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Bonnet V, Clodic G, Sonnendecker C, Zimmermann W, Przybylski C. Ion mobility mass spectrometry enables the discrimination of positional isomers and the detection of conformers from cyclic oligosaccharides-metals supramolecular complexes. Carbohydr Polym 2023; 320:121205. [PMID: 37659808 DOI: 10.1016/j.carbpol.2023.121205] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2023] [Revised: 07/07/2023] [Accepted: 07/12/2023] [Indexed: 09/04/2023]
Abstract
Cyclic oligosaccharides are well known to interact with various metals, able to form supramolecular complexes with distinct sizes and shapes. However, the presence of various isomers in a sample, including positional isomers and conformers, can significantly impact molecular recognition, encapsulation ability and chemical reactivity. Therefore, it is crucial to have tools for deep samples probing and correlation establishments. The emerging ion mobility mass spectrometry (IM-MS) has the advantages to be rapid and sensitive, but is still in its infancy for the investigation of supramolecular assemblies. In the herein study, it was demonstrated that IM-MS is suitable to discriminate several isomers of cyclodextrins (CD)-metals complexes, used as cyclic oligosaccharide models. In this sense, we investigated branched 6-O-α-glucosyl- or 6-O-α-maltosyl-β-cyclodextrins (G1-β-CD and G2-β-CD) and their purely cyclic isomers: CD8 (γ-CD) and CD9 (δ-CD). The corresponding collision cross section (CCS) values were deducted for the main positive singly and doubly charged species. Experimental CCS values were matched with models obtained from molecular modelling. The high mobility resolving power and resolution enabled discrimination of positional isomers, identification of various conformers and accurate relative content estimation. These results represent a milestone in the identification of carbohydrate conformers that cannot be easily reached by other approaches.
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Affiliation(s)
- Véronique Bonnet
- Laboratoire de Glycochimie, des Antimicrobiens et des Agroressources, Université de Picardie Jules Verne, 80039 Amiens, France
| | - Gilles Clodic
- Sorbonne Université, Mass Spectrometry Sciences Sorbonne University, MS3U Platform, UFR 926, UFR 927, Paris, France
| | | | - Wolfgang Zimmermann
- Institute of Analytical Chemistry, Leipzig University, 04103 Leipzig, Germany
| | - Cédric Przybylski
- Sorbonne Université, CNRS, Institut Parisien de Chimie Moléculaire, IPCM, 4 Place Jussieu, 75005 Paris, France; Université Paris-Saclay, Univ Evry, CNRS, LAMBE, Evry-Courcouronnes 91000, France.
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Preparation and Characterization of Branched β-Cyclodextrins Having α-L-Fucopyranose and a Study of Their Functions. Biosci Biotechnol Biochem 2014; 73:562-9. [DOI: 10.1271/bbb.80609] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Titov DV, Gening ML, Tsvetkov YE, Nifantiev NE. Conjugates of cyclooligosaccharide scaffolds and carbohydrate ligands: Methods for synthesis and the interaction with lectins. RUSSIAN JOURNAL OF BIOORGANIC CHEMISTRY 2013; 39:509-46. [DOI: 10.1134/s1068162013050142] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Kimura M, Masui Y, Shirai Y, Honda C, Moriwaki K, Imai T, Takagi U, Kiryu T, Kiso T, Murakami H, Nakano H, Kitahata S, Miyoshi E, Tanimoto T. Preparation of branched cyclomaltoheptaose with 3-O-α-l-fucopyranosyl-α-d-mannopyranose and changes in fucosylation of HCT116 cells treated with the fucose-modified cyclomaltoheptaose. Carbohydr Res 2013; 374:49-58. [DOI: 10.1016/j.carres.2013.03.022] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2013] [Revised: 03/23/2013] [Accepted: 03/23/2013] [Indexed: 12/01/2022]
