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Tanaka R, Kawamata K, Urashima M, Matsuda K, Izuta T, Watanabe M. Vertical gradient of needle ozone uptake within the canopy of Cryptomeria japonica. ENVIRONMENTAL RESEARCH 2024; 258:119464. [PMID: 38908659 DOI: 10.1016/j.envres.2024.119464] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2024] [Revised: 06/10/2024] [Accepted: 06/19/2024] [Indexed: 06/24/2024]
Abstract
Leaf ozone uptake through the stomata is an important index for the ozone risk assessments on trees. Stomatal conductance (gs) and ozone concentration ([O3]), determinants of the leaf ozone uptake, are known to show vertical gradients within a tree canopy. However, less is known about the within-canopy vertical gradient of leaf ozone uptake. This study was aimed to elucidate how the vertical gradient of [O3] and gs affect needle ozone uptake within a canopy of mature Cryptomeria japonica trees in a suburban forest at Tokyo, Japan. For this purpose, a multilayer gas exchange model was applied to estimate the vertical gradient of needle gs and the accumulated ozone uptake during the study period (POD1, Phytotoxic Ozone Dose above a threshold of 1 nmol m-2 s-1). In addition, we also tested several scenarios of vertical gradient of [O3] within the canopy for sensitivity analysis. The POD1 was declined from the top to the bottom of the canopy. This tendency strongly depended on the vertical gradient of gs and was hardly affected by the changes in simulated vertical reductions of the [O3]. We further assessed the photosynthesis of sunlit needles (needles absorbing both direct and diffuse light) and shaded needles (needles only absorbing diffuse light). The photosynthesis of shaded needles in the upper half of the canopy made a great contribution to the entire canopy photosynthesis. In addition, given that their POD1 was lower than that of sunlit needles, ozone may affect sunlit and shaded needles differently. We concluded that these considerations should be incorporated into modeling of the calculation of ozone uptake for mature trees to make accurate predictions of the ozone effects on trees at the canopy scale.
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Affiliation(s)
- Ryoji Tanaka
- United Graduate School of Agricultural Science, Tokyo University of Agriculture and Technology, Fuchu, Tokyo, 183-8509, Japan
| | - Kenta Kawamata
- Graduate School of Agriculture, Tokyo University of Agriculture and Technology, Fuchu, Tokyo, 183-8509, Japan
| | - Miyu Urashima
- Graduate School of Agriculture, Tokyo University of Agriculture and Technology, Fuchu, Tokyo, 183-8509, Japan
| | - Kazuhide Matsuda
- Institute of Agriculture, Tokyo University of Agriculture and Technology, Fuchu, Tokyo, 183-8509, Japan
| | - Takeshi Izuta
- Institute of Agriculture, Tokyo University of Agriculture and Technology, Fuchu, Tokyo, 183-8509, Japan
| | - Makoto Watanabe
- Institute of Agriculture, Tokyo University of Agriculture and Technology, Fuchu, Tokyo, 183-8509, Japan.
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Falcioni R, Chicati ML, de Oliveira RB, Antunes WC, Hasanuzzaman M, Demattê JAM, Nanni MR. Decreased Photosynthetic Efficiency in Nicotiana tabacum L. under Transient Heat Stress. PLANTS (BASEL, SWITZERLAND) 2024; 13:395. [PMID: 38337928 PMCID: PMC10856914 DOI: 10.3390/plants13030395] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/08/2024] [Revised: 01/25/2024] [Accepted: 01/26/2024] [Indexed: 02/12/2024]
Abstract
Heat stress is an abiotic factor that affects the photosynthetic parameters of plants. In this study, we examined the photosynthetic mechanisms underlying the rapid response of tobacco plants to heat stress in a controlled environment. To evaluate transient heat stress conditions, changes in photochemical, carboxylative, and fluorescence efficiencies were measured using an infrared gas analyser (IRGA Licor 6800) coupled with chlorophyll a fluorescence measurements. Our findings indicated that significant disruptions in the photosynthetic machinery occurred at 45 °C for 6 h following transient heat treatment, as explained by 76.2% in the principal component analysis. The photosynthetic mechanism analysis revealed that the dark respiration rate (Rd and Rd*CO2) increased, indicating a reduced potential for carbon fixation during plant growth and development. When the light compensation point (LCP) increased as the light saturation point (LSP) decreased, this indicated potential damage to the photosystem membrane of the thylakoids. Other photosynthetic parameters, such as AMAX, VCMAX, JMAX, and ΦCO2, also decreased, compromising both photochemical and carboxylative efficiencies in the Calvin-Benson cycle. The energy dissipation mechanism, as indicated by the NPQ, qN, and thermal values, suggested that a photoprotective strategy may have been employed. However, the observed transitory damage was a result of disruption of the electron transport rate (ETR) between the PSII and PSI photosystems, which was initially caused by high temperatures. Our study highlights the impact of rapid temperature changes on plant physiology and the potential acclimatisation mechanisms under rapid heat stress. Future research should focus on exploring the adaptive mechanisms involved in distinguishing mutants to improve crop resilience against environmental stressors.
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Affiliation(s)
- Renan Falcioni
- Department of Agronomy, State University of Maringá, Av. Colombo, 5790, Maringá 87020-900, PR, Brazil; (M.L.C.); (R.B.d.O.); (W.C.A.); (M.R.N.)
- Department of Biotechnology, Genetic and Cellular Biology, State University of Maringá, Av. Colombo, 5790, Maringá 87020-900, PR, Brazil
| | - Marcelo Luiz Chicati
- Department of Agronomy, State University of Maringá, Av. Colombo, 5790, Maringá 87020-900, PR, Brazil; (M.L.C.); (R.B.d.O.); (W.C.A.); (M.R.N.)
| | - Roney Berti de Oliveira
- Department of Agronomy, State University of Maringá, Av. Colombo, 5790, Maringá 87020-900, PR, Brazil; (M.L.C.); (R.B.d.O.); (W.C.A.); (M.R.N.)
| | - Werner Camargos Antunes
- Department of Agronomy, State University of Maringá, Av. Colombo, 5790, Maringá 87020-900, PR, Brazil; (M.L.C.); (R.B.d.O.); (W.C.A.); (M.R.N.)
| | - Mirza Hasanuzzaman
- Department of Agronomy, Sher-e-Bangla Agricultural University, Dhaka 1207, Bangladesh;
| | - José A. M. Demattê
- Department of Soil Science, Luiz de Queiroz College of Agriculture, University of São Paulo, Av. Pádua Dias, 11, Piracicaba 13418-260, SP, Brazil;
| | - Marcos Rafael Nanni
- Department of Agronomy, State University of Maringá, Av. Colombo, 5790, Maringá 87020-900, PR, Brazil; (M.L.C.); (R.B.d.O.); (W.C.A.); (M.R.N.)
