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Alirezapour F, Keshavarz Y, Minaeifar AA, Khanmohammadi A. Structural analysis and electronic properties of transition metal ions (Ni2+, Fe2+, Mn+ and Co+) with psoralen biomolecule as an anticancer drug. J Organomet Chem 2022. [DOI: 10.1016/j.jorganchem.2022.122606] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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2
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Alirezapour F, Bamdad K, Khanmohammadi A, Ebrahimi N. A computational study on acetaminophen drug complexed with Mn +, Fe 2+, Co +, Ni 2+, and Cu + ions: structural analysis, electronic properties, and solvent effects. J Mol Model 2022; 28:302. [PMID: 36066774 DOI: 10.1007/s00894-022-05305-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2022] [Accepted: 08/30/2022] [Indexed: 11/24/2022]
Abstract
In the present research, the cation-π interactions in acetaminophen-M complexes (M = Mn+, Fe2+, Co+, Ni2+, and Cu+) are investigated using density functional theory (DFT/ωB97XD) in the gas phase and solution. The results show that the absolute values of energy are reduced in going from the gas phase to the solution. Based on the obtained data, the complexes in water are the most stable. The natural bond orbital (NBO) and the atoms in molecules (AIM) analyses are also applied to achieve more details about the nature of interactions. These results are useful for understanding the role of the drug-receptor interactions in the complexes. According to AIM outcomes, the cation-π interactions are the closed-shell and may indicate the partially covalent nature in the complexes. A comprehensive analysis is also performed on the conceptual DFT parameters of the complexes to evaluate their electronic properties. Our findings show increasing the stability and decreasing the reactivity of the complexes in the solution phase with respect to the gas phase. These interactions are ubiquitous in biological systems, and their importance in theoretical models led us to study such important interactions. The results of this study may be useful for the design and synthesis of a variety of supramolecular complexes with the desired properties.
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Affiliation(s)
- Fahimeh Alirezapour
- Department of Chemistry, Payame Noor University (PNU), P.O. Box 19395-4697, Tehran, Iran.
| | - Kourosh Bamdad
- Department of Chemistry, Payame Noor University (PNU), P.O. Box 19395-4697, Tehran, Iran
| | - Azadeh Khanmohammadi
- Department of Chemistry, Payame Noor University (PNU), P.O. Box 19395-4697, Tehran, Iran
| | - Narjes Ebrahimi
- Department of Chemistry, Payame Noor University (PNU), P.O. Box 19395-4697, Tehran, Iran
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3
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Bobby Kannan M, Rahuma M, Khakbaz H, Melchers R. Antipsychotic drug waste: A potential corrosion inhibitor for mild steel in the oil and gas industry. WASTE MANAGEMENT (NEW YORK, N.Y.) 2022; 145:38-47. [PMID: 35500320 DOI: 10.1016/j.wasman.2022.04.029] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/13/2021] [Revised: 04/03/2022] [Accepted: 04/22/2022] [Indexed: 06/14/2023]
Abstract
In this study, the corrosion inhibition efficiency of thioridazine hydrochloride (TH), an antipsychotic drug, on mild steel (commonly used pipeline material in the oil and gas industry) in 1 M hydrochloric acid (HCl) was evaluated using electrochemical techniques and weight loss method. Electrochemical impedance spectroscopy (EIS) results suggest that TH significantly enhances the polarization resistance (Rp) of mild steel. Similarly, potentiodynamic polarization results showed that the corrosion current density (icorr) of mild steel decreased significantly with addition of TH. To understand the long-term effect of TH, mild steel was tested for 7 days in 100 ppm TH containing electrolyte. EIS results showed that the Rp did not change significantly after 24 h exposure as compared to 2 h exposure; whereas the Rp increased by 28% after 7-day exposure. Weight loss measurements revealed that the inhibition efficiency of TH is remarkably high (98.8%) after 7-day exposure. The adsorption free energy calculation suggests that at the initial stage (1-day) of mild steel exposure, TH was physically adsorbed onto the surface. However, at a later stage (7- day) the binding of TH was chemical, and hence the corrosion protection increased with increase in the exposure period. As compared to the wide range of corrosion inhibitors reported in the literature, TH has shown to be highly effective for mild steel. Thus, it can be suggested that TH drug waste is a potential corrosion inhibitor for mild steel pipelines in the oil and gas industry.