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Affiliation(s)
- Ping Zhang
- Alberta Glycomics Centre and Department of Chemistry, University of Calgary, 2500, University Drive NW, Calgary, Alberta T2N 1N4, Canada
| | - Aixia Wang
- Alberta Glycomics Centre and Department of Chemistry, University of Calgary, 2500, University Drive NW, Calgary, Alberta T2N 1N4, Canada
| | - Lina Cui
- Alberta Glycomics Centre and Department of Chemistry, University of Calgary, 2500, University Drive NW, Calgary, Alberta T2N 1N4, Canada
| | - Chang-Chun Ling
- Alberta Glycomics Centre and Department of Chemistry, University of Calgary, 2500, University Drive NW, Calgary, Alberta T2N 1N4, Canada
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Preparation, characterization, and biological evaluation of 6(I),6(IV)-di-O-[α-l-fucopyranosyl-(1→6)-2-acetamido-2-deoxy-β-d-glucopyranosyl]-cyclomaltoheptaose and 6-O-[α-l-fucopyranosyl-(1→6)-2-acetamido-2-deoxy-β-d-glucopyranosyl]-cyclomaltoheptaose. Carbohydr Res 2011; 346:1792-800. [PMID: 21745656 DOI: 10.1016/j.carres.2011.06.013] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2011] [Revised: 05/31/2011] [Accepted: 06/08/2011] [Indexed: 11/22/2022]
Abstract
6(I),6(IV)-Di-O-[α-l-fucopyranosyl-(1→6)-2-acetamido-2-deoxy-β-d-glucopyranosyl]-cyclomaltoheptaose (βCD) {6(I),6(IV)-di-O-[α-l-Fuc-(1→6)-β-d-GlcNAc]-βCD (5)} and 6-O-[α-l-fucopyranosyl-(1→6)-2-acetamido-2-deoxy-β-d-glucopyranosyl]-βCD {6-O-[α-l-Fuc-(1→6)-β-d-GlcNAc]-βCD (6)} were chemically synthesized using the corresponding authentic compounds, bis(2,3-di-O-acetyl)-pentakis(2,3,6-tri-O-acetyl)-βCD as the glycosyl acceptor and 2,3,4-tri-O-benzyl-α-l-fucopyranosyl-(1→6)-3,4-di-O-acetyl-2-deoxy-2-(2,2,2-trichloroethoxycarbonylamino)-d-glucopyranosyl trichloroacetimidate as the fuco-glucosaminyl donor. NMR confirmed that α-l-Fuc-(1→6)-d-GlcNAc was bonded by β-linking to the βCD ring. To evaluate biological efficiency, the biological activities of the new branched βCDs were examined. The cell detachment activity of 5 was lower than that of 6 in real-time cell sensing (RT-CES) assay, indicating that 5 has lower toxicity. In SPR analysis, 5 had a higher special binding with AAL, a fucose-recognizing lectin. These results suggest that 5 could be an efficient drug carrier directed at cells expressing fucose-binding proteins.
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Nishi Y, Yamane N, Tanimoto T. Preparation and characterization of 6I,6n-di-O-(l-fucopyranosyl)-β-cyclodextrin (n=II–IV) and investigation of their functions. Carbohydr Res 2007; 342:2173-81. [PMID: 17637460 DOI: 10.1016/j.carres.2007.06.016] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2006] [Revised: 06/11/2007] [Accepted: 06/12/2007] [Indexed: 11/23/2022]
Abstract
Three positional isomers of 6(I),6(n)-di-O-(beta-L-fucopyranosyl)-cyclomaltoheptaose [6(I),6(n)-di-O-(beta-L-Fuc)-beta-cyclodextrin, -betaCD, n=II-IV] were chemically synthesized using the corresponding authentic compounds, 6(I),6(n)-di-O-(tert-butyldimethylsilyl)-betaCD (n=II-IV), as the fucosyl acceptors, and 2,3,4-tri-O-acetyl-L-fucopyranosyl trichloroacetimidate as the fucosyl donor. Their structures were analyzed by HPLC, MS, and NMR spectroscopy. The hemolytic activities of L-Fuc-betaCDs were lower than that of betaCD, while the solubilities of these branched CDs in water were much higher than that of betaCD. The molecular interaction between these compounds and the fucose-binding lectin Aleuria aurantia lectin (AAL) was investigated using an optical biosensor based on a surface plasmon resonance (SPR) technique. The order of binding affinity, as a function of the fucose-binding position, was 6(I),6(IV)->6(I),6(III)->6(I),6(II)-di-O-(beta-L-Fuc)-betaCD>6-O-(beta-L-Fuc)-betaCD.
