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Ekundayo TC, Adewoyin MA, Ijabadeniyi OA, Igbinosa EO, Okoh AI. Machine learning-guided determination of Acinetobacter density in waterbodies receiving municipal and hospital wastewater effluents. Sci Rep 2023; 13:7749. [PMID: 37173379 PMCID: PMC10177717 DOI: 10.1038/s41598-023-34963-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2023] [Accepted: 05/10/2023] [Indexed: 05/15/2023] Open
Abstract
A smart artificial intelligent system (SAIS) for Acinetobacter density (AD) enumeration in waterbodies represents an invaluable strategy for avoidance of repetitive, laborious, and time-consuming routines associated with its determination. This study aimed to predict AD in waterbodies using machine learning (ML). AD and physicochemical variables (PVs) data from three rivers monitored via standard protocols in a year-long study were fitted to 18 ML algorithms. The models' performance was assayed using regression metrics. The average pH, EC, TDS, salinity, temperature, TSS, TBS, DO, BOD, and AD was 7.76 ± 0.02, 218.66 ± 4.76 µS/cm, 110.53 ± 2.36 mg/L, 0.10 ± 0.00 PSU, 17.29 ± 0.21 °C, 80.17 ± 5.09 mg/L, 87.51 ± 5.41 NTU, 8.82 ± 0.04 mg/L, 4.00 ± 0.10 mg/L, and 3.19 ± 0.03 log CFU/100 mL respectively. While the contributions of PVs differed in values, AD predicted value by XGB [3.1792 (1.1040-4.5828)] and Cubist [3.1736 (1.1012-4.5300)] outshined other algorithms. Also, XGB (MSE = 0.0059, RMSE = 0.0770; R2 = 0.9912; MAD = 0.0440) and Cubist (MSE = 0.0117, RMSE = 0.1081, R2 = 0.9827; MAD = 0.0437) ranked first and second respectively, in predicting AD. Temperature was the most important feature in predicting AD and ranked first by 10/18 ML-algorithms accounting for 43.00-83.30% mean dropout RMSE loss after 1000 permutations. The two models' partial dependence and residual diagnostics sensitivity revealed their efficient AD prognosticating accuracies in waterbodies. In conclusion, a fully developed XGB/Cubist/XGB-Cubist ensemble/web SAIS app for AD monitoring in waterbodies could be deployed to shorten turnaround time in deciding microbiological quality of waterbodies for irrigation and other purposes.
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Affiliation(s)
- Temitope C Ekundayo
- SAMRC Microbial Water Quality Monitoring Centre, University of Fort Hare, Alice, Eastern Cape, South Africa.
- Department of Biotechnology and Food Science, Durban University of Technology, Steve Biko Campus, Steve Biko Rd, Musgrave, Berea, 4001, Durban, South Africa.
- Department of Microbiology, University of Medical Sciences Ondo, Ondo, Nigeria.