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Affiliation(s)
- M Bobby Kannan
- Discipline of Chemical Engineering, College of Science & Engineering, James Cook University, Townsville, Queensland 4811, Australia; Centre for Infrastructure Performance and Reliability, School of Engineering, University of Newcastle, Callaghan, New South Wales 2308, Australia.
| | - Mohamed Rahuma
- Discipline of Chemical Engineering, College of Science & Engineering, James Cook University, Townsville, Queensland 4811, Australia
| | - Hadis Khakbaz
- Discipline of Chemical Engineering, College of Science & Engineering, James Cook University, Townsville, Queensland 4811, Australia
| | - Robert Melchers
- Centre for Infrastructure Performance and Reliability, School of Engineering, University of Newcastle, Callaghan, New South Wales 2308, Australia
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Geng H, Zhong QZ, Li J, Lin Z, Cui J, Caruso F, Hao J. Metal Ion-Directed Functional Metal-Phenolic Materials. Chem Rev 2022; 122:11432-11473. [PMID: 35537069 DOI: 10.1021/acs.chemrev.1c01042] [Citation(s) in RCA: 84] [Impact Index Per Article: 42.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
Metal ions are ubiquitous in nature and play significant roles in assembling functional materials in fields spanning chemistry, biology, and materials science. Metal-phenolic materials are assembled from phenolic components in the presence of metal ions through the formation of metal-organic complexes. Alkali, alkali-earth, transition, and noble metal ions as well as metalloids interacting with phenolic building blocks have been widely exploited to generate diverse hybrid materials. Despite extensive studies on the synthesis of metal-phenolic materials, a comprehensive summary of how metal ions guide the assembly of phenolic compounds is lacking. A fundamental understanding of the roles of metal ions in metal-phenolic materials engineering will facilitate the assembly of materials with specific and functional properties. In this review, we focus on the diversity and function of metal ions in metal-phenolic material engineering and emerging applications. Specifically, we discuss the range of underlying interactions, including (i) cation-π, (ii) coordination, (iii) redox, and (iv) dynamic covalent interactions, and highlight the wide range of material properties resulting from these interactions. Applications (e.g., biological, catalytic, and environmental) and perspectives of metal-phenolic materials are also highlighted.
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Affiliation(s)
- Huimin Geng
- Key Laboratory of Colloid and Interface Chemistry of the Ministry of Education, School of Chemistry and Chemical Engineering, and the State Key Laboratory of Microbial Technology, Shandong University, Jinan, Shandong 250100, China
| | - Qi-Zhi Zhong
- Key Laboratory of Colloid and Interface Chemistry of the Ministry of Education, School of Chemistry and Chemical Engineering, and the State Key Laboratory of Microbial Technology, Shandong University, Jinan, Shandong 250100, China.,Department of Chemical Engineering, The University of Melbourne, Parkville, Victoria 3010, Australia
| | - Jianhua Li
- Department of Biomaterials, School and Hospital of Stomatology, Cheeloo College of Medicine, Shandong University, Jinan 250012, China
| | - Zhixing Lin
- Department of Chemical Engineering, The University of Melbourne, Parkville, Victoria 3010, Australia
| | - Jiwei Cui
- Key Laboratory of Colloid and Interface Chemistry of the Ministry of Education, School of Chemistry and Chemical Engineering, and the State Key Laboratory of Microbial Technology, Shandong University, Jinan, Shandong 250100, China
| | - Frank Caruso
- Department of Chemical Engineering, The University of Melbourne, Parkville, Victoria 3010, Australia
| | - Jingcheng Hao
- Key Laboratory of Colloid and Interface Chemistry of the Ministry of Education, School of Chemistry and Chemical Engineering, and the State Key Laboratory of Microbial Technology, Shandong University, Jinan, Shandong 250100, China
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Iwasaki T, Hirooka Y, Takaya H, Honma T, Nozaki K. Lithium Hexaphenylrhodate(III) and -Iridate(III): Structure in the Solid State and in Solution. Organometallics 2021. [DOI: 10.1021/acs.organomet.1c00248] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Takanori Iwasaki
