA 2022; 32:397-407. [PMID: 36087125 PMCID: PMC9561024 DOI: 10.1007/s00572-022-01090-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/29/2022] [Accepted: 09/02/2022] [Indexed: 06/15/2023]
Abstract
Sustainable agriculture is essential to address global challenges such as climate change and biodiversity loss. Hedgerows enhance aboveground biodiversity and provide ecosystem services, but little is known about their impact on soil biota. Arbuscular mycorrhizal (AM) fungi are one of the key components of belowground biodiversity. We compared the diversity and composition of AM fungal communities at four farmland sites located in Central Spain, where 132 soil samples in total were collected to assess soil physical and chemical properties and the AM fungal communities. We compared the richness (number of AM fungal taxa), taxonomic, functional, and phylogenetic diversity, and structure of the AM fungal communities across three farmland habitat types, namely hedgerows, woody crops (olive groves and vineyard), and herbaceous crops (barley, sunflower, and wheat). Our results showed positive effects of hedgerows on most diversity metrics. Almost 60% of the AM fungal taxa were shared among the three farmland habitat types. Hedgerows increased AM fungal taxonomic richness (31%) and alpha diversity (25%), and especially so compared to herbaceous crops (45% and 28%, respectively). Hedgerows harbored elevated proportions of AM fungi with non-ruderal life-history strategies. AM fungal communities were more similar between hedgerows and woody crops than between hedgerows and adjacent herbaceous crops, possibly because of differences in tillage and fertilization. Unexpectedly, hedgerows reduced phylogenetic diversity, which might be related to more selective associations of AM fungi with woody plants than with herbaceous crops. Overall, the results suggest that planting hedgerows contributes to maintain belowground diversity. Thus, European farmers should plant more hedgerows to attain the goals of the EU Biodiversity Strategy for 2030.
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Affiliation(s)
- Guillermo González Fradejas
- Grupo de Ecología y Restauración Forestal (FORECO), Departamento de Ciencias de La Vida, Universidad de Alcalá, Alcalá de Henares, Spain
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - David García de León
- Grupo de Ecología y Restauración Forestal (FORECO), Departamento de Ciencias de La Vida, Universidad de Alcalá, Alcalá de Henares, Spain.
| | - Martti Vasar
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Kadri Koorem
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Martin Zobel
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Maarja Öpik
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Mari Moora
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - José María Rey Benayas
- Grupo de Ecología y Restauración Forestal (FORECO), Departamento de Ciencias de La Vida, Universidad de Alcalá, Alcalá de Henares, Spain
- Fundación Internacional para la Restauración de Ecosistemas, Madrid, Spain
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Qin S, Yang G, Zhang Y, Song M, Sun L, Cui Y, Dong J, Wang N, Liu X, Zheng P, Wang R. Mowing Did Not Alleviate the Negative Effect of Nitrogen Addition on the Arbuscular Mycorrhizal Fungal Community in a Temperate Meadow Grassland. FRONTIERS IN PLANT SCIENCE 2022; 13:917645. [PMID: 35755642 PMCID: PMC9228033 DOI: 10.3389/fpls.2022.917645] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/11/2022] [Accepted: 05/23/2022] [Indexed: 06/15/2023]
Abstract
As nitrogen deposition intensifies under global climate change, understanding the responses of arbuscular mycorrhizal (AM) fungi to nitrogen deposition and the associated mechanisms are critical for terrestrial ecosystems. In this study, the effects of nitrogen addition and mowing on AM fungal communities in soil and mixed roots were investigated in an Inner Mongolia grassland. The results showed that nitrogen addition reduced the α-diversity of AM fungi in soil rather than that of root. Besides, nitrogen addition altered the composition of AM fungal community in soil. Soil pH and inorganic nitrogen content were the main causes of changes in AM fungal communities affected by nitrogen addition. Mowing and the interaction of nitrogen addition and mowing had no significant effect on AM fungal community diversity. In contrast, while mowing may reduce the negative effects of nitrogen addition on the richness and diversity of plants by alleviating light limitation, it could not do so with the negative effects on AM fungal communities. Furthermore, AM fungal communities clustered phylogenetically in all treatments in both soil and roots, indicating that environmental filtering was the main driving force for AM fungal community assembly. Our results highlight the different responses of AM fungi in the soil and roots of a grassland ecosystem to nitrogen addition and mowing. The study will improve our understanding of the effects of nitrogen deposition on the function of ecosystem.