| | - Mary A Adewoyin
- SAMRC Microbial Water Quality Monitoring Centre, University of Fort Hare, Alice, Eastern Cape, South Africa
- Department of Biological Sciences, Faculty of Natural, Applied and Health Sciences, Anchor University, Ayobo Road, Ipaja, P. M. B. 001, Lagos, Nigeria
| | - Oluwatosin A Ijabadeniyi
- Department of Biotechnology and Food Science, Durban University of Technology, Steve Biko Campus, Steve Biko Rd, Musgrave, Berea, 4001, Durban, South Africa
| | - Etinosa O Igbinosa
- SAMRC Microbial Water Quality Monitoring Centre, University of Fort Hare, Alice, Eastern Cape, South Africa
- Department of Microbiology, Faculty of Life Sciences, University of Benin, Private Mail Bag 1154, Benin City, 300283, Nigeria
| | - Anthony I Okoh
- SAMRC Microbial Water Quality Monitoring Centre, University of Fort Hare, Alice, Eastern Cape, South Africa
- Department of Environmental Health Sciences, College of Health Sciences, University of Sharjah, P.O. Box 27272, Sharjah, United Arab Emirates
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Khalid S, Iqbal A, Javed A, Rashid J, ul Haq I, Barakat MAEF, Kumar R. Analysis of diesel hydrocarbon decomposition using efficient indigenous bacterial isolate: Bacterial growth and biodegradation kinetics. KOREAN J CHEM ENG 2022. [DOI: 10.1007/s11814-022-1229-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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3
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Zhai X, Cao W, Zhang Y, Ju P, Chen J, Duan J, Sun C. Study on the Bacterial Communities of the Biofilms on Titanium, Aluminum, and Copper Alloys at 5,772 m Undersea in Yap Trench. Front Microbiol 2022; 13:831984. [PMID: 35369519 PMCID: PMC8973411 DOI: 10.3389/fmicb.2022.831984] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2021] [Accepted: 01/25/2022] [Indexed: 11/13/2022] Open
Abstract
Biofilms formed on metal surfaces strongly affect metallic instruments serving in marine environments. However, due to sampling difficulty, less has been known about the bacterial communities of the biofilm on metallic surfaces in hadal environments, so the failure process of these deep-sea metallic instruments influenced by microbial communities could be hardly predicted. In this research, seven alloys, including titanium, aluminum, and copper alloys, were exposed in Yap Trench hadal environment for 1 year. Thus, the communities of the biofilms formed on metallic surfaces at 5,772 m undersea in Yap Trench were initially reported in previous studies. Then, 16S rRNA gene sequencing was performed to visualize the in situ bacterial communities of the biofilms formed on titanium, aluminum, and copper alloys at 5,772 m undersea in Yap Trench. It was found that Proteobacteria was the dominant phylum in all samples, but distinct genera were discovered on various alloys. The titanium alloy provided a suitable substrate for a mutualistic symbiotic biofilm with abundant bacterial richness. Aluminum alloys without copper components showed the least bacterial richness and formed a cold-adapted and oligotrophic-adapted biofilm containing the genera Sulfurimonas and PS1 Clade, while copper-present alloys showed relatively high bacterial richness with copper-resistant or even copper-utilizing biofilms constituting the genera Stenotrophomonas, Burkholderia-Caballeronia-Paraburkholderia, and Achromobacter on the surfaces. Furthermore, among all the element components contained in alloys investigated in this research, copper element showed the strongest influences on the composition and function of microbial communities in the biofilms formed on various metallic surfaces.
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Affiliation(s)
- Xiaofan Zhai
- Key Laboratory of Marine Eco-Environmental Science and Technology, Marine Bioresource and Environment Research Center, First Institute of Oceanography, Ministry of Natural Resources, Qingdao, China
- CAS Key Laboratory of Marine Environmental Corrosion and Bio-Fouling, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- Open Studio for Marine Corrosion and Protection, Pilot National Laboratory for Marine Science and Technology (Qingdao), Qingdao, China
- Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao, China
| | - Wei Cao
- Key Laboratory of Marine Eco-Environmental Science and Technology, Marine Bioresource and Environment Research Center, First Institute of Oceanography, Ministry of Natural Resources, Qingdao, China
| | - Yimeng Zhang
- CAS Key Laboratory of Marine Environmental Corrosion and Bio-Fouling, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- Open Studio for Marine Corrosion and Protection, Pilot National Laboratory for Marine Science and Technology (Qingdao), Qingdao, China
- Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao, China
| | - Peng Ju