- Department of Chemistry and Biotechnology, Graduate School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan
| | - Yuko Hirooka
- Department of Chemistry and Biotechnology, Graduate School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan
| | - Hikaru Takaya
- Institute of Chemical Research, Kyoto University, Gokashou, Uji, Kyoto 611-0011, Japan
- Department of Photo-Molecular Science, Institute for Molecular Science, 38 Nishigo-Naka, Myodaiji, Okazaki, Aichi 444-8585, Japan
| | - Tetsuo Honma
- Japan Synchrotron Radiation Research Institute (JASRI, SPring-8), Sayo, Hyogo 679-5198, Japan
| | - Kyoko Nozaki
- Department of Chemistry and Biotechnology, Graduate School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan
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Alirezapour F, Khanmohammadi A. Theoretical study on the interaction of phenylalaninal with group
IA
(Li
+
, Na
+
, K
+
) and
IIA
(Be
2+
, Mg
2+
, Ca
2+
) metal cations. J CHIN CHEM SOC-TAIP 2021. [DOI: 10.1002/jccs.202000383] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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7
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Dai WC, Yang B, Xu SH, Wang ZX. Nickel-Catalyzed Cross-Coupling of Aryl 2-Pyridyl Ethers with Organozinc Reagents: Removal of the Directing Group via Cleavage of the Carbon-Oxygen Bonds. J Org Chem 2021; 86:2235-2243. [PMID: 33442977 DOI: 10.1021/acs.joc.0c02389] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Reaction of aryl 2-pyridyl ethers with arylzinc reagents under catalysis of NiCl2(PCy3)2 affords aryl-aryl cross-coupling products via selective cleavage of CAr-OPy bonds. The reaction features a wide substrate range and good compatibility of functional groups. β-H-free alkylzinc reagents are also applicable as the nucleophiles in the transformation, whereas β-H-containing alkylzinc reagents lead to a mixture of cross-coupling and hydrogenation products.
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Affiliation(s)
- Wei-Can Dai
- CAS Key Laboratory of Soft Matter Chemistry and Department of Chemistry, University of Science and Technology of China, Hefei, Anhui 230026, P. R. China
| | - Bo Yang
- CAS Key Laboratory of Soft Matter Chemistry and Department of Chemistry, University of Science and Technology of China, Hefei, Anhui 230026, P. R. China
| | - Shi-He Xu
- CAS Key Laboratory of Soft Matter Chemistry and Department of Chemistry, University of Science and Technology of China, Hefei, Anhui 230026, P. R. China
| | - Zhong-Xia Wang
- CAS Key Laboratory of Soft Matter Chemistry and Department of Chemistry, University of Science and Technology of China, Hefei, Anhui 230026, P. R. China.,Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin 300072, P. R. China
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Alirezapour F, Khanmohammadi A. The effect of cation-π interactions on the stability and electronic properties of anticancer drug Altretamine: a theoretical study. Acta Crystallogr C Struct Chem 2020; 76:982-991. [PMID: 33016269 DOI: 10.1107/s2053229620012589] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2020] [Accepted: 09/15/2020] [Indexed: 11/10/2022] Open
Abstract
The present work utilizes density functional theory (DFT) calculations to study the influence of cation-π interactions on the electronic properties of the complexes formed by Altretamine [2,4,6-tris(dimethylamino)-1,3,5-triazine], an anticancer drug, with mono- and divalent (Li+, Na+, K+, Be2+, Mg2+ and Ca2+) metal cations. The structures were optimized with the M06-2X method and the 6-311++G(d,p) basis set in the gas phase and in solution. The theory of `Atoms in Molecules' (AIM) was applied to study the nature of the interactions by calculating the electron density ρ(r) and its Laplacian at the bond critical points. The charge-transfer process during complexation was evaluated using natural bond orbital (NBO) analysis. The results of DFT calculations demonstrate that the strongest/weakest interactions belong to Be2+/K+ complexes. There are good correlations between the achieved densities and the amounts of charge transfer with the interaction energies. Finally, the stability and reactivity of the cation-π interactions can be determined by quantum chemical computation based on the molecular orbital (MO) theory.