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Affiliation(s)
- Yuki Nishi
- School of Pharmaceutical Sciences, Mukogawa Women's University, 11-68 Koshien, Nishinomiya 663-8179, Japan
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Tanimoto T, Ikuta A, Koizumi K. Preparation, Isolation and Characterization of all of the Regioisomeric 61, 6N-Bis-O-(Monomethoxytrityl) and-(Dimethoxytrityl) Derivatives of Cyclomalto-Olgosaccharides. J Carbohydr Chem 2006. [DOI: 10.1080/07328309708005760] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Affiliation(s)
- Toshiko Tanimoto
- a School of Pharmaceutical Sciences, Mukogawa Women's University , 11-68 Koshien Kyuban-cho, Nishinomiya, 663, Japan
| | - Akiko Ikuta
- a School of Pharmaceutical Sciences, Mukogawa Women's University , 11-68 Koshien Kyuban-cho, Nishinomiya, 663, Japan
| | - Kyoko Koizumi
- a School of Pharmaceutical Sciences, Mukogawa Women's University , 11-68 Koshien Kyuban-cho, Nishinomiya, 663, Japan
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Ishizuka Y, Takasugi K, Tsutsumi Y, Kanazawa K, Nemoto T, Kiyoshi T, Nakanishi H. Application of ultra-high magnetic field for saccharide molecules: 1H NMR spectra of 6-O-α-d-glucopyranosyl-cyclomaltoheptaose and -cyclomaltohexaose. Carbohydr Res 2005; 340:1343-50. [PMID: 15854604 DOI: 10.1016/j.carres.2005.02.019] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2004] [Accepted: 02/16/2005] [Indexed: 10/25/2022]
Abstract
1H NMR spectra of G1-alpha-CD and G1-beta-CD were recorded using a spectrometer equipped with a 21.6 T magnet. An ultra-high magnetic field was effective for detecting 1H NMR signals with a small difference in chemical shifts. Introducing a glucosyl group onto CDs as a branch caused deformation of equilibrated 1H signals of cyclodextrin. Particularly, 1H signals in branched glucose were shifted greatly.
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Affiliation(s)
- Yasuko Ishizuka
- Research Center for Glycoscience, National Institute of Advanced Industrial Science and Technology, Central-6, 1-1 Higashi, Tsukuba, Ibaraki 305-8566, Japan.
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Ishizuka Y, Nemoto T, Kanazawa K, Nakanishi H. 1H NMR spectra of branched-chain cyclomaltohexaoses (α-cyclodextrins). Carbohydr Res 2004; 339:777-85. [PMID: 14980819 DOI: 10.1016/j.carres.2003.12.021] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2003] [Accepted: 12/20/2003] [Indexed: 11/30/2022]
Abstract
The 1H NMR spectra of seven branched alpha-cyclodextrins (alpha-CDs) were observed and analyzed in detail. They were compared with spectra of alpha-CD and amylose. Although these branched alpha-CDs consist only of alpha-D-glucose with the same alpha-(1-->4) O-glucosyl binding, aside from one exception, differences in chemical shifts of corresponding signals were significantly large. Especially, differences in the chemical shift in anomeric protons were considerably large. Subtle differences in glucosyl binding directly influences chemical shifts of these protons because anomeric protons are located adjacent to the glucosyl binding sites.