- Key Laboratory of Marine Eco-Environmental Science and Technology, Marine Bioresource and Environment Research Center, First Institute of Oceanography, Ministry of Natural Resources, Qingdao, China
- *Correspondence: Peng Ju,
| | - Juna Chen
- Navy Submarine Academy, Qingdao, China
- Juna Chen,
| | - Jizhou Duan
- CAS Key Laboratory of Marine Environmental Corrosion and Bio-Fouling, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- Open Studio for Marine Corrosion and Protection, Pilot National Laboratory for Marine Science and Technology (Qingdao), Qingdao, China
- Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao, China
| | - Chengjun Sun
- Key Laboratory of Marine Eco-Environmental Science and Technology, Marine Bioresource and Environment Research Center, First Institute of Oceanography, Ministry of Natural Resources, Qingdao, China
- Chengjun Sun,
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4
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Luo Q, Liu L, Hou D. Bioremediation of oily seawater by Bacteria immobilization on a novel carrier material containing nutrients. J Microbiol Methods 2021; 192:106392. [PMID: 34915068 DOI: 10.1016/j.mimet.2021.106392] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2021] [Revised: 12/05/2021] [Accepted: 12/09/2021] [Indexed: 11/18/2022]
Abstract
A novel carrier material was obtained by coating puffed rhubarb rice (PRR) with calcium alginate (CA) membrane. The carrier material was prepared to contain oil-degrading bacterial strains and inorganic nutrients through entrapping them in different locations. This formulation possessed floatability, biodegradability and nutrient slow-release properties. Therefore, it could be applied for oil biodegradation on seawater surfaces. For controlling the release rate of nutrients, the optimal preparation technique was established. The number of viable cells immobilized on the carrier material reached 2 × 109 CFU/g. This formulation could be stored at -20 °C for three months without a significant decrease in the number of viable immobilized cells (4 × 108 CFU/g). Scanning electron microscope (SEM) results showed that the cells were immobilized on the outer CA membrane, and the inorganic nutrients were entrapped in the inner PRR and CA membrane. The immobilized cells were able to remove 86% of the diesel oil at an initial diesel oil concentration of 1% (v/v), an incubation temperature of 37 °C, during three days of incubation. Gas chromatography-mass spectrometry (GC-MS) analysis results showed that most components of diesel oil were degraded by the formulations.
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Affiliation(s)
- Qun Luo
- Naval Medical Center of Chinese People's Liberation Army, Shanghai 200433, China
| | - Lina Liu
- Naval Medical Center of Chinese People's Liberation Army, Shanghai 200433, China
| | - Dengyong Hou
- Naval Medical Center of Chinese People's Liberation Army, Shanghai 200433, China.
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Luo Q, Hou D, Jiang D, Chen W. Bioremediation of marine oil spills by immobilized oil-degrading bacteria and nutrition emulsion. Biodegradation 2021; 32:165-177. [PMID: 33683578 DOI: 10.1007/s10532-021-09930-5] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2020] [Accepted: 02/15/2021] [Indexed: 11/28/2022]
Abstract
The combination of bioaugmentation and biostimulation was used to speed up the bioremediation of marine oil spills. A novel carrier material that consisted of puffed panicum miliaceum (PPM), calcium alginate and chitosan was prepared. The porous structure and low density of PPM ensured this carrier material not only had appropriate physical and biological properties for the aggregation of microorganisms but also was biodegradable and floating on the seawater surface for bioremediation of oil pollution. An oil-degrading bacterial consortium was immobilized via adsorption on the carrier material. The immobilized bacteria were observed with scanning electron microscopy. The number of viable cells immobilized on the material was approximately 1.12 × 108 CFU/g. To solve the problem of nutrients supplementation in seawater, an emulsion formed with urea solution, soybean lecithin, alcohol and oleic acid was prepared as oleophilic fertilizer. The results from laboratory and field mesocosm experiments showed that the combination of immobilized bacteria and the emulsion achieved a higher oil removal efficiency compared with the use of them separately. The results of field mesocosm experiments conducted in the coastal seawater showed that most of the petroleum pollutant (> 98%) was removed from the surface of seawater in 24 h. GC-MS analysis showed that most components of petroleum pollutants had been removed. This formula with immobilized bacteria and emulsion can be exploited further for the bioremediation of marine oil spills.