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Affiliation(s)
- Fahimeh Alirezapour
- Department of Chemistry, Payame Noor University, PO Box 19395-3697 Tehran, Iran
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Iwasaki T, Akaiwa T, Hirooka Y, Pal S, Nozaki K, Kambe N. Synthesis of and Structural Insights into Contact Ion Pair and Solvent-Separated Ion Pair Diphenyliridate Complexes. Organometallics 2020. [DOI: 10.1021/acs.organomet.0c00446] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Affiliation(s)
- Takanori Iwasaki
- Department of Chemistry and Biotechnology, Graduate School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan
| | - Toshikazu Akaiwa
- Department of Applied Chemistry, Graduate School of Engineering, Osaka University, Suita, Osaka, 560-0871, Japan
| | - Yuko Hirooka
- Department of Chemistry and Biotechnology, Graduate School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan
| | - Shrinwantu Pal
- Department of Chemistry and Biotechnology, Graduate School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan
| | - Kyoko Nozaki
- Department of Chemistry and Biotechnology, Graduate School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan
| | - Nobuaki Kambe
- Department of Applied Chemistry, Graduate School of Engineering, Osaka University, Suita, Osaka, 560-0871, Japan
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10
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Park S, Kim S, Jho Y, Hwang DS. Cation-π Interactions and Their Contribution to Mussel Underwater Adhesion Studied Using a Surface Forces Apparatus: A Mini-Review. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2019; 35:16002-16012. [PMID: 31423790 DOI: 10.1021/acs.langmuir.9b01976] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Mussel underwater adhesion is a model phenomenon important for the understanding of broader biological adhesion and the development of biomimetic wet adhesives. The catechol moiety of 3,4-dihydroxyphenyl-l-alanine (DOPA) is known to be actively involved in the mechanism of mussel underwater adhesion; however, other underwater adhesion mechanisms are also crucial. The surface forces apparatus (SFA) has often been used to explore the contributions of other mechanisms to mussel underwater adhesion; e.g., recent SFA-based nanomechanical studies have revealed that cation-π interactions, one of the strongest intermolecular interactions in water, are the pivotal interactions of adhesive proteins involved in underwater mussel adhesion. This mini-review surveys recent research on cation-π interactions and their contributions to strong mussel underwater adhesion, shedding light on some biological processes and facilitating the development of biomedical adhesives.
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Affiliation(s)
- Sohee Park
- Division of Environmental Science and Engineering , Pohang University of Science and Technology (POSTECH) , 77 Chengam-ro, Nam-gu , Pohang 37673 , Republic of Korea
| | - Sangsik Kim
- Division of Environmental Science and Engineering , Pohang University of Science and Technology (POSTECH) , 77 Chengam-ro, Nam-gu , Pohang 37673 , Republic of Korea
- Division of Integrative Biosciences and Biotechnology , Pohang University of Science and Technology (POSTECH) , 77 Chengam-ro, Nam-gu , Pohang 37673 , Republic of Korea
| | - YongSeok Jho
- Department of Physics and Research Institute of Natural Science , Gyeongsang National University , Jinju 52828 , Republic of Korea
| | - Dong Soo Hwang
- Division of Environmental Science and Engineering , Pohang University of Science and Technology (POSTECH) , 77 Chengam-ro, Nam-gu , Pohang 37673 , Republic of Korea
- Division of Integrative Biosciences and Biotechnology , Pohang University of Science and Technology (POSTECH) , 77 Chengam-ro, Nam-gu , Pohang 37673 , Republic of Korea
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11
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Hashimoto K, Kobayashi Y, Kokubo H, Ueki T, Ohara K, Fujii K, Watanabe M. Solvation Structure of Poly(benzyl methacrylate) in a Solvate Ionic Liquid: Preferential Solvation of Li-Glyme Complex Cation. J Phys Chem B 2019; 123:4098-4107. [PMID: 31009222 DOI: 10.1021/acs.jpcb.9b02458] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We report the solvation structure of a lower critical solution temperature (LCST)-type thermoresponsive polymer in a solvate ionic liquid (SIL, i.e., an ionic liquid comprising solvate ions) to elucidate the predominant interaction for the dissolution of the thermoresponsive polymer in SIL at low temperatures. The solvation structure of poly(benzyl methacrylate) (PBnMA) and a model compound of its monomer in a typical glyme-based SIL, [Li(G4)][TFSA] (G4: tetraglyme; TFSA: bis(trifluoromethanesulfonyl)amide), have been investigated using high-energy X-ray total scattering and all-atom molecular dynamics simulations. In the model compound/SIL system, the intermolecular components extracted from the total G( r)s revealed that the ester moiety of BnMA is preferentially solvated by Li cations through a cation-dipole interaction, which induces slight desolvation of the G4 molecules, and the aromatic ring of BnMA is secondarily solvated by the [Li(G4)] cation complex through a cation-π interaction with maintaining the complex structure. In contrast, TFSA anions are attracted only by the [Li(G4)] cation. These interactions result in the formation of a solvation layer of SILs around the aromatic ring, which plays a key role in the negative entropy and enthalpy of mixing. Meanwhile, in the polymer solution, the coordination number of the Li cation around the ester moiety significantly decreased. This could be ascribed to the steric effect of the bulky side chains, preventing the approach of the [Li(G4)] cation complex to the ester moiety located near the main chain. These solvation structures lead to small absolute values of negative entropy and enthalpy of mixing, which together are key factors to understand the LCST-type phase behavior in the IL system.
