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Nguyen NL, Van Dung V, Van Tung N, Nguyen TKL, Quan ND, Giang TTH, Ngan NTT, Hien NT, Nguyen HH. Draft genome sequencing of halotolerant bacterium Salinicola sp. DM10 unravels plant growth-promoting potentials. 3 Biotech 2023; 13:416. [PMID: 38009164 PMCID: PMC10667196 DOI: 10.1007/s13205-023-03833-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2022] [Accepted: 10/24/2023] [Indexed: 11/28/2023] Open
Abstract
In this study, strain DM10 was isolated from mangrove roots and characterized as a halotolerant plant growth-promoting bacterium. Strain DM10 exhibited the ability to solubilize phosphate, produce siderophore, show 1-aminocyclopropane-1-carboxylic acid deaminase activity, and hydrolyze starch. The rice plants subjected to a treatment of NaCl (200 mM) and inoculated with strain DM10 showed an improvement in the shoot length, root length, and dried weight, when compared to those exposed solely to saline treatment. The comprehensive genome sequencing of strain DM10 revealed a genome spanning of 4,171,745 bp, harboring 3626 protein coding sequences. Within its genome, strain DM10 possesses genes responsible for both salt-in and salt-out strategies, indicative of a robust genetic adaptation aimed at fostering salt tolerance. Additionally, the genome encodes genes involved in phosphate solubilization, such as the synthesis of gluconic acid, high-affinity phosphate transport systems, and alkaline phosphatase. In the genome of DM10, we identified the acdS gene, responsible for encoding 1-aminocyclopropane-1-carboxylate deaminase, as well as the amy1A gene, which encodes α-amylase. Furthermore, the genome of DM10 contains sequences associated with the iron (3+)-hydroxamate and iron uptake clusters, responsible for siderophore production. Such data provide a deep understanding of the mechanism employed by strain DM10 to combat osmotic and salinity stress, facilitate plant growth, and elucidate its molecular-level behaviors.
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Affiliation(s)
- Ngoc-Lan Nguyen
- Institute of Genome Research, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet Str., Cau Giay, Hanoi Vietnam
- Graduate of Science and Technology, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet Str., Cau Giay, Hanoi Vietnam
| | - Vu Van Dung
- Institute of Genome Research, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet Str., Cau Giay, Hanoi Vietnam
- Graduate of Science and Technology, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet Str., Cau Giay, Hanoi Vietnam
| | - Nguyen Van Tung
- Institute of Genome Research, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet Str., Cau Giay, Hanoi Vietnam
- Graduate of Science and Technology, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet Str., Cau Giay, Hanoi Vietnam
| | - Thi Kim Lien Nguyen
- Institute of Genome Research, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet Str., Cau Giay, Hanoi Vietnam
| | - Nguyen Duc Quan
- Institute of Genome Research, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet Str., Cau Giay, Hanoi Vietnam
| | - Tran Thi Huong Giang
- Institute of Genome Research, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet Str., Cau Giay, Hanoi Vietnam
| | - Nguyen Thi Thanh Ngan
- Institute of Genome Research, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet Str., Cau Giay, Hanoi Vietnam
- Graduate of Science and Technology, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet Str., Cau Giay, Hanoi Vietnam
| | - Nguyen Thanh Hien
- Institute of Genome Research, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet Str., Cau Giay, Hanoi Vietnam
| | - Huy-Hoang Nguyen
- Institute of Genome Research, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet Str., Cau Giay, Hanoi Vietnam
- Graduate of Science and Technology, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet Str., Cau Giay, Hanoi Vietnam
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Farooqi ZUR, Qadir AA, Alserae H, Raza A, Mohy-Ud-Din W. Organic amendment-mediated reclamation and build-up of soil microbial diversity in salt-affected soils: fostering soil biota for shaping rhizosphere to enhance soil health and crop productivity. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023; 30:109889-109920. [PMID: 37792186 DOI: 10.1007/s11356-023-30143-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/16/2023] [Accepted: 09/25/2023] [Indexed: 10/05/2023]
Abstract
Soil salinization is a serious environmental problem that affects agricultural productivity and sustainability worldwide. Organic amendments have been considered a practical approach for reclaiming salt-affected soils. In addition to improving soil physical and chemical properties, organic amendments have been found to promote the build-up of new halotolerant bacterial species and microbial diversity, which plays a critical role in maintaining soil health, carbon dynamics, crop productivity, and ecosystem functioning. Many reported studies have indicated the development of soil microbial diversity in organic amendments amended soil. But they have reported only the development of microbial diversity and their identification. This review article provides a comprehensive summary of the current knowledge on the use of different organic amendments for the reclamation of salt-affected soils, focusing on their effects on soil properties, microbial processes and species, development of soil microbial diversity, and microbial processes to tolerate salinity levels and their strategies to cope with it. It also discusses the factors affecting the microbial species developments, adaptation and survival, and carbon dynamics. This review is based on the concept of whether addition of specific organic amendment can promote specific halotolerant microbe species, and if it is, then which amendment is responsible for each microbial species' development and factors responsible for their survival in saline environments.
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Affiliation(s)
- Zia Ur Rahman Farooqi
- Institute of Soil and Environmental Sciences, University of Agriculture Faisalabad, Faisalabad, 38040, Pakistan.
| | - Ayesha Abdul Qadir
- Institute of Soil and Environmental Sciences, University of Agriculture Faisalabad, Faisalabad, 38040, Pakistan
| | - Hussein Alserae
- Department of Soil Sciences and Water Resources, College of Agricultural Engineering Science, Baghdad University, Baghdad, Iraq
| | - Ali Raza
- Institute of Soil and Environmental Sciences, University of Agriculture Faisalabad, Faisalabad, 38040, Pakistan
| | - Waqas Mohy-Ud-Din
- Institute of Soil and Environmental Sciences, University of Agriculture Faisalabad, Faisalabad, 38040, Pakistan
- Department of Soil and Environmental Sciences, Ghazi University, Dera Ghazi Khan, 32200, Pakistan
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Sharma A, Singh RN, Song XP, Singh RK, Guo DJ, Singh P, Verma KK, Li YR. Genome analysis of a halophilic Virgibacillus halodenitrificans ASH15 revealed salt adaptation, plant growth promotion, and isoprenoid biosynthetic machinery. Front Microbiol 2023; 14:1229955. [PMID: 37808307 PMCID: PMC10556750 DOI: 10.3389/fmicb.2023.1229955] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2023] [Accepted: 07/31/2023] [Indexed: 10/10/2023] Open
Abstract
Globally, due to widespread dispersion, intraspecific diversity, and crucial ecological components of halophilic ecosystems, halophilic bacteria is considered one of the key models for ecological, adaptative, and biotechnological applications research in saline environments. With this aim, the present study was to enlighten the plant growth-promoting features and investigate the systematic genome of a halophilic bacteria, Virgibacillus halodenitrificans ASH15, through single-molecule real-time (SMRT) sequencing technology. Results showed that strain ASH15 could survive in high salinity up to 25% (w/v) NaCl concentration and express plant growth-promoting traits such as nitrogen fixation, plant growth hormones, and hydrolytic enzymes, which sustain salt stress. The results of pot experiment revealed that strain ASH15 significantly enhanced sugarcane plant growth (root shoot length and weight) under salt stress conditions. Moreover, the sequencing analysis of the strain ASH15 genome exhibited that this strain contained a circular chromosome of 3,832,903 bp with an average G+C content of 37.54%: 3721 predicted protein-coding sequences (CDSs), 24 rRNA genes, and 62 tRNA genes. Genome analysis revealed that the genes related to the synthesis and transport of compatible solutes (glycine, betaine, ectoine, hydroxyectoine, and glutamate) confirm salt stress as well as heavy metal resistance. Furthermore, functional annotation showed that the strain ASH15 encodes genes for root colonization, biofilm formation, phytohormone IAA production, nitrogen fixation, phosphate metabolism, and siderophore production, which are beneficial for plant growth promotion. Strain ASH15 also has a gene resistance to antibiotics and pathogens. In addition, analysis also revealed that the genome strain ASH15 has insertion sequences and CRISPRs, which suggest its ability to acquire new genes through horizontal gene transfer and acquire immunity to the attack of viruses. This work provides knowledge of the mechanism through which V. halodenitrificans ASH15 tolerates salt stress. Deep genome analysis, identified MVA pathway involved in biosynthesis of isoprenoids, more precisely "Squalene." Squalene has various applications, such as an antioxidant, anti-cancer agent, anti-aging agent, hemopreventive agent, anti-bacterial agent, adjuvant for vaccines and drug carriers, and detoxifier. Our findings indicated that strain ASH15 has enormous potential in industries such as in agriculture, pharmaceuticals, cosmetics, and food.
