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Atay G, Holyavkin C, Can H, Arslan M, Topaloğlu A, Trotta M, Çakar ZP. Evolutionary engineering and molecular characterization of cobalt-resistant Rhodobacter sphaeroides. Front Microbiol 2024; 15:1412294. [PMID: 38993486 PMCID: PMC11236759 DOI: 10.3389/fmicb.2024.1412294] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2024] [Accepted: 06/12/2024] [Indexed: 07/13/2024] Open
Abstract
With its versatile metabolism including aerobic and anaerobic respiration, photosynthesis, photo-fermentation and nitrogen fixation, Rhodobacter sphaeroides can adapt to diverse environmental and nutritional conditions, including the presence of various stressors such as heavy metals. Thus, it is an important microorganism to study the molecular mechanisms of bacterial stress response and resistance, and to be used as a microbial cell factory for biotechnological applications or bioremediation. In this study, a highly cobalt-resistant and genetically stable R. sphaeroides strain was obtained by evolutionary engineering, also known as adaptive laboratory evolution (ALE), a powerful strategy to improve and characterize genetically complex, desired microbial phenotypes, such as stress resistance. For this purpose, successive batch selection was performed in the presence of gradually increased cobalt stress levels between 0.1-15 mM CoCl2 for 64 passages and without any mutagenesis of the initial population prior to selection. The mutant individuals were randomly chosen from the last population and analyzed in detail. Among these, a highly cobalt-resistant and genetically stable evolved strain called G7 showed significant cross-resistance against various stressors such as iron, magnesium, nickel, aluminum, and NaCl. Growth profiles and flame atomic absorption spectrometry analysis results revealed that in the presence of 4 mM CoCl2 that significantly inhibited growth of the reference strain, the growth of the evolved strain was unaffected, and higher levels of cobalt ions were associated with G7 cells than the reference strain. This may imply that cobalt ions accumulated in or on G7 cells, indicating the potential of G7 for cobalt bioremediation. Whole genome sequencing of the evolved strain identified 23 single nucleotide polymorphisms in various genes that are associated with transcriptional regulators, NifB family-FeMo cofactor biosynthesis, putative virulence factors, TRAP-T family transporter, sodium/proton antiporter, and also in genes with unknown functions, which may have a potential role in the cobalt resistance of R. sphaeroides.
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Affiliation(s)
- Güneş Atay
- Department of Molecular Biology and Genetics, Faculty of Science and Letters, Istanbul Technical University, İstanbul, Türkiye
- Dr. Orhan Öcalgiray Molecular Biology, Biotechnology and Genetics Research Center (İTÜ-MOBGAM), Istanbul Technical University, İstanbul, Türkiye
| | - Can Holyavkin
- Department of Molecular Biology and Genetics, Faculty of Science and Letters, Istanbul Technical University, İstanbul, Türkiye
- Dr. Orhan Öcalgiray Molecular Biology, Biotechnology and Genetics Research Center (İTÜ-MOBGAM), Istanbul Technical University, İstanbul, Türkiye
| | - Hanay Can
- Department of Molecular Biology and Genetics, Faculty of Science and Letters, Istanbul Technical University, İstanbul, Türkiye