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Affiliation(s)
- Kei Hashimoto
- Department of Chemistry and Biotechnology , Yokohama National University , 79-5 Tokiwadai , Hodogaya-ku, Yokohama 240-8501 , Japan
| | - Yumi Kobayashi
- Department of Chemistry and Biotechnology , Yokohama National University , 79-5 Tokiwadai , Hodogaya-ku, Yokohama 240-8501 , Japan
| | - Hisashi Kokubo
- Department of Chemistry and Biotechnology , Yokohama National University , 79-5 Tokiwadai , Hodogaya-ku, Yokohama 240-8501 , Japan
| | - Takeshi Ueki
- WPI Research Center International Center for Materials Nanoarchitectonics (WPI-MANA) , National Institute for Materials Science (NIMS) , 1-1 Namiki , Tsukuba , Ibaraki 305-0044 , Japan
| | - Koji Ohara
- Japan Synchrotron Radiation Research Institute (JASRI) , 1-1-1 Koto, Sayocho , Sayogun , Hyogo 679-5198 , Japan
| | - Kenta Fujii
- Graduate School of Sciences and Technology for Innovation , Yamaguchi University , 2-16-1 Tokiwadai , Ube , Yamaguchi 755-8611 , Japan
| | - Masayoshi Watanabe
- Department of Chemistry and Biotechnology , Yokohama National University , 79-5 Tokiwadai , Hodogaya-ku, Yokohama 240-8501 , Japan
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12
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Probing effect of weak H-bonding on conformational change in ionic liquid: Experimental and DFT studies. J Mol Liq 2018. [DOI: 10.1016/j.molliq.2018.07.007] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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13
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Bonding modes in bis(benzene)beryllium(0): A density functional and Møller-Plesset computational investigation. Inorganica Chim Acta 2018. [DOI: 10.1016/j.ica.2017.03.029] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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14
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Kobayashi Y, Kitazawa Y, Hashimoto K, Ueki T, Kokubo H, Watanabe M. Thermosensitive Phase Separation Behavior of Poly(benzyl methacrylate)/Solvate Ionic Liquid Solutions. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2017; 33:14105-14114. [PMID: 29156139 DOI: 10.1021/acs.langmuir.7b03378] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
We report a lower critical solution temperature (LCST) behavior of binary systems consisting of poly(benzyl methacrylate) (PBnMA) and solvate ionic liquids: equimolar mixtures of triglyme (G3) or tetraglyme (G4) and lithium bis(trifluoromethanesulfonyl)amide. We evaluated the critical temperatures (Tcs) using transmittance measurements. The stability of the glyme-Li+ complex ([Li(G3 or G4)]+) in the presence of PBnMA was confirmed using Raman spectroscopy, pulsed-field gradient spin-echo NMR (PGSE-NMR), and thermogravimetric analysis to demonstrate that the complex was not disrupted. The interaction between glyme-Li+ complex and PBnMA was investigated via 7Li NMR chemical shifts. Upfield shifts originating from the ring-current effect of the aromatic ring within PBnMA were observed with the addition of PBnMA, indicating localization of the glyme-Li+ complex above and below the benzyl group of PBnMA, which may be a reason for negative mixing entropy, a key requirement of the LCST.