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Affiliation(s)
- Anjney Sharma
- Key Laboratory of Sugarcane Biotechnology and Genetic Improvement, Ministry of Agriculture, Sugarcane Research Center, Chinese Academy of Agricultural Sciences, Guangxi Academy of Agricultural Sciences (GXXAS), Nanning, Guangxi, China
- Guangxi Key Laboratory of Sugarcane Genetic Improvement, Sugarcane Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, Guangxi, China
| | - Ram Nageena Singh
- Department of Chemical and Biological Engineering, South Dakota School of Mines and Technology, Rapid City, SD, United States
| | - Xiu-Peng Song
- Guangxi Key Laboratory of Sugarcane Genetic Improvement, Sugarcane Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, Guangxi, China
| | - Rajesh Kumar Singh
- Key Laboratory of Sugarcane Biotechnology and Genetic Improvement, Ministry of Agriculture, Sugarcane Research Center, Chinese Academy of Agricultural Sciences, Guangxi Academy of Agricultural Sciences (GXXAS), Nanning, Guangxi, China
- Guangxi Key Laboratory of Sugarcane Genetic Improvement, Sugarcane Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, Guangxi, China
| | - Dao-Jun Guo
- Key Laboratory of Sugarcane Biotechnology and Genetic Improvement, Ministry of Agriculture, Sugarcane Research Center, Chinese Academy of Agricultural Sciences, Guangxi Academy of Agricultural Sciences (GXXAS), Nanning, Guangxi, China
- Guangxi Key Laboratory of Sugarcane Genetic Improvement, Sugarcane Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, Guangxi, China
- State Key Laboratory of Conservation and Utilization of Subtropical, College of Agriculture, Agro-Bioresources, Guangxi University, Nanning, Guangxi, China
| | - Pratiksha Singh
- Key Laboratory of Sugarcane Biotechnology and Genetic Improvement, Ministry of Agriculture, Sugarcane Research Center, Chinese Academy of Agricultural Sciences, Guangxi Academy of Agricultural Sciences (GXXAS), Nanning, Guangxi, China
- Guangxi Key Laboratory of Sugarcane Genetic Improvement, Sugarcane Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, Guangxi, China
| | - Krishan K. Verma
- Key Laboratory of Sugarcane Biotechnology and Genetic Improvement, Ministry of Agriculture, Sugarcane Research Center, Chinese Academy of Agricultural Sciences, Guangxi Academy of Agricultural Sciences (GXXAS), Nanning, Guangxi, China
- Guangxi Key Laboratory of Sugarcane Genetic Improvement, Sugarcane Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, Guangxi, China
| | - Yang-Rui Li
- Key Laboratory of Sugarcane Biotechnology and Genetic Improvement, Ministry of Agriculture, Sugarcane Research Center, Chinese Academy of Agricultural Sciences, Guangxi Academy of Agricultural Sciences (GXXAS), Nanning, Guangxi, China
- Guangxi Key Laboratory of Sugarcane Genetic Improvement, Sugarcane Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, Guangxi, China
- State Key Laboratory of Conservation and Utilization of Subtropical, College of Agriculture, Agro-Bioresources, Guangxi University, Nanning, Guangxi, China
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Pérez-Inocencio J, Iturriaga G, Aguirre-Mancilla CL, Ramírez-Pimentel JG, Vásquez-Murrieta MS, Álvarez-Bernal D. Identification of Halophilic and Halotolerant Bacteria from the Root Soil of the Halophyte Sesuvium verrucosum Raf. PLANTS (BASEL, SWITZERLAND) 2022; 11:3355. [PMID: 36501394 PMCID: PMC9740589 DOI: 10.3390/plants11233355] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/01/2022] [Revised: 11/14/2022] [Accepted: 11/28/2022] [Indexed: 06/17/2023]
Abstract
Soil salinity is a condition that limits crop growth and productivity, and soil-dwelling bacteria from halophytic plant roots may be a viable strategy to cope with low productivity due to salt stress. Halophilic and halotolerant bacteria of the root soil of Sesuvium verrucosum were analyzed in this study as there is little evidence regarding its associated microbiology. Soil was sampled from the roots of Sesuvium verrucosum to obtain the cultivable bacteria. Their morphological characteristics were identified and they were molecularly identified by the 16S sequence. The growth capacity of the bacteria was determined at different levels of pH and salinity, and several growth promotion characteristics were identified, such as phosphorus solubilization, indole acetic acid production by the tryptophan-dependent (AIAt) and tryptophan-independent (IAA) pathways, ammonium production from organic sources, solubilization of carbonates, and zinc and sodium capture capacity. In addition, the bacteria that presented the best characteristics for germination variables of Solanum lycopersicum were evaluated. A total of 20 bacteria from root soil of Sesuvium verrucosum Raf. belonging to the phyla Proteobacteria (50%), Firmicutes (45%) and Actinobacteria (5%) were identified, with each one having different morphological characteristics. Among the bacterial isolates, 45% had the ability to resist different levels of salinity and pH, ranging from 0 to 20% of NaCl, and pH between 5 and 11. Moreover, these bacteria had the capacity to solubilize carbonates, phosphorus and zinc, capture sodium, produce ammonium from organic substrates and IAA (indole acetic acid), and promote enzymatic activity of amylases, proteases, lipases and cellulases. The bacteria evaluated on the germination of Solanum lycopersicum had an influence on germination at different salinity levels, with greater influence at 100 mM NaCl. This demonstrated that halophilic bacteria belonging to the rhizosphere of Sesuvium verrucosum have the ability to promote growth in extreme salinity conditions, making them candidates for the recovery of productivity in saline soils.