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Affiliation(s)
- Yasuko Ishizuka
- Biological Information Research Center, National Institute of Advanced Industrial Science and Technology, Central-6, 1-1 Higashi, Tsukuba, Ibaraki 305-8566, Japan.
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Ikuta A, Mizuta N, Kitahata S, Murata T, Usui T, Koizumi K, Tanimoto T. Preparation and Characterization of Novel Branched .BETA.-Cyclodextrins Having .BETA.-D-Galactose Residues on the Non-reducing Terminal of the Side Chains and Their Specific Interactions with Peanut (Arachis hypogaea) Agglutinin. Chem Pharm Bull (Tokyo) 2004; 52:51-6. [PMID: 14709868 DOI: 10.1248/cpb.52.51] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Six novel branched beta-cyclodextrins (betaCDs) having beta-D-galactose residues on the non-reducing terminal of the sugar side chains, namely 6(1),6(4)-di-O-(beta-D-galactosyl)-betaCD (10), 6-O-(beta-D-galactosyl)-betaCD (11), 6(1),6(4)-di-O-(beta-lactosyl)-betaCD (14), 6-O-(beta-lactosyl)-betaCD (15), 6(1),6(4)-di-O-(4'-O-beta-D-galactosyl-beta-lactosyl)-betaCD (18), and 6-O-(4'-O-beta-D-galactosyl-beta-lactosyl)-betaCD (19), were chemically synthesized using the trichloroacetimidate method. The reaction products were separated by HPLC on an amino column into dibranched and monobranched betaCDs. Their structures were confirmed by mass spectrometry (MS) and two-dimensional (2D) NMR spectroscopic analysis. To study the length of the sugar side chains attached to the CD ring, which leads to differences in the functions of the branched CDs, interactions of these compounds with peanut (Arachis hypogaea) agglutinin (PNA) were investigated using an optical biosensor and an inhibition assay based on hemagglutination. The results showed that all branched betaCDs interacted with PNA, and the binding affinity was 18>14>10 and 19>15>11 when the derivatives were compared on the basis of side chain length.
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Affiliation(s)
- Akiko Ikuta
- School of Pharmaceutical Sciences, Mukogawa Women's University, 11-68 Koshien Kyuban-cho, Nishinomiya 663-8179, Japan
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Tanimoto T, Ikuta A, Sugiyama M, Koizumi K. HPLC analysis of manno-oligosaccharides derived from Saccharomyces cerevisiae mannan using an amino column or a graphitized carbon column. Chem Pharm Bull (Tokyo) 2002; 50:280-3. [PMID: 11848224 DOI: 10.1248/cpb.50.280] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
The chromatographic behavior of manno-oligosaccharides derived from Saccharomyces cerevisiae mannan on two kinds of HPLC columns, an aminopropyl-silica column or a graphitized carbon column (GCC), was investigated. The order of elution of manno-oligosaccharides on both columns with acetonitrile-water was almost the same, that is, the retention increased with increasing molecular size. However, the GCC made it possible to isolate completely two isomers of mannotrioses (M(3)-1 and M(3)-2) with different linkage positions. We reinvestigated the structures of mannobiose (M(2)), M(3)s, and mannotetraose (M(4)) that were completely isolated by matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF-MS) and NMR spectroscopy.
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Affiliation(s)
- Toshiko Tanimoto
- School of Pharmaceutical Sciences, Mukogawa Women s University, Nishinomiya, Japan.
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Ikuta A, Koizumi K, Tanimoto T. Preparation and Characterization of 61,6n-DI-O-(α-D-Galactopyranosyl)Cyclomaltooctaoses. J Carbohydr Chem 2000. [DOI: 10.1080/07328300008544062] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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