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Gu Y, Feng G, Hou P, Zhou Y, Zhang H, Wang X, Luo B, Chen L. Nondestructive detection of saline-alkali stress in wheat (Triticum aestivum L.) seedlings via fusion technology. PLANT METHODS 2024; 20:136. [PMID: 39238046 PMCID: PMC11375829 DOI: 10.1186/s13007-024-01248-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/06/2024] [Accepted: 07/27/2024] [Indexed: 09/07/2024]
Abstract
BACKGROUND Wheat (Triticum aestivum L.) is an important grain crops in the world, and its growth and development in different stages is seriously affected by saline-alkali stress, especially in seedling stage. Therefore, nondestructive detection of wheat seedlings under saline-alkali stress can provide more comprehensive technical support for wheat breeding, cultivation and management. RESULTS This research focused on moisture signal prediction and classification of saline-alkali stress in wheat seedlings using fusion techniques. After collecting and analyzing transverse relaxation time and Multispectral imaging (MSI) information of wheat seedlings, four regression models were used to predict the moisture signal. K-Nearest Neighbor (KNN) and Gaussian-Naïve Bayes (GNB) models were combined with fivefold cross validation to classify the prediction of wheat seedling stress. The results showed that wheat seedlings would increase the bound water content through a certain mechanism to enhance their saline-alkali stress. Under the same Na concentration, the effect of alkali stress on moisture, growth and spectrum of wheat seedlings is stronger than salt stress. The Gradient Boosting Decision Regression Tree model performs the best in predicting wheat moisture signals, with a coefficient of determination (R2P) of 0.98 and a root mean square error of 109.60. It also had a short training time (1.48 s) and an efficient prediction speed (1300 obs/s). The KNN and GNB demonstrated significantly enhanced predictive performance when classifying the fused dataset, compared to using single datasets individually. In particular, the GNB model performing best on the fused dataset, with Precision, Recall, Accuracy, and F1-score of 90.30, 88.89%, 88.90%, and 0.90, respectively. CONCLUSIONS Under the same Na concentration, the effects of alkali stress on water content, spectrum, and growth of wheat were stronger than that of salt stress, which was more unfavorable to the growth of wheat. The fusion of low-field nuclear magnetic resonance and MSI technology can improve the classification of wheat stress, and provide an effective technical method for rapid and accurate monitoring of wheat seedlings under saline-alkali stress.
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Affiliation(s)
- Ying Gu
- College of Information and Electrical Engineering, Shenyang Agricultural University, Shenyang, 110866, China
- Intelligent Equipment Research Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100089, China
| | - Guoqing Feng
- Intelligent Equipment Research Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100089, China
| | - Peichen Hou
- Intelligent Equipment Research Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100089, China
| | - Yanan Zhou
- Intelligent Equipment Research Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100089, China
| | - He Zhang
- Intelligent Equipment Research Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100089, China
- College of Agriculture, Northeast Agricultural University, Harbin, 150006, China
| | - Xiaodong Wang
- Intelligent Equipment Research Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100089, China
| | - Bin Luo
- Intelligent Equipment Research Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100089, China.
| | - Liping Chen
- College of Information and Electrical Engineering, Shenyang Agricultural University, Shenyang, 110866, China.
- Intelligent Equipment Research Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100089, China.
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Khoso MA, Wang M, Zhou Z, Huang Y, Li S, Zhang Y, Qian G, Ko SN, Pang Q, Liu C, Li L. Bacillus altitudinis AD13-4 Enhances Saline-Alkali Stress Tolerance of Alfalfa and Affects Composition of Rhizosphere Soil Microbial Community. Int J Mol Sci 2024; 25:5785. [PMID: 38891975 PMCID: PMC11171787 DOI: 10.3390/ijms25115785] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2024] [Revised: 05/10/2024] [Accepted: 05/15/2024] [Indexed: 06/21/2024] Open
Abstract
Saline and alkaline stresses limit plant growth and reduce crop yield. Soil salinization and alkalization seriously threaten the sustainable development of agriculture and the virtuous cycle of ecology. Biofertilizers made from plant growth-promoting rhizobacteria (PGPR) not only enhance plant growth and stress tolerance, but also are environmentally friendly and cost-effective. There have been many studies on the mechanisms underlying PGPRs enhancing plant salt resistance. However, there is limited knowledge about the interaction between PGPR and plants under alkaline-sodic stress. To clarify the mechanisms underlying PGPR's improvement of plants' tolerance to alkaline-sodic stress, we screened PGPR from the rhizosphere microorganisms of local plants growing in alkaline-sodic land and selected an efficient strain, Bacillus altitudinis AD13-4, as the research object. Our results indicate that the strain AD13-4 can produce various growth-promoting substances to regulate plant endogenous hormone levels, cell division and differentiation, photosynthesis, antioxidant capacity, etc. Transcriptome analysis revealed that the strain AD13-4 significantly affected metabolism and secondary metabolism, signal transduction, photosynthesis, redox processes, and plant-pathogen interactions. Under alkaline-sodic conditions, inoculation of the strain AD13-4 significantly improved plant biomass and the contents of metabolites (e.g., soluble proteins and sugars) as well as secondary metabolites (e.g., phenols, flavonoids, and terpenoids). The 16S rRNA gene sequencing results indicated that the strain AD13-4 significantly affected the abundance and composition of the rhizospheric microbiota and improved soil activities and physiochemical properties. Our study provides theoretical support for the optimization of saline-alkali-tolerant PGPR and valuable information for elucidating the mechanism of plant alkaline-sodic tolerance.