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Affiliation(s)
- Siqi Qin
- School of Life Sciences, Institute of Ecology and Biodiversity, Shandong University, Jinan, China
- Shandong Provincial Engineering and Technology Research Center for Vegetation Ecology, Shandong University, Jinan, China
- Qingdao Forest Ecology Research Station of National Forestry and Grassland Administration, Shandong University, Jinan, China
| | - Guojiao Yang
- School of Life Sciences, Institute of Ecology and Biodiversity, Shandong University, Jinan, China
- College of Ecology and Environment, Hainan University, Haikou, China
| | - Yang Zhang
- School of Life Sciences, Institute of Ecology and Biodiversity, Shandong University, Jinan, China
- Shandong Provincial Engineering and Technology Research Center for Vegetation Ecology, Shandong University, Jinan, China
- Qingdao Forest Ecology Research Station of National Forestry and Grassland Administration, Shandong University, Jinan, China
| | - Meixia Song
- School of Life Sciences, Institute of Ecology and Biodiversity, Shandong University, Jinan, China
- Shandong Provincial Engineering and Technology Research Center for Vegetation Ecology, Shandong University, Jinan, China
- Qingdao Forest Ecology Research Station of National Forestry and Grassland Administration, Shandong University, Jinan, China
| | - Lu Sun
- School of Life Sciences, Institute of Ecology and Biodiversity, Shandong University, Jinan, China
- Shandong Provincial Engineering and Technology Research Center for Vegetation Ecology, Shandong University, Jinan, China
- Qingdao Forest Ecology Research Station of National Forestry and Grassland Administration, Shandong University, Jinan, China
| | - Yangzhe Cui
- School of Life Sciences, Institute of Ecology and Biodiversity, Shandong University, Jinan, China
- Shandong Provincial Engineering and Technology Research Center for Vegetation Ecology, Shandong University, Jinan, China
- Qingdao Forest Ecology Research Station of National Forestry and Grassland Administration, Shandong University, Jinan, China
| | - Jibin Dong
- School of Life Sciences, Institute of Ecology and Biodiversity, Shandong University, Jinan, China
- Shandong Provincial Engineering and Technology Research Center for Vegetation Ecology, Shandong University, Jinan, China
- Qingdao Forest Ecology Research Station of National Forestry and Grassland Administration, Shandong University, Jinan, China
| | - Ning Wang
- School of Life Sciences, Institute of Ecology and Biodiversity, Shandong University, Jinan, China
- Shandong Provincial Engineering and Technology Research Center for Vegetation Ecology, Shandong University, Jinan, China
- Qingdao Forest Ecology Research Station of National Forestry and Grassland Administration, Shandong University, Jinan, China
| | - Xiao Liu
- School of Life Sciences, Institute of Ecology and Biodiversity, Shandong University, Jinan, China
- Shandong Provincial Engineering and Technology Research Center for Vegetation Ecology, Shandong University, Jinan, China
- Qingdao Forest Ecology Research Station of National Forestry and Grassland Administration, Shandong University, Jinan, China
| | - Peiming Zheng
- School of Life Sciences, Institute of Ecology and Biodiversity, Shandong University, Jinan, China
- Shandong Provincial Engineering and Technology Research Center for Vegetation Ecology, Shandong University, Jinan, China
- Qingdao Forest Ecology Research Station of National Forestry and Grassland Administration, Shandong University, Jinan, China
| | - Renqing Wang
- School of Life Sciences, Institute of Ecology and Biodiversity, Shandong University, Jinan, China
- Shandong Provincial Engineering and Technology Research Center for Vegetation Ecology, Shandong University, Jinan, China
- Qingdao Forest Ecology Research Station of National Forestry and Grassland Administration, Shandong University, Jinan, China
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Kajihara KT, Egan CP, Swift SOI, Wall CB, Muir CD, Hynson NA. Core arbuscular mycorrhizal fungi are predicted by their high abundance-occupancy relationship while host-specific taxa are rare and geographically structured. THE NEW PHYTOLOGIST 2022; 234:1464-1476. [PMID: 35218016 DOI: 10.1111/nph.18058] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/06/2022] [Accepted: 02/16/2022] [Indexed: 06/14/2023]
Abstract
Habitat restoration may depend on the recovery of plant microbial symbionts such as arbuscular mycorrhizal (AM) fungi, but this requires a better understanding of the rules that govern their community assembly. We examined the interactions of soil and host-associated AM fungal communities between remnant and restored patches of subtropical montane forests. While AM fungal richness did not differ between habitat types, community membership did and was influenced by geography, habitat and host. These differences were largely driven by rare host-specific AM fungi that displayed near-complete turnover between forest types, while core AM fungal taxa were highly abundant and ubiquitous. The bipartite networks in the remnant forest were more specialized and hosts more specific than in the restored forest. Host-associated AM fungal communities nested within soil communities in both habitats, but only significantly so in the restored forest. Our results provide evidence that restored and remnant forests harbour the same core fungal symbionts, while rare host-specific taxa differ, and that geography, host identity and taxonomic resolution strongly affect the observed distribution patterns of these fungi. We suggest that host-specific interactions with AM fungi, as well as spatial processes, should be explicitly considered to effectively re-establish target host and symbiont communities.
