Diversity, structure, and size of N(2)O-producing microbial communities in soils--what matters for their functioning?

Molecular evidence of internal carbon-driven partial denitrification in a mainstream pilot A-B system coupled with side-stream EBPR treating municipal wastewater

Achieving mainstream short-cut nitrogen removal via nitrite has become a carbon and energy efficient way, but still remains challenging for low-strength municipal wastewaters. This study integrated sidestream enhanced biological phosphorus removal system in a pilot-scale adsorption/bio-oxidation (A-B) process (named A-B-S2EBPR system) and nitrite accumulation was successfully achieved for treating the municipal wastewater. Nitrite could accumulate to 5.5 ± 0.3 mg N/L in the intermittently aerated tanks of B-stage with the nitrite accumulation ratio (NAR) of 79.1 ± 6.5 %. The final effluent concentration and removal efficiency of total inorganic nitrogen (TIN) were 4.6 ± 1.8 mg N/L and 84.9 ± 5.6 %, respectively. In-situ process performance of nitrogen conversions, routine batch nitrification/denitrification activity tests and functional gene abundance of nitrifiers collectively suggested that the nitrite accumulation was mainly caused by partial denitrification rather than out-selection of nitrite oxidizing bacteria (NOB). Moreover, the single-cell Raman spectroscopy analysis first demonstrated that there was a specific microbial population that could utilize polyhydroxyalkanoates (PHA) as the potential internal carbon source during the partial denitrification process. The integration of S2EBPR brings unique features to the conventional A-B process, such as extended anaerobic retention time, lower oxidation-reduction potential (ORP), much higher and complex volatile fatty acids (VFAs) etc., which can largely reshape the microbial communities. The dominant genera were Acinetobacter and Comamonadaceae, which accounted for (17.8 ± 15.5)% and (6.7 ± 3.4)%, respectively, while the relative abundance of conventional nitrifiers was less than 0.2%. This study provides insights into phylogenetic and phenotypic shifts of microbial communities when incorporating S2EBPR into the sustainable A-B process to achieve mainstream short-cut nitrogen removal.

Suitability of coconut bran and biochar as a composite substrate for lettuce cultivation in aquaponic systems

Growth substrates are essential for aquaponic systems and play an important role in vegetable growth and water quality. In this study, we explored an innovative combination of coconut bran and coconut shell biochar (CSB) as a composite growth substrate for lettuce cultivation in aquaponic systems. The study included the control (100 % coconut bran as the growth substrate) and treatment groups (T1-T5; containing 10 %, 20 %, 30 %, 40 %, and 50 % CSB as the growth substrate, respectively). The substrate properties; lettuce growth performance; and soil enzyme activity, nitrogen content, and abundance of microbial communities in the substrate were analyzed to determine the optimal substrate. Our findings indicated that CSB incorporation significantly altered the properties of the substrate, resulting in increased dry and bulk densities, pH, and water-holding capacity, and decreased electrical conductivity, water-absorption capacity, and porosity. Furthermore, the fresh weight of lettuce was notably increased in the treatment groups. The activities of fluorescein diacetate hydrolase, urease, nitrate reductase, and hydroxylamine reductase initially increased and further decreased, reaching the maximum in the T3 group. Conversely, the activity of nitrite reductase and contents of available nitrogen, nitrate-nitrogen, and ammonium-nitrogen in the substrates initially decreased and further increased, with the minimum values observed in the T3 group. The microbial sequencing results indicated that CSB incorporation significantly increased the microbial diversity and relative abundance of microorganisms associated with nitrogen transformation. Moreover, 30 % CSB incorporation exhibited the greatest effect on lettuce growth, with a 34.5 % and 31.6 % increase in fresh weight compared to the control during the growth and harvest periods, respectively. This study indicated the enormous potential of biochar in the research and development of green technologies for substrate amendment in aquaponic systems.