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Affiliation(s)
- Muneer Ahmed Khoso
- Key Laboratory of Saline-Alkali Vegetation Ecology Restoration, Ministry of Education, College of Life Sciences, Northeast Forestry University, Harbin 150040, China; (M.A.K.); (M.W.); (Z.Z.); (Y.H.); (S.L.); (Y.Z.); (G.Q.); (S.N.K.); (Q.P.)
| | - Mingyu Wang
- Key Laboratory of Saline-Alkali Vegetation Ecology Restoration, Ministry of Education, College of Life Sciences, Northeast Forestry University, Harbin 150040, China; (M.A.K.); (M.W.); (Z.Z.); (Y.H.); (S.L.); (Y.Z.); (G.Q.); (S.N.K.); (Q.P.)
| | - Zhenzhen Zhou
- Key Laboratory of Saline-Alkali Vegetation Ecology Restoration, Ministry of Education, College of Life Sciences, Northeast Forestry University, Harbin 150040, China; (M.A.K.); (M.W.); (Z.Z.); (Y.H.); (S.L.); (Y.Z.); (G.Q.); (S.N.K.); (Q.P.)
| | - Yongxue Huang
- Key Laboratory of Saline-Alkali Vegetation Ecology Restoration, Ministry of Education, College of Life Sciences, Northeast Forestry University, Harbin 150040, China; (M.A.K.); (M.W.); (Z.Z.); (Y.H.); (S.L.); (Y.Z.); (G.Q.); (S.N.K.); (Q.P.)
| | - Shenglin Li
- Key Laboratory of Saline-Alkali Vegetation Ecology Restoration, Ministry of Education, College of Life Sciences, Northeast Forestry University, Harbin 150040, China; (M.A.K.); (M.W.); (Z.Z.); (Y.H.); (S.L.); (Y.Z.); (G.Q.); (S.N.K.); (Q.P.)
- College of Life Sciences and Agriculture and Forestry, Qiqihar University, Qiqihar 161006, China
| | - Yiming Zhang
- Key Laboratory of Saline-Alkali Vegetation Ecology Restoration, Ministry of Education, College of Life Sciences, Northeast Forestry University, Harbin 150040, China; (M.A.K.); (M.W.); (Z.Z.); (Y.H.); (S.L.); (Y.Z.); (G.Q.); (S.N.K.); (Q.P.)
| | - Guangtao Qian
- Key Laboratory of Saline-Alkali Vegetation Ecology Restoration, Ministry of Education, College of Life Sciences, Northeast Forestry University, Harbin 150040, China; (M.A.K.); (M.W.); (Z.Z.); (Y.H.); (S.L.); (Y.Z.); (G.Q.); (S.N.K.); (Q.P.)
| | - Song Nam Ko
- Key Laboratory of Saline-Alkali Vegetation Ecology Restoration, Ministry of Education, College of Life Sciences, Northeast Forestry University, Harbin 150040, China; (M.A.K.); (M.W.); (Z.Z.); (Y.H.); (S.L.); (Y.Z.); (G.Q.); (S.N.K.); (Q.P.)
| | - Qiuying Pang
- Key Laboratory of Saline-Alkali Vegetation Ecology Restoration, Ministry of Education, College of Life Sciences, Northeast Forestry University, Harbin 150040, China; (M.A.K.); (M.W.); (Z.Z.); (Y.H.); (S.L.); (Y.Z.); (G.Q.); (S.N.K.); (Q.P.)
| | - Changli Liu
- Key Laboratory of Saline-Alkali Vegetation Ecology Restoration, Ministry of Education, College of Life Sciences, Northeast Forestry University, Harbin 150040, China; (M.A.K.); (M.W.); (Z.Z.); (Y.H.); (S.L.); (Y.Z.); (G.Q.); (S.N.K.); (Q.P.)
| | - Lixin Li
- Key Laboratory of Saline-Alkali Vegetation Ecology Restoration, Ministry of Education, College of Life Sciences, Northeast Forestry University, Harbin 150040, China; (M.A.K.); (M.W.); (Z.Z.); (Y.H.); (S.L.); (Y.Z.); (G.Q.); (S.N.K.); (Q.P.)
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Integrated Transcriptome and Metabolome Analysis of Rice Leaves Response to High Saline-Alkali Stress. Int J Mol Sci 2023; 24:ijms24044062. [PMID: 36835473 PMCID: PMC9960601 DOI: 10.3390/ijms24044062] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2023] [Revised: 02/11/2023] [Accepted: 02/15/2023] [Indexed: 02/22/2023] Open
Abstract
Rice (Oryza sativa) is one of the most important crops grown worldwide, and saline-alkali stress seriously affects the yield and quality of rice. It is imperative to elucidate the molecular mechanisms underlying rice response to saline-alkali stress. In this study, we conducted an integrated analysis of the transcriptome and metabolome to elucidate the effects of long-term saline-alkali stress on rice. High saline-alkali stress (pH > 9.5) induced significant changes in gene expression and metabolites, including 9347 differentially expressed genes (DEGs) and 693 differentially accumulated metabolites (DAMs). Among the DAMs, lipids and amino acids accumulation were greatly enhanced. The pathways of the ABC transporter, amino acid biosynthesis and metabolism, glyoxylate and dicarboxylate metabolism, glutathione metabolism, TCA cycle, and linoleic acid metabolism, etc., were significantly enriched with DEGs and DAMs. These results suggest that the metabolites and pathways play important roles in rice's response to high saline-alkali stress. Our study deepens the understanding of mechanisms response to saline-alkali stress and provides references for molecular design breeding of saline-alkali resistant rice.