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Affiliation(s)
- Kacie T Kajihara
- Pacific Biosciences Research Center, University of Hawai'i at Mānoa, 1993 East-West Road, Honolulu, HI, 96822, USA
| | - Cameron P Egan
- Pacific Biosciences Research Center, University of Hawai'i at Mānoa, 1993 East-West Road, Honolulu, HI, 96822, USA
- Department of Biology, Okanagan College, 1000 KLO Road, Kelowna, BC, VIY 4X8, Canada
| | - Sean O I Swift
- Pacific Biosciences Research Center, University of Hawai'i at Mānoa, 1993 East-West Road, Honolulu, HI, 96822, USA
| | - Christopher B Wall
- Pacific Biosciences Research Center, University of Hawai'i at Mānoa, 1993 East-West Road, Honolulu, HI, 96822, USA
- Biological Sciences, University of California San Diego, 9500 Gilman Dr, La Jolla, CA, 92093, USA
| | - Christopher D Muir
- School of Life Sciences, University of Hawai'i at Mānoa, 2538 McCarthy Mall, Honolulu, HI, 96822, USA
| | - Nicole A Hynson
- Pacific Biosciences Research Center, University of Hawai'i at Mānoa, 1993 East-West Road, Honolulu, HI, 96822, USA
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Albornoz FE, Ryan MH, Bending GD, Hilton S, Dickie IA, Gleeson DB, Standish RJ. Agricultural land-use favours Mucoromycotinian, but not Glomeromycotinian, arbuscular mycorrhizal fungi across ten biomes. THE NEW PHYTOLOGIST 2022; 233:1369-1382. [PMID: 34618929 DOI: 10.1111/nph.17780] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/08/2021] [Accepted: 09/19/2021] [Indexed: 05/26/2023]
Abstract
Globally, agricultural land-use negatively affects soil biota that contribute to ecosystem functions such as nutrient cycling, yet arbuscular mycorrhizal fungi (AMF) are promoted as essential components of agroecosystems. Arbuscular mycorrhizal fungi include Glomeromycotinian AMF (G-AMF) and the arbuscule-producing fine root endophytes, recently re-classified into the Endogonales order within Mucoromycotina. The correct classification of Mucoromycotinian AMF (M-AMF) and the availability of new molecular tools can guide research to better the understanding of their diversity and ecology. To investigate the impact on G-AMF and M-AMF of agricultural land-use at a continental scale, we sampled DNA from paired farm and native sites across 10 Australian biomes. Glomeromycotinian AMF were present in both native and farm sites in all biomes. Putative M-AMF were favoured by farm sites, rare or absent in native sites, and almost entirely absent in tropical biomes. Temperature, rainfall, and soil pH were strong drivers of richness and community composition of both groups, and plant richness was an important mediator. Both fungal groups occupy different, but overlapping, ecological niches, with M-AMF thriving in temperate agricultural landscapes. Our findings invite exploration of the origin and spread of M-AMF and continued efforts to resolve the phylogeny of this newly reclassified group of AMF.