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Lamour J, Davidson KJ, Ely KS, Le Moguédec G, Anderson JA, Li Q, Calderón O, Koven CD, Wright SJ, Walker AP, Serbin SP, Rogers A. The effect of the vertical gradients of photosynthetic parameters on the CO 2 assimilation and transpiration of a Panamanian tropical forest. THE NEW PHYTOLOGIST 2023; 238:2345-2362. [PMID: 36960539 DOI: 10.1111/nph.18901] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/06/2022] [Accepted: 03/14/2023] [Indexed: 05/19/2023]
Abstract
Terrestrial biosphere models (TBMs) include the representation of vertical gradients in leaf traits associated with modeling photosynthesis, respiration, and stomatal conductance. However, model assumptions associated with these gradients have not been tested in complex tropical forest canopies. We compared TBM representation of the vertical gradients of key leaf traits with measurements made in a tropical forest in Panama and then quantified the impact of the observed gradients on simulated canopy-scale CO2 and water fluxes. Comparison between observed and TBM trait gradients showed divergence that impacted canopy-scale simulations of water vapor and CO2 exchange. Notably, the ratio between the dark respiration rate and the maximum carboxylation rate was lower near the ground than at the top-of-canopy, leaf-level water-use efficiency was markedly higher at the top-of-canopy, and the decrease in maximum carboxylation rate from the top-of-canopy to the ground was less than TBM assumptions. The representation of the gradients of leaf traits in TBMs is typically derived from measurements made within-individual plants, or, for some traits, assumed constant due to a lack of experimental data. Our work shows that these assumptions are not representative of the trait gradients observed in species-rich, complex tropical forests.
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Affiliation(s)
- Julien Lamour
- Environmental & Climate Sciences Department, Brookhaven National Laboratory, Upton, NY, 11973, USA
| | - Kenneth J Davidson
- Environmental & Climate Sciences Department, Brookhaven National Laboratory, Upton, NY, 11973, USA
- Department of Ecology and Evolution, Stony Brook University, Stony Brook, NY, 11974, USA
| | - Kim S Ely
- Environmental & Climate Sciences Department, Brookhaven National Laboratory, Upton, NY, 11973, USA
| | - Gilles Le Moguédec
- AMAP, Université Montpellier, INRAE, Cirad CNRS, IRD, Montpellier, 34000, France
| | - Jeremiah A Anderson
- Environmental & Climate Sciences Department, Brookhaven National Laboratory, Upton, NY, 11973, USA
| | - Qianyu Li
- Environmental & Climate Sciences Department, Brookhaven National Laboratory, Upton, NY, 11973, USA
| | - Osvaldo Calderón
- Smithsonian Tropical Research Institute, Balboa, 0843-03092, Republic of Panama
| | - Charles D Koven
- Climate and Ecosystem Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| | - S Joseph Wright
- Smithsonian Tropical Research Institute, Balboa, 0843-03092, Republic of Panama
| | - Anthony P Walker
- Environmental Sciences Division and Climate Change Science Institute, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
| | - Shawn P Serbin
- Environmental & Climate Sciences Department, Brookhaven National Laboratory, Upton, NY, 11973, USA
| | - Alistair Rogers
- Environmental & Climate Sciences Department, Brookhaven National Laboratory, Upton, NY, 11973, USA
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Zhuang J, Chi Y, Wang Y, Zhou L. Trade-off of leaf-scale resource-use efficiencies along the vertical canopy of the subtropical forest. JOURNAL OF PLANT PHYSIOLOGY 2023; 286:154004. [PMID: 37209459 DOI: 10.1016/j.jplph.2023.154004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2022] [Revised: 04/26/2023] [Accepted: 05/07/2023] [Indexed: 05/22/2023]
Abstract
Leaf resource-use efficiencies are key indicators of plant adaptability to climate change, as they depend on both photosynthetic carbon assimilation and available resources. However, accurately quantifying the response of the coupled carbon and water cycles is challenging due to the canopy vertical variability in resource-use efficiencies, which introduces greater uncertainty into the calculations. Here we experimented to ascertain the vertical variations of leaf resource-use efficiencies along three canopy gradients of coniferous (Pinus elliottii Engelmann.) and broad-leaved (Schima Superba Gardn & Champ.) forests over one year in the subtropical region of China. The efficiency of water (WUE), and nitrogen (NUE) showed higher values in the top canopy level for the two species. The maximum efficiency of light (LUE) occurred in the bottom canopy level for both species. The impact of photosynthetic photon flux density (PPFD), leaf temperature (Tleaf), and vapor pressure deficit (VPD) on leaf resource-use efficiencies varied with canopy gradients in slash pine and schima superba. We also observed a trade-off between NUE and LUE for slash pine and between NUE and WUE for schima superba. Moreover, the variation in the correlation between LUE and WUE indicated a change in resource-use strategies for slash pine. These results emphasize the significance of vertical variations in resource-use efficiencies to enhance the prediction of future carbon-water dynamics in the subtropical forest.
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Affiliation(s)
- Jie Zhuang
- College of Geography and Environmental Sciences, Zhejiang Normal University, Jinhua, 321004, China
| | - Yonggang Chi
- College of Geography and Environmental Sciences, Zhejiang Normal University, Jinhua, 321004, China.
| | - Yonglin Wang
- College of Geography and Environmental Sciences, Zhejiang Normal University, Jinhua, 321004, China; National Engineering and Technology Center for Information Agriculture, Nanjing Agricultural University, Nanjing, 210095, China
| | - Lei Zhou
- College of Geography and Environmental Sciences, Zhejiang Normal University, Jinhua, 321004, China.
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He S, Zhao Y, Liu C, Li Z, Zhang Z, Li B, Tang X. An exploration into the relationship between mineral elements (nitrogen and phosphorus) and nutritional quality in soil-watermelon (Citrullus lanatus) system. J Anal Sci Technol 2022. [DOI: 10.1186/s40543-022-00357-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022] Open
Abstract
AbstractTo fundamentally explore the correlation between crop nutritional quality and mineral elements, specific tests and accurate analysis were carried out on all organs and root soil of watermelon (Citrullus lanatus). The results showed that the distribution patterns of nitrogen and phosphorus at watermelon maturity were similar, and the average nitrogen and phosphorus contents were in the orders of leaf and seed > stem, peel, root > pulp > root soil, and peel > seed > root, stem, leaf > root soil > pulp, respectively. From the perspective of element geochemistry, biophile and lithophile elements had the strongest correlation with nitrogen and phosphorus, and watermelon did not antagonize soil nitrogen and phosphorus uptake. The prediction model of nitrogen translocation factor in watermelon organs to total acid was established by partial least squares with R2 = 0.81. Significantly, when the isometric log-ratio of nitrogen to phosphorus in watermelon leaves was 1.97 to 2.19, the watermelon pulp showed better quality with total acid > 0.5%, total sugar > 5% and soluble solids > 10%. Therefore, the characterization of nitrogen and phosphorus in watermelon leaves can serve as a non-destructive analysis to predict watermelon fruit quality.