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Affiliation(s)
- Yumi Kobayashi
- Department of Chemistry & Biotechnology, Yokohama National University 79-5 Tokiwadai, Hodogaya-ku, Yokohama 240-8501, Japan
| | - Yuzo Kitazawa
- Department of Chemistry & Biotechnology, Yokohama National University 79-5 Tokiwadai, Hodogaya-ku, Yokohama 240-8501, Japan
| | - Kei Hashimoto
- Department of Chemistry & Biotechnology, Yokohama National University 79-5 Tokiwadai, Hodogaya-ku, Yokohama 240-8501, Japan
| | - Takeshi Ueki
- National Institute for Materials Science , 1-1 Namiki, Tsukuba, Ibaraki 305-0044, Japan
| | - Hisashi Kokubo
- Department of Chemistry & Biotechnology, Yokohama National University 79-5 Tokiwadai, Hodogaya-ku, Yokohama 240-8501, Japan
| | - Masayoshi Watanabe
- Department of Chemistry & Biotechnology, Yokohama National University 79-5 Tokiwadai, Hodogaya-ku, Yokohama 240-8501, Japan
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15
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Competitive/co-operative interactions in acid base sandwich: role of cation vs. substituents. J Mol Model 2017; 23:341. [PMID: 29143129 DOI: 10.1007/s00894-017-3518-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2017] [Accepted: 11/03/2017] [Indexed: 10/18/2022]
Abstract
The cation-π interaction can be envisaged as a lewis acid base interaction, and it is in line with Pearson's acid base concept. The critical examination of interactions between the π-acids (alkali metal cations - Li+, Na+ and alkaline earth metal cations Mg2+, Ca2+) on one face and tripodal Cr(CO)3 moiety on the other π face of substituted arenes demonstrates the role of cation and substitutents in manipulating the interactions between them. The interaction of the two π acids on both faces of arene is not expectedly additive, rather it shows either depreciation of interaction energy revealing the competition of acids toward the base or enhancement of interaction energy denoting a cooperative effect. Among the metal cations under study, Mg2+ shows a cooperative gesture. Although the substituents play a meek role, they unfailingly exert their electronic effects and are amply documented by excellent correlation of various parameters with the Hammett constant σm. The elusive switching of λmax from the UV to IR region on binding Mg2+ with substituted arene-Cr(CO)3 complex is a characteristic clue that TDDFT can help design the ionic sensors for Mg2+ cations.
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16
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Yang B, Wang ZX. Transition-Metal-Free Cross-Coupling of Aryl and Heteroaryl Thiols with Arylzinc Reagents. Org Lett 2017; 19:6220-6223. [DOI: 10.1021/acs.orglett.7b03145] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Bo Yang
- CAS
Key Laboratory of Soft Matter Chemistry, Hefei National Laboratory
for Physical Sciences at Microscale and Department of Chemistry, University of Science and Technology of China, Hefei, Anhui 230026, P. R. China
| | - Zhong-Xia Wang
- CAS
Key Laboratory of Soft Matter Chemistry, Hefei National Laboratory
for Physical Sciences at Microscale and Department of Chemistry, University of Science and Technology of China, Hefei, Anhui 230026, P. R. China
- Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin 300072, P. R. China
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17
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Su H, Wu Q, Wang H, Wang H. An assessment of the random-phase approximation functional and characteristics analysis for noncovalent cation-π interactions. Phys Chem Chem Phys 2017; 19:26014-26021. [PMID: 28920597 DOI: 10.1039/c7cp04504b] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The binding energy is of great importance in understanding the formation and stability of noncovalent interactions. However, the determination of the binding energy with high precision and efficiency in medium- and long-range noncovalent interactions is still challenging for quantum chemistry. Here, we assess the performance of random-phase approximation (RPA), a fully non-local fifth-rung of the Jacob ladder functional, in determining the binding energy of cation-π systems (cation = Li+, Na+, Be2+, Mg2+, Al+, and NH4+; π = C6H6), which, to the best of our knowledge, has not been investigated. Using experimental results as the benchmark, we systematically compared the RPA method to the other ab initio methods (DFT/B3LYP, MP2, CCSD(T), and QCISD(T)) both in calculation accuracy and efficiency. From the perspective of accuracy, RPA is the best among these approaches, followed by the CCSD(T) and QCISD(T) methods. DFT/B3LYP and MP2 provide the worst accuracy. In addition, the computational efficiency of RPA is much faster than that of CCSD(T) and QCISD(T). We believe that RPA is a robust method for the precise description of medium- and long-range noncovalent interactions and is capable of providing benchmarking data. The interaction strength and interaction nature of cation-π systems are further analyzed by atoms in molecules (AIM) and the color-mapped reduced density gradient (RDG) isosurface, which are consistent with the characteristics of a typical cation-π interaction.