Unraveling the drivers for interannual variabilities of N2O fluxes from forests soils across climatic zones

Forest soils are an important source of nitrous oxide (N2O), however, field observations of N2O emission have often exhibited large variabilities when compared with managed agricultural lands. In the last decade, the number of forest N2O studies has increased more than tenfold, but only a few of them have looked into the interannual flux variabilities from the regional scale. Here, we have collected 30 long-term N2O monitoring studies (≥ 2 years) based on a global database, and extracted variabilities (VARFlux) as well as relative variabilities (VAR%, in proportions) of annual N2O fluxes. The relationship of mean annual precipitation (MAP), mean annual temperature (MAT), and nitrogen (N) deposition with flux variabilities was examined to explore the underlying mechanisms for N2O emission on a long-term scale. Our results show that mean VARFlux is 0.43 kg N ha-1 yr-1 and VAR% is 28.68%. Across climatic zones, the subtropical forests have the largest annual N2O fluxes, as well as the largest fluctuations among annual budgets, while the tropics were the smallest. We found that the regulating factors for VARFlux and VAR% are fundamentally different, i.e., MAT and N input determine the annual fluxes as well as VARFlux while MAP and other limiting soil parameters determine VAR%. The relative contributions of different seasons to flux variabilities were also explored, indicating that N2O fluxes of warm and cool seasons are more responsible for the fluctuations in annual fluxes of the (sub)tropical and temperate forests, respectively. Overall, despite the limitation in interpretations due to few long-term studies from literature, this work highlights that significant interannual variabilities are common phenomena for N2O emission from different climatic zones forest soils; by unraveling the divergent drivers for VARFlux and VAR%, we have provided the possibility of improving N2O simulation models for constraining the heterogeneity of N2O emission processes from climatic zones forest soils.

Mineral and organic fertilisation influence ammonia oxidisers and denitrifiers and nitrous oxide emissions in a long-term tillage experiment

Nitrous oxide (N2O) emissions from different agricultural systems have been studied extensively to understand the mechanisms underlying their formation. While a number of long-term field experiments have focused on individual agricultural practices in relation to N2O emissions, studies on the combined effects of multiple practices are lacking. This study evaluated the effect of different tillage [no-till (NT) vs. conventional plough tillage (CT)] in combination with fertilisation [mineral (MIN), compost (ORG), and unfertilised control (CON)] on seasonal N2O emissions and the underlying N-cycling microbial community in one maize growing season. Rainfall events after fertilisation, which resulted in increased soil water content, were the main triggers of the observed N2O emission peaks. The highest cumulative emissions were measured in MIN fertilisation, followed by ORG and CON fertilisation. In the period after the first fertilisation CT resulted in higher cumulative emissions than NT, while no significant effect of tillage was observed cumulatively across the entire season. A higher genetic potential for N2O emissions was observed under NT than CT, as indicated by an increased (nirK + nirS)/(nosZI + nosZII) ratio. The mentioned ratio under NT decreased in the order CON > MIN > ORG, indicating a higher N2O consumption potential in the NT-ORG treatment, which was confirmed in terms of cumulative emissions. The AOB/16S ratio was strongly affected by fertilisation and was higher in the MIN than in the ORG and CON treatments, regardless of the tillage system. Multiple regression has revealed that this ratio is one of the most important variables explaining cumulative N2O emissions, possibly reflecting the role of bacterial ammonia oxidisers in minerally fertilised soil. Although the AOB/16S ratio aligned well with the measured N2O emissions in our experimental field, the higher genetic potential for denitrification expressed by the (nirK + nirS)/(nosZI + nosZII) ratio in NT than CT was not realized in the form of increased emissions. Our results suggest that organic fertilisation in combination with NT shows a promising combination for mitigating N2O emissions; however, addressing the yield gap is necessary before incorporating it in recommendations for farmers.

Sustained bacterial N2O reduction at acidic pH

Nitrous oxide (N2O) is a climate-active gas with emissions predicted to increase due to agricultural intensification. Microbial reduction of N2O to dinitrogen (N2) is the major consumption process but microbial N2O reduction under acidic conditions is considered negligible, albeit strongly acidic soils harbor nosZ genes encoding N2O reductase. Here, we study a co-culture derived from acidic tropical forest soil that reduces N2O at pH 4.5. The co-culture exhibits bimodal growth with a Serratia sp. fermenting pyruvate followed by hydrogenotrophic N2O reduction by a Desulfosporosinus sp. Integrated omics and physiological characterization revealed interspecies nutritional interactions, with the pyruvate fermenting Serratia sp. supplying amino acids as essential growth factors to the N2O-reducing Desulfosporosinus sp. Thus, we demonstrate growth-linked N2O reduction between pH 4.5 and 6, highlighting microbial N2O reduction potential in acidic soils.

