Evaluation of reference genes and expression of key genes involved in the isoprenoid metabolic pathway of rice leaves after infection by the Southern rice black-streaked dwarf virus

A systematic review of southern rice black-streaked dwarf virus in the age of omics

Southern rice black-streaked dwarf virus (SRBSDV) is one of the most damaging rice viruses. The virus decreases rice quality and yield, and poses a serious threat to food security. From this perspective, this review performed a survey of published studies in recent years to understand the current status of SRBSDV and white-backed planthopper (WBPH, Sogatella furcifera) transmission processes in rice. Recent studies have shown that the interactions between viral virulence proteins and rice susceptibility factors shape the transmission of SRBSDV. Moreover, the transmission of SRBSDV is influenced by the interactions between viral virulence proteins and S. furcifera susceptibility factors. This review focused on the molecular mechanisms of key genes or proteins associated with SRBSDV infection in rice via the S. furcifera vector, and the host defense response mechanisms against viral infection. A sustainable control strategy using RNAi was summarized to address this pest. Finally, we also present a model for screening anti-SRBSDV inhibitors using viral proteins as targets. © 2023 Society of Chemical Industry.

Evaluation of reference genes for miRNA and mRNA normalization in tobacco infected with PVYNTN, PVYN-Wi and PVYZ-NTN strains

This is the first report on identification of the most suitable reference genes for RT-qPCR quantification of miRNA and mRNA in tobacco response to the prevalent recombinant potato virus Y (PVY) strains PVY^NTN, PVY^N-Wi and the newly identified PVY^Z-NTN. Of 10 tested genes, the expression levels of neIF5C, nU2af and nPP2A were the most stable in samples taken from non-inoculated, mock-inoculated, and infected plants at three days post-inoculation (dpi) and 14 dpi. While the homologues of eIF5 were most stably expressed in tobacco in this study and in potato in our previous study (Yin et al., 2021) following inoculation with the same three PVY strains, the homologues of other two genes PP2A and U2af were stably expressed only in tobacco but unstable in potato. The tobacco homologue of PP2A, which was the most stably expressed one in tobacco interaction with PVY^NTN, PVY^N-Wi and PVY^Z-NTN strains in this study, was the least stable one in tobacco interaction with the non-recombinant PVY^O strain in a previous study (Baek et al., 2017). This study provides evidence on the influence of host species on expression of housekeeping genes and points out virus strain as a new factor influencing expression stability of reference gene. Caution should be taken when choosing reference genes in gene expression study in Solanaceae hosts response to different PVY strains.

Changes in Visual and Olfactory Cues in Virus-Infected Host Plants Alter the Behavior of Bemisia tabaci

The cucurbit chlorotic yellows virus (CCYV) has caused serious damage to melon crops in many countries in recent years. This plant virus is exclusively transmitted by the whitefly Bemisia tabaci (Gennadius) in a semi-persistent mode. Previous studies have shown that both persistent and non-persistent viruses can affect the orientation and performance of insect vectors, through changing host phenotype or interacting with insect vectors directly to facilitate the spread of viruses. However, how CCYV affects host-plant selection by B. tabaci has not been reported. In this study, we investigated the visual and olfactory preferences of B. tabaci between healthy and CCYV-infected host plants Cucumis sativus (Cucurbitaceae). Volatile profiles of healthy and CCYV-infected C. sativus plants were analyzed using gas chromatography-mass spectrometry (GC-MS). In the choice assay, whiteflies preferred to settle on CCYV-infected C. sativus seedlings. However, the concentrations of total volatiles and terpenes in C. sativus plants decreased after CCYV infection. Interestingly, in the Y-tube assay and vision preference test, whitefly B. tabaci adults showed significant visual preference to CCYV-infected host but showed olfactory preference to healthy plants. These results indicated that CCYV infection in plants differently affected the visual and olfactory-mediated orientation behaviors of vector whiteflies and implied that visual cues could play a more important role than olfactory cues in whiteflies in locating CCYV-infected host plants.

Reference gene selection for miRNA and mRNA normalization in potato in response to potato virus Y

This was the first report on evaluating candidate reference genes for quantifying the expression profiles of both coding (e.g., mRNA) and non-coding (e.g., miRNA) genes in potato response to potato virus Y (PVY) inoculation. The reverse transcription-quantitative real-time polymerase chain reaction (RT-qPCR) method was employed to quantify the expression profiles of eight selected candidate reference genes; their expression stability was analyzed by four statistical algorithms, i.e., geNorm, BestKeeper, NormFinder and RefFinder. The most stable reference genes were sEF1a, sTUBb and seIF5 with a high stability. The least stable ones were sPP2A, sSUI1 and sGAPDH. The same reference gene allows for normalization of both miRNA and mRNA levels from a single RNA sample using cDNAs synthesized in a single RT reaction, in which a stem-loop primer was used for miRNAs and the oligo (dT) for mRNAs.