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Ren X, Fan J, Li X, Shan Y, Wang L, Ma L, Li Y, Li X. Application of RNA sequencing to understand the response of rice seedlings to salt-alkali stress. BMC Genomics 2023; 24:21. [PMID: 36641451 PMCID: PMC9840837 DOI: 10.1186/s12864-023-09121-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2022] [Accepted: 01/06/2023] [Indexed: 01/15/2023] Open
Abstract
BACKGROUND Salt-alkali stress represents one of the most stressful events with deleterious consequences for plant growth and crop productivity. Despite studies focusing on the effects of salt-alkali stress on morphology and physiology, its molecular mechanisms remain unclear. Here, we employed RNA-sequencing (RNA-seq) to understand how Na2CO3 stress inhibits rice seedling growth. RESULTS Na2CO3 stress significantly inhibited the growth of rice seedlings. Through RNA-seq, many differentially expressed genes (DEGs) were shown to be potentially involved in the rice seedling response to salt-alkali stress. After 1-day and 5-day treatments, RNA-seq identified 1780 and 2315 DEGs in the Na2CO3-treated versus -untreated rice seedling shoots, respectively. According to the gene ontology enrichment and the Kyoto Encylopedia of Genes and Genomes annotation of DEGs, the growth-inhibition processes associated with salt-alkali stress involve a myriad of molecular events, including biosynthesis and metabolism, enzyme activity, and binding, etc. CONCLUSION: Collectively, the transcriptome analyses in the present work revealed several potential key regulators of plant response to salt-alkali stress, and might pave a way to improve salt-alkali stress tolerance in rice.
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Affiliation(s)
- Xiaoning Ren
- grid.263484.f0000 0004 1759 8467College of Life Science, Shenyang Normal University, 110034 Shenyang, China
| | - Jiahui Fan
- grid.263484.f0000 0004 1759 8467College of Life Science, Shenyang Normal University, 110034 Shenyang, China
| | - Xin Li
- grid.263484.f0000 0004 1759 8467College of Life Science, Shenyang Normal University, 110034 Shenyang, China
| | - Yu Shan
- grid.263484.f0000 0004 1759 8467College of Life Science, Shenyang Normal University, 110034 Shenyang, China
| | - Lanlan Wang
- grid.263484.f0000 0004 1759 8467College of Life Science, Shenyang Normal University, 110034 Shenyang, China
| | - Lianju Ma
- grid.263484.f0000 0004 1759 8467College of Life Science, Shenyang Normal University, 110034 Shenyang, China
| | - Yueying Li
- grid.263484.f0000 0004 1759 8467College of Life Science, Shenyang Normal University, 110034 Shenyang, China
| | - Xuemei Li
- grid.263484.f0000 0004 1759 8467College of Life Science, Shenyang Normal University, 110034 Shenyang, China
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Proteomic Approaches to Uncover Salt Stress Response Mechanisms in Crops. Int J Mol Sci 2022; 24:ijms24010518. [PMID: 36613963 PMCID: PMC9820213 DOI: 10.3390/ijms24010518] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2022] [Revised: 12/09/2022] [Accepted: 12/19/2022] [Indexed: 12/31/2022] Open
Abstract
Salt stress is an unfavorable outcome of global climate change, adversely affecting crop growth and yield. It is the second-biggest abiotic factor damaging the morphological, physio-biochemical, and molecular processes during seed germination and plant development. Salt responses include modulation of hormonal biosynthesis, ionic homeostasis, the antioxidant defense system, and osmoprotectants to mitigate salt stress. Plants trigger salt-responsive genes, proteins, and metabolites to cope with the damaging effects of a high salt concentration. Enhancing salt tolerance among crop plants is direly needed for sustainable global agriculture. Novel protein markers, which are used for crop improvement against salt stress, are identified using proteomic techniques. As compared to single-technique approaches, the integration of genomic tools and exogenously applied chemicals offers great potential in addressing salt-stress-induced challenges. The interplay of salt-responsive proteins and genes is the missing key of salt tolerance. The development of salt-tolerant crop varieties can be achieved by integrated approaches encompassing proteomics, metabolomics, genomics, and genome-editing tools. In this review, the current information about the morphological, physiological, and molecular mechanisms of salt response/tolerance in crops is summarized. The significance of proteomic approaches to improve salt tolerance in various crops is highlighted, and an integrated omics approach to achieve global food security is discussed. Novel proteins that respond to salt stress are potential candidates for future breeding of salt tolerance.