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Affiliation(s)
| | | | | | | | | | - Dioselina Álvarez-Bernal
- Instituto Politécnico Nacional, Centro Interdisciplinario de Investigación para el Desarrollo Integral Regional Unidad Michoacán (CIIDIR-Michoacán), Jiquilpan 59510, Mexico
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Khan A, Ali S, Khan M, Hamayun M, Moon YS. Parthenium hysterophorus's Endophytes: The Second Layer of Defense against Biotic and Abiotic Stresses. Microorganisms 2022; 10:2217. [PMID: 36363809 PMCID: PMC9696505 DOI: 10.3390/microorganisms10112217] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2022] [Revised: 11/07/2022] [Accepted: 11/08/2022] [Indexed: 09/10/2023] Open
Abstract
Parthenium hysterophorus L. is considered an obnoxious weed due to its rapid dispersal, fast multiplications, and agricultural and health hazards. In addition to its physio-molecular and phytotoxic allelochemical usage, this weed most probably uses endophytic flora as an additional line of defense to deal with stressful conditions and tolerate both biotic and abiotic stresses. The aim of this article is to report the diversity of endophytic flora (fungi and bacteria) in P. hysterophorus and their role in the stress mitigation (biotic and abiotic) of other important crops. Various endophytes were reported from P. hysterophorus and their roles in crops evaluated under biotic and abiotic stressed conditions. These endophytes have the potential to alleviate different stresses by improving crops/plants growth, development, biomass, and photosynthetic and other physiological traits. The beneficial role of the endophytes may be attributed to stress-modulating enzymes such as the antioxidants SOD, POD and APX and ACC deaminases. Additionally, the higher production of different classes of bioactive secondary metabolites, i.e., flavonoids, proline, and glutathione may also overcome tissue damage to plants under stressed conditions. Interestingly, a number of medicinally important phytochemicals such as anhydropseudo-phlegmcin-9, 10-quinone-3-amino-8-O methyl ether 'anhydropseudophlegmacin-9, 10-quinone-3-amino-8-Omethyl ether were reported from the endophytic flora of P. hysterophorus. Moreover, various reports revealed that fungal and bacterial endophytes of P. hysterophorus enhance plant growth-promoting attributes and could be added to the consortium of biofertilizers.
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Affiliation(s)
- Asif Khan
- Laboratory of Phytochemistry, Department of Botany, University of São Paulo, São Paulo 05508-090, Brazil
| | - Sajid Ali
- Department of Horticulture and Life Science, Yeungnam University, Gyeongsan 712-749, Korea
| | - Murtaza Khan
- Department of Horticulture and Life Science, Yeungnam University, Gyeongsan 712-749, Korea
| | - Muhammad Hamayun
- Department of Botany, Garden Campus, Abdul Wali Khan University Mardan, Mardan 23200, Pakistan
| | - Yong-Sun Moon
- Department of Horticulture and Life Science, Yeungnam University, Gyeongsan 712-749, Korea
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Tripathi A, Pandey P, Tripathi SN, Kalra A. Perspectives and potential applications of endophytic microorganisms in cultivation of medicinal and aromatic plants. FRONTIERS IN PLANT SCIENCE 2022; 13:985429. [PMID: 36247631 PMCID: PMC9560770 DOI: 10.3389/fpls.2022.985429] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/03/2022] [Accepted: 09/07/2022] [Indexed: 06/16/2023]
Abstract
Ensuring food and nutritional security, it is crucial to use chemicals in agriculture to boost yields and protect the crops against biotic and abiotic perturbations. Conversely, excessive use of chemicals has led to many deleterious effects on the environment like pollution of soil, water, and air; loss of soil fertility; and development of pest resistance, and is now posing serious threats to biodiversity. Therefore, farming systems need to be upgraded towards the use of biological agents to retain agricultural and environmental sustainability. Plants exhibit a huge and varied niche for endophytic microorganisms inside the planta, resulting in a closer association between them. Endophytic microorganisms play pivotal roles in plant physiological and morphological characteristics, including growth promotion, survival, and fitness. Their mechanism of action includes both direct and indirect, such as mineral phosphate solubilization, fixating nitrogen, synthesis of auxins, production of siderophore, and various phytohormones. Medicinal and aromatic plants (MAPs) hold a crucial position worldwide for their valued essential oils and several phytopharmaceutically important bioactive compounds since ancient times; conversely, owing to the high demand for natural products, commercial cultivation of MAPs is on the upswing. Furthermore, the vulnerability to various pests and diseases enforces noteworthy production restraints that affect both crop yield and quality. Efforts have been made towards enhancing yields of plant crude drugs by improving crop varieties, cell cultures, transgenic plants, etc., but these are highly cost-demanding and time-consuming measures. Thus, it is essential to evolve efficient, eco-friendly, cost-effective simpler approaches for improvement in the yield and health of the plants. Harnessing endophytic microorganisms as biostimulants can be an effective and alternative step. This review summarizes the concept of endophytes, their multidimensional interaction inside the host plant, and the salient benefits associated with endophytic microorganisms in MAPs.
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Affiliation(s)
- Arpita Tripathi
- Microbial Technology Department, CSIR-Central Institute of Medicinal and Aromatic Plants, Lucknow, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, India
- Faculty of Education, Teerthanker Mahaveer University, Moradabad, India
| | - Praveen Pandey
- Microbial Technology Department, CSIR-Central Institute of Medicinal and Aromatic Plants, Lucknow, India
- Division of Plant Breeding and Genetic Resource Conservation, CSIR-Central Institute of Medicinal and Aromatic Plants, Lucknow, India
| | - Shakti Nath Tripathi
- Department of Botany, Nehru Gram Bharati Deemed to be University, Prayagraj, India
| | - Alok Kalra
- Microbial Technology Department, CSIR-Central Institute of Medicinal and Aromatic Plants, Lucknow, India
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Najafi Zilaie M, Mosleh Arani A, Etesami H, Dinarvand M. Improved salinity and dust stress tolerance in the desert halophyte Haloxylon aphyllum by halotolerant plant growth-promoting rhizobacteria. FRONTIERS IN PLANT SCIENCE 2022; 13:948260. [PMID: 35991408 PMCID: PMC9382590 DOI: 10.3389/fpls.2022.948260] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/19/2022] [Accepted: 07/04/2022] [Indexed: 06/15/2023]
Abstract
Because of global warming, desertification is increasing. One of the best strategies for combating desertification is reforestation of forests and biological operations of vegetation. However, events like soil salinity and dust storms, as the most important manifestations of desertification, prevent vegetation from settling in these areas. In this study, the effects of two halotolerant plant growth-promoting rhizobacterial strains, Bacillus pumilus HR and Zhihengliuella halotolerans SB, on physiological and nutritional status of the desert halophyte Haloxylon aphyllum under the stress of salinity (0, 300, and 600 mM NaCl) and dust (0 and 1.5 g m-2 month-1) were examined. Under dust application, the Z. halotolerans SB strain compared to the B. pumilus HR strain and the combination of these two bacterial strains improved the content of total chlorophyll (247 and 316%), carotenoid (94 and 107%), phosphorus (113 and 209%), magnesium (196 and 212%), and total dry biomass (13 and 28%) in H. aphyllum at salinity levels of 300 and 600 mM NaCl, respectively. Under conditions of combined application of dust and salinity, B. pumilus HR compared to Z. halotolerans SB and the combination of two strains at salinity levels of 300 and 600 mM NaCl, respectively, had better performance in increasing the content of iron (53 and 69%), calcium (38 and 161%), and seedling quality index (95 and 56%) in H. aphyllum. The results also showed that both bacterial strains and their combination were able to reduce the content of ascorbic acid, flavonoid, total phenol, proline, and malondialdehyde, and catalase activity, and ultimately improve the antioxidant capacity of H. aphyllum. This showed that the use of halotolerant rhizobacteria can stop the production of free radicals and thus prevent cell membrane damage and the formation of malondialdehyde under salinity and dust stress. The results of this study for the first time showed that halotolerant rhizobacteria can increase the seedling quality index of H. aphyllum under combined conditions of salinity and dust. The use of these bacteria can be useful in the optimal afforestation of H. aphyllum species in arid and semi-arid ecosystems.