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Tian P, Liu J, Zhao Y, Huang Y, Lian Y, Wang Y, Ye Y. Nitrogen rates and plant density interactions enhance radiation interception, yield, and nitrogen use efficiencies of maize. FRONTIERS IN PLANT SCIENCE 2022; 13:974714. [PMID: 36212283 PMCID: PMC9540852 DOI: 10.3389/fpls.2022.974714] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/21/2022] [Accepted: 08/29/2022] [Indexed: 06/16/2023]
Abstract
The contributions of the different leaf layers to maize yields identified as middle leaf > lower leaf > upper leaf, where the vertical photosynthetically active radiation (PAR) in the canopy gradually decreases. We hypothesized that the allocation of more PAR and nitrogen (N) to the highest contributing leaves will would be beneficial for higher yields and N use efficiencies. The N application rate and plant density effectively regulated the canopy light and N distribution. We evaluated the interactive effects of N rate and plant density on the agronomic and ecophysiological characteristics of leaves at different orientations in a 2019/2020 field experiment. In this study, an N application rate of 180 kg ha-1 coupled with a plant density of 82,500 plants ha-1 achieved the highest yield and N recovery efficiency (NRE). In contrast to the traditional farming practices in northern China, the density was increased and N rate was reduced. Densification from 52,500 to 82,500 plants ha-1 increased the population leaf area index (LAI) by 37.1% and total photosynthetically active radiation (TPAR) by 29.2%; however, excessive density (from 82,500 to 97,500 plants ha-1) drastically reduced the proportion of TPAR by 28.0% in the lower leaves. With increased density, the leaf areas and angles of the upper leaves decreased much more than those of the other leaves, which allowed the middle and lower leaves to access more light, which manifested a smaller extinction coefficient for light (K L). A high yield (>1,000 kg ha-1) of maize could be achieved simultaneously with higher NRE; however, it was negatively correlated with internal N use efficiency (IEN). Higher N concentrations and lower total performance index (PI total ) in the lower leaves may be an important rationale for the reduction of IEN in high-yielding maize. Additionally, decreased N rate without yield reduction under higher densities was primarily attributed to the more uniform vertical N distribution [a smaller extinction coefficient for N (K N)]. These results suggest that the N fertilizer rate can be moderately reduced without a reduction in maize yield under high plant densities in northern China.
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Durand M, Stangl ZR, Salmon Y, Burgess AJ, Murchie EH, Robson TM. Sunflecks in the upper canopy: dynamics of light-use efficiency in sun and shade leaves of Fagus sylvatica. THE NEW PHYTOLOGIST 2022; 235:1365-1378. [PMID: 35569099 PMCID: PMC9543657 DOI: 10.1111/nph.18222] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2022] [Accepted: 05/07/2022] [Indexed: 05/12/2023]
Abstract
Sunflecks are transient patches of direct radiation that provide a substantial proportion of the daily irradiance to leaves in the lower canopy. In this position, faster photosynthetic induction would allow for higher sunfleck-use efficiency, as is commonly reported in the literature. Yet, when sunflecks are too few and far between, it may be more beneficial for shade leaves to prioritize efficient photosynthesis under shade. We investigated the temporal dynamics of photosynthetic induction, recovery under shade, and stomatal movement during a sunfleck, in sun and shade leaves of Fagus sylvatica from three provenances of contrasting origin. We found that shade leaves complete full induction in a shorter time than sun leaves, but that sun leaves respond faster than shade leaves due to their much larger amplitude of induction. The core-range provenance achieved faster stomatal opening in shade leaves, which may allow for better sunfleck-use efficiency in denser canopies and lower canopy positions. Our findings represent a paradigm shift for future research into light fluctuations in canopies, drawing attention to the ubiquitous importance of sunflecks for photosynthesis, not only in lower-canopy leaves where shade is prevalent, but particularly in the upper canopy where longer sunflecks are more common due to canopy openness.
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Affiliation(s)
- Maxime Durand
- Organismal and Evolutionary Biology (OEB), Viikki Plant Science Centre (ViPS), Faculty of Biological and Environmental SciencesUniversity of Helsinki00014HelsinkiFinland
| | - Zsofia R. Stangl
- Organismal and Evolutionary Biology (OEB), Viikki Plant Science Centre (ViPS), Faculty of Biological and Environmental SciencesUniversity of Helsinki00014HelsinkiFinland
- Department of Forest Ecology and ManagementSwedish University of Agricultural Sciences901 83UmeåSweden
| | - Yann Salmon
- Faculty of Science, Institute for Atmospheric and Earth System Research/PhysicsUniversity of HelsinkiPO Box 68, Gustaf Hällströminkatu 2bHelsinki00014Finland
- Faculty of Agriculture and Forestry, Institute for Atmospheric and Earth System Research/Forest SciencesUniversity of HelsinkiPO Box 27Helsinki00014Finland
| | - Alexandra J. Burgess
- School of BiosciencesUniversity of NottinghamSutton Bonington CampusSutton BoningtonLE12 5RDUK
| | - Erik H. Murchie
- School of BiosciencesUniversity of NottinghamSutton Bonington CampusSutton BoningtonLE12 5RDUK
| | - T. Matthew Robson
- Organismal and Evolutionary Biology (OEB), Viikki Plant Science Centre (ViPS), Faculty of Biological and Environmental SciencesUniversity of Helsinki00014HelsinkiFinland
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Okamoto A, Koyama K, Bhusal N. Diurnal Change of the Photosynthetic Light-Response Curve of Buckbean ( Menyanthes trifoliata), an Emergent Aquatic Plant. PLANTS (BASEL, SWITZERLAND) 2022; 11:174. [PMID: 35050061 PMCID: PMC8779618 DOI: 10.3390/plants11020174] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/30/2021] [Revised: 01/01/2022] [Accepted: 01/04/2022] [Indexed: 12/02/2022]
Abstract
Understanding plant physiological responses to high temperature is an important concern pertaining to climate change. However, compared with terrestrial plants, information about aquatic plants remains limited. Since the degree of midday depression of photosynthesis under high temperature depends on soil water conditions, it is expected that emergent aquatic plants, for which soil water conditions are always saturated, will show different patterns compared with terrestrial plants. We investigated the diurnal course of the photosynthetic light-response curve and incident light intensity for a freshwater emergent plant, buckbean (Menyanthes trifoliata L.; Menyanthaceae) in a cool temperate region. The effect of midday depression was observed only on a very hot day, but not on a moderately hot day, in summer. The diurnal course of photosynthetic light-response curves on this hot day showed that latent morning reduction of photosynthetic capacity started at dawn, preceding the apparent depression around the midday, in agreement with results reported in terrestrial plants. We concluded that (1) midday depression of emergent plants occurs when the stress intensity exceeds the species' tolerance, and (2) measurements of not only photosynthetic rate under field conditions but also diurnal course of photosynthetic light-response curve are necessary to quantify the effect of midday depression.