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Affiliation(s)
- Felipe E Albornoz
- Commonwealth Scientific and Industrial Research Organisation, Land and Water, Wembley, WA, 6913, Australia
- Institute of Agriculture, UWA School of Agriculture and Environment, The University of Western Australia, 35 Stirling Hwy, Crawley (Perth), WA, 6009, Australia
| | - Megan H Ryan
- Institute of Agriculture, UWA School of Agriculture and Environment, The University of Western Australia, 35 Stirling Hwy, Crawley (Perth), WA, 6009, Australia
| | - Gary D Bending
- School of Life Sciences, University of Warwick, Coventry, CV4 7AL, UK
| | - Sally Hilton
- School of Life Sciences, University of Warwick, Coventry, CV4 7AL, UK
| | - Ian A Dickie
- Bio-Protection Research Centre, School of Biological Science, University of Canterbury, Christchurch, 8041, New Zealand
| | - Deirdre B Gleeson
- Institute of Agriculture, UWA School of Agriculture and Environment, The University of Western Australia, 35 Stirling Hwy, Crawley (Perth), WA, 6009, Australia
| | - Rachel J Standish
- Harry Butler Institute, Murdoch University, 90 South Street, Murdoch, WA, 6150, Australia
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Aavik T, Träger S, Zobel M, Honnay O, Van Geel M, Bueno CG, Koorem K. The joint effect of host plant genetic diversity and arbuscular mycorrhizal fungal communities on restoration success. Funct Ecol 2021. [DOI: 10.1111/1365-2435.13914] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Tsipe Aavik
- Department of Botany Institute of Ecology and Earth Sciences University of Tartu Tartu Estonia
| | - Sabrina Träger
- Department of Botany Institute of Ecology and Earth Sciences University of Tartu Tartu Estonia
- Institute of Biology/Geobotany and Botanical Garden Martin‐Luther‐University Halle‐Wittenberg Halle (Saale) Germany
| | - Martin Zobel
- Department of Botany Institute of Ecology and Earth Sciences University of Tartu Tartu Estonia
| | - Olivier Honnay
- Plant Conservation and Population Biology Biology Department University of Leuven Heverlee Belgium
| | - Maarten Van Geel
- Plant Conservation and Population Biology Biology Department University of Leuven Heverlee Belgium
| | - C. Guillermo Bueno
- Department of Botany Institute of Ecology and Earth Sciences University of Tartu Tartu Estonia
| | - Kadri Koorem
- Department of Botany Institute of Ecology and Earth Sciences University of Tartu Tartu Estonia
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Ceola G, Goss-Souza D, Alves J, Alves da Silva A, Stürmer SL, Baretta D, Sousa JP, Klauberg-Filho O. Biogeographic Patterns of Arbuscular Mycorrhizal Fungal Communities Along a Land-Use Intensification Gradient in the Subtropical Atlantic Forest Biome. MICROBIAL ECOLOGY 2021; 82:942-960. [PMID: 33656687 DOI: 10.1007/s00248-021-01721-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2020] [Accepted: 02/14/2021] [Indexed: 06/12/2023]
Abstract
Information concerning arbuscular mycorrhizal (AM) fungal geographical distribution in tropical and subtropical soils from the Atlantic Forest (a global hotspot of biodiversity) are scarce and often restricted to the evaluation of richness and abundance of AM fungal species at specific ecosystems or local landscapes. In this study, we hypothesized that AM fungal diversity and community composition in subtropical soils would display fundamental differences in their geographical patterns, shaped by spatial distance and land-use change, at local and regional scales. AM fungal community composition was examined by spore-based taxonomic analysis, using soil trap cultures. Acaulospora koskei and Glomus were found as generalists, regardless of mesoregions and land uses. Other Acaulospora species were also found generalists within mesoregions. Land-use change and intensification did not influence AM fungal composition, partially rejecting our first hypothesis. We then calculated the distance-decay of similarities among pairs of AM fungal communities and the distance-decay relationship within and over mesoregions. We also performed the Mantel test and redundancy analysis to discriminate the main environmental drivers of AM fungal diversity and composition turnover. Overall, we found significant distance-decays for all land uses. We also observed a distance-decay relationship within the mesoregion scale (< 104 km) and these changes were correlated mainly to soil type (not land use), with the secondary influence of both total organic carbon and clay contents. AM fungal species distribution presented significant distance-decays, regardless of land uses, which was indicative of dispersal limitation, a stochastic neutral process. Although, we found evidence that, coupled with dispersal limitation, niche differentiation also played a role in structuring AM fungal communities, driven by long-term historical contingencies, as represented by soil type, resulting from different soil origin and mineralogy across mesoregions.