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Affiliation(s)
- Mahmood Najafi Zilaie
- Department of Environmental Sciences, Faculty of Natural Resources, Yazd University, Yazd, Iran
| | - Asghar Mosleh Arani
- Department of Environmental Sciences, Faculty of Natural Resources, Yazd University, Yazd, Iran
| | - Hassan Etesami
- Department of Soil Science, University of Tehran, Karaj, Iran
| | - Mehri Dinarvand
- Forests and Rangelands Research Department, Khuzestan Agricultural and Natural Resources Research and Education Center, Agricultural Research Education and Extension Organization (AREEO), Ahvaz, Iran
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Zhu N, Meng T, Li S, Yu C, Tang D, Wang Y, Leng F, Ma J. Improved growth and metabolite accumulation in Codonopsis pilosula (Franch.) Nannf. by inoculation with the endophytic Geobacillu sp. RHBA19 and Pseudomonas fluorescens RHBA17. JOURNAL OF PLANT PHYSIOLOGY 2022; 274:153718. [PMID: 35598432 DOI: 10.1016/j.jplph.2022.153718] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/20/2021] [Revised: 05/07/2022] [Accepted: 05/09/2022] [Indexed: 06/15/2023]
Abstract
In this study, we focused on the plant-growth-promoting properties of two strains isolated from Codonopsis pilosula, and the effect of inoculation with different strain treatments on physiological and metabolite accumulation of C. pilosula. The strains RHBA19 and RHBA17 were isolated and identified as Geobacillu sp. and Pseudomonas fluorescens, respectively. The two strains produced indole acetic acid (IAA), siderophore, biofilm, and various exoenzymes. Based on the pot experiments, inoculation of RHBA19 (G group) and the two mixed bacteria (M group) significantly improved the growth, root development, and photosynthesis of C. pilosula. Compared with the no-inoculation group (CK), the total polysaccharide content of root in the G and M groups was dramatically enhanced by 59.27% and 96.07%, and the lobetyolin (root) improved by 58.4% and 66.0%, respectively. After inoculation with bacteria agents, the activities of antioxidant enzymes (CAT, POD, SOD) of C. pilosula increased differentially. Inoculation with two types of bacterial agents significantly increased the activities of sucrose synthase (SS) and sucrose phosphate synthase (SPS) in root, and phenylalanine ammonia lyase (PAL) in leaf of C. pilosula. In addition, the content of signaling molecules (NO and H2O2) in three types of tissue increased significantly. The magnitude of these results was higher with mixtures than with individual strains. These results imply that the two types of bacterial agents induce physiological metabolism changes to accumulate polysaccharides and lobetyolin by regulating stress resistance enzymes and signal molecules, especially NO and H2O2.
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Affiliation(s)
- Ning Zhu
- School of Life Science and Engineering, Lanzhou University of Technology, Lanzhou, 730050, China
| | - Tongtong Meng
- School of Petrochemical Engineering, Lanzhou University of Technology, Lanzhou, 730050, China
| | - Shaowei Li
- Lhasa National Ecological Research Station, Key Laboratory of Ecosystem Network Observation and Modelling, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, 100101, China
| | - Chenqun Yu
- Lhasa National Ecological Research Station, Key Laboratory of Ecosystem Network Observation and Modelling, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, 100101, China
| | - Dan Tang
- School of Life Science and Engineering, Lanzhou University of Technology, Lanzhou, 730050, China.
| | - Yonggang Wang
- School of Life Science and Engineering, Lanzhou University of Technology, Lanzhou, 730050, China.
| | - Feifan Leng
- School of Life Science and Engineering, Lanzhou University of Technology, Lanzhou, 730050, China
| | - Jianzhong Ma
- School of Life Science and Engineering, Lanzhou University of Technology, Lanzhou, 730050, China
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Khumairah FH, Setiawati MR, Fitriatin BN, Simarmata T, Alfaraj S, Ansari MJ, Enshasy HAE, Sayyed RZ, Najafi S. Halotolerant Plant Growth-Promoting Rhizobacteria Isolated From Saline Soil Improve Nitrogen Fixation and Alleviate Salt Stress in Rice Plants. Front Microbiol 2022; 13:905210. [PMID: 35770168 PMCID: PMC9236307 DOI: 10.3389/fmicb.2022.905210] [Citation(s) in RCA: 18] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2022] [Accepted: 04/13/2022] [Indexed: 01/11/2023] Open
Abstract
Salinity is one of the most damaging abiotic stresses due to climate change impacts that affect the growth and yield of crops, especially in lowland rice fields and coastal areas. This research aimed to isolate potential halotolerant plant growth-promoting rhizobacteria from different rhizo-microbiome and use them as effective bioinoculants to improve rice growth under salinity stress conditions. Bioassay using rice seedlings was performed in a randomized block design consisting of 16 treatments (control and 15 bacterial isolates) with three replications. Results revealed that isolates S3, S5, and S6 gave higher shoot height, root length, and plant dry weight compared with control (without isolates). Based on molecular characteristics, isolates S3 and S5 were identified as Pseudomonas stutzeri and Klebsiella pneumonia. These isolates were able to promote rice growth under salinity stress conditions as halotolerant plant growth-promoting rhizobacteria. These three potent isolates were found to produce indole-3-acetic acid and nitrogenase.