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Comparative Analysis of Physiological, Hormonal and Transcriptomic Responses Reveal Mechanisms of Saline-Alkali Tolerance in Autotetraploid Rice ( Oryza sativa L.). Int J Mol Sci 2022; 23:ijms232416146. [PMID: 36555786 PMCID: PMC9783840 DOI: 10.3390/ijms232416146] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Revised: 11/09/2022] [Accepted: 12/16/2022] [Indexed: 12/23/2022] Open
Abstract
Saline-alkali soil has posed challenges to the growth of agricultural crops, while polyploidy often show greater adaptability in diverse and extreme environments including saline-alkali stress, but its defense mechanisms in rice remain elusive. Herein, we explored the mechanisms of enhanced saline-alkali tolerance of autotetraploid rice 93-11T relative to diploid rice 93-11D, based on physiological, hormonal and transcriptomic profilings. Physiologically, the enhanced saline-alkali tolerance in 93-11T was manifested in higher soluble sugar accumulation and stronger superoxide dismutase (SOD) and peroxidase (POD) activities in leaves during 24 h after saline-alkali shock. Furthermore, various hormone levels in leaves of 93-11T altered greatly, such as the negative correlation between salicylic acid (SA) and the other four hormones changed to positive correlation due to polyploidy. Global transcriptome profiling revealed that the upregulated differentially expressed genes (DEGs) in leaves and roots of 93-11T were more abundant than that in 93-11D, and there were more DEGs in roots than in leaves under saline-alkali stress. Genes related to phytohormone signal transduction of auxin (AUX) and SA in roots, lignin biosynthesis in leaves or roots, and wax biosynthesis in leaves were obviously upregulated in 93-11T compared with 93-11D under saline-alkali condition. Collectively, 93-11T subjected to saline-alkali stress possibly possesses higher osmotic regulation ability due to cuticular wax synthesis, stronger negative regulation of reactive oxygen species (ROS) production by increasing the SA levels and maintaining relative lower levels of IAA, and higher antioxidant capacity by increasing activities of SOD and POD, as well as lignin biosynthesis. Our research provides new insights for exploring the mechanisms of saline-alkali tolerance in polyploid rice and discovering new gene targets for rice genetic improvement.
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The Role of Taraxacum mongolicum in a Puccinellia tenuiflora Community under Saline-Alkali Stress. MOLECULES (BASEL, SWITZERLAND) 2022; 27:molecules27248746. [PMID: 36557878 PMCID: PMC9783931 DOI: 10.3390/molecules27248746] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/05/2022] [Revised: 11/17/2022] [Accepted: 11/29/2022] [Indexed: 12/14/2022]
Abstract
Coexisting salt and alkaline stresses seriously threaten plant survival. Most studies have focused on halophytes; however, knowledge on how plants defend against saline-alkali stress is limited. This study investigated the role of Taraxacum mongolicum in a Puccinellia tenuiflora community under environmental saline-alkali stress to analyse the response of elements and metabolites in T. mongolicum, using P. tenuiflora as a control. The results show that the macroelements Ca and Mg are significantly accumulated in the aboveground parts (particularly in the stem) of T. mongolicum. Microelements B and Mo are also accumulated in T. mongolicum. Microelement B can adjust the transformation of sugars, and Mo contributes to the improvement in nitrogen metabolism. Furthermore, the metabolomic results demonstrate that T. mongolicum leads to decreased sugar accumulation and increased amounts of amino acids and organic acids to help plants resist saline-alkali stress. The resource allocation of carbon (sugar) and nitrogen (amino acids) results in the accumulation of only a few phenolic metabolites (i.e., petunidin, chlorogenic acid, and quercetin-3-O-rhamnoside) in T. mongolicum. These phenolic metabolites help to scavenge excess reactive oxygen species. Our study primarily helps in understanding the contribution of T. mongolicum in P. tenuiflora communities on coping with saline-alkali stress.
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H 2S Enhanced the Tolerance of Malus hupehensis to Alkaline Salt Stress through the Expression of Genes Related to Sulfur-Containing Compounds and the Cell Wall in Roots. Int J Mol Sci 2022; 23:ijms232314848. [PMID: 36499175 PMCID: PMC9736910 DOI: 10.3390/ijms232314848] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2022] [Revised: 11/15/2022] [Accepted: 11/21/2022] [Indexed: 12/03/2022] Open
Abstract
Malus is an economically important plant that is widely cultivated worldwide, but it often encounters saline-alkali stress. The composition of saline-alkali land is a variety of salt and alkali mixed with the formation of alkaline salt. Hydrogen sulfide (H2S) has been reported to have positive effects on plant responses to abiotic stresses. Our previous study showed that H2S pretreatment alleviated the damage caused by alkaline salt stress to Malus hupehensis Rehd. var. pingyiensis Jiang (Pingyi Tiancha, PYTC) roots by regulating Na+/K+ homeostasis and oxidative stress. In this study, transcriptome analysis was used to investigate the overall mechanism through which H2S alleviates alkaline salt stress in PYTC roots. Simultaneously, differentially expressed genes (DEGs) were explored. Transcriptional profiling of the Control-H2S, Control-AS, Control-H2S + AS, and AS-H2S + AS comparison groups identified 1618, 18,652, 16,575, and 4314 DEGs, respectively. Further analysis revealed that H2S could alleviate alkaline salt stress by increasing the energy maintenance capacity and cell wall integrity of M. hupehensis roots and by enhancing the capacity for reactive oxygen species (ROS) metabolism because more upregulated genes involved in ROS metabolism and sulfur-containing compounds were identified in M. hupehensis roots after H2S pretreatment. qRT-PCR analysis of H2S-induced and alkaline salt-response genes showed that these genes were consistent with the RNA-seq analysis results, which indicated that H2S alleviation of alkaline salt stress involves the genes of the cell wall and sulfur-containing compounds in PYTC roots.