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Affiliation(s)
- Gessiane Ceola
- Department of Soils and Natural Resources, Santa Catarina State University, Lages, SC, 88520-000, Brazil
| | - Dennis Goss-Souza
- Department of Soils and Natural Resources, Santa Catarina State University, Lages, SC, 88520-000, Brazil
| | - Joana Alves
- Centre for Functional Ecology, Department of Life Sciences, University of Coimbra, Calçada Martim de Freitas, Coimbra, 3000-456, Portugal
| | - António Alves da Silva
- Centre for Functional Ecology, Department of Life Sciences, University of Coimbra, Calçada Martim de Freitas, Coimbra, 3000-456, Portugal
| | - Sidney Luiz Stürmer
- Departament of Natural Sciences, Regional University of Blumenau, Blumenau, SC, 89030-903, Brazil
| | - Dilmar Baretta
- Department of Soils and Sustainability, Santa Catarina State University, Chapecó, SC, 89815-630, Brazil
| | - José Paulo Sousa
- Centre for Functional Ecology, Department of Life Sciences, University of Coimbra, Calçada Martim de Freitas, Coimbra, 3000-456, Portugal
| | - Osmar Klauberg-Filho
- Department of Soils and Natural Resources, Santa Catarina State University, Lages, SC, 88520-000, Brazil.
- Agroveterinary Centre, Santa Catarina State University, Av. Luis de Camões, 2090, Lages, SC, 88520-000, Brazil.
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10
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Liu S, Moora M, Vasar M, Zobel M, Öpik M, Koorem K. Arbuscular mycorrhizal fungi promote small-scale vegetation recovery in the forest understorey. Oecologia 2021; 197:685-697. [PMID: 34716490 DOI: 10.1007/s00442-021-05065-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2021] [Accepted: 10/17/2021] [Indexed: 11/26/2022]
Abstract
Root-associating arbuscular mycorrhizal (AM) fungi foster vegetation recovery in degraded habitats. AM fungi increase nutrient availability for host plants; therefore, their importance is expected to be higher when nutrient availability is low. However, little is known about how small-scale variation in nutrient availability influences plant and AM fungal communities in a stable ecosystem. We conducted a 2-year field study in the understorey of a boreonemoral forest where we examined plant and AM fungal communities at microsites (15 cm diameter) with intact vegetation cover and at disturbed microsites where vegetation was cleared away and soil was sterilized to remove soil biota. We manipulated soil nutrient content (increased with fertilizer, unchanged, or decreased with sucrose addition) and fungal activity (natural or suppressed by fungicide addition) at these microsites. After two vegetation seasons, manipulations with nutrient content resulted in significant, although moderate, differences in the content of soil nutrients (e.g. in soil phosphorus). Suppression of fungal activity resulted in lower richness, abundance and phylogenetic diversity of AM fungal community, independently of microsite type and soil fertility level. Plant species richness and diversity decreased when fungal activity was suppressed at disturbed but not in intact microsites. The correlation between plant and AM fungal communities was not influenced by microsite type or soil fertility. We conclude that small-scale variation in soil fertility and habitat integrity does not influence the interactions between plants and AM fungi. The richness, but not composition, of AM fungal communities recovered fast after small-scale disturbance and supported the recovery of species-rich vegetation.
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Affiliation(s)
- Siqiao Liu
- Department of Botany, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia.