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Affiliation(s)
- Qun Luo
- Naval Medical Center of Chinese People's Liberation Army, Shanghai, 200433, China.
| | - Dengyong Hou
- Naval Medical Center of Chinese People's Liberation Army, Shanghai, 200433, China
| | - Dingwen Jiang
- Naval Medical Center of Chinese People's Liberation Army, Shanghai, 200433, China
| | - Wei Chen
- Naval Medical Center of Chinese People's Liberation Army, Shanghai, 200433, China
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6
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Ho MT, Li MSM, McDowell T, MacDonald J, Yuan ZC. Characterization and genomic analysis of a diesel-degrading bacterium, Acinetobacter calcoaceticus CA16, isolated from Canadian soil. BMC Biotechnol 2020; 20:39. [PMID: 32711499 PMCID: PMC7477861 DOI: 10.1186/s12896-020-00632-z] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2019] [Accepted: 07/16/2020] [Indexed: 12/18/2022] Open
Abstract
Background With the high demand for diesel across the world, environmental decontamination from its improper usage, storage and accidental spills becomes necessary. One highly environmentally friendly and cost-effective decontamination method is to utilize diesel-degrading microbes as a means for bioremediation. Here, we present a newly isolated and identified strain of Acinetobacter calcoaceticus (‘CA16’) as a candidate for the bioremediation of diesel-contaminated areas. Results Acinetobacter calcoaceticus CA16 was able to survive and grow in minimal medium with diesel as the only source of carbon. We determined through metabolomics that A. calcoaceticus CA16 appears to be efficient at diesel degradation. Specifically, CA16 is able to degrade 82 to 92% of aliphatic alkane hydrocarbons (CnHn + 2; where n = 12–18) in 28 days. Several diesel-degrading genes (such as alkM and xcpR) that are present in other microbes were also found to be activated in CA16. Conclusions The results presented here suggest that Acinetobacter strain CA16 has good potential in the bioremediation of diesel-polluted environments.
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Affiliation(s)
- Margaret T Ho
- Department of Microbiology and Immunology, The University of Western Ontario, 1151 Richmond Street, London, Ontario, N6A 5B7, Canada.,Institute of Biomaterials and Biomedical Engineering, University of Toronto, Toronto, Ontario, Canada
| | - Michelle S M Li
- Department of Microbiology and Immunology, The University of Western Ontario, 1151 Richmond Street, London, Ontario, N6A 5B7, Canada
| | - Tim McDowell
- London Research and Development Centre, Agriculture and Agri-Food Canada, 1391 Sandford Street, London, Ontario, N5V 4T3, Canada
| | - Jacqueline MacDonald
- Department of Microbiology and Immunology, The University of Western Ontario, 1151 Richmond Street, London, Ontario, N6A 5B7, Canada
| | - Ze-Chun Yuan
- Department of Microbiology and Immunology, The University of Western Ontario, 1151 Richmond Street, London, Ontario, N6A 5B7, Canada. .,London Research and Development Centre, Agriculture and Agri-Food Canada, 1391 Sandford Street, London, Ontario, N5V 4T3, Canada.
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7
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Li X, Zheng R, Zhang X, Liu Z, Zhu R, Zhang X, Gao D. A novel exoelectrogen from microbial fuel cell: Bioremediation of marine petroleum hydrocarbon pollutants. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2019; 235:70-76. [PMID: 30677657 DOI: 10.1016/j.jenvman.2019.01.007] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/02/2018] [Revised: 12/31/2018] [Accepted: 01/02/2019] [Indexed: 06/09/2023]
Abstract
In the past decades, the microbial fuel cell (MFC) technology has caught the attention of the scientific community for its potential in transforming petroleum hydrocarbon (PHC) pollutants directly into electricity through microbial catalyzed anodic. The microbe was one of the most important factors that both influence MFCs and PHC degradation. Here we aimed to identify new microbes to expand the list of microbial species which are both electrogenic and diesel hydrocarbon degrading. In this text, we depicted a strain of microbe named E2, isolated from on the anode surface of MFC, and using diesel as sole carbon source. E2 exhibited electrochemical activity in cyclic voltammetry curve, implicating that it had electrogenic ability. E2 degraded about 50% diesel (3.26 g/L) in maximum during 8 days. Pyrosequencing of 16S rRNA gene of E2 revealed E2 was a sub-strain of Vibrio. Corresponding to salt and alkali tolerant properties of vibrio, the optimal condition for E2 in degrading diesel was 3%-4% in salinity, and pH 8-9 in mineral medium. Collectively, as a member of Gammaproteobacteria class, E2 was novel marine microbe both electricity generation and diesel degradation, which may attract its future application toward artificial microbial community construction in MFC in promoting the PHC pollution removal.