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Irrigation with Magnetized Water Alleviates the Harmful Effect of Saline-Alkaline Stress on Rice Seedlings. Int J Mol Sci 2022; 23:ijms231710048. [PMID: 36077438 PMCID: PMC9456538 DOI: 10.3390/ijms231710048] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2022] [Revised: 08/29/2022] [Accepted: 08/30/2022] [Indexed: 11/17/2022] Open
Abstract
Saline–alkaline stress suppresses rice growth and threatens crop production. Despite substantial research on rice’s tolerance to saline–alkaline stress, fewer studies have examined the impact of magnetic water treatments on saline–alkaline-stressed rice plants. We explored the physiological and molecular mechanisms involved in saline–alkaline stress tolerance enhancement via irrigation with magnetized water using Nipponbare. The growth of Nipponbare plants was inhibited by saline–alkaline stress, but this inhibition was alleviated by irrigating the plants with magnetized water, as evidenced by greater plant height, biomass, chlorophyll content, photosynthetic rates, and root system in plants irrigated with magnetized water compared to those irrigated with non-magnetized water. Plants that were irrigated with magnetized water were able to acquire more total nitrogen. In addition, we proved that rice seedlings irrigated with magnetized water had a greater root NO3−-nitrogen concentration and root NH4+-nitrogen concentration than plants irrigated with non-magnetized water. These findings suggest that treatment with magnetized water could increase nitrogen uptake. To test this hypothesis, we analyzed the expression levels of genes involved in nitrogen acquisition. The expression levels of OsNRT1;1, OsNRT1;2, OsNRT2;1, OsAMT1;2, OsAMT2;1, OsAMT2;2, OsAMT2;3, OsAMT3;1, OsAMT3;2, and OsAMT3;3 were higher in plants exposed to magnetized water medium compared to those exposed to non-magnetized water media. We further demonstrated that treatment with magnetized water increases available nitrogen, NO3−-nitrogen content, and NH4+-nitrogen content in soil under saline–alkaline stress. Our results revealed that the increased resistance of rice seedlings to saline–alkaline stress may be attributable to a very effective nitrogen acquisition system enhanced by magnetized water.
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Gao D, Ran C, Zhang Y, Wang X, Lu S, Geng Y, Guo L, Shao X. Effect of different concentrations of foliar iron fertilizer on chlorophyll fluorescence characteristics of iron-deficient rice seedlings under saline sodic conditions. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2022; 185:112-122. [PMID: 35671588 DOI: 10.1016/j.plaphy.2022.05.021] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2021] [Revised: 04/27/2022] [Accepted: 05/19/2022] [Indexed: 05/24/2023]
Abstract
The effectiveness of iron is reduced in saline conditions, which can easily lead to iron deficiency and inhibit photosynthesis in rice. In this study, 4-week-old Fe-deficient rice seedlings were treated under saline sodic stress (50 mM) to different concentrations (0, 0.2%, 0.4%, 0.8%, 1.6%, and 3.2%) of foliar iron fertilizer (FeEDDHA). Differences in prompting fluorescence and the MR820 signal of rice leaves after 7 days of treatment were probed using the JIP-test. The results show that the performances of the two rice varieties were in general agreement. Under iron deficiency and soda salinity stress conditions, rice growth was inhibited, and the pigment content, specific energy flux, quantum yield, performance of the active PSII reaction center (PIABS) and the oxidation (Vox) and reduction rates (Vred) of PSI were reduced. These indicators first increase and then decrease with increasing iron fertiliser concentrations. The best results were obtained with the Fe3 treatment (0.8%). Fluorescence parameters such as the relative variable fluorescence (WK and VJ) and the quantum yield of energy dissipation (φDo) showed opposite trends. This suggests that iron deficiency/excess and soda saline stress disrupt the electron and energy transport in the photosystem. Appropriate iron fertilization concentration can repair the photosynthetic electron transport chain, improve electron transport efficiency and promote balanced energy distribution. Therefore, we suggest that moderate amounts of Fe are beneficial for improving the electron and energy transport properties of the photosystem, while spraying high concentrations of Fe fertilizer has a negative effect on improving salt tolerance in rice.
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Affiliation(s)
- Dapeng Gao
- Agronomy College, Jilin Agricultural University, Changchun, 130118, China
| | - Cheng Ran
- Agronomy College, Jilin Agricultural University, Changchun, 130118, China
| | - Yunhe Zhang
- Agronomy College, Jilin Agricultural University, Changchun, 130118, China
| | - Xiaolei Wang
- Agronomy College, Jilin Agricultural University, Changchun, 130118, China
| | - Sifei Lu
- Agronomy College, Jilin Agricultural University, Changchun, 130118, China
| | - Yanqiu Geng
- Agronomy College, Jilin Agricultural University, Changchun, 130118, China
| | - Liying Guo
- Agronomy College, Jilin Agricultural University, Changchun, 130118, China; Key Laboratory of the Ministry of Education for Germplasm Innovation and Physiology and Ecology of Food Crops in Cold Regions, Harbin, 150038, China.
| | - Xiwen Shao
- Agronomy College, Jilin Agricultural University, Changchun, 130118, China.