| | - Mari Moora
- Department of Botany, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Martti Vasar
- Department of Botany, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Martin Zobel
- Department of Botany, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Maarja Öpik
- Department of Botany, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Kadri Koorem
- Department of Botany, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
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Marczylo EL, Macchiarulo S, Gant TW. Metabarcoding of Soil Fungi from Different Urban Greenspaces Around Bournemouth in the UK. ECOHEALTH 2021; 18:315-330. [PMID: 34089413 PMCID: PMC8626400 DOI: 10.1007/s10393-021-01523-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/17/2020] [Revised: 12/22/2020] [Accepted: 01/31/2021] [Indexed: 05/20/2023]
Abstract
Soil microbes are important for public health. Increasing urbanisation is adversely affecting soil microbiota, which may be contributing to the global rise of immune-related diseases. Fungi are key components of urban environments that can be negatively impacted by altered land-use, land-management and climate change, and are implicated in the development and exacerbation of non-communicable diseases such as allergy, asthma and chronic inflammatory conditions. Fungal metagenomics is building knowledge on fungi within different environments (the environmental mycobiome), fungi on and within the human body (the human mycobiome), and their association with disease. Here, we demonstrate the added value of a multi-region metabarcoding approach to analyse soil mycobiomes from five urban greenspaces (lawns, parklands, bareground, young forest and old forest). While results were comparable across the three regions (ITS1, ITS2 and LSU), each identified additional fungal taxa that were unique to the region. Combining the results therefore provided a more comprehensive analysis across all fungal taxonomic ranks, identifying statistically significant differences in the fungal composition of the five soil types. Assignment of fungal taxa into ecological guilds revealed those differences of biological relevance to public health. The greatest differences were between the soil mycobiome of lawns and forests. Of most concern was the significant increase in the known human allergens Alternaria, Bipolaris, Cladosporium and Fusarium within urban lawn and parkland vs forest soils. By improving our understanding of local variations in fungal taxa across urban greenspaces, we have the potential to boost the health of local residents through improved urban planning.
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Affiliation(s)
- Emma L Marczylo
- Toxicology Department, Centre for Radiation, Chemical and Environmental Hazards, Public Health England, Harwell Campus, Chilton, Oxfordshire, OX11 0RQ, UK.
| | - Sameirah Macchiarulo
- Toxicology Department, Centre for Radiation, Chemical and Environmental Hazards, Public Health England, Harwell Campus, Chilton, Oxfordshire, OX11 0RQ, UK
| | - Timothy W Gant
- Toxicology Department, Centre for Radiation, Chemical and Environmental Hazards, Public Health England, Harwell Campus, Chilton, Oxfordshire, OX11 0RQ, UK
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12
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Davison J, García de León D, Zobel M, Moora M, Bueno CG, Barceló M, Gerz M, León D, Meng Y, Pillar VD, Sepp SK, Soudzilovaskaia NA, Tedersoo L, Vaessen S, Vahter T, Winck B, Öpik M. Plant functional groups associate with distinct arbuscular mycorrhizal fungal communities. THE NEW PHYTOLOGIST 2020; 226:1117-1128. [PMID: 31943225 DOI: 10.1111/nph.16423] [Citation(s) in RCA: 43] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/12/2019] [Accepted: 12/24/2019] [Indexed: 05/26/2023]
Abstract
The benefits of the arbuscular mycorrhizal (AM) symbiosis between plants and fungi are modulated by the functional characteristics of both partners. However, it is unknown to what extent functionally distinct groups of plants naturally associate with different AM fungi. We reanalysed 14 high-throughput sequencing data sets describing AM fungal communities associating with plant individuals (2427) belonging to 297 species. We examined how root-associating AM fungal communities varied between plants with different growth forms, photosynthetic pathways, CSR (competitor, stress-tolerator, ruderal) strategies, mycorrhizal statuses and N-fixing statuses. AM fungal community composition differed in relation to all studied plant functional groups. Grasses, C4 and nonruderal plants were characterised by high AM fungal alpha diversity, while C4 , ruderal and obligately mycorrhizal plants were characterised by high beta diversity. The phylogenetic diversity of AM fungi, a potential surrogate for functional diversity, was higher among forbs than other plant growth forms. Putatively ruderal (previously cultured) AM fungi were disproportionately associated with forbs and ruderal plants. There was phylogenetic correlation among AM fungi in the degree of association with different plant growth forms and photosynthetic pathways. Associated AM fungal communities constitute an important component of plant ecological strategies. Functionally different plants associate with distinct AM fungal communities, linking mycorrhizal associations with functional diversity in ecosystems.