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Affiliation(s)
- Xiaoling Li
- Applied Chemistry Key Lab of Hebei Province, Department of Bioengineering, Yanshan University, Qinhuangdao 066004, China
| | - Ruiyu Zheng
- Applied Chemistry Key Lab of Hebei Province, Department of Bioengineering, Yanshan University, Qinhuangdao 066004, China
| | - Xuwu Zhang
- Applied Chemistry Key Lab of Hebei Province, Department of Bioengineering, Yanshan University, Qinhuangdao 066004, China
| | - Zhiwei Liu
- Applied Chemistry Key Lab of Hebei Province, Department of Bioengineering, Yanshan University, Qinhuangdao 066004, China
| | - Ruiyan Zhu
- Applied Chemistry Key Lab of Hebei Province, Department of Bioengineering, Yanshan University, Qinhuangdao 066004, China; Asparagus Industry Technology Research Institute of Hebei Province, Qinhuangdao 066004, China
| | - Xiaoyu Zhang
- Applied Chemistry Key Lab of Hebei Province, Department of Bioengineering, Yanshan University, Qinhuangdao 066004, China
| | - Dawei Gao
- Applied Chemistry Key Lab of Hebei Province, Department of Bioengineering, Yanshan University, Qinhuangdao 066004, China; Asparagus Industry Technology Research Institute of Hebei Province, Qinhuangdao 066004, China.
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8
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Liu C, Zhang R, Yang H, Zhang J, Wang H, Chang L, Zhan Y, Xu Q. Investigating the performance of an anaerobic baffled bioreactor for the biodegradation of alkaline-surfactant-polymer in oilfield water. ENVIRONMENTAL TECHNOLOGY 2018; 39:2669-2678. [PMID: 28818028 DOI: 10.1080/09593330.2017.1364304] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
The anaerobic baffled reactor (ABR) was used to treat alkaline-surfactant-polymer (ASP) flooding wastewater in the Daqing oilfield. With the ABR, hydraulic retention time (HRT)was reduced from 72 to 24 h, the bioreactor purification capability gradually improved. After the ABR running for 100 days, the removal rate of raw oil, suspended solid and surfactant reached 99.8%, 94.4% and 50%, respectively; alkali, polymer and viscosity were removed at a rate of about 16%, 7% and 20%, respectively. There were 39 kinds of organic materials detected by GCMS in the original water sample, while only 12 kinds of organics were left in the ABR outfall. The above results showed that the anaerobic, facultative anaerobic and aerobic compartment of ABR have strong capability of biodegrading petroleum pollution matter. Pyrosequencing analysis of the 16S rRNA indicated that Acinetobacter, Arcobacter, Pseudomonas and Paracoccus were the dominant bacteria genera present in the ABR reactor, among them Acinetobacter was the dominant species in the bacterial community.
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Affiliation(s)
- Changli Liu
- a College of Life Sciences , Northeast Forestry University , Harbin , People's Republic of China
| | - Rongshu Zhang
- a College of Life Sciences , Northeast Forestry University , Harbin , People's Republic of China
| | - Hongyi Yang
- a College of Life Sciences , Northeast Forestry University , Harbin , People's Republic of China
| | - Jie Zhang
- a College of Life Sciences , Northeast Forestry University , Harbin , People's Republic of China
| | - Hongwei Wang
- a College of Life Sciences , Northeast Forestry University , Harbin , People's Republic of China
| | - Le Chang
- a College of Life Sciences , Northeast Forestry University , Harbin , People's Republic of China
| | - Yuanlong Zhan
- a College of Life Sciences , Northeast Forestry University , Harbin , People's Republic of China
| | - Qijiang Xu
- a College of Life Sciences , Northeast Forestry University , Harbin , People's Republic of China
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9
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Draft Genome Sequence of n-Alkane-Utilizing Acinetobacter sp. Strain BS1, Isolated from Ethane Oxidation Culture. GENOME ANNOUNCEMENTS 2018; 6:6/22/e00465-18. [PMID: 29853505 PMCID: PMC5981037 DOI: 10.1128/genomea.00465-18] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
Here, we report the draft whole-genome sequence of a bacterial strain, Acinetobacter sp. strain BS1, isolated from black soil during ethane oxidation culture. Medium- or long-chain alkane oxidation-related genes were identified; however, the short-chain alkane monooxygenase was not detected.