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Affiliation(s)
- Azumi Okamoto
- Department of Agro-Environmental Science, Obihiro University of Agriculture and Veterinary Medicine, Inadacho, Obihiro 080-8555, Japan
| | - Kohei Koyama
- Department of Agro-Environmental Science, Obihiro University of Agriculture and Veterinary Medicine, Inadacho, Obihiro 080-8555, Japan
| | - Narayan Bhusal
- Department of Agriculture, Forestry and Bioresources, Seoul National University, Seoul 08826, Korea;
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Lacasa J, Hefley TJ, Otegui ME, Ciampitti IA. A practical guide to estimating the light extinction coefficient with nonlinear models-a case study on maize. PLANT METHODS 2021; 17:60. [PMID: 34118957 PMCID: PMC8196512 DOI: 10.1186/s13007-021-00753-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/18/2021] [Accepted: 05/10/2021] [Indexed: 05/20/2023]
Abstract
BACKGROUND The fraction of intercepted photosynthetically active radiation (fPARi) is typically described with a non-linear function of leaf area index (LAI) and k, the light extinction coefficient. The parameter k is used to make statistical inference, as an input into crop models, and for phenotyping. It may be estimated using a variety of statistical techniques that differ in assumptions, which ultimately influences the numerical value k and associated uncertainty estimates. A systematic search of peer-reviewed publications for maize (Zea Mays L.) revealed: (i) incompleteness in reported estimation techniques; and (ii) that most studies relied on dated techniques with unrealistic assumptions, such as log-transformed linear models (LogTLM) or normally distributed data. These findings suggest that knowledge of the variety and trade-offs among statistical estimation techniques is lacking, which hinders the use of modern approaches such as Bayesian estimation (BE) and techniques with appropriate assumptions, e.g. assuming beta-distributed data. RESULTS The parameter k was estimated for seven maize genotypes with five different methods: least squares estimation (LSE), LogTLM, maximum likelihood estimation (MLE) assuming normal distribution, MLE assuming beta distribution, and BE assuming beta distribution. Methods were compared according to the appropriateness for statistical inference, point estimates' properties, and predictive performance. LogTLM produced the worst predictions for fPARi, whereas both LSE and MLE with normal distribution yielded unrealistic predictions (i.e. fPARi < 0 or > 1) and the greatest coefficients for k. Models with beta-distributed fPARi (either MLE or Bayesian) were recommended to obtain point estimates. CONCLUSION Each estimation technique has underlying assumptions which may yield different estimates of k and change inference, like the magnitude and rankings among genotypes. Thus, for reproducibility, researchers must fully report the statistical model, assumptions, and estimation technique. LogTLMs are most frequently implemented, but should be avoided to estimate k. Modeling fPARi with a beta distribution was an absent practice in the literature but is recommended, applying either MLE or BE. This workflow and technique comparison can be applied to other plant canopy models, such as the vertical distribution of nitrogen, carbohydrates, photosynthesis, etc. Users should select the method balancing benefits and tradeoffs matching the purpose of the study.
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Affiliation(s)
- Josefina Lacasa
- Department of Agronomy, Kansas State University, 1712 Claflin Rd, Manhattan, KS, 66506, USA.
- Dpto. de Producción Vegetal, Facultad de Agronomía, Universidad de Buenos Aires, Av. San Martín 4453 (C1417DSE), Ciudad de Buenos Aires, Argentina.
| | - Trevor J Hefley
- Department of Statistics, Kansas State University, 205 Dickens Hall, 1116 Mid-Campus Drive North, Manhattan, KS, 66506, USA
| | - María E Otegui
- Dpto. de Producción Vegetal, Facultad de Agronomía, Universidad de Buenos Aires, Av. San Martín 4453 (C1417DSE), Ciudad de Buenos Aires, Argentina
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Centro Regional Buenos Aires Norte, Estación Experimental Agropecuaria Pergamino INTA, Ruta 32 km 4.5, Pergamino (C2700), Buenos Aires, Argentina
| | - Ignacio A Ciampitti
- Department of Agronomy, Kansas State University, 1712 Claflin Rd, Manhattan, KS, 66506, USA.
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Ye T, Zhang J, Li J, Lu J, Ren T, Cong R, Lu Z, Li X. Nitrogen/potassium interactions increase rice yield by improving canopy performance. Food Energy Secur 2021. [DOI: 10.1002/fes3.295] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022] Open
Affiliation(s)
- Tinghong Ye
- College of Resources and Environment Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs Huazhong Agricultural University Wuhan China
- Microelement Research Center Huazhong Agricultural University Wuhan China
| | - Jianglin Zhang
- College of Resources and Environment Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs Huazhong Agricultural University Wuhan China
- Microelement Research Center Huazhong Agricultural University Wuhan China
| | - Jing Li
- College of Resources and Environment Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs Huazhong Agricultural University Wuhan China
- Microelement Research Center Huazhong Agricultural University Wuhan China
| | - Jianwei Lu
- College of Resources and Environment Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs Huazhong Agricultural University Wuhan China
- Microelement Research Center Huazhong Agricultural University Wuhan China
| | - Tao Ren
- College of Resources and Environment Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs Huazhong Agricultural University Wuhan China
- Microelement Research Center Huazhong Agricultural University Wuhan China
| | - Rihuan Cong
- College of Resources and Environment Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs Huazhong Agricultural University Wuhan China
- Microelement Research Center Huazhong Agricultural University Wuhan China
| | - Zhifeng Lu
- College of Resources and Environment Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs Huazhong Agricultural University Wuhan China
- Microelement Research Center Huazhong Agricultural University Wuhan China
| | - Xiaokun Li
- College of Resources and Environment Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs Huazhong Agricultural University Wuhan China
- Microelement Research Center Huazhong Agricultural University Wuhan China
- Shuangshui Shuanglv Institute Huazhong Agricultural University Wuhan China
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Zhang J, Wan L, Igathinathane C, Zhang Z, Guo Y, Sun D, Cen H. Spatiotemporal Heterogeneity of Chlorophyll Content and Fluorescence Response Within Rice ( Oryza sativa L.) Canopies Under Different Nitrogen Treatments. FRONTIERS IN PLANT SCIENCE 2021; 12:645977. [PMID: 33841474 PMCID: PMC8028447 DOI: 10.3389/fpls.2021.645977] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/24/2020] [Accepted: 03/05/2021] [Indexed: 05/08/2023]
Abstract
Accurate acquisition of plant phenotypic information has raised long-standing concerns in support of crop breeding programs. Different methods have been developed for high throughput plant phenotyping, while they mainly focused on the canopy level without considering the spatiotemporal heterogeneity at different canopy layers and growth stages. This study aims to phenotype spatiotemporal heterogeneity of chlorophyll (Chl) content and fluorescence response within rice leaves and canopies. Multipoint Chl content and high time-resolved Chl a fluorescence (ChlF) transient (OJIP transient) of rice plants were measured at different nitrogen levels and growth stages. Results showed that the Chl content within the upper leaves exhibited an increasing trend from the basal to the top portions but a decreasing pattern within the lower leaves at the most growth stages. Leaf Chl content within the rice canopy was higher in the lower leaves in the vegetative phase, while from the initial heading stage the pattern gradually reversed with the highest Chl content appearing in the upper leaves. Nitrogen supply mainly affects the occurrence time of the reverse vertical pattern. This could be the result of different nutritional demands of leaves transforming from sinks to sources, and it was further confirmed by the fall of the JI phase of OJIP transient in the vegetative phase and the rise in the reproductive phase. We further deduced that the vertical distribution of Chl content could have a defined pattern at a specific growth stage. Furthermore, the reduction of end acceptors at photosystem I (PSI) electron acceptor side per cross section (RE0/CS) was found to be a potential sensitive predictor for identifying the vertical heterogeneity of leaf Chl content. These findings provide prior knowledge on the vertical profiles of crop physiological traits, which explore the opportunity to develop more efficient plant phenotyping tools for crop breeding.
