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Dotsenko VV, Bespalov AV, Sinotsko AE, Temerdashev AZ, Vasilin VK, Varzieva EA, Strelkov VD, Aksenov NA, Aksenova IV. 6-Amino-4-aryl-7-phenyl-3-(phenylimino)-4,7-dihydro-3H-[1,2]dithiolo[3,4-b]pyridine-5-carboxamides: Synthesis, Biological Activity, Quantum Chemical Studies and In Silico Docking Studies. Int J Mol Sci 2024; 25:769. [PMID: 38255843 PMCID: PMC10815501 DOI: 10.3390/ijms25020769] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Received: 12/05/2023] [Revised: 12/31/2023] [Accepted: 01/05/2024] [Indexed: 01/24/2024] Open
Abstract
New [1,2]dithiolo[3,4-b]pyridine-5-carboxamides were synthesized through the reaction of dithiomalondianilide (N,N'-diphenyldithiomalondiamide) with 3-aryl-2-cyanoacrylamides or via a three-component reaction involving aromatic aldehydes, cyanoacetamide and dithiomalondianilide in the presence of morpholine. The structure of 6-amino-4-(2,4-dichloro- phenyl)-7-phenyl-3-(phenylimino)-4,7-dihydro-3H-[1,2]dithiolo[3,4-b]pyridine-5-carboxamide was confirmed using X-ray crystallography. To understand the reaction mechanism in detail, density functional theory (DFT) calculations were performed with a Grimme B97-3c composite computational scheme. The results revealed that the rate-limiting step is a cyclization process leading to the closure of the 1,4-dihydropyridine ring, with an activation barrier of 28.8 kcal/mol. Some of the dithiolo[3,4-b]pyridines exhibited moderate herbicide safening effects against 2,4-D. Additionally, ADMET (Absorption, Distribution, Metabolism, Excretion, Toxicity) parameters were calculated and molecular docking studies were performed to identify potential protein targets.
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Affiliation(s)
- Victor V. Dotsenko
- Department of Organic Chemistry and Technologies, Kuban State University, 149 Stavropolskaya St., 350040 Krasnodar, Russia; (A.V.B.); (E.A.V.)
- Department of Chemistry, North Caucasus Federal University, 1a Pushkin St., 355017 Stavropol, Russia; (N.A.A.); (I.V.A.)
| | - Alexander V. Bespalov
- Department of Organic Chemistry and Technologies, Kuban State University, 149 Stavropolskaya St., 350040 Krasnodar, Russia; (A.V.B.); (E.A.V.)
| | - Anna E. Sinotsko
- Department of Organic Chemistry and Technologies, Kuban State University, 149 Stavropolskaya St., 350040 Krasnodar, Russia; (A.V.B.); (E.A.V.)
| | - Azamat Z. Temerdashev
- Department of Analytical Chemistry, Kuban State University, 149 Stavropolskaya St., 350040 Krasnodar, Russia;
| | - Vladimir K. Vasilin
- Department of Bioorganic Chemistry, Kuban State Technological University, 2 Moskovskaya St., 350072 Krasnodar, Russia
| | - Ekaterina A. Varzieva
- Department of Organic Chemistry and Technologies, Kuban State University, 149 Stavropolskaya St., 350040 Krasnodar, Russia; (A.V.B.); (E.A.V.)
| | - Vladimir D. Strelkov
- Department of Organic Chemistry and Technologies, Kuban State University, 149 Stavropolskaya St., 350040 Krasnodar, Russia; (A.V.B.); (E.A.V.)
| | - Nicolai A. Aksenov
- Department of Chemistry, North Caucasus Federal University, 1a Pushkin St., 355017 Stavropol, Russia; (N.A.A.); (I.V.A.)
| | - Inna V. Aksenova
- Department of Chemistry, North Caucasus Federal University, 1a Pushkin St., 355017 Stavropol, Russia; (N.A.A.); (I.V.A.)