- Dr. Orhan Öcalgiray Molecular Biology, Biotechnology and Genetics Research Center (İTÜ-MOBGAM), Istanbul Technical University, İstanbul, Türkiye
| | - Mevlüt Arslan
- Department of Molecular Biology and Genetics, Faculty of Science and Letters, Istanbul Technical University, İstanbul, Türkiye
- Dr. Orhan Öcalgiray Molecular Biology, Biotechnology and Genetics Research Center (İTÜ-MOBGAM), Istanbul Technical University, İstanbul, Türkiye
| | - Alican Topaloğlu
- Department of Molecular Biology and Genetics, Faculty of Science and Letters, Istanbul Technical University, İstanbul, Türkiye
- Dr. Orhan Öcalgiray Molecular Biology, Biotechnology and Genetics Research Center (İTÜ-MOBGAM), Istanbul Technical University, İstanbul, Türkiye
| | - Massimo Trotta
- IPCF-CNR Istituto per I processi Chimico-Fisici, Consiglio Nazionale delle Ricerche, Bari, Italy
| | - Zeynep Petek Çakar
- Department of Molecular Biology and Genetics, Faculty of Science and Letters, Istanbul Technical University, İstanbul, Türkiye
- Dr. Orhan Öcalgiray Molecular Biology, Biotechnology and Genetics Research Center (İTÜ-MOBGAM), Istanbul Technical University, İstanbul, Türkiye
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Shan B, Hao R, Zhang J, Ye Y, Li J, Xu H, Lu A. Exploring the mechanism of enhanced Cr(VI) removal by Lysinibacillus cavernae microcapsules loaded with synthetic nano-hydroxyapatite. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023; 30:106571-106584. [PMID: 37730979 DOI: 10.1007/s11356-023-29910-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2023] [Accepted: 09/12/2023] [Indexed: 09/22/2023]
Abstract
In this study, nano-scale hydroxyapatite (HAP) powder was successfully synthesized from waste eggshells and combined with Lysinibacillus cavernae CR-2 to form bio-microcapsules, which facilitated the enhanced removal of Cr(VI) from wastewater. The effects of various parameters, such as bio-microcapsule dosage, HAP dosage, and initial Cr(VI) concentration on Cr(VI) removal, were investigated. Under different treatment conditions, the Cr(VI) removal followed the order of LC@HAP (90.95%) > LC (78.15%) > Free-LC (75.61%) > HAP (6.56%) > NM (0.23%) at the Cr(VI) initial concentration of 50 mg L-1. Relative to other reaction systems, the LC@HAP treatment exhibited a considerable decrease in total Cr content in the solution, with removal rates surpassing 70%. Additionally, the bio-microcapsules maintained significant biological activity after reacting with Cr(VI). Further characterization using SEM, FTIR, XPS, and XRD revealed that the Cr(VI) removal mechanisms by bio-microcapsules primarily involved biological reduction and HAP adsorption. The adsorption of Cr(III) by HAP predominantly occurred through electrostatic interactions and surface complexation, accompanied by an ion exchange process between Cr(III) and Ca(II). Hence, bio-microcapsules, created by combining L. cavernae with HAP, represent a promising emerging material for the enhanced removal of Cr(VI) pollutants from wastewater.
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Affiliation(s)
- Bing Shan
- The Key Laboratory of Orogenic Belts and Crustal Evolution, School of Earth and Space Sciences, Peking University, Beijing, 100871, China
| | - Ruixia Hao
- The Key Laboratory of Orogenic Belts and Crustal Evolution, School of Earth and Space Sciences, Peking University, Beijing, 100871, China.