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11
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Wang N, Lin Y, Qi F, Xiaoyang C, Peng Z, Yu Y, Liu Y, Zhang J, Qi X, Deyholos M, Zhang J. Comprehensive Analysis of Differentially Expressed Genes and Epigenetic Modification-Related Expression Variation Induced by Saline Stress at Seedling Stage in Fiber and Oil Flax, Linum usitatissimum L. PLANTS (BASEL, SWITZERLAND) 2022; 11:2053. [PMID: 35956530 PMCID: PMC9370232 DOI: 10.3390/plants11152053] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/03/2022] [Revised: 07/23/2022] [Accepted: 08/03/2022] [Indexed: 06/15/2023]
Abstract
The ability of different germplasm to adapt to a saline-alkali environment is critical to learning about the tolerance mechanism of saline-alkali stress in plants. Flax is an important oil and fiber crop in many countries. However, its molecular tolerance mechanism under saline stress is still not clear. In this study, we studied morphological, physiological characteristics, and gene expression variation in the root and leaf in oil and fiber flax types under saline stress, respectively. Abundant differentially expressed genes (DEGs) induced by saline stress, tissue/organ specificity, and different genotypes involved in plant hormones synthesis and metabolism and transcription factors and epigenetic modifications were detected. The present report provides useful information about the mechanism of flax response to saline stress and could lead to the future elucidation of the specific functions of these genes and help to breed suitable flax varieties for saline/alkaline soil conditions.
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Affiliation(s)
- Ningning Wang
- Faculty of Agronomy, Jilin Agricultural University, Changchun 131018, China
| | - Yujie Lin
- Faculty of Agronomy, Jilin Agricultural University, Changchun 131018, China
| | - Fan Qi
- Faculty of Agronomy, Jilin Agricultural University, Changchun 131018, China
| | - Chunxiao Xiaoyang
- Faculty of Agronomy, Jilin Agricultural University, Changchun 131018, China
| | - Zhanwu Peng
- Information Center, Jilin Agricultural University, Changchun 130000, China
| | - Ying Yu
- School of Basic Medicine, Guizhou University of Traditional Chinese Medicine, Guiyang 550025, China
| | - Yingnan Liu
- Institute of Natural Resource and Ecology, Heilongjiang Academy of Science, Harbin 150040, China
| | - Jun Zhang
- Faculty of Agronomy, Jilin Agricultural University, Changchun 131018, China
| | - Xin Qi
- Faculty of Agronomy, Jilin Agricultural University, Changchun 131018, China
| | - Michael Deyholos
- Department of Biology, University of British Columbia Okanagan, Kelowna, BC V1V 1V7, Canada
| | - Jian Zhang
- Faculty of Agronomy, Jilin Agricultural University, Changchun 131018, China
- Department of Biology, University of British Columbia Okanagan, Kelowna, BC V1V 1V7, Canada
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Ran X, Huang X, Wang X, Liang H, Wang Y, Li J, Huo Z, Liu B, Ma C. Ion absorption, distribution and salt tolerance threshold of three willow species under salt stress. FRONTIERS IN PLANT SCIENCE 2022; 13:969896. [PMID: 35982705 PMCID: PMC9379094 DOI: 10.3389/fpls.2022.969896] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/15/2022] [Accepted: 07/14/2022] [Indexed: 06/15/2023]
Abstract
To investigate the response mechanism and salt tolerance threshold of three willow seedlings (Salix matsudana, Salix gordejevii, Salix linearistipularis), the absorption, transport and distribution of salt ions (Na+, K+, Ca2+) were studied under hydroponic conditions with different salt concentrations (CK, 171, 342, 513, and 684 mm) and treatment times (1, 3, 5, 8, 11, and 15 days). Salix linearistipularis has the weakest ability to maintain its apparent shape, while Salix matsudana has the strongest ability. The three plants have a certain Na+ interception ability, and the interception abilities of Salix matsudana and Salix gordejevii are higher than that of Salix linearistipularis. The leaf S AK,Na of Salix linearistipularis were higher than those of Salix matsudana and Salix gordejevii. The leaf selection ability was the highest, and the selection ability of the root system was the lowest in Salix linearistipularis. The long-term low salt concentration and the short-term high salt concentration can increase the root and leaf salinity. Salix matsudana grows more stably in a long-term high-salt stress environment, and Salix gordejevii grows stably in a short-term high-salt stress environment. However, Salix linearistipularis is more suitable for planting as an indicative plant because of its sensitivity to salt stress. The root Na+ content of Salix matsudana and Salix gordejevii was 34.21 mg/g, which was the maximum root retention capacity. Once the accumulation of Na+ content in roots exceeds this value, the rejection capacity of roots is broken through, and the selective ion absorption capacity will rapidly become weak, which easily leads to the death of plants.