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Dotsenko VV, Sinotsko AE, Strelkov VD, Varzieva EA, Russkikh AA, Levchenko AG, Temerdashev AZ, Aksenov NA, Aksenova IV. Alkyl 4-Aryl-6-amino-7- phenyl-3-(phenylimino)-4,7-dihydro- 3H-[1,2]dithiolo[3,4-b]pyridine-5-carboxylates: Synthesis and Agrochemical Studies. Molecules 2023; 28:molecules28020609. [PMID: 36677666 PMCID: PMC9864349 DOI: 10.3390/molecules28020609] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Academic Contribution Register] [Received: 12/11/2022] [Revised: 01/02/2023] [Accepted: 01/04/2023] [Indexed: 01/11/2023] Open
Abstract
The reaction between dithiomalondianilide (N,N'-diphenyldithiomalondiamide) and alkyl 3-aryl-2-cyanoacrylates in the presence of morpholine in the air atmosphere leads to the formation of alkyl 6-amino-4-aryl-7-phenyl-3-(phenylimino)-4,7-dihydro-3H-[1,2]dithiolo[3,4-b]- pyridine-5-carboxylates in 37-72% yields. The same compounds were prepared in 23-65% yields by ternary condensation of aromatic aldehydes, ethyl(methyl) cyanoacetate and dithiomalondianilide. The reaction mechanism is discussed. The structure of ethyl 6-amino-4-(4-methoxyphenyl)-7-phenyl-3-(phenylimino)-4,7-dihydro-3H-[1,2]dithiolo[3,4-b]pyridine-5-carboxylate was confirmed by X-ray crystallography. Two of the prepared compounds showed a moderate growth-stimulating effect on sunflower seedlings. Three of the new compounds were recognized as strong herbicide safeners with respect to herbicide 2,4-D in the laboratory and field experiments on sunflower.
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Affiliation(s)
- Victor V. Dotsenko
- Department of Organic Chemistry and Technologies, Kuban State University, 350040 Krasnodar, Russia
- Department of Chemistry, North Caucasus Federal University, 355017 Stavropol, Russia
- Correspondence:
| | - Anna E. Sinotsko
- Department of Organic Chemistry and Technologies, Kuban State University, 350040 Krasnodar, Russia
| | - Vladimir D. Strelkov
- Department of Organic Chemistry and Technologies, Kuban State University, 350040 Krasnodar, Russia
| | - Ekaterina A. Varzieva
- Department of Organic Chemistry and Technologies, Kuban State University, 350040 Krasnodar, Russia
| | - Alena A. Russkikh
- Department of Organic Chemistry and Technologies, Kuban State University, 350040 Krasnodar, Russia
| | - Arina G. Levchenko
- Department of Organic Chemistry and Technologies, Kuban State University, 350040 Krasnodar, Russia
| | - Azamat Z. Temerdashev
- Department of Analytical Chemistry, Kuban State University, 350040 Krasnodar, Russia
| | - Nicolai A. Aksenov
- Department of Chemistry, North Caucasus Federal University, 355017 Stavropol, Russia
| | - Inna V. Aksenova
- Department of Chemistry, North Caucasus Federal University, 355017 Stavropol, Russia
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The Reactions of N,N'-Diphenyldithiomalondiamide with Arylmethylidene Meldrum's Acids. Int J Mol Sci 2022; 23:ijms232415997. [PMID: 36555639 PMCID: PMC9785638 DOI: 10.3390/ijms232415997] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Academic Contribution Register] [Received: 11/09/2022] [Revised: 12/08/2022] [Accepted: 12/11/2022] [Indexed: 12/23/2022] Open
Abstract
The Michael addition reaction between dithiomalondianilide (N,N'-diphenyldithiomalondiamide) and arylmethylidene Meldrum's acids, accompanied by subsequent heterocyclization, was investigated along with factors affecting the mixture composition of the obtained products. The plausible mechanism includes the formation of stable Michael adducts which, under the studied conditions, undergo further transformations to yield corresponding N-methylmorpholinium 4-aryl-6-oxo-3-(N-phenylthio-carbamoyl)-1,4,5,6-tetrahydropyridin-2-thiolates and their oxidation derivatives, 4,5-dihydro-3H-[1,2]dithiolo[3,4-b]pyridin-6(7H)-ones. The structure of one such product, N-methylmorpholinium 2,2-dimethyl-5-(1-(2-nitrophenyl)-3-(phenylamino)-2-(N-phenylthiocarbamoyl)-3-thioxopropyl)-4-oxo-4H-1,3-dioxin-6-olate, was confirmed via X-ray crystallography.