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Affiliation(s)
- John Davison
- Institute of Ecology and Earth Sciences, University of Tartu, Lai 40, Tartu, 51005, Estonia
| | - David García de León
- Institute of Ecology and Earth Sciences, University of Tartu, Lai 40, Tartu, 51005, Estonia
- Department of Life Sciences, University of Alcalá, Alcalá de Henares, 28805, Spain
| | - Martin Zobel
- Institute of Ecology and Earth Sciences, University of Tartu, Lai 40, Tartu, 51005, Estonia
- College of Science, King Saud University, Riyadh, 11451, Kingdom of Saudi Arabia
| | - Mari Moora
- Institute of Ecology and Earth Sciences, University of Tartu, Lai 40, Tartu, 51005, Estonia
| | - C Guillermo Bueno
- Institute of Ecology and Earth Sciences, University of Tartu, Lai 40, Tartu, 51005, Estonia
| | - Milagros Barceló
- Environmental Biology Department, Institute of Environmental Sciences Leiden University, Einsteinweg 2, Leiden, 2333CC, the Netherlands
| | - Maret Gerz
- Institute of Ecology and Earth Sciences, University of Tartu, Lai 40, Tartu, 51005, Estonia
| | - Daniela León
- Institute of Ecology and Earth Sciences, University of Tartu, Lai 40, Tartu, 51005, Estonia
| | - Yiming Meng
- Institute of Ecology and Earth Sciences, University of Tartu, Lai 40, Tartu, 51005, Estonia
| | - Valerio D Pillar
- Department of Ecology, Universidade Federal do Rio Grande do Sul, 9500, Porto Alegre, 91501-970, Brazil
| | - Siim-Kaarel Sepp
- Institute of Ecology and Earth Sciences, University of Tartu, Lai 40, Tartu, 51005, Estonia
| | - Nadejda A Soudzilovaskaia
- Environmental Biology Department, Institute of Environmental Sciences Leiden University, Einsteinweg 2, Leiden, 2333CC, the Netherlands
| | - Leho Tedersoo
- Natural History Museum, University of Tartu, Vanemuise 46, Tartu, 51014, Estonia
| | - Stijn Vaessen
- Environmental Biology Department, Institute of Environmental Sciences Leiden University, Einsteinweg 2, Leiden, 2333CC, the Netherlands
| | - Tanel Vahter
- Institute of Ecology and Earth Sciences, University of Tartu, Lai 40, Tartu, 51005, Estonia
| | - Bruna Winck
- Department of Ecology, Universidade Federal do Rio Grande do Sul, 9500, Porto Alegre, 91501-970, Brazil
| | - Maarja Öpik
- Institute of Ecology and Earth Sciences, University of Tartu, Lai 40, Tartu, 51005, Estonia
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13
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Li X, Xu M, Li X, Christie P, Wagg C, Zhang J. Linkages between changes in plant and mycorrhizal fungal community composition at high versus low elevation in alpine ecosystems. ENVIRONMENTAL MICROBIOLOGY REPORTS 2020; 12:229-240. [PMID: 32052588 DOI: 10.1111/1758-2229.12827] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/15/2019] [Revised: 01/06/2020] [Accepted: 01/08/2020] [Indexed: 05/09/2023]
Abstract
Arbuscular mycorrhizal fungi (AMF) play an important role in maintaining plant diversity and productivity in grassland ecosystems. However, very few studies have investigated how AMF and plant communities co-vary between contrasting environments in natural ecosystems. Intensive sampling (50 soil samples) was conducted in natural open grasslands at both 3570 and 4556 m on Mount Segrila on the Southeast Tibetan Plateau. We used 454-pyrosequencing to investigate soil AMF communities and to explore relationships between AMF diversity and plant richness, productivity and community composition. AMF diversity was negatively correlated with plant richness at 3570 m but positively at 4556 m. Differences in AMF community composition between elevations were attributable to plant community composition, soil pH and available phosphorus concentration. The AMF community was more phylogenetically clustered at the higher elevation than the lower elevation. However, greater phylogenetic clustering (under dispersion) of AMF communities at the two elevations was positively correlated with above-ground biomass. Our results indicate that plant community composition and environmental filtering are the primary drivers structuring the AMF community. Phylogenetic relatedness may be important in explaining the function of AMF communities in alpine ecosystems.