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Affiliation(s)
- Jiafei Zhang
- College of Biosystems Engineering and Food Science, State Key Laboratory of Modern Optical Instrumentation, Zhejiang University, Hangzhou, China
- Key Laboratory of Spectroscopy Sensing, Ministry of Agriculture and Rural Affairs, Hangzhou, China
| | - Liang Wan
- College of Biosystems Engineering and Food Science, State Key Laboratory of Modern Optical Instrumentation, Zhejiang University, Hangzhou, China
- Key Laboratory of Spectroscopy Sensing, Ministry of Agriculture and Rural Affairs, Hangzhou, China
| | - C. Igathinathane
- Department of Agricultural and Biosystems Engineering, North Dakota State University, Fargo, ND, United States
| | - Zhao Zhang
- Key Laboratory of Modern Precision Agriculture System Integration Research, Ministry of Education of China, China Agricultural University, Beijing, China
- Key Laboratory of Agriculture Information Acquisition Technology, Ministry of Agriculture of China, China Agricultural University, Beijing, China
| | - Ya Guo
- Key Laboratory of Advanced Process Control for Light Industry, Ministry of Education, Jiangnan University, Wuxi, China
| | - Dawei Sun
- College of Biosystems Engineering and Food Science, State Key Laboratory of Modern Optical Instrumentation, Zhejiang University, Hangzhou, China
- Key Laboratory of Spectroscopy Sensing, Ministry of Agriculture and Rural Affairs, Hangzhou, China
| | - Haiyan Cen
- College of Biosystems Engineering and Food Science, State Key Laboratory of Modern Optical Instrumentation, Zhejiang University, Hangzhou, China
- Key Laboratory of Spectroscopy Sensing, Ministry of Agriculture and Rural Affairs, Hangzhou, China
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12
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Dale R, Oswald S, Jalihal A, LaPorte MF, Fletcher DM, Hubbard A, Shiu SH, Nelson ADL, Bucksch A. Overcoming the Challenges to Enhancing Experimental Plant Biology With Computational Modeling. FRONTIERS IN PLANT SCIENCE 2021; 12:687652. [PMID: 34354723 PMCID: PMC8329482 DOI: 10.3389/fpls.2021.687652] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/29/2021] [Accepted: 06/01/2021] [Indexed: 05/10/2023]
Abstract
The study of complex biological systems necessitates computational modeling approaches that are currently underutilized in plant biology. Many plant biologists have trouble identifying or adopting modeling methods to their research, particularly mechanistic mathematical modeling. Here we address challenges that limit the use of computational modeling methods, particularly mechanistic mathematical modeling. We divide computational modeling techniques into either pattern models (e.g., bioinformatics, machine learning, or morphology) or mechanistic mathematical models (e.g., biochemical reactions, biophysics, or population models), which both contribute to plant biology research at different scales to answer different research questions. We present arguments and recommendations for the increased adoption of modeling by plant biologists interested in incorporating more modeling into their research programs. As some researchers find math and quantitative methods to be an obstacle to modeling, we provide suggestions for easy-to-use tools for non-specialists and for collaboration with specialists. This may especially be the case for mechanistic mathematical modeling, and we spend some extra time discussing this. Through a more thorough appreciation and awareness of the power of different kinds of modeling in plant biology, we hope to facilitate interdisciplinary, transformative research.
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Affiliation(s)
- Renee Dale
- Donald Danforth Plant Science Center, St. Louis, MO, United States
- *Correspondence: Renee Dale
| | - Scott Oswald
- Warnell School of Forestry and Natural Resources and Institute of Bioinformatics, University of Georgia, Athens, GA, United States
| | - Amogh Jalihal
- Department of Systems Biology, Harvard Medical School, Boston, MA, United States
| | - Mary-Francis LaPorte
- Department of Plant Sciences, University of California, Davis, Davis, CA, United States
| | - Daniel M. Fletcher
- Bioengineering Sciences Research Group, Department of Mechanical Engineering, School of Engineering, Faculty of Engineering and Physical Sciences, University of Southampton, Southampton, United Kingdom
| | - Allen Hubbard
- Donald Danforth Plant Science Center, St. Louis, MO, United States
| | - Shin-Han Shiu
- Department of Plant Biology and Department of Computational Mathematics, Science, and Engineering, Michigan State University, East Lansing, MI, United States
| | | | - Alexander Bucksch
- Warnell School of Forestry and Natural Resources and Institute of Bioinformatics, University of Georgia, Athens, GA, United States
- Department of Plant Biology, University of Georgia, Athens, GA, United States
- Institute of Bioinformatics, University of Georgia, Athens, GA, United States
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13
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Pao YC, Chen TW, Moualeu-Ngangue DP, Stützel H. Experiments for in silico evaluation of Optimality of Photosynthetic Nitrogen Distribution and Partitioning in the Canopy: an Example Using Greenhouse Cucumber Plants. Bio Protoc 2020; 10:e3556. [PMID: 33659528 DOI: 10.21769/bioprotoc.3556] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2019] [Revised: 01/16/2020] [Accepted: 02/11/2020] [Indexed: 11/02/2022] Open
Abstract
Acclimation of leaf traits to fluctuating environments is a key mechanism to maximize fitness. One of the most important strategies in acclimation to changing light is to maintain efficient utilization of nitrogen in the photosynthetic apparatus by continuous modifications of between-leaf distribution along the canopy depth and within-leaf partitioning between photosynthetic functions according to local light availability. Between-leaf nitrogen distribution has been intensively studied over the last three decades, where proportional coordination between nitrogen concentration and light gradient was considered optimal in terms of maximizing canopy photosynthesis, without taking other canopy structural and physiological factors into account. We proposed a mechanistic model of protein turnover dynamics in different photosynthetic functions, which can be parameterized using leaves grown under different levels of constant light. By integrating this dynamic model into a multi-layer canopy model, constructed using data collected from a greenhouse experiment, it allowed us to test in silico the degree of optimality in photosynthetic nitrogen use for maximizing canopy carbon assimilation under given light environments.