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Affiliation(s)
- He Su
- School of Physical Science and Technology, Southwest Jiaotong University, Chengdu 610031, P. R. China.
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Pašalić H, Aquino AJA, Tunega D, Haberhauer G, Gerzabek MH, Lischka H. Cation-π interactions in competition with cation microhydration: a theoretical study of alkali metal cation-pyrene complexes. J Mol Model 2017; 23:131. [PMID: 28337678 PMCID: PMC5364259 DOI: 10.1007/s00894-017-3302-3] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2016] [Accepted: 02/27/2017] [Indexed: 11/19/2022]
Abstract
Cation–π interactions were systematically investigated for the adsorption of H+ and alkali metal cations M+ to pyrene by means of Møller–Plesset perturbation theory (MP2) and density functional theory (DFT). The main aims were to determine the preferred adsorption sites and how the microhydration shell influences the adsorption process. The preferred adsorption sites were characterized in terms of structural parameters and energetic stability. Stability analysis of the M+–pyrene complexes revealed that the binding strength and the barrier to transitions between neighboring sites generally decreased with increasing cation size from Li+ to Cs+. Such transitions were practically barrierless (<<1 kcal/mol) for the large Rb+ and Cs+ ions. Further, the influence of the first hydration shell on the adsorption behavior was investigated for Li+ and K+ as representatives of small and large (alkali metal) cations, respectively. While the isolated complexes possessed only one minimum, two minima—corresponding to an inner and an outer complex—were observed for microhydrated complexes. The small Li+ ion formed a stable hydration shell and preferentially interacted with water rather than pyrene. In contrast, K+ favored cation–π over cation–water interactions. It was found that the mechanism for complex formation depends on the balance between cation–π interactions, cation–water complexation, and the hydrogen bonding of water to the π-system.
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Affiliation(s)
- Hasan Pašalić
- Institute for Theoretical Chemistry, University of Vienna, Währinger Strasse 17, 1090, Vienna, Austria
| | - Adelia J A Aquino
- School of Pharmaceutical Sciences and Technology, Tianjin University, 92 Weijin Road, Nankai District, Tianjin, 300072, People's Republic of China.,Institute for Soil Research, University of Natural Resources and Life Sciences Vienna, Peter-Jordan-Strasse 82, 1190, Vienna, Austria
| | - Daniel Tunega
- Institute for Soil Research, University of Natural Resources and Life Sciences Vienna, Peter-Jordan-Strasse 82, 1190, Vienna, Austria.
| | - Georg Haberhauer
- Institute for Soil Research, University of Natural Resources and Life Sciences Vienna, Peter-Jordan-Strasse 82, 1190, Vienna, Austria
| | - Martin H Gerzabek
- Institute for Soil Research, University of Natural Resources and Life Sciences Vienna, Peter-Jordan-Strasse 82, 1190, Vienna, Austria
| | - Hans Lischka
- Institute for Theoretical Chemistry, University of Vienna, Währinger Strasse 17, 1090, Vienna, Austria. .,School of Pharmaceutical Sciences and Technology, Tianjin University, 92 Weijin Road, Nankai District, Tianjin, 300072, People's Republic of China.