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10
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Zhao G, Sheng Y, Wang C, Yang J, Wang Q, Chen L. In situ microbial remediation of crude oil-soaked marine sediments using zeolite carrier with a polymer coating. MARINE POLLUTION BULLETIN 2018; 129:172-178. [PMID: 29680535 DOI: 10.1016/j.marpolbul.2018.02.030] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2017] [Revised: 02/12/2018] [Accepted: 02/16/2018] [Indexed: 06/08/2023]
Abstract
Marine oil spill pollution is an important environmental problem in the world, especially crude oil-soaked marine sediments, because they are difficult to be remediated. In this study, in situ bioremediation of oil-soaked sediment was performed in the middle of the Bohai Sea. Oil-degrading bacteria were adsorbed on powdery zeolite (PZ)/granular zeolites (GZ) surfaces and then wrapped with poly-γ glutamic acid (γ-PGA). Settling column and wave flume experiments were conducted to model marine conditions and to select appropriate biological reagents. The optimal conditions were as follows: the average diameter of GZ 3 mm, mass ratio of GZ/PZ 2:1, and concentration of γ-PGA 7%. After bioremediation, over 50% of most oil-spilled pollutants n-alkanes (C12 to C27) and polycyclic aromatic hydrocarbons were degraded in 70 days. This work resulted in a successful trial of in situ bioremediation of oil-soaked marine sediments.
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Affiliation(s)
- Guoqiang Zhao
- Research Center for Coastal Environment Engineering Technology of Shandong Province, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, China; University of Chinese Academy of Sciences, Beijing, China
| | - Yanqing Sheng
- Research Center for Coastal Environment Engineering Technology of Shandong Province, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, China.
| | - Chuanyuan Wang
- Research Center for Coastal Environment Engineering Technology of Shandong Province, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, China
| | - Jian Yang
- Research Center for Coastal Environment Engineering Technology of Shandong Province, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, China
| | - Qiaoning Wang
- Research Center for Coastal Environment Engineering Technology of Shandong Province, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, China
| | - Lingxin Chen
- Research Center for Coastal Environment Engineering Technology of Shandong Province, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, China
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Isolation, characterization, and optimization of biosurfactant production by an oil-degrading Acinetobacter junii B6 isolated from an Iranian oil excavation site. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2017. [DOI: 10.1016/j.bcab.2017.08.007] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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12
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Dellagnezze BM, Vasconcellos SP, Angelim AL, Melo VMM, Santisi S, Cappello S, Oliveira VM. Bioaugmentation strategy employing a microbial consortium immobilized in chitosan beads for oil degradation in mesocosm scale. MARINE POLLUTION BULLETIN 2016; 107:107-117. [PMID: 27158046 DOI: 10.1016/j.marpolbul.2016.04.011] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/26/2015] [Revised: 04/06/2016] [Accepted: 04/08/2016] [Indexed: 05/22/2023]
Abstract
A bacterial consortium composed by four metagenomic clones and Bacillus subtilis strain CBMAI 707, all derived from petroleum reservoirs, was entrapped in chitosan beads and evaluated regarding hydrocarbon degradation capability. Experiments were carried out in mesocosm scale (3000L) with seawater artificially polluted with crude oil. At different time intervals, mesocosms were sampled and subjected to GC-FID and microbiological analyses, as total and heterotrophic culturable bacterial abundance (DAPI and CFU count), biological oxygen demand (BOD) and taxonomic diversity (massive sequencing of 16S rRNA genes). The results obtained showed that degradation of n-alkane hydrocarbons was similar between both treatments. However, aromatic compound degradation was more efficient in bioaugmentation treatment, with biodegradation percentages reaching up to 99% in 30days. Community dynamics was different between treatments and the consortium used in the bioaugmentation treatment contributed to a significant increase in aromatic hydrocarbon degradation.