| | - Junman Zhang
- The Key Laboratory of Orogenic Belts and Crustal Evolution, School of Earth and Space Sciences, Peking University, Beijing, 100871, China
| | - Yubo Ye
- The Key Laboratory of Orogenic Belts and Crustal Evolution, School of Earth and Space Sciences, Peking University, Beijing, 100871, China
| | - Jiani Li
- The Key Laboratory of Orogenic Belts and Crustal Evolution, School of Earth and Space Sciences, Peking University, Beijing, 100871, China
| | - Hui Xu
- The Key Laboratory of Orogenic Belts and Crustal Evolution, School of Earth and Space Sciences, Peking University, Beijing, 100871, China
| | - Anhuai Lu
- The Key Laboratory of Orogenic Belts and Crustal Evolution, School of Earth and Space Sciences, Peking University, Beijing, 100871, China
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The periodic table of photosynthetic purple non-sulfur bacteria: intact cell-metal ions interactions. Photochem Photobiol Sci 2021; 21:101-111. [PMID: 34748197 DOI: 10.1007/s43630-021-00116-9] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2021] [Accepted: 10/12/2021] [Indexed: 10/19/2022]
Abstract
Photosynthetic purple non-sulfur bacteria (PNB) have been widely utilized as model organisms to study bacterial photosynthesis. More recently, the remarkable resistance of these microorganisms to several metals ions called particular interest. As a result, several research efforts were directed toward clarifying the interactions of metal ions with PNB. The mechanisms of metal ions active uptake and bioabsorption have been studied in detail, unveiling that PNB enable harvesting and removing various toxic ions, thus fostering applications in environmental remediation. Herein, we present the most important achievements in the understanding of intact cell-metal ions interactions and the approaches utilized to study such processes. Following, the application of PNB-metal ions interactions toward metal removal from contaminated environments is presented. Finally, the possible coupling of PNB with abiotic electrodes to obtain biohybrid electrochemical systems is proposed as a sustainable pathway to tune and enhance metal removal and monitoring.
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Su YQ, Yuan S, Guo YC, Tan YY, Mao HT, Cao Y, Chen YE. Highly efficient and sustainable removal of Cr (VI) in aqueous solutions by photosynthetic bacteria supplemented with phosphor salts. CHEMOSPHERE 2021; 283:131031. [PMID: 34134043 DOI: 10.1016/j.chemosphere.2021.131031] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2020] [Revised: 04/06/2021] [Accepted: 05/22/2021] [Indexed: 06/12/2023]
Abstract
Photosynthetic bacteria have flexible metabolisms and strong environmental adaptability, and require cheap, but plentiful, energy supplements, which all enable their use in Cr(VI)-remediation. In this study, the effects of culture conditions on the total Cr removal rate were investigated for a newly identified strain of Rhodobacter sphaeroides SC01. The subcellular distribution and Cr(VI) reduction ability of four different cellular fractions were evaluated by scanning electron microscopy and transmission electron microscopy. Experiments indicated that the optimal culture conditions for total Cr removal included a culture temperature of 35 °C, pH of 7.20, an NaCl concentration of 5 g L-1, a light intensity of 4000 lx, and an initial cell concentration (OD680) of 0.15. In addition, most Cr was found in the cell membrane in the form of Cr (III) after reduction, while cell membranes had the highest Cr(VI) reduction rate (99%) compared to other cellular components. In addition, the physical and chemical properties of SC01 cells were characterized by FTIR, XPS, and XRD analyses, confirming that Cr was successfully absorbed on bacterial cell surfaces. CrPO4‧6H2O and Cr5(P3O10)3 precipitates were particularly identified by XRD analysis. After screening supplementation with five phosphor salts, Cr(VI) reduction due to bioprecipitation was improved by the addition of Na4P2O7 and (NaPO3)6 salts, with the Cr(VI)-reduction rate combined with Na4P2O7 addition being 15% higher than that of the control. Thus, this study proposes a new Cr(VI)-removal strategy based on the combined use of photosynthetic bacteria and phosphor salts, which importantly increases its potential application in treating wastewater.
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Affiliation(s)
- Yan-Qiu Su
- College of Life Science, Sichuan Normal University, Chengdu, China.
| | - Shu Yuan
- College of Life Sciences, Sichuan Agricultural University, Ya'an, China
| | - Yuan-Cheng Guo
- College of Life Science, Sichuan Normal University, Chengdu, China
| | - Yong-Yao Tan
- College of Life Science, Sichuan Normal University, Chengdu, China
| | - Hao-Tian Mao
- College of Life Sciences, Sichuan Agricultural University, Ya'an, China
| | - Yi Cao
- Microbiology and Metabolic Engineering of Key Laboratory of Sichuan Province, College of Life Sciences, Sichuan University, Chengdu, China
| | - Yang-Er Chen
- College of Life Sciences, Sichuan Agricultural University, Ya'an, China.