Microbial resistance and resilience to drought and rewetting modulate soil N2O emissions with different fertilizers

Future climate models indicate an enhanced severity of regional drought and frequent rewetting events, which may cause cascading impacts on soil nitrogen cycle and nitrous oxide (N2O) emissions, but the underlying microbial mechanism remains largely unknown. Here we report an incubation study that examined the impacts of soil moisture status and nitrification inhibitor (DCD) on the N2O-producers and N2O-reducers following the application of urea and composted swine manure in an acid soil. The soil moisture treatments included 100 % water-holding capacity (WHC) (wetting, 35.3 % gravimetric soil water content), 40 % WHC (drought, 7 % gravimetric soil water content), and 40 % to 100 % WHC (rewetting). The results showed that N2O emissions were significantly decreased under drought conditions and were significantly increased after rewetting. The resistance of ammonia-oxidizing bacteria and nosZII, which was inhibited by urea or manure application, modulated N2O emissions under drought conditions. The resilience of the functional guilds modulated their dominant role in N2O emissions with rewetting. Ammonia-oxidizing bacteria, nirS-type denitrifying bacteria and nosZI showed significant resilience in response to rewetting. Significant negative relationships were observed between N2O emissions and nosZII clade under wetting condition and between N2O emissions and nosZI clade after rewetting. Our results highlighted the importance of microbial resistance and resilience in modulating N2O emissions, which help to better understand the dominant way of N2O emissions, and consequently make efficient mitigation strategies under the global climate change.

Grazing exclusion alters denitrification N2O/(N2O + N2) ratio in alpine meadow of Qinghai-Tibet Plateau

Grazing exclusion has been implemented worldwide as a nature-based solution for restoring degraded grassland ecosystems that arise from overgrazing. However, the effect of grazing exclusion on soil nitrogen cycle processes, subsequent greenhouse gas emissions and underlying mechanisms remain unclear. Here, we investigated the effect of four-year grazing exclusion on plant communities, soil properties, and soil nitrogen cycle-related functional gene abundance in an alpine meadow on the Qinghai-Tibet Plateau. Using an automated continuous-flow incubation system, we performed an incubation experiment and measured soil-borne N2O, N2, and CO2 fluxes to three successive "hot moment" events (precipitation, N deposition, and oxic-to-anoxic transition) between grazing-excluded and grazing soil. Higher soil N contents (total nitrogen, NH4+, NO3-) and extracellular enzyme activities (β-1,4-glucosidase, β-1,4-N-acetyl-glucosaminidase, cellobiohydrolase) are observed under grazing exclusion. The aboveground and litter biomass of plant community was significantly increased by grazing exclusion, but grazing exclusion decreased the average number of plant species and microbial diversity. The N2O + N2 fluxes observed under grazing exclusion were higher than those observed under free grazing. The N2 emissions and N2O/(N2O + N2) ratios observed under grazing exclusion were higher than those observed under free grazing in oxic conditions. Instead, higher N2O fluxes and lower denitrification functional gene abundances (nirS, nirK, nosZ, and nirK + nirS) under anoxia were found under grazing exclusion than under free grazing. The N2O site-preference value indicates that under grazing exclusion, bacterial denitrification contributes more to higher N2O production compared with under free grazing (81.6 % vs. 59.9 %). We conclude that grazing exclusion could improve soil fertility and plant biomass, nevertheless it may lower plant and microbial diversity and increase potential N2O emission risk via the alteration of the denitrification end-product ratio. This indicates that not all grassland management options result in a mutually beneficial situation among wider environmental goals such as greenhouse gas mitigation, biodiversity, and social welfare.