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Affiliation(s)
- Yi-Chen Pao
- Institute of Horticultural Production Systems, Leibniz Universität Hannover, Hannover, Germany
| | - Tsu-Wei Chen
- Institute of Horticultural Production Systems, Leibniz Universität Hannover, Hannover, Germany
| | | | - Hartmut Stützel
- Institute of Horticultural Production Systems, Leibniz Universität Hannover, Hannover, Germany
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15
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Liu Z, Hikosaka K, Li F, Jin G. Variations in leaf economics spectrum traits for an evergreen coniferous species: Tree size dominates over environment factors. Funct Ecol 2020. [DOI: 10.1111/1365-2435.13498] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Affiliation(s)
- Zhili Liu
- Center for Ecological Research Northeast Forestry University Harbin China
- Key Laboratory of Sustainable Forest Ecosystem Management‐Ministry of Education Northeast Forestry University Harbin China
| | - Kouki Hikosaka
- Graduate School of Life Sciences Tohoku University Sendai Miyagi Japan
| | - Fengri Li
- Key Laboratory of Sustainable Forest Ecosystem Management‐Ministry of Education Northeast Forestry University Harbin China
- School of Forestry Northeast Forestry University Harbin China
| | - Guangze Jin
- Center for Ecological Research Northeast Forestry University Harbin China
- Key Laboratory of Sustainable Forest Ecosystem Management‐Ministry of Education Northeast Forestry University Harbin China
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16
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Wheeler KI, Levia DF, Vargas R. Visible and near-infrared hyperspectral indices explain more variation in lower-crown leaf nitrogen concentrations in autumn than in summer. Oecologia 2019; 192:13-27. [PMID: 31773314 DOI: 10.1007/s00442-019-04554-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2019] [Accepted: 11/05/2019] [Indexed: 10/25/2022]
Abstract
Autumn canopy phenological transitions are increasing in length as a consequence of climate change. Here, we assess how well hyperspectral indices in the visible and near-infrared (NIR) wavelengths predict nitrogen (N) concentrations in lower-canopy leaves in the autumn phenological transition as they are generally understudied in leaf trait research. Using a Bayesian framework, we tested how well published indices are able to predict N concentrations in Fagus grandifolia Ehrh., Liriodendron tulipifera L., and Betula lenta L. from mid-summer through senescence, and how related the indices are to autumn phenological change. No indices were able to determine a trend in differences in N in mid-summer leaves. Indices that included wavelengths in the green and NIR ranges were the first indices able to detect a trend and had among the highest correlations with N concentration in both the last green collection and the senescing collection. Models were unique when indices were fit to data from different phenophases. Indices that focused on only the red edge (i.e., the sharp increase in reflectance between the red and NIR wavelengths) had the strongest explanatory power across the autumn phenological transition, but had less explanatory power for individual collections. These indices, as well as those that have been correlated with chlorophyll (CCI) and carotenoids (PRI), were the strongest descriptors of autumn progression. This study provides insights on challenges and capabilities to monitor a leaf's N concentration throughout and across canopy senescence.
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Affiliation(s)
- Kathryn I Wheeler
- Department of Geography and Spatial Sciences, University of Delaware, Newark, DE, USA. .,Department of Earth and Environment, Boston University, Boston, MA, USA.
| | - Delphis F Levia
- Department of Geography and Spatial Sciences, University of Delaware, Newark, DE, USA.,Department of Plant and Soil Sciences, University of Delaware, Newark, DE, USA
| | - Rodrigo Vargas
- Department of Geography and Spatial Sciences, University of Delaware, Newark, DE, USA.,Department of Plant and Soil Sciences, University of Delaware, Newark, DE, USA
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Burgess AJ, Gibbs JA, Murchie EH. A canopy conundrum: can wind-induced movement help to increase crop productivity by relieving photosynthetic limitations? JOURNAL OF EXPERIMENTAL BOTANY 2019; 70:2371-2380. [PMID: 30481324 DOI: 10.1093/jxb/ery424] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/17/2018] [Accepted: 11/19/2018] [Indexed: 05/12/2023]
Abstract
Wind-induced movement is a ubiquitous occurrence for all plants grown in natural or agricultural settings, and in the context of high, damaging wind speeds it has been well studied. However, the impact of lower wind speeds (which do not cause any damage) on mode of movement, light transmission, and photosynthetic properties has, surprisingly, not been fully explored. This impact is likely to be influenced by biomechanical properties and architectural features of the plant and canopy. A limited number of eco-physiological studies have indicated that movement in wind has the potential to alter light distribution within canopies, improving canopy productivity by relieving photosynthetic limitations. Given the current interest in canopy photosynthesis, it is timely to consider such movement in terms of crop yield progress. This opinion article sets out the background to wind-induced crop movement and argues that plant biomechanical properties may have a role in the optimization of whole-canopy photosynthesis via established physiological processes. We discuss how this could be achieved using canopy models.
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Affiliation(s)
- Alexandra J Burgess
- Division of Plant and Crop Science, School of Biosciences, University of Nottingham, Sutton Bonington Campus, UK
| | - Jonathon A Gibbs
- School of Computer Science, University of Nottingham, Jubilee Campus, UK
| | - Erik H Murchie
- Division of Plant and Crop Science, School of Biosciences, University of Nottingham, Sutton Bonington Campus, UK
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18
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Pao YC, Chen TW, Moualeu-Ngangue DP, Stützel H. Environmental triggers for photosynthetic protein turnover determine the optimal nitrogen distribution and partitioning in the canopy. JOURNAL OF EXPERIMENTAL BOTANY 2019; 70:2419-2434. [PMID: 30124935 PMCID: PMC6519421 DOI: 10.1093/jxb/ery308] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2018] [Accepted: 08/14/2018] [Indexed: 05/12/2023]
Abstract
Plants continually adjust the photosynthetic functions in their leaves to fluctuating light, thereby optimizing the use of photosynthetic nitrogen (Nph) at the canopy level. To investigate the complex interplay between external signals during the acclimation processes, a mechanistic model based on the concept of protein turnover (synthesis and degradation) was proposed and parameterized using cucumber grown under nine combinations of nitrogen and light in growth chambers. Integrating this dynamic model into a multi-layer canopy model provided accurate predictions of photosynthetic acclimation of greenhouse cucumber canopies grown under high and low nitrogen supply in combination with day-to-day fluctuations in light at two different levels. This allowed us to quantify the degree of optimality in canopy nitrogen use for maximizing canopy carbon assimilation, which was influenced by Nph distribution along canopy depth or Nph partitioning between functional pools. Our analyses suggest that Nph distribution is close to optimum and Nph reallocation is more important under low nitrogen. Nph partitioning is only optimal under a light level similar to the average light intensity during acclimation, meaning that day-to-day light fluctuations inevitably result in suboptimal Nph partitioning. Our results provide insights into photoacclimation and can be applied to crop model improvement.