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Italiano F, Agostiano A, Belviso BD, Caliandro R, Carrozzini B, Comparelli R, Melillo MT, Mesto E, Tempesta G, Trotta M. Interaction between the photosynthetic anoxygenic microorganism Rhodobacter sphaeroides and soluble gold compounds. From toxicity to gold nanoparticle synthesis. Colloids Surf B Biointerfaces 2018; 172:362-371. [PMID: 30189387 DOI: 10.1016/j.colsurfb.2018.06.010] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2017] [Accepted: 06/06/2018] [Indexed: 02/08/2023]
Abstract
Biological processes using microorganisms for nanoparticle synthesis are appealing as eco-friendly nanofactories. The response of the photosynthetic bacterium Rhodobacter sphaeroides to gold exposure and its reducing capability of Au(III) to produce stable gold nanoparticles (AuNPs), using metabolically active bacteria and quiescent biomass, is reported in this study. In the former case, bacterial cells were grown in presence of gold chloride at physiological pH. Gold exposure was found to cause a significant increase of the lag-phase duration at concentrations higher than 10 μM, suggesting the involvement of a resistance mechanism activated by Au(III). Transmission Electron Microscopy (TEM) and Scanning Electron Microscopy/Energy Dispersive X-ray Spectrometry (SEM/EDS) analysis of bacterial cells confirmed the extracellular formation of AuNPs. Further studies were carried out on metabolically quiescent biomass incubated with gold chloride solution. The biosynthesized AuNPs were spherical in shape with an average size of 10 ± 3 nm, as analysed by Transmission Electron Microscopy (TEM). The nanoparticles were hydrophilic and stable against aggregation for several months. In order to identify the functional groups responsible for the reduction and stabilization of nanoparticles, AuNPs were analysed by Attenuated Total Reflectance-Fourier Transform Infrared (ATR-FTIR) spectroscopy, X-ray Photoelectron Spectroscopy (XPS), X-ray Fluorescence Spectrometry (XRF) and X-ray Absorption Spectroscopy (XAS) measurements. The obtained results indicate that gold ions bind to functional groups of cell membrane and are subsequently reduced by reducing sugars to gold nanoparticles and capped by a protein/peptide coat. Gold nanoparticles demonstrated to be efficient homogeneous catalysts in the degradation of nitroaromatic compounds.
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Affiliation(s)
- Francesca Italiano
- CNR - Istituto per i Processi Chimico-Fisici, Sezione di Bari, via E. Orabona, 4, 70126, Bari, Italy.
| | - Angela Agostiano
- CNR - Istituto per i Processi Chimico-Fisici, Sezione di Bari, via E. Orabona, 4, 70126, Bari, Italy; Università degli Studi di Bari "Aldo Moro", Dipartimento di Chimica, via E. Orabona, 4, 70126, Bari, Italy
| | | | - Rocco Caliandro
- CNR - Istituto di Cristallografia, via G. Amendola, 122/O, 70126, Bari, Italy
| | | | - Roberto Comparelli
- CNR - Istituto per i Processi Chimico-Fisici, Sezione di Bari, via E. Orabona, 4, 70126, Bari, Italy
| | - Maria Teresa Melillo
- CNR - Istituto per la Protezione Sostenibile delle Piante, Sezione di Bari, Via G. Amendola, 122/D, 70126, Bari, Italy
| | - Ernesto Mesto
- Università degli Studi di Bari "Aldo Moro", Dipartimento di Scienze della Terra e Geoambientali, Via E. Orabona 4, 70126, Bari, Italy
| | - Gioacchino Tempesta
- Università degli Studi di Bari "Aldo Moro", Dipartimento di Scienze della Terra e Geoambientali, Via E. Orabona 4, 70126, Bari, Italy
| | - Massimo Trotta
- CNR - Istituto per i Processi Chimico-Fisici, Sezione di Bari, via E. Orabona, 4, 70126, Bari, Italy