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Affiliation(s)
- Xin Ran
- Department of Forest Cultivation, College of Forestry, Hebei Agricultural University, Baoding, China
| | - Xiaoxi Huang
- Department of Forest Cultivation, College of Forestry, Hebei Agricultural University, Baoding, China
| | - Xiao Wang
- Department of Forest Cultivation, College of Forestry, Hebei Agricultural University, Baoding, China
| | - Haiyong Liang
- Department of Forest Cultivation, College of Forestry, Hebei Agricultural University, Baoding, China
| | - Yanchao Wang
- College of Bioscience and Engineering, Xingtai University, Xingtai, China
| | - Jiajing Li
- Department of Forest Cultivation, College of Forestry, Hebei Agricultural University, Baoding, China
| | - Zihan Huo
- Department of Forest Cultivation, College of Forestry, Hebei Agricultural University, Baoding, China
| | - Bingxiang Liu
- Department of Forest Cultivation, College of Forestry, Hebei Agricultural University, Baoding, China
- Hebei Urban Forest Health Technology Innovation Center, Baoding, China
| | - Changming Ma
- Department of Forest Cultivation, College of Forestry, Hebei Agricultural University, Baoding, China
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13
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Jiang M, Wang P, Xu L, Ye X, Fan H, Cheng J, Chen J. In silico analysis of glycosyltransferase 2 family genes in duckweed ( Spirodela polyrhiza) and its role in salt stress tolerance. Open Life Sci 2021; 16:583-593. [PMID: 34179502 PMCID: PMC8216227 DOI: 10.1515/biol-2021-0063] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2021] [Revised: 04/27/2021] [Accepted: 05/22/2021] [Indexed: 11/15/2022] Open
Abstract
Plant glycosyltransferase 2 (GT2) family genes are involved in plant abiotic stress tolerance. However, the roles of GT2 genes in the abiotic resistance in freshwater plants are largely unknown. We identified seven GT2 genes in duckweed, remarkably more than those in the genomes of Arabidopsis thaliana, Oryza sativa, Amborella trichopoda, Nymphaea tetragona, Persea americana, Zostera marina, and Ginkgo biloba, suggesting a significant expansion of this family in the duckweed genome. Phylogeny resolved the GT2 family into two major clades. Six duckweed genes formed an independent subclade in Clade I, and the other was clustered in Clade II. Gene structure and protein domain analysis showed that the lengths of the seven duckweed GT2 genes were varied, and the majority of GT2 genes harbored two conserved domains, PF04722.12 and PF00535.25. The expression of all Clade I duckweed GT2 genes was elevated at 0 h after salt treatment, suggesting a common role of these genes in rapid response to salt stress. The gene Sp01g00794 was highly expressed at 12 and 24 h after salt treatment, indicating its association with salt stress resilience. Overall, these results are essential for studies on the molecular mechanisms in stress response and resistance in aquatic plants.
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Affiliation(s)
- Mingliang Jiang
- Key Laboratory of Watershed Geographic Sciences, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing 210008, China
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Peng Wang
- Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences & Ministry of Agriculture Key Laboratory of Crop Gene Resources and Germplasm Enhancement in Southern China, No. 4 Xueyuan Road, Haikou 571100, Hainan, China
| | - Ligang Xu
- Key Laboratory of Watershed Geographic Sciences, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing 210008, China
| | - Xiuxu Ye
- Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences & Ministry of Agriculture Key Laboratory of Crop Gene Resources and Germplasm Enhancement in Southern China, No. 4 Xueyuan Road, Haikou 571100, Hainan, China
| | - Hongxiang Fan
- Key Laboratory of Watershed Geographic Sciences, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing 210008, China
| | - Junxiang Cheng
- Key Laboratory of Watershed Geographic Sciences, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing 210008, China
| | - Jinting Chen
- Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences & Ministry of Agriculture Key Laboratory of Crop Gene Resources and Germplasm Enhancement in Southern China, No. 4 Xueyuan Road, Haikou 571100, Hainan, China
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14
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De novo transcriptome in roots of switchgrass (Panicum virgatum L.) reveals gene expression dynamic and act network under alkaline salt stress. BMC Genomics 2021; 22:82. [PMID: 33509088 PMCID: PMC7841905 DOI: 10.1186/s12864-021-07368-w] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2020] [Accepted: 01/05/2021] [Indexed: 12/30/2022] Open
Abstract
Background Soil salinization is a major limiting factor for crop cultivation. Switchgrass is a perennial rhizomatous bunchgrass that is considered an ideal plant for marginal lands, including sites with saline soil. Here we investigated the physiological responses and transcriptome changes in the roots of Alamo (alkaline-tolerant genotype) and AM-314/MS-155 (alkaline-sensitive genotype) under alkaline salt stress. Results Alkaline salt stress significantly affected the membrane, osmotic adjustment and antioxidant systems in switchgrass roots, and the ASTTI values between Alamo and AM-314/MS-155 were divergent at different time points. A total of 108,319 unigenes were obtained after reassembly, including 73,636 unigenes in AM-314/MS-155 and 65,492 unigenes in Alamo. A total of 10,219 DEGs were identified, and the number of upregulated genes in Alamo was much greater than that in AM-314/MS-155 in both the early and late stages of alkaline salt stress. The DEGs in AM-314/MS-155 were mainly concentrated in the early stage, while Alamo showed greater advantages in the late stage. These DEGs were mainly enriched in plant-pathogen interactions, ubiquitin-mediated proteolysis and glycolysis/gluconeogenesis pathways. We characterized 1480 TF genes into 64 TF families, and the most abundant TF family was the C2H2 family, followed by the bZIP and bHLH families. A total of 1718 PKs were predicted, including CaMK, CDPK, MAPK and RLK. WGCNA revealed that the DEGs in the blue, brown, dark magenta and light steel blue 1 modules were associated with the physiological changes in roots of switchgrass under alkaline salt stress. The consistency between the qRT-PCR and RNA-Seq results confirmed the reliability of the RNA-seq sequencing data. A molecular regulatory network of the switchgrass response to alkaline salt stress was preliminarily constructed on the basis of transcriptional regulation and functional genes. Conclusions Alkaline salt tolerance of switchgrass may be achieved by the regulation of ion homeostasis, transport proteins, detoxification, heat shock proteins, dehydration and sugar metabolism. These findings provide a comprehensive analysis of gene expression dynamic and act network induced by alkaline salt stress in two switchgrass genotypes and contribute to the understanding of the alkaline salt tolerance mechanism of switchgrass and the improvement of switchgrass germplasm. Supplementary Information The online version contains supplementary material available at 10.1186/s12864-021-07368-w.