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Affiliation(s)
- Yi-Chen Pao
- Institute of Horticultural Production Systems, Leibniz Universität Hannover, Hannover, Germany
| | - Tsu-Wei Chen
- Institute of Horticultural Production Systems, Leibniz Universität Hannover, Hannover, Germany
| | | | - Hartmut Stützel
- Institute of Horticultural Production Systems, Leibniz Universität Hannover, Hannover, Germany
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19
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Moriwaki T, Falcioni R, Tanaka FAO, Cardoso KAK, Souza LA, Benedito E, Nanni MR, Bonato CM, Antunes WC. Nitrogen-improved photosynthesis quantum yield is driven by increased thylakoid density, enhancing green light absorption. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2019; 278:1-11. [PMID: 30471722 DOI: 10.1016/j.plantsci.2018.10.012] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/09/2018] [Revised: 10/11/2018] [Accepted: 10/15/2018] [Indexed: 05/22/2023]
Abstract
A nitrogen supply is necessary for all plants. The multifaceted reasons why this nutrient stimulates plant dry weight accumulation are assessed herein. We compared tomato plants grown in full sunlight and in low light environments under four N doses and evaluated plant growth, photosynthetic and calorimetric parameters, leaf anatomy, chloroplast transmission electron microscopy (TEM) and a high resolution profile of optical leaf properties. Increases in N supplies allow tomato plants to grow faster in low light environments (91.5% shading), displaying a robust light harvesting machinery and, consequently, improved light harvesting efficiency. Ultrastructurally, high N doses were associated to a high number of grana per chloroplast and greater thylakoid stacking, as well as high electrodensity by TEM. Robust photosynthetic machinery improves green light absorption, but not blue or red. In addition, low construction and dark respiration costs were related to improved total dry weight accumulation in shade conditions. By applying multivariate analyses, we conclude that improved green light absorbance, improved quantum yield and greater palisade parenchyma cell area are the primary components that drive increased plant growth under natural light-limited photosynthesis.
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Affiliation(s)
- Thaise Moriwaki
- Laboratório de Ecofisiologia Vegetal, Brazil; Universidade Estadual de Maringá (UEM), Brazil
| | - Renan Falcioni
- Laboratório de Ecofisiologia Vegetal, Brazil; Universidade Estadual de Maringá (UEM), Brazil
| | - Francisco André Ossamu Tanaka
- Departamento de Fitopatologia e Nematologia (LFN), Escola Superior de Agricultura, Luiz de Queiroz, Universidade de São Paulo (ESALQ - USP), Brazil
| | | | - L A Souza
- Universidade Estadual de Maringá (UEM), Brazil; Laboratório de Histotécnica Vegetal, Brazil
| | - Evanilde Benedito
- Universidade Estadual de Maringá (UEM), Brazil; Laboratório de Ecologia Energética, Brazil
| | - Marcos Rafael Nanni
- Universidade Estadual de Maringá (UEM), Brazil; Grupo Aplicado ao Levantamento e Espacialização dos Solos, Brazil
| | - Carlos Moacir Bonato
- Laboratório de Ecofisiologia Vegetal, Brazil; Universidade Estadual de Maringá (UEM), Brazil
| | - Werner Camargos Antunes
- Laboratório de Ecofisiologia Vegetal, Brazil; Universidade Estadual de Maringá (UEM), Brazil.
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20
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Kaitaniemi P, Lintunen A, Sievänen R, Perttunen J. Computational analysis of the effects of light gradients and neighbouring species on foliar nitrogen. ECOL INFORM 2018. [DOI: 10.1016/j.ecoinf.2018.09.009] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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21
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Yoshinaka K, Nagashima H, Yanagita Y, Hikosaka K. The role of biomass allocation between lamina and petioles in a game of light competition in a dense stand of an annual plant. ANNALS OF BOTANY 2018; 121:1055-1064. [PMID: 29365041 PMCID: PMC5906924 DOI: 10.1093/aob/mcy001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2017] [Accepted: 01/02/2018] [Indexed: 05/08/2023]
Abstract
BACKGROUND AND AIMS Models of plant three-dimensional (3-D) architecture have been used to find optimal morphological characteristics for light capture or carbon assimilation of a solitary plant. However, optimality theory is not necessarily useful to predict the advantageous strategy of an individual in dense stands, where light capture of an individual is influenced not only by its architecture but also by the architecture of its neighbours. Here, we analysed optimal and evolutionarily stable biomass allocation between the lamina and petiole (evolutionarily stable strategy; ESS) under various neighbour conditions using a 3-D simulation model based on the game theory. METHODS We obtained 3-D information of every leaf of actual Xanthium canadense plants grown in a dense stand using a ruler and a protractor. We calculated light capture and carbon assimilation of an individual plant when it stands alone and when it is surrounded by neighbours in the stand. We considered three trade-offs in petiole length and lamina area: biomass allocation, biomechanical constraints and photosynthesis. Optimal and evolutionarily stable biomass allocation between petiole and lamina were calculated under various neighbour conditions. KEY RESULTS Optimal petiole length varied depending on the presence of neighbours and on the architecture of neighbours. The evolutionarily stable petiole length of plants in the stand tended to be longer than the optimal length of solitary plants. The mean of evolutionarily stable petiole length in the stand was similar to the real one. Trade-offs of biomechanical constraint and photosynthesis had minor effects on optimal and evolutionarily stable petiole length. CONCLUSION Actual plants realize evolutionarily stable architecture in dense stands. Interestingly, there were multiple evolutionarily stable petiole lengths even in one stand, suggesting that plants with different architectures can coexist across plant communities.
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Affiliation(s)
- Kenta Yoshinaka
- Graduate School of Life Sciences, Tohoku University, Aoba, Sendai, Japan
| | - Hisae Nagashima
- Graduate School of Life Sciences, Tohoku University, Aoba, Sendai, Japan
| | | | - Kouki Hikosaka
- Graduate School of Life Sciences, Tohoku University, Aoba, Sendai, Japan
- CREST, JST, Tokyo, Japan
- For correspondence. E-mail
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23
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Burgess AJ, Retkute R, Herman T, Murchie EH. Exploring Relationships between Canopy Architecture, Light Distribution, and Photosynthesis in Contrasting Rice Genotypes Using 3D Canopy Reconstruction. FRONTIERS IN PLANT SCIENCE 2017; 8:734. [PMID: 28567045 PMCID: PMC5434157 DOI: 10.3389/fpls.2017.00734] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/23/2016] [Accepted: 04/20/2017] [Indexed: 05/19/2023]
Abstract
The arrangement of leaf material is critical in determining the light environment, and subsequently the photosynthetic productivity of complex crop canopies. However, links between specific canopy architectural traits and photosynthetic productivity across a wide genetic background are poorly understood for field grown crops. The architecture of five genetically diverse rice varieties-four parental founders of a multi-parent advanced generation intercross (MAGIC) population plus a high yielding Philippine variety (IR64)-was captured at two different growth stages using a method for digital plant reconstruction based on stereocameras. Ray tracing was employed to explore the effects of canopy architecture on the resulting light environment in high-resolution, whilst gas exchange measurements were combined with an empirical model of photosynthesis to calculate an estimated carbon gain and total light interception. To further test the impact of different dynamic light patterns on photosynthetic properties, an empirical model of photosynthetic acclimation was employed to predict the optimal light-saturated photosynthesis rate (Pmax ) throughout canopy depth, hypothesizing that light is the sole determinant of productivity in these conditions. First, we show that a plant type with steeper leaf angles allows more efficient penetration of light into lower canopy layers and this, in turn, leads to a greater photosynthetic potential. Second the predicted optimal Pmax responds in a manner that is consistent with fractional interception and leaf area index across this germplasm. However, measured Pmax , especially in lower layers, was consistently higher than the optimal Pmax indicating factors other than light determine photosynthesis profiles. Lastly, varieties with more upright architecture exhibit higher maximum quantum yield of photosynthesis indicating a canopy-level impact on photosynthetic efficiency.