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Volpicella M, Costanza A, Palumbo O, Italiano F, Claudia L, Placido A, Picardi E, Carella M, Trotta M, Ceci LR. Rhodobacter sphaeroidesadaptation to high concentrations of cobalt ions requires energetic metabolism changes. FEMS Microbiol Ecol 2014; 88:345-57. [DOI: 10.1111/1574-6941.12303] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2013] [Revised: 02/05/2014] [Accepted: 02/10/2014] [Indexed: 12/01/2022] Open
Affiliation(s)
- Mariateresa Volpicella
- Department of Biosciences, Biotechnologies and Biopharmaceutics; University of Bari; Bari Italy
| | - Alessandra Costanza
- Department of Biosciences, Biotechnologies and Biopharmaceutics; University of Bari; Bari Italy
| | - Orazio Palumbo
- Medical Genetics Unit; IRCCS Casa Sollievo della Sofferenza; San Giovanni Rotondo Italy
| | - Francesca Italiano
- Institute for Chemical-Physical Processes; Italian National Research Council (CNR); Bari Italy
| | - Leoni Claudia
- Department of Biosciences, Biotechnologies and Biopharmaceutics; University of Bari; Bari Italy
- Institute for Biomembranes and Bioenergetics; CNR; Bari Italy
| | - Antonio Placido
- Institute for Biomembranes and Bioenergetics; CNR; Bari Italy
| | - Ernesto Picardi
- Department of Biosciences, Biotechnologies and Biopharmaceutics; University of Bari; Bari Italy
- Institute for Biomembranes and Bioenergetics; CNR; Bari Italy
- National Institute of Biostructures and Biosystems (INBB); Roma Italy
| | - Massimo Carella
- Medical Genetics Unit; IRCCS Casa Sollievo della Sofferenza; San Giovanni Rotondo Italy
| | - Massimo Trotta
- Institute for Chemical-Physical Processes; Italian National Research Council (CNR); Bari Italy
| | - Luigi R. Ceci
- Institute for Biomembranes and Bioenergetics; CNR; Bari Italy
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Calvano CD, Italiano F, Catucci L, Agostiano A, Cataldi TRI, Palmisano F, Trotta M. The lipidome of the photosynthetic bacterium Rhodobacter sphaeroides R26 is affected by cobalt and chromate ions stress. Biometals 2013; 27:65-73. [PMID: 24249151 DOI: 10.1007/s10534-013-9687-2] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2013] [Accepted: 11/10/2013] [Indexed: 02/07/2023]
Abstract
A detailed characterization of membrane lipids of the photosynthetic bacterium Rhodobacter (R.) sphaeroides was accomplished by thin-layer chromatography coupled with matrix-assisted laser desorption ionization mass spectrometry. Such an approach allowed the identification of the main membrane lipids belonging to different classes, namely cardiolipins (CLs), phosphatidylethanolamines, phosphatidylglycerols (PGs), phosphatidylcholines, and sulfoquinovosyldiacylglycerols (SQDGs). Thus, the lipidomic profile of R. sphaeroides R26 grown in abiotic stressed conditions by exposure to bivalent cobalt cation and chromate oxyanion, was investigated. Compared to bacteria grown under control conditions, significant lipid alterations take place under both stress conditions; cobalt exposure stress results in the relative content increase of CLs and SQDGs, most likely compensating the decrease in PGs content, whereas chromate stress conditions result in the relative content decrease of both PGs and SQDGs, leaving CLs unaltered. For the first time, the response of R. sphaeroides to heavy metals as Co(2+) and CrO4 (2-) is reported and changes in membrane lipid profiles were rationalised.
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Affiliation(s)
- Cosima Damiana Calvano
- Dipartimento di Chimica, Università degli Studi di Bari Aldo Moro, Via Orabona 4, 70126, Bari, Italy
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