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Affiliation(s)
- Fiqriah Hanum Khumairah
- Department of Soil Science, University of Padjadjaran, Jatinangor, Indonesia
- Department of Forestry Management, State Agricultural Polytechnic of Samarinda, Samarinda, Indonesia
| | | | | | - Tualar Simarmata
- Department of Soil Science, University of Padjadjaran, Jatinangor, Indonesia
| | - Saleh Alfaraj
- Department of Zoology, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Mohammad Javed Ansari
- Department of Botany, Hindu College Moradabad, Mahatma Jyotiba Phule Rohilkhand University Bareilly, Bareilly, India
| | - Hesham A. El Enshasy
- Universiti Teknologi Malaysia (UTM), Institute of Bioproduct Development (IBD), Skudai, Malaysia
- Universiti Teknologi Malaysia (UTM), School of Chemical and Energy Engineering, Faculty of Engineering, Skudai, Malaysia
- City of Scientific Research and Technology Applications (SRTA), Alexandria, Egypt
| | - R. Z. Sayyed
- Department of Microbiology, PSGVP Mandal’s S I Patil Arts, G B Patel Science, and STKVS Commerce College, Shahada, India
- Department of Entomology, Asian PGPR Society for Sustainable Agriculture, Auburn University, Auburn, AL, United States
| | - Solmaz Najafi
- Department of Field Crops, Faculty of Agriculture, Van Yüzüncü Yıl University, Van, Turkey
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10
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Zhang C, Zhou X, Wang X, Ge J, Cai B. Elaeagnus angustifolia can improve salt-alkali soil and the health level of soil: Emphasizing the driving role of core microbial communities. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2022; 305:114401. [PMID: 34974219 DOI: 10.1016/j.jenvman.2021.114401] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/01/2021] [Revised: 12/23/2021] [Accepted: 12/26/2021] [Indexed: 06/14/2023]
Abstract
Saline-alkali environments are widely distributed in China and significantly hinder the development of agriculture. This study characterizes the long-term effects of planting Elaeagnus angustifolia (E. angustifolia) on the physical and chemical properties, enzyme activities and microbial community characteristics of saline-alkali soil in the Songnen Plain (1, 2 and 3 years). The results showed that planting E. angustifolia reduced soil pH and electrical conductivity (EC) and increased soil total phosphorus (TP), total nitrogen (TN), nitrate nitrogen (Nni), total potassium (TK), dissolved organic C (DOC), dissolved organic matter (DOM) and available potassium (AK) content and catalase, urease, polyphenol oxidase, phosphatase, sucrase and cellulase enzyme activities, and the results peaked in the 3 year. High-throughput sequencing showed that the bacterial abundance and diversity were as follows (from high to low) y3 > y2 > y1 > CK. E. angustifolia resulted in an increase in the relative abundance of the dominant bacteria. Proteobacteria and Pseudomonas were the major phylum and genus, respectively. Redundancy analysis showed that changes in the soil microbial community significantly affect the physical and chemical properties of the soil, with Proteobacteria members being the key microorganisms that reduce soil salinity. Network analysis showed that Pseudomonas (Proteobacteria) participated in the synthesis of key soil enzymes. 16S rRNA sequencing predicted that the expression of genes related to carbon (rbcL, acsA, acsB, Pcc and accA) and nitrogen (amoA/B, nxrA, hao, gdh, ureC and nosZ) transformation increased, and Pseudomonas members were key regulators of carbon and nitrogen dynamics. In conclusion, the planting of E. angustifolia could improve the physical and chemical properties of the soil by releasing root exudates into the soil and increasing the diversity and richness of soil microbial communities to improve saline-alkali soil, providing a theoretical basis for improving saline-alkali soil and promoting the sustainable development of modern agriculture.
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Affiliation(s)
- Chi Zhang
- Engineering Research Center of Agricultural Microbiology Technology, Ministry of Education, Heilongjiang University, Harbin, 150500, China; Key Laboratory of Microbiology, College of Heilongjiang Province, School of Life Sciences, Heilongjiang University, Harbin, 150080, China
| | - Xiaohang Zhou
- College of Basic Medicine, Mudanjiang Medical University, Mudanjiang, 157000, China
| | - Xiaoyu Wang
- Engineering Research Center of Agricultural Microbiology Technology, Ministry of Education, Heilongjiang University, Harbin, 150500, China; Key Laboratory of Microbiology, College of Heilongjiang Province, School of Life Sciences, Heilongjiang University, Harbin, 150080, China
| | - Jingping Ge
- Engineering Research Center of Agricultural Microbiology Technology, Ministry of Education, Heilongjiang University, Harbin, 150500, China; Key Laboratory of Microbiology, College of Heilongjiang Province, School of Life Sciences, Heilongjiang University, Harbin, 150080, China.
| | - Baiyan Cai
- Engineering Research Center of Agricultural Microbiology Technology, Ministry of Education, Heilongjiang University, Harbin, 150500, China; Key Laboratory of Microbiology, College of Heilongjiang Province, School of Life Sciences, Heilongjiang University, Harbin, 150080, China.
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11
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The Role of Plant Growth-Promoting Rhizobacteria (PGPR) in Mitigating Plant’s Environmental Stresses. APPLIED SCIENCES-BASEL 2022. [DOI: 10.3390/app12031231] [Citation(s) in RCA: 47] [Impact Index Per Article: 23.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
Phytoremediation is a cost-effective and sustainable technology used to clean up pollutants from soils and waters through the use of plant species. Indeed, plants are naturally capable of absorbing metals and degrading organic molecules. However, in several cases, the presence of contaminants causes plant suffering and limited growth. In such situations, thanks to the production of specific root exudates, plants can engage the most suitable bacteria able to support their growth according to the particular environmental stress. These plant growth-promoting rhizobacteria (PGPR) may facilitate plant growth and development with several beneficial effects, even more evident when plants are grown in critical environmental conditions, such as the presence of toxic contaminants. For instance, PGPR may alleviate metal phytotoxicity by altering metal bioavailability in soil and increasing metal translocation within the plant. Since many of the PGPR are also hydrocarbon oxidizers, they are also able to support and enhance plant biodegradation activity. Besides, PGPR in agriculture can be an excellent support to counter the devastating effects of abiotic stress, such as excessive salinity and drought, replacing expensive inorganic fertilizers that hurt the environment. A better and in-depth understanding of the function and interactions of plants and associated microorganisms directly in the matrix of interest, especially in the presence of persistent contamination, could provide new opportunities for phytoremediation.
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12
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Jiang Y, Li Q, Mao W, Tang W, White JF, Li H. Endophytic bacterial community of Stellera chamaejasme L. and its role in improving host plants' competitiveness in grasslands. Environ Microbiol 2022; 24:3322-3333. [PMID: 35001475 DOI: 10.1111/1462-2920.15897] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2021] [Revised: 01/03/2022] [Accepted: 01/05/2022] [Indexed: 01/02/2023]
Abstract
Stellera chamaejasme has become a problematic weed in northern and south-western grasslands of China. To evaluate a possible role of endophytes in its strong competitive capacity, the endophytic bacterial community of S. chamaejasme was investigated by culture-dependent and independent methods, and the growth-promoting traits of some culturable isolates as well as the benefit of endophyte ST3CS3 (Brevundimonas sp.) on host plants growth were studied. The results showed that 823 OTUs were generated with a 97% similarity level in the culture-independent study. They were classified into 29 phyla, 61 classes, 147 orders, 237 families and 440 genera. Among them, Pseudomonas and Ralstonia were the most dominant genera in belowground parts (G) (64.25%) and aboveground parts (S) (26.54%) respectively. The diversity and species richness of endophytes in S were significantly higher than that of G (P < 0.001, t-test). Contrary to this, the number of culturable bacteria in S was a little lower than that of G (P > 0.05, t-test). Totally, 176 isolates belonging to 30 morphotypes were obtained in the culture-dependent study. Among them, Acinetobacter was the most dominant genus in G (51.30%), then followed by Pseudomonas (6.09%) and Brevundimonas (6.09%), while Lysinibacillus (21.31%) was the most dominant genus in S, followed by Pseudomonas (11.48%). Growth-promoting trait tests indicated that 93.65% of the tested isolates (63) exhibited nitrogen-fixing, IAA-synthesizing, phosphorus or potassium solubilizing capacity, in which 77.97% belonged to Proteobacteria, a phylum found to contain more active isolates. Pot experiments demonstrated that endophyte ST3CS3 can significantly improve host plants growth and increase its nitrogen and chlorophyll content (P < 0.01, t-test). Therefore, we suggest that strong competitiveness of S. chamaejasme may in part be due to possession of high ratios of plant growth-promoting proteobacterial endophytes such as Pseudomonas, Acinetobacter and Brevundimonas.