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Affiliation(s)
- Alexandra J. Burgess
- Division of Plant and Crop Sciences, School of Biosciences, University of NottinghamLoughborough, UK
- Crops For the FutureSemenyih, Malaysia
| | - Renata Retkute
- School of Life Sciences, The University of WarwickCoventry, UK
| | - Tiara Herman
- School of Biosciences, University of Nottingham Malaysia CampusSemenyih, Malaysia
| | - Erik H. Murchie
- Division of Plant and Crop Sciences, School of Biosciences, University of NottinghamLoughborough, UK
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Rotundo JL, Cipriotti PA. Biological limits on nitrogen use for plant photosynthesis: a quantitative revision comparing cultivated and wild species. THE NEW PHYTOLOGIST 2017; 214:120-131. [PMID: 27943369 DOI: 10.1111/nph.14363] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2016] [Accepted: 10/28/2016] [Indexed: 06/06/2023]
Abstract
The relationship between leaf photosynthesis and nitrogen is a critical production function for ecosystem functioning. Cultivated species have been studied in terms of this relationship, focusing on improving nitrogen (N) use, while wild species have been studied to evaluate leaf evolutionary patterns. A comprehensive comparison of cultivated vs wild species for this relevant function is currently lacking. We hypothesize that cultivated species show increased carbon assimilation per unit leaf N area compared with wild species as associated with artificial selection for resource-acquisition traits. We compiled published data on light-saturated photosynthesis (Amax ) and leaf nitrogen (LNarea ) for cultivated and wild species. The relationship between Amax and LNarea was evaluated using a frontier analysis (90th percentile) to benchmark the biological limit of nitrogen use for photosynthesis. Carbon assimilation in relation to leaf N was not consistently higher in cultivated species; out of 14 cultivated species, only wheat, rice, maize and sorghum showed higher ability to use N for photosynthesis compared with wild species. Results indicate that cultivated species have not surpassed the biological limit on nitrogen use observed for wild species. Future increases in photosynthesis based on natural variation need to be assisted by bioengineering of key enzymes to increase crop productivity.
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Affiliation(s)
- José L Rotundo
- Facultad de Ciencias Agrarias, IICAR - UNR/CONICET, Zavalla, Santa Fe, Argentina
| | - Pablo A Cipriotti
- Depto. de Métodos Cuantitativos y Sistemas de Información - IFEVA, Facultad de Agronomía, UBA/CONICET, Buenos Aires, Argentina
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Ichiro T, Hiroki O, Takashi F, Riichi O. Light environment within a leaf. II. Progress in the past one-third century. JOURNAL OF PLANT RESEARCH 2016; 129:295-8. [PMID: 26961884 DOI: 10.1007/s10265-016-0814-3] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
Abstract
Studies directly related to light environments within a leaf, conduced mainly in the past one-third century, are reviewed. In particular, studies that revealed the profiles of light absorption and photosynthetic capacity are highlighted. Progress in this research field has been accelerated by devising innovative techniques. Roles of the main photosynthetic tissues, the palisade and spongy tissues, as the light guide and diffuser, respectively, are discussed. When the leaf is illuminated with diffuse light, light is absorbed more by the chloroplasts located near the illuminated surface. The meanings of the occupation of the mesophyll surfaces facing the intercellular spaces by chloroplasts and chloroplast movement are also discussed. The discrepancy between the light absorption profile and that of photosynthetic capacity is examined most intensively.
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Affiliation(s)
- Terashima Ichiro
- Department of Biological Sciences, School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-0033, Japan.
| | - Ooeda Hiroki
- Department of Biological Sciences, School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-0033, Japan
| | - Fujita Takashi
- Department of Biological Sciences, School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-0033, Japan
| | - Oguchi Riichi
- Graduate School of Life Sciences, Tohoku University, 6-3 Aoba, Sendai, 980-8578, Japan
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Tarvainen L, Lutz M, Räntfors M, Näsholm T, Wallin G. Increased Needle Nitrogen Contents Did Not Improve Shoot Photosynthetic Performance of Mature Nitrogen-Poor Scots Pine Trees. FRONTIERS IN PLANT SCIENCE 2016; 7:1051. [PMID: 27489553 PMCID: PMC4951524 DOI: 10.3389/fpls.2016.01051] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/21/2016] [Accepted: 07/05/2016] [Indexed: 05/12/2023]
Abstract
Numerous studies have shown that temperate and boreal forests are limited by nitrogen (N) availability. However, few studies have provided a detailed account of how carbon (C) acquisition of such forests reacts to increasing N supply. We combined measurements of needle-scale biochemical photosynthetic capacities and continuous observations of shoot-scale photosynthetic performance from several canopy positions with simple mechanistic modeling to evaluate the photosynthetic responses of mature N-poor boreal Pinus sylvestris to N fertilization. The measurements were carried out in August 2013 on 90-year-old pine trees growing at Rosinedalsheden research site in northern Sweden. In spite of a nearly doubling of needle N content in response to the fertilization, no effect on the long-term shoot-scale C uptake was recorded. This lack of N-effect was due to strong light limitation of photosynthesis in all investigated canopy positions. The effect of greater N availability on needle photosynthetic capacities was also constrained by development of foliar phosphorus (P) deficiency following N addition. Thus, P deficiency and accumulation of N in arginine appeared to contribute toward lower shoot-scale nitrogen-use efficiency in the fertilized trees, thereby additionally constraining tree-scale responses to increasing N availability. On the whole our study suggests that the C uptake response of the studied N-poor boreal P. sylvestris stand to enhanced N availability is constrained by the efficiency with which the additional N is utilized. This efficiency, in turn, depends on the ability of the trees to use the greater N availability for additional light capture. For stands that have not reached canopy closure, increase in leaf area following N fertilization would be the most effective way for improving light capture and C uptake while for mature stands an increased leaf area may have a rather limited effect on light capture owing to increased self-shading. This raises the question if N limitation in boreal forests acts primarily by constraining growth of young stands while the commonly recorded increase in stem growth of mature stands following N addition is primarily the result of altered allocation and only to a limited extent the result of increased stand C-capture.
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Affiliation(s)
- Lasse Tarvainen
- Department of Forest Ecology and Management, Swedish University of Agricultural SciencesUmeå, Sweden
- *Correspondence: Lasse Tarvainen
| | - Martina Lutz
- Department of Biological and Environmental Sciences, University of GothenburgGothenburg, Sweden
| | - Mats Räntfors
- Department of Biological and Environmental Sciences, University of GothenburgGothenburg, Sweden
| | - Torgny Näsholm
- Department of Forest Ecology and Management, Swedish University of Agricultural SciencesUmeå, Sweden
| | - Göran Wallin
- Department of Biological and Environmental Sciences, University of GothenburgGothenburg, Sweden
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