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Affiliation(s)
- Xiaoliang Li
- Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, 571101, China
- Key Laboratory of Crop Gene Resources and Germplasm Enhancement in Southern China, Ministry of Agriculture, Haikou, 571101, China
| | - Meng Xu
- Key Laboratory of Ecosystem Network Observation and Modeling, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, 100101, China
| | - Xiaolin Li
- College of Resources and Environmental Sciences, Centre for Resources, Environment and Food Security, China Agricultural University, Beijing, 100193, China
| | - Peter Christie
- College of Resources and Environmental Sciences, Centre for Resources, Environment and Food Security, China Agricultural University, Beijing, 100193, China
| | - Cameron Wagg
- Fredericton Research and Development Center, Agriculture and Agri-Food Canada, Fredericton, New Brunswick, E3B4Z7, Canada
| | - Junling Zhang
- College of Resources and Environmental Sciences, Centre for Resources, Environment and Food Security, China Agricultural University, Beijing, 100193, China
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14
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Vázquez-Santos Y, Castillo-Argüero S, Martínez-Orea Y, Sánchez-Gallen I, Vega-Frutis R, Camargo-Ricalde SL, Hernández-Cuevas LV. The reproductive phenology of Acaena elongata and its relation with arbuscular mycorrhizal fungi. Symbiosis 2019. [DOI: 10.1007/s13199-019-00629-z] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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15
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Soil Physicochemical Properties and the Rhizosphere Soil Fungal Community in a Mulberry (Morus alba L.)/Alfalfa (Medicago sativa L.) Intercropping System. FORESTS 2019. [DOI: 10.3390/f10020167] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
A better understanding of soil fungal communities is very useful in revealing the effects of an agroforestry system and would also help us to understand the fungi-mediated effects of agricultural practices on the processes of soil nutrient cycling and crop productivity. Compared to conventional monoculture farming, agroforestry systems have obvious advantages in improving land use efficiency and maintaining soil physicochemical properties, reducing losses of water, soil material, organic matter, and nutrients, as well as ensuring the stability of yields. In this study, we attempted to investigate the impact of a mulberry/alfalfa intercropping system on the soil physicochemical properties and the rhizosphere fungal characteristics (such as the diversity and structure of the fungal community), and to analyze possible correlations among the planting pattern, the soil physicochemical factors, and the fungal community structure. In the intercropping and monoculture systems, we determined the soil physicochemical properties using chemical analysis and the fungal community structure with MiSeq sequencing of the fungal ITS1 region. The results showed that intercropping significantly improved the soil physicochemical properties of alfalfa (total nitrogen, alkaline hydrolysable nitrogen, available potassium, and total carbon contents). Sequencing results showed that the dominant taxonomic groups were Ascomycota, Basidiomycota, and Mucoromycota. Intercropping increased the fungal richness of mulberry and alfalfa rhizosphere soils and improved the fungal diversity of mulberry. The diversity and structure of the fungal community were predominantly influenced by both the planting pattern and soil environmental factors (total nitrogen, total phosphate, and total carbon). Variance partitioning analysis showed that the planting pattern explained 25.9% of the variation of the fungal community structure, and soil environmental factors explained 63.1% of the variation. Planting patterns and soil physicochemical properties conjointly resulted in changes of the soil fungal community structure in proportion.
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Arbuscular mycorrhizal fungal communities in tropical rain forest are resilient to slash-and-burn agriculture. JOURNAL OF TROPICAL ECOLOGY 2018. [DOI: 10.1017/s0266467418000184] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Abstract:Certain forestry and agricultural practices are known to affect arbuscular mycorrhizal (AM) fungal communities, but the effects of deforestation – including slash-and-burn management and other more severe disturbances – in tropical rain forests are poorly understood. We addressed the effects of anthropogenic disturbance on rain-forest AM fungal communities in French Guiana, by comparing mature tropical rain forest, slash-and-burn (5 y old) and clearcut areas (8 y old). A total of 36 soil samples were collected in six plots and sequenced using a high throughput 454-pyrosequencing platform. A total of 32649 sequences from 103 AM fungal virtual taxa (VT) were recorded. Whereas alpha diversity of AM fungi did not decrease due to land-use intensification, with average richness ranging from 17 to 21 taxa per plot, beta diversity (average distance to multivariate centroid) dropped by 28% from 0.46 in rain forest to 0.33 under clearcutting. AM fungal community composition was correlated with land use and soil chemical properties. Clearcut areas were characterized by the more frequent occurrence of specialist AM fungi, compared with mature forest or slash-and-burn areas. Specifically, clearcuts contained the highest proportions of VT that were geographic (21%), habitat (31%), abundance (97%) or host (97%) specialists based on VT metadata contained in the MaarjAM database. This suggests that certain AM fungi with narrow ecological niches have traits that allow them to exploit conditions of severe disturbance. In conclusion, slash-and-burn management appears to allow diverse AM fungal communities to persist, and may favour regeneration of tropical rain forest after abandonment. More severe disturbance in the form of clearcutting resulted in marked changes in AM fungal communities.
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