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Affiliation(s)
- Yuejuan Jiang
- Medical School of Kunming University of Science and Technology, Kunming, 650500, China
| | - Qiaohong Li
- The First People's Hospital of Yunnan Province, Kunming, 650032, China
| | - Wenqin Mao
- Medical School of Kunming University of Science and Technology, Kunming, 650500, China
| | - Wengting Tang
- Medical School of Kunming University of Science and Technology, Kunming, 650500, China
| | - James F White
- Department of Plant Biology, Rutgers University, New Brunswick, NJ, 08901, USA
| | - Haiyan Li
- Medical School of Kunming University of Science and Technology, Kunming, 650500, China
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13
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Kapadia C, Patel N, Rana A, Vaidya H, Alfarraj S, Ansari MJ, Gafur A, Poczai P, Sayyed RZ. Evaluation of Plant Growth-Promoting and Salinity Ameliorating Potential of Halophilic Bacteria Isolated From Saline Soil. FRONTIERS IN PLANT SCIENCE 2022; 13:946217. [PMID: 35909789 PMCID: PMC9335293 DOI: 10.3389/fpls.2022.946217] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2022] [Accepted: 06/17/2022] [Indexed: 05/09/2023]
Abstract
Among the biotic and abiotic stress affecting the physical, chemical, and biological properties of soil, salinity is a major threat that leads to the desertification of cultivable land throughout the world. The existence of diverse and versatile microbial populations inhabiting the nutrient-rich soil and varied soil conditions affects the soil dynamism. A normal soil constitutes 600 million bacteria belonging to about 20,000 species, which is reduced to 1 million with 5,000-8,000 species in stress conditions. Plant growth-promoting rhizobacteria (PGPR) are in symbiotic association with the plant system, which helps in combating the abiotic stress and increases the overall productivity and yield. These microorganisms are actively associated with varied cellular communication processes through quorum sensing and secondary metabolites such as the production of Indole-3-acetic acid (IAA), exopolysaccharide (EPS) siderophore, ammonia, ACC deaminase, and solubilization of phosphate. The present study focused on the isolation, identification, and characterization of the microorganisms isolated from the seacoast of Dandi, Navsari. Twelve isolates exhibited PGP traits at a high salt concentration of 15-20%. AD9 isolate identified as Bacillus halotolerans showed a higher ammonia production (88 ± 1.73 μg/mL) and phosphate solubilization (86 ± 3.06 μg/mL) at 15% salt concentration, while AD32* (Bacillus sp. clone ADCNO) gave 42.67 ±1.20 μg/mL IAA production at 20% salt concentration. AD2 (Streptomyces sp. clone ADCNB) and AD26 (Achromobacter sp. clone ADCNI) showed ACC deaminase activity of 0.61 ± 0.12 and 0.60 ± 0.04 nM α-ketobutyrate/mg protein/h, respectively. AD32 (Bacillus sp. clone ADCNL) gave a high siderophore activity of 65.40 ± 1.65%. These isolates produced salinity ameliorating traits, total antioxidant activities, and antioxidant enzymes viz. superoxide dismutase (SOD), Glutathione oxidase (GSH), and catalase (CAT). Inoculation of the multipotent isolate that produced PGP traits and salinity ameliorating metabolites promoted the plant growth and development in rice under salinity stress conditions. These results in 50% more root length, 25.00% more plant dry weight, and 41% more tillers compared to its control.
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Affiliation(s)
- Chintan Kapadia
- Department of Plant Molecular Biology and Biotechnology, ASPEE College of Horticulture and Forestry, Navsari Agricultural University, Navsari, India
| | - Nafisa Patel
- Naran Lala College of Professional and Applied Sciences, Navsari, India
- *Correspondence: Nafisa Patel
| | - Ankita Rana
- Naran Lala College of Professional and Applied Sciences, Navsari, India
| | - Harihar Vaidya
- Department of Plant Molecular Biology and Biotechnology, ASPEE College of Horticulture and Forestry, Navsari Agricultural University, Navsari, India
| | - Saleh Alfarraj
- Zoology Department, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Mohammad Javed Ansari
- Department of Botany, Hindu College (Mahatma Jyotiba Phule Rohilkhand University Bareilly), Moradabad, India
| | - Abdul Gafur
- Sinarmas Forestry Corporate Research and Development, Perawang, Indonesia
| | - Peter Poczai
- Finnish Museum of Natural History, University of Helsinki, Helsinki, Finland
- Peter Poczai
| | - R. Z. Sayyed
- Department of Entomology, Asian PGPR Society for Sustainable Agriculture, Auburn University, Auburn, AL, United States
- Department of Microbiology, PSGVP Mandal's‘S I Patil Arts, G B Patel Science, and STKV Sangh Commerce College, Shahada, India
- R. Z. Sayyed
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14
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Egamberdieva D, Alimov J, Shurigin V, Alaylar B, Wirth S, Bellingrath-Kimura SD. Diversity and Plant Growth-Promoting Ability of Endophytic, Halotolerant Bacteria Associated with Tetragonia tetragonioides (Pall.) Kuntze. PLANTS (BASEL, SWITZERLAND) 2021; 11:plants11010049. [PMID: 35009054 PMCID: PMC8747539 DOI: 10.3390/plants11010049] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/02/2021] [Revised: 12/14/2021] [Accepted: 12/22/2021] [Indexed: 05/24/2023]
Abstract
The diversity of salt-tolerant cultivable endophytic bacteria associated with the halophyte New Zealand spinach (Tetragonia tetragonioides (Pall.) Kuntze) was studied, and their plant beneficial properties were evaluated. The bacteria isolated from leaves and roots belonged to Agrobacterium, Stenotrophomonas, Bacillus, Brevibacterium, Pseudomonas, Streptomyces, Pseudarthrobacter, Raoultella, Curtobacterium, and Pantoea. Isolates exhibited plant growth-promoting traits, including the production of a phytohormone (indole 3-acetic-acid), cell wall degrading enzymes, and hydrogen cyanide production. Furthermore, antifungal activity against the plant pathogenic fungi Fusarium solani, F. oxysporum, and Verticillium dahliae was detected. Ten out of twenty bacterial isolates were able to synthesize ACC deaminase, which plays a vital role in decreasing ethylene levels in plants. Regardless of the origin of isolated bacteria, root or leaf tissue, they stimulated plant root and shoot growth under 200 mM NaCl conditions. Our study suggests that halophytes such as New Zealand spinach are a promising source for isolating halotolerant plant-beneficial bacteria, which can be considered as potentially efficient biofertilizers in the bioremediation of salt-affected soils.