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Affiliation(s)
- B M Dellagnezze
- Division of Microbial Resources, Research Center for Chemistry, Biology and Agriculture (CPQBA), Campinas University - UNICAMP, CP 6171, CEP 13081-970 Campinas, SP, Brazil.
| | - S P Vasconcellos
- Federal University of São Paulo (UNIFESP), Rua Prof. Artur Riedel, 275, CEP 09972-270, Jd. Eldorado, Diadema, SP, Brazil
| | - A L Angelim
- Lembiotech (UFC), Federal University of Ceará, Av. Humberto Monte, 2977, Campus do Pici, Bloco 909, 60455-000, Fortaleza, CE, Brazil
| | - V M M Melo
- Lembiotech (UFC), Federal University of Ceará, Av. Humberto Monte, 2977, Campus do Pici, Bloco 909, 60455-000, Fortaleza, CE, Brazil
| | - S Santisi
- Institute for Coastal Marine Environment (IAMC), Consiglio Nazionale delle Ricerche (CNR) of Messina, Messina, Italy
| | - S Cappello
- Institute for Coastal Marine Environment (IAMC), Consiglio Nazionale delle Ricerche (CNR) of Messina, Messina, Italy
| | - V M Oliveira
- Division of Microbial Resources, Research Center for Chemistry, Biology and Agriculture (CPQBA), Campinas University - UNICAMP, CP 6171, CEP 13081-970 Campinas, SP, Brazil
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13
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Nkem BM, Halimoon N, Yusoff FM, Johari WLW, Zakaria MP, Medipally SR, Kannan N. Isolation, identification and diesel-oil biodegradation capacities of indigenous hydrocarbon-degrading strains of Cellulosimicrobium cellulans and Acinetobacter baumannii from tarball at Terengganu beach, Malaysia. MARINE POLLUTION BULLETIN 2016; 107:261-268. [PMID: 27085593 DOI: 10.1016/j.marpolbul.2016.03.060] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2015] [Revised: 03/25/2016] [Accepted: 03/29/2016] [Indexed: 06/05/2023]
Abstract
In this study, we isolated two indigenous hydrocarbon-degrading bacteria from tarball found in Rhu Sepuluh beach, Terengganu, Malaysia. These bacteria were identified based on their physiological characteristic and 16S rRNA gene sequence analysis, and they showed 99% similarity with Cellulosimicrobium cellulans DSM 43879 and Acinetobacter baumannii ATCC 19606 respectively. Their hydrocarbon-degrading capabilities were tested using diesel-oil as sole carbon source. Results analysed using GC-MS, showed diesel-oil alkanes were degraded an average 64.4% by C. cellulans and 58.1% by A. baumannii with medium optical density reaching 0.967 (C. cellulans) and 1.515 (A. baumannii) in minimal salt media at 32°C for 10days. Individual diesel-oil alkanes were degraded between 10%-95.4% by C. cellulans and 0.2%-95.9% by A. baumannii. Both strains utilized diesel-oil for growth. The study suggests both strains are part of indigenous hydrocarbon-degrading bacteria in tarball with potential for bioremediation of oil-polluted marine environment.
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Affiliation(s)
- Bruno Martins Nkem
- Faculty of Environmental Studies, Department of Environmental Sciences, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor Darul Ehsan, Malaysia
| | - Normala Halimoon
- Faculty of Environmental Studies, Department of Environmental Sciences, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor Darul Ehsan, Malaysia.