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Matczak P. Theoretical insight into the interaction between SnX2 (X = H, F, Cl, Br, I) and benzene. J Mol Model 2016; 22:208. [PMID: 27525639 PMCID: PMC4985535 DOI: 10.1007/s00894-016-3053-6] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2016] [Accepted: 06/28/2016] [Indexed: 11/26/2022]
Abstract
For a series of five model complexes composed of a singlet SnX2 molecule (X = H, F, Cl, Br, I) and a benzene molecule, the first-principles calculations of their energetics and the analysis of their electron density topology have been performed. The CCSD(T)/CBS interaction energy between SnX2 and C6H6 fall into the range between −10.0 and −11.2 kcal/mol, which indicates that the complexes are rather weakly bound. The relevant role of electrostatic and dispersion contributions to the interaction energy between SnX2 and C6H6 is highlighted in the results obtained from the symmetry-adapted perturbation theory (SAPT). The electron density topological analysis has been carried out using the quantum theory of atoms in molecules (QTAIM) and the noncovalent interactions (NCI) visualization index. Both QTAIM and NCI prove the closed-shell, noncovalent and attractive character of the interaction. A very small charge transfer from C6H6 to SnX2 has been detected. The formation of the five complexes is accompanied by the electron density deformations that are spatially restricted mostly to the region around the Sn atom and its adjacent C atom. The results presented in this work shed some light on the nature of the interactions associated with crystalline structural motifs involving low-valent tin complexed with neutral aryl rings.
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Affiliation(s)
- Piotr Matczak
- Department of Theoretical and Structural Chemistry, Faculty of Chemistry, University of Łódź, Pomorska 163/165, 90-236, Lodz, Poland.
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Interplay of thermochemistry and Structural Chemistry, the journal (Volume 25, 2014, Issues 5–6) and the discipline. Struct Chem 2015. [DOI: 10.1007/s11224-015-0663-z] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
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Zaboli M, Raissi H. Structural, QTAIM, thermodynamic properties, bonding, aromaticity and NMR analyses of cation–π interactions of mono and divalent metal cations (Li+, Na+, K+, Be2+, Mg2+, and Ca2+) with substituted pyrazine derivatives. JOURNAL OF THEORETICAL & COMPUTATIONAL CHEMISTRY 2015. [DOI: 10.1142/s0219633615500443] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Theoretical investigation of 42 cation-π complexes formed by the alkali metal ( Li +, Na +, K +), alkaline-earth cations ( Be 2+, Mg 2+, Ca 2+) and π-system of the pyrazine and its derivatives have been performed at density functional theory (DFT) (B3LYP functional) and MP2 methods with 6-311++G** basis set in the gas phase and the polarized continuum model (PCM)-water solvation. The following substituents have been taken into consideration: Br , Cl , CH 3, OH , OCH 3 and SH . The interactions present in these complexes have been investigated by means of the natural bond orbital (NBO) and the Bader's quantum theory of atoms in molecules (QTAIMs) approaches. The effects of the interactions on NMR data have been probed using the GIAO-based method to extend investigation of the studied compounds. The calculated highest occupied molecular orbital (HOMO) and lowest unoccupied molecular orbital (LUMO) energies show that charge transfer occurs within each complex. Vibrational frequencies and physical properties such as dipole moment, chemical potential, chemical hardness and chemical electrophilicity of these compounds have been systematically explored. The aromaticity of aromatic rings has been measured using several well-established indices of aromaticity such as nucleus-independent chemical shift, harmonic oscillator models of the aromaticity, para-delocalization index, average two-center indices, aromatic fluctuation index and π-fluctuation aromatic index.
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Affiliation(s)
- Maryam Zaboli
- Department of Chemistry, University of Birjand, Birjand, Iran
| | - Heidar Raissi
- Department of Chemistry, University of Birjand, Birjand, Iran
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KAUR DAMANJIT, KAUR RAJINDER. Theoretical Characterization of Hydrogen Bonding Interactions between RCHO (R = H, CN, CF3, OCH3, NH2) and HOR′(R′ = H, Cl, CH3, NH2, C(O)H, C6H5). J CHEM SCI 2015. [DOI: 10.1007/s12039-015-0885-z] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Sadlej-Sosnowska N. Ab initio study of charge transfer between lithium and para-disubstituted benzenes. Struct Chem 2015. [DOI: 10.1007/s11224-015-0632-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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