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Affiliation(s)
- Dilfuza Egamberdieva
- Leibniz Centre for Agricultural Landscape Research (ZALF), 15374 Muncheberg, Germany; (S.W.); (S.D.B.-K.)
- Faculty of Biology, National University of Uzbekistan, Tashkent 100174, Uzbekistan; (J.A.); (V.S.)
| | - Jakhongir Alimov
- Faculty of Biology, National University of Uzbekistan, Tashkent 100174, Uzbekistan; (J.A.); (V.S.)
| | - Vyacheslav Shurigin
- Faculty of Biology, National University of Uzbekistan, Tashkent 100174, Uzbekistan; (J.A.); (V.S.)
| | - Burak Alaylar
- Department of Molecular Biology and Genetics, Faculty of Arts and Sciences, Agri Ibrahim Cecen University, Agri 04100, Turkey;
| | - Stephan Wirth
- Leibniz Centre for Agricultural Landscape Research (ZALF), 15374 Muncheberg, Germany; (S.W.); (S.D.B.-K.)
| | - Sonoko Dorothea Bellingrath-Kimura
- Leibniz Centre for Agricultural Landscape Research (ZALF), 15374 Muncheberg, Germany; (S.W.); (S.D.B.-K.)
- Faculty of Life Science, Humboldt University of Berlin, 10115 Berlin, Germany
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15
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Ren T, Wang H, Yuan Y, Feng H, Wang B, Kuang G, Wei Y, Gao W, Shi H, Liu G. Biochar increases tobacco yield by promoting root growth based on a three-year field application. Sci Rep 2021; 11:21991. [PMID: 34754009 PMCID: PMC8578325 DOI: 10.1038/s41598-021-01426-9] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2021] [Accepted: 08/30/2021] [Indexed: 12/11/2022] Open
Abstract
In order to explore the effects of biochar on root system and growth characteristics of flue-tobacco, three years of field experiments were conducted to study the influence of different biochar application levels [600 (T1), 1200 (T2), 1800(T3), 2400 (T4), 3000 (T5) kg/ha] and no fertilizer (CK) on the root physiological indexes and growth index of tobacco. Compared with local conventional fertilization, the application rate of N fertilizer in each treatment (except for control) was reduced by 40% to analyze the effects of different amount of biochar on the physiological indexes of tobacco roots and leaf photosynthesis during flourishing. The results showed that tobacco plants' root development status in the flourishing period was consistent with the photosynthetic physiological indexes, chlorophyll content, and leaf-area coefficient. Compared with the control, the application of biochar could increase the root vigor by 177.8%. Biochar improved the roots, increasing the total root area by 91.35% and the number of root tips by 100.9%. Meanwhile, biochar increased the net photosynthetic rate of tobacco leaves by 77.3% and the total tobacco biomass by 72.5%. Studies have shown that biochar can promote the development of tobacco roots, and then enhance the photosynthesis of leaves, so that tobacco plants can grow healthily, which is conducive to the tobacco production and the cultivation of soil.
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Affiliation(s)
- Tianbao Ren
- Tobacco College of Henan Agricultural University, Zhengzhou, 450002, China
- Henan Biochar Engineering Technology Research Center, Zhengzhou, 450002, China
- Henan Biochar Technology Engineering Laboratory, Zhengzhou, 450002, China
| | - Huanhuan Wang
- Tobacco College of Henan Agricultural University, Zhengzhou, 450002, China
- Henan Biochar Engineering Technology Research Center, Zhengzhou, 450002, China
- Henan Biochar Technology Engineering Laboratory, Zhengzhou, 450002, China
| | - Ye Yuan
- Mudanjiang Tobacco Scientific Research Institute, Herbin, 150090, China
| | - Huilin Feng
- Tobacco College of Henan Agricultural University, Zhengzhou, 450002, China
| | - Bo Wang
- Mudanjiang Tobacco Company, Mudanjiang, 157000, China
| | - Gang Kuang
- Mudanjiang Tobacco Company, Mudanjiang, 157000, China
| | - Yuewei Wei
- Tobacco College of Henan Agricultural University, Zhengzhou, 450002, China
| | - Weikai Gao
- Guangdong China Tobacco Industry Co., Ltd, Guangzhou, 510032, China.
| | - Hongzhi Shi
- Tobacco College of Henan Agricultural University, Zhengzhou, 450002, China.
| | - Guoshun Liu
- Tobacco College of Henan Agricultural University, Zhengzhou, 450002, China
- Henan Biochar Engineering Technology Research Center, Zhengzhou, 450002, China
- Henan Biochar Technology Engineering Laboratory, Zhengzhou, 450002, China
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16
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Kalu CM, Rauwane ME, Ntushelo K. Microbial Spectra, Physiological Response and Bioremediation Potential of Phragmites australis for Agricultural Production. FRONTIERS IN SUSTAINABLE FOOD SYSTEMS 2021. [DOI: 10.3389/fsufs.2021.696196] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022] Open
Abstract
Common reed (Phragmites australis) can invade and dominate in its natural habitat which is mainly wetlands. It can tolerate harsh environments as well as remediate polluted and environmental degraded sites such as mine dumps and other polluted wastelands. For this reason, this can be a very critical reed to reclaim wastelands for agricultural use to ensure sustainability. The present review manuscript examined the microbial spectra of P. australis as recorded in various recent studies, its physiological response when growing under stress as well as complementation between rhizosphere microbes and physiological responses which result in plant growth promotion in the process of phytoremediation. Microbes associated with P. australis include Proteobacteria, Bacteriodetes, and Firmicutes, Fusobacteria, Actinobacteria, and Planctomycetes families of bacteria among others. Some of these microbes and arbuscular mycorrhizal fungi have facilitated plant growth and phytoremediation by P. australis. This is worthwhile considering that there are vast areas of polluted and wasted land which require reclamation for agricultural use. Common reed with its associated rhizosphere microbes can be utilized in these land reclamation efforts. This present study suggests further work to identify microbes which when administered to P. australis can stimulate its growth in polluted environments and help in land reclamation efforts for agricultural use.