| | - Fatimah Md Yusoff
- Laboratory of Marine Biotechnology, Institute of Bioscience, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor Darul Ehsan, Malaysia
| | - Wan Lufti Wan Johari
- Faculty of Environmental Studies, Department of Environmental Sciences, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor Darul Ehsan, Malaysia
| | - Mohamad Pauzi Zakaria
- Faculty of Environmental Studies, Department of Environmental Sciences, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor Darul Ehsan, Malaysia
| | - Srikanth Reddy Medipally
- Laboratory of Marine Biotechnology, Institute of Bioscience, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor Darul Ehsan, Malaysia
| | - Narayanan Kannan
- Faculty of Environmental Studies, Department of Environmental Sciences, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor Darul Ehsan, Malaysia
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14
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Leema Roseline T, Sachindra N. Characterization of extracellular agarase production by Acinetobacter junii PS12B, isolated from marine sediments. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2016. [DOI: 10.1016/j.bcab.2016.04.007] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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15
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Liao X, Chen C, Zhang J, Dai Y, Zhang X, Xie S. Dimethylamine biodegradation by mixed culture enriched from drinking water biofilter. CHEMOSPHERE 2015; 119:935-940. [PMID: 25280176 DOI: 10.1016/j.chemosphere.2014.09.020] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2014] [Revised: 08/26/2014] [Accepted: 09/05/2014] [Indexed: 06/03/2023]
Abstract
Dimethylamine (DMA) is one of the important precursors of drinking water disinfection by-product N-nitrosodimethylamine (NDMA). Reduction of DMA to minimize the formation of carcinogenic NDMA in drinking water is of practical importance. Biodegradation plays a major role in elimination of DMA pollution in the environment, yet information on DMA removal by drinking water biofilter is still lacking. In this study, microcosms with different treatments were constructed to investigate the potential of DMA removal by a mixed culture enriched from a drinking water biofilter and the effects of carbon and nitrogen sources. DMA could be quickly mineralized by the enrichment culture. Amendment of a carbon source, instead of a nitrogen source, had a profound impact on DMA removal. A shift in bacterial community structure was observed with DMA biodegradation, affected by carbon and nitrogen sources. Proteobacteria was the predominant phylum group in DMA-degrading microcosms. Microorganisms from a variety of bacterial genera might be responsible for the rapid DMA mineralization.
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Affiliation(s)
- Xiaobin Liao
- School of Environment, Tsinghua University, Beijing 100084, China
| | - Chao Chen
- School of Environment, Tsinghua University, Beijing 100084, China
| | - Jingxu Zhang
- State Key Joint Laboratory of Environmental Simulation and Pollution Control, College of Environmental Sciences and Engineering, Peking University, Beijing 100871, China
| | - Yu Dai
- State Key Joint Laboratory of Environmental Simulation and Pollution Control, College of Environmental Sciences and Engineering, Peking University, Beijing 100871, China
| | - Xiaojian Zhang
- School of Environment, Tsinghua University, Beijing 100084, China
| | - Shuguang Xie
- State Key Joint Laboratory of Environmental Simulation and Pollution Control, College of Environmental Sciences and Engineering, Peking University, Beijing 100871, China.
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16
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Huang L, Xie J, Lv BY, Shi XF, Li GQ, Liang FL, Lian JY. Optimization of nutrient component for diesel oil degradation by Acinetobacter beijerinckii ZRS. MARINE POLLUTION BULLETIN 2013; 76:325-332. [PMID: 24070455 DOI: 10.1016/j.marpolbul.2013.03.037] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/24/2012] [Revised: 03/25/2013] [Accepted: 03/28/2013] [Indexed: 06/02/2023]
Abstract
A new bacterial strain that is capable of using diesel as the sole carbon source was isolated from the petroleum-contaminated soil of Xinjiang oil field, Northwest China. This bacterium was identified on the basis of its morphological and physiological characteristics and 16S rRNA gene sequence analysis, and it showed the greatest similarity with Acinetobacter beijerinckii 302-PWB-OH1 (99.86%). In order to enhance degradation efficiency, single-factor experiments and response surface methodology (RSM) were employed to optimize the nutrients used in artificial seawater. The results of this study revealed that 2.05 g L(-1) (NH4)2SO4, 1.46 g L(-1) Na2HPO4, and 14 mg L(-1) yeast extract in artificial seawater resulted in increasing the diesel degradation rate of the bacterial strain from 20.87% to 80.40% within 7 days. The actual experimental results were in agreement with the prediction.
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Affiliation(s)
- Lei Huang
- College of Chemistry and Chemical Engineering, Tianjin University of Technology, Tianjin 300384, China
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