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Dotsenko VV, Sinotsko AE, Varzieva EA, Chigorina EA, Aksenov NA, Aksenova IV. N,N′-Diphenyldithiomalonamide as Methylene Active Thioamide: A First Synthesis of Stable Michael Adducts. RUSS J GEN CHEM+ 2022. [DOI: 10.1134/s107036322211041x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Indexed: 12/15/2022]
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Sinotsko AE, Bespalov AV, Pashchevskaya NV, Dotsenko VV, Aksenov NA, Aksenova IV. N, N'-Diphenyldithiomalonodiamide: Structural Features, Acidic Properties, and In Silico Estimation of Biological Activity. RUSS J GEN CHEM+ 2021; 91:2136-2150. [PMID: 34934303 PMCID: PMC8680065 DOI: 10.1134/s1070363221110037] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Academic Contribution Register] [Received: 08/14/2021] [Revised: 08/14/2021] [Accepted: 09/18/2021] [Indexed: 11/25/2022]
Abstract
The spectral characteristics of dithiomalondianilide (N,N'-diphenyldithiomalonodiamide) were studied, and the dissociation constant was determined by potentiometric titration. Quantum-chemical methods at the B3LYP-D3BJ/6-311+G (2d,p) level were used to calculate the molecular geometry and vibrational spectra of the most stable tautomeric forms of dithiomalondianilide. The bioavailability parameters were calculated, and possible protein targets were predicted by the protein ligand docking method.
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Affiliation(s)
| | | | | | - V. V. Dotsenko
- Kuban State University, 350040 Krasnodar, Russia
- North Caucasus Federal University, 355009 Stavropol, Russia
| | - N. A. Aksenov
- North Caucasus Federal University, 355009 Stavropol, Russia
| | - I. V. Aksenova
- North Caucasus Federal University, 355009 Stavropol, Russia
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Izmest’ev AN, Vasileva DA, Melnikova EK, Kolotyrkina NG, Borisova IA, Kravchenko AN, Gazieva GA. Skeletal rearrangement of arylmethylideneimidazo[4,5-e]thiazolo[3,2-b]-1,2,4-triazine-2,7-diones in the synthesis of the corresponding imidazo[4,5-e]thiazolo[2,3-c]-1,2,4-triazine-2,8-diones. NEW J CHEM 2019. [DOI: 10.1039/c8nj05058a] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Academic Contribution Register] [Indexed: 12/31/2022]
Abstract
The synthesis of benzylideneimidazo[4,5-e]thiazolo[2,3-c]- 1,2,4-triazines via an alkali-induced skeletal rearrangement of imidazo[4,5-e]thiazolo[3,2-b]-1,2,4-triazines is reported.
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Affiliation(s)
- Alexei N. Izmest’ev
- N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences
- Moscow 119991
- Russian Federation
| | - Darya A. Vasileva
- N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences
- Moscow 119991
- Russian Federation
- D.I. Mendeleev University of Chemical Technology of Russia
- Moscow 125047
| | - Elizaveta K. Melnikova
- A.N. Nesmeyanov Institute of Organoelement Compounds
- Moscow 119991
- Russian Federation
- Lomonosov Moscow State University
- Moscow 119991
| | - Natalya G. Kolotyrkina
- N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences
- Moscow 119991
- Russian Federation
| | - Irina A. Borisova
- N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences
- Moscow 119991
- Russian Federation
| | - Angelina N. Kravchenko
- N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences
- Moscow 119991
- Russian Federation
| | - Galina A. Gazieva
- N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences
- Moscow 119991
- Russian Federation
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Khamidullina L, Obydennov K, Slepukhin P, Morzherin Y. Crystal structure of (2 Z)-2-{(5 Z)-5-[3-fluoro-2-(4-phenylpiperidin-1-yl)benzylidene]-4-oxo-3-( p-tolyl)-1,3-thiazolidin-2-ylidene}- N-( p-tolyl)ethanethioamide dimethyl sulfoxide monosolvate. Acta Crystallogr E Crystallogr Commun 2015; 71:o745-6. [PMID: 26594454 PMCID: PMC4647368 DOI: 10.1107/s2056989015016850] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Academic Contribution Register] [Received: 08/18/2015] [Accepted: 09/08/2015] [Indexed: 05/28/2023]
Abstract
The title compound, C37H34FN3OS2·C2H6OS, was obtained by the Knoevenagel condensation. The thiazolidine ring is essentially planar (r.m.s. deviation = 0.025 Å) and forms dihedral angles of 4.2 (3), 68.60 (14) and 39.57 (15)° with the attached thioamide group, p-tolyl group benzene ring and fluoro-substituted benzene ring, respectively. The exocyclic double bonds are in a Z configuration. In the crystal, the dimethyl sulfoxide solvent molecule is connected to the main molecule via an N—H⋯O hydrogen bond. Weak C—H⋯O hydrogen bonds link the components of the structure into a two-dimensional network parallel to (10-1). Weak intramolecular C—H⋯S hydrogen bonds are also observed. The crystal is an inversion twin with a ratio of twin components 0.78 (2):0.22 (6).
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