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Alexander A, Singh VK, Mishra A. Interaction of the novel bacterium Brachybacterium saurashtrense JG06 with Arachis hypogaea leads to changes in physio-biochemical activity of plants to cope with nitrogen starvation conditions. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2021; 166:974-984. [PMID: 34265696 DOI: 10.1016/j.plaphy.2021.07.007] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2021] [Revised: 06/18/2021] [Accepted: 07/05/2021] [Indexed: 06/13/2023]
Abstract
Plant-microbe interactions are widely accepted, steady, and native methods used against different environmental stress conditions. In this study, peanut plants grown under control (with N2) and stressed (N2 deficit) conditions with or without the bacterium Brachybacterium saurashtrense were assessed for different physio-biochemical activities and differential gene expression. Higher shoot (24-25 cm) and root length (12-15 cm), and fresh (7-9 g) and dry weight (1-1.5 g) were observed in the treated plants compared to untreated plants under stress conditions. Similarly, high total chlorophyll (0.5-0.7 mg.g-1Fw), chlorophyll b (0.2-0.4 mg.g-1Fw), and carotenoid (12-13 mg.g-1Fw), whereas low electrolyte leakage and lipid peroxidation, and high membrane stability were observed in the treated plants. Interestingly, low proline content (20-21 μg.g-1Fw) and total soluble sugar (0.2 mg.g-1Fw) were observed in the treated plants. In contrast, a higher total amino acid content (1.0 mg.g-1Fw) was estimated in the treated plants. Enhanced antioxidant and scavenging activities of treated plants were observed compared to untreated plants under N2 stress conditions. A total of 263 genes were differentially expressed; the majority (93%) of which belonged to unknown/uncharacterized/hypothetical categories, followed by metabolism (1.8%) and photosynthesis (1.3%) in the treated peanut plants. Overall, the diazotrophic plant growth promoting novel bacterium B. saurashtrense JG06 provides endurance to peanut plants by modulating physio-biochemical activity and host-gene expression under nitrogen starvation conditions. Plant metabolites, including flavonoids and phenolics, also play a protective role in abiotic stress by scavenging free radicles. This study provides new insight into plant-microbe interactions in the host plant.
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Affiliation(s)
- Ankita Alexander
- Division of Applied Phycology and Biotechnology, CSIR- Central Salt and Marine Chemicals Research Institute, G. B. Marg, Bhavnagar, 364002, Gujarat, India; Academy of Scientific and Innovative Research (AcSIR), CSIR, Ghaziabad, India.
| | - Vijay K Singh
- Division of Applied Phycology and Biotechnology, CSIR- Central Salt and Marine Chemicals Research Institute, G. B. Marg, Bhavnagar, 364002, Gujarat, India.
| | - Avinash Mishra
- Division of Applied Phycology and Biotechnology, CSIR- Central Salt and Marine Chemicals Research Institute, G. B. Marg, Bhavnagar, 364002, Gujarat, India; Academy of Scientific and Innovative Research (AcSIR), CSIR, Ghaziabad, India.
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18
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Ding J, Jia Y, Zhao C, Bo W, Xu X, Lv R, Zhou G, Kong Q, Du Y, Xu F, Wang Q. Microbial abundance and community in constructed wetlands planted with Phragmites australis and Typha orientalis in winter. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2021; 23:1476-1485. [PMID: 33825568 DOI: 10.1080/15226514.2021.1907737] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
The microbial abundance and communities were characterized in CWs with different plant species during winter. Better removal efficiency with high microbial abundance and diversified microbial community were found in CWs planted with Phragmites australis. This study confirmed that in winter, withered plants in CWs can effectively remove NH4+-N and COD by affecting microbial abundance and community structure.
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Affiliation(s)
- Jiewei Ding
- College of Geography and Environment, Collaborative Innovation Center of Human-Nature and Green Development in the Universities of Shandong, Shandong Normal University, Jinan, PR China
| | - Yingchao Jia
- College of Geography and Environment, Collaborative Innovation Center of Human-Nature and Green Development in the Universities of Shandong, Shandong Normal University, Jinan, PR China
| | - Congcong Zhao
- College of Geography and Environment, Collaborative Innovation Center of Human-Nature and Green Development in the Universities of Shandong, Shandong Normal University, Jinan, PR China
| | - Wenbin Bo
- College of Geography and Environment, Collaborative Innovation Center of Human-Nature and Green Development in the Universities of Shandong, Shandong Normal University, Jinan, PR China
| | - Xiaoqing Xu
- College of Geography and Environment, Collaborative Innovation Center of Human-Nature and Green Development in the Universities of Shandong, Shandong Normal University, Jinan, PR China
| | - Ruiyuan Lv
- College of Geography and Environment, Collaborative Innovation Center of Human-Nature and Green Development in the Universities of Shandong, Shandong Normal University, Jinan, PR China
- Institute of Environment and Ecology, Shandong Normal University, Jinan, PR China
| | - Guoying Zhou
- College of Geography and Environment, Collaborative Innovation Center of Human-Nature and Green Development in the Universities of Shandong, Shandong Normal University, Jinan, PR China
| | - Qiang Kong
- College of Geography and Environment, Collaborative Innovation Center of Human-Nature and Green Development in the Universities of Shandong, Shandong Normal University, Jinan, PR China
| | - Yuanda Du
- College of Geography and Environment, Collaborative Innovation Center of Human-Nature and Green Development in the Universities of Shandong, Shandong Normal University, Jinan, PR China
| | - Fei Xu
- College of Geography and Environment, Collaborative Innovation Center of Human-Nature and Green Development in the Universities of Shandong, Shandong Normal University, Jinan, PR China
| | - Qian Wang
- College of Geography and Environment, Collaborative Innovation Center of Human-Nature and Green Development in the Universities of Shandong, Shandong Normal University, Jinan, PR China
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Biopolymer production by halotolerant bacteria isolated from Caatinga biome. Braz J Microbiol 2021; 52:547-559. [PMID: 33491139 DOI: 10.1007/s42770-021-00426-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2020] [Accepted: 01/06/2021] [Indexed: 12/21/2022] Open
Abstract
Saline environments are extreme habitats with a high diversity of microorganisms source of a myriad of biomolecules. These microorganisms are assigned as extremophiles recognized to be producers of new natural compounds, which can be synthesized by helping to survive under harshness and extreme conditions. In Brazil, in the saline and semi-arid region of Areia Branca (Caatinga biome), halotolerant bacteria (able to growth at high NaCl concentrations) were isolated from rhizosphere of native plants Blutaparon portulacoides and Spergularia sp. and their biopolymer production was studied. A total of 25 bacterial isolates were identified at genus level based on 16S rRNA gene sequence analysis. Isolates were mainly Gram-positive bacteria from Bacillaceae, Staphylococcaceae, Microbacteriaceae, and Bacillales XII incertae sedis families, affiliates to Bacillus, Staphylococcus, Curtobacterium, and Exiguobacterium genera, respectively. One of the Gram-negative isolates was identified as member of the Pseudomonadaceae family, genus Pseudomonas. All the identified strains were halotolerant bacteria with optimum growth at 0.6-2.0 M salt concentrations. Assays for biopolymer production showed that the halotolerant strains are a rich source of compounds as polyhydroxyalkanoates (PHA), biodegradable biopolymer, such as poly(3-hydroxybutyrate) (PHB) produced from low-cost substrates, and exopolysaccharides (EPS), such as hyaluronic acid (HA), metabolite of great interest to the cosmetic and pharmaceutical industry. Also, eight bacterial EPS extracts showed immunostimulatory activity, promising results that can be used in biomedical applications. Overall, our findings demonstrate that these biomolecules can be produced in culture medium with 0.6-2.0 M NaCl concentrations, relevant feature to avoid costly production processes. This is the first report of biopolymer-producing bacteria from a saline region of Caatinga biome that showed important biological activities.
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