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Qiao Y, Wang Y, Li X, Nisa Z, Jin X, Jing L, Yu L, Chen C. Transcriptional profiling of alkaline stress-induced defense responses in soybean ( Glycine max). BIOTECHNOL BIOTEC EQ 2021. [DOI: 10.1080/13102818.2021.1976078] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022] Open
Affiliation(s)
- Yanhua Qiao
- Department of Chemistry and Molecular Biology, School of Life Science and Technology, Harbin Normal University, Harbin, P.R. China
| | - Yining Wang
- Department of Chemistry and Molecular Biology, School of Life Science and Technology, Harbin Normal University, Harbin, P.R. China
| | - Xiaoming Li
- Department of Chemistry and Molecular Biology, School of Life Science and Technology, Harbin Normal University, Harbin, P.R. China
| | - Zaib_un Nisa
- General Botany Lab, Institute of Molecular Biology and Biotechnology, University of Lahore, Defence road campus, Lahore, Pakistan
| | - Xiaoxia Jin
- Department of Chemistry and Molecular Biology, School of Life Science and Technology, Harbin Normal University, Harbin, P.R. China
| | - Legang Jing
- Department of Chemistry and Molecular Biology, School of Life Science and Technology, Harbin Normal University, Harbin, P.R. China
| | - Lijie Yu
- Department of Chemistry and Molecular Biology, School of Life Science and Technology, Harbin Normal University, Harbin, P.R. China
| | - Chao Chen
- Department of Chemistry and Molecular Biology, School of Life Science and Technology, Harbin Normal University, Harbin, P.R. China
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Peng CY, Xu XF, Zhu HY, Ren YF, Niu HL, Hou RY, Wan XC, Cai HM. Metabolics and ionomics responses of tea leaves (Camellia sinensis (L.) O. Kuntze) to fluoride stress. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2021; 158:65-75. [PMID: 33296847 DOI: 10.1016/j.plaphy.2020.11.024] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2020] [Accepted: 11/17/2020] [Indexed: 06/12/2023]
Abstract
Tea plant (Camellia sinensis (L.) O. Kuntze) is known to accumulate high concentrations of fluoride (F) in its leaves; however, the underlying mechanism of F accumulation remains unclear. The main objective of this study was to investigate the homeostatic self-defense mechanisms of tea leaves to F supplementation (0, 5, 20, and 50 mgL-1) by metabolomics and ionomics. We identified a total of 96 up-regulated and 40 down-regulated metabolites in tea leaves treated with F. Of these different compounds, minor polypeptides, carbohydrates and amino acids played valuable roles in the F-tolerating mechanism of tea plant. After F treatments, the concentrations of sodium (Na), ferrum (Fe), manganese (Mn), and molybdenum (Mo) were significantly increased in tea leaves, whereas the aluminum (Al) was decreased. These findings suggest that the ionic balance and metabolites are attributable to the development of F tolerance, providing new insight into tea plant adaptation to F stress.
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Affiliation(s)
- Chuan-Yi Peng
- State Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, Hefei, 230036, Anhui, People's Republic of China; Key Laboratory of Food Nutrition and Safety, School of Tea and Food Science & Technology, Anhui Agricultural University, Hefei, 230036, Anhui, People's Republic of China; Anhui Province Key Lab of Analysis and Detection for Food Safety, Hefei, 230036, People's Republic of China.
| | - Xue-Feng Xu
- State Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, Hefei, 230036, Anhui, People's Republic of China; Key Laboratory of Food Nutrition and Safety, School of Tea and Food Science & Technology, Anhui Agricultural University, Hefei, 230036, Anhui, People's Republic of China; Anhui Province Key Lab of Analysis and Detection for Food Safety, Hefei, 230036, People's Republic of China
| | - Hai-Yan Zhu
- State Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, Hefei, 230036, Anhui, People's Republic of China; Key Laboratory of Food Nutrition and Safety, School of Tea and Food Science & Technology, Anhui Agricultural University, Hefei, 230036, Anhui, People's Republic of China; Anhui Province Key Lab of Analysis and Detection for Food Safety, Hefei, 230036, People's Republic of China
| | - Yin-Feng Ren
- State Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, Hefei, 230036, Anhui, People's Republic of China; Key Laboratory of Food Nutrition and Safety, School of Tea and Food Science & Technology, Anhui Agricultural University, Hefei, 230036, Anhui, People's Republic of China; Anhui Province Key Lab of Analysis and Detection for Food Safety, Hefei, 230036, People's Republic of China
| | - Hui-Liang Niu
- State Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, Hefei, 230036, Anhui, People's Republic of China
| | - Ru-Yan Hou
- State Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, Hefei, 230036, Anhui, People's Republic of China; Key Laboratory of Food Nutrition and Safety, School of Tea and Food Science & Technology, Anhui Agricultural University, Hefei, 230036, Anhui, People's Republic of China; Anhui Province Key Lab of Analysis and Detection for Food Safety, Hefei, 230036, People's Republic of China
| | - Xiao-Chun Wan
- State Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, Hefei, 230036, Anhui, People's Republic of China.
| | - Hui-Mei Cai
- State Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, Hefei, 230036, Anhui, People's Republic of China; Key Laboratory of Food Nutrition and Safety, School of Tea and Food Science & Technology, Anhui Agricultural University, Hefei, 230036, Anhui, People's Republic of China; Anhui Province Key Lab of Analysis and Detection for Food Safety, Hefei, 230036, People's Republic of China.
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