Nitrogen addition enhances seed yield by improving soil enzyme activity and nutrients

Nitrogen (N) addition is a simple and effective field management approach to enhancing plant productivity. Nonetheless, the regulatory mechanisms governing nitrogen concentrations and their effect on soil enzyme activity, nutrient levels, and seed yield in the Festuca kirilowii seed field have yet to be elucidated. Therefore, this study sought to investigate the effect of N fertilizer application on soil enzyme activities, soil nutrients, and seed yield of F. kirilowii Steud cv. Huanhu, the only domesticated variety in the Festuca genus of the Poaceae family, was investigated based on two-year field experiments in the Qinghai-Tibet Plateau (QTP). Results showed that N input significantly affected soil nutrients (potential of hydrogen, total nitrogen, organic matter, and total phosphorus). In addition, soil enzyme activities (urease, catalase, sucrase, and nitrate reductase) significantly increased in response to varying N concentrations, inducing changes in soil nutrient contents. Introducing N improved both seed yield and yield components (number of tillers and number of fertile tillers). These findings suggest that the introduction of different concentrations of N fertilizers can stimulate soil enzyme activity, thus hastening nutrient conversion and increasing seed yield. The exhaustive evaluation of the membership function showed that the optimal N fertilizer treatment was N4 (75 kg·hm-2) for both 2022 and 2023. This finding provides a practical recommendation for improving the seed production of F. kirilowii in QTP.

Aerobic denitrification as an N2O source from microbial communities

Nitrous oxide (N2O) is a potent greenhouse gas of primarily microbial origin. Oxic and anoxic emissions are commonly ascribed to autotrophic nitrification and heterotrophic denitrification, respectively. Beyond this established dichotomy, we quantitatively show that heterotrophic denitrification can significantly contribute to aerobic nitrogen turnover and N2O emissions in complex microbiomes exposed to frequent oxic/anoxic transitions. Two planktonic, nitrification-inhibited enrichment cultures were established under continuous organic carbon and nitrate feeding, and cyclic oxygen availability. Over a third of the influent organic substrate was respired with nitrate as electron acceptor at high oxygen concentrations (>6.5 mg/L). N2O accounted for up to one-quarter of the nitrate reduced under oxic conditions. The enriched microorganisms maintained a constitutive abundance of denitrifying enzymes due to the oxic/anoxic frequencies exceeding their protein turnover-a common scenario in natural and engineered ecosystems. The aerobic denitrification rates are ascribed primarily to the residual activity of anaerobically synthesised enzymes. From an ecological perspective, the selection of organisms capable of sustaining significant denitrifying activity during aeration shows their competitive advantage over other heterotrophs under varying oxygen availabilities. Ultimately, we propose that the contribution of heterotrophic denitrification to aerobic nitrogen turnover and N2O emissions is currently underestimated in dynamic environments.

Nitrous oxide and methane emissions from a Ferralsol as affected by loblolly pine cultivation time in subtropical Brazil

We hypothesized that the age of loblolly pine stands influences soil methane (CH4) and nitrous oxide (N2O) emissions. This is a relevant topic to be studied in subtropical Brazil, where the pine plantation area is increasing considerably. We evaluated N2O and CH4 emissions for two years in a Ferralsol under loblolly pine (Pinus taeda L.) stands of 1, 9 and 18 year-olds and a native forest (NF). We calculated the net CO2eq emission by considering the N2O and CH4 emissions from soil and the carbon (C) accumulation as litter in the forest floor. The soil N2O emission reduced gradually over the loblolly pine cultivation years, whereas CH4 uptake rates showed no clear pattern. Soil N2O emission showed a positive relationship with soil temperature in NF, and with soil ammonium and nitrate intensities in the pine stands. Soil CH4 uptake was inversely related to water-filled pore space in the pine stands, but this relationship was not observed in NF. The soil CH4 uptake rate was 4.6 times higher (p < 0.10) in NF than the average uptake in loblolly pine stands. On the other hand, soil N2O emissions in 9 and 18-year-old stands were similar (p > 0.10) to those in NF (1.3 kg N ha-1 yr-1). Our results suggest that cultivation with loblolly pine for 18 years can reduce soil N2O emission, and the uptake of CH4 in this system offsets 17 % of N2O emissions. Furthermore, the C accumulation as litter in the forest floor of the mature pine stands (9- and 18-year-old) generated a net emission of -1.6 Mg CO2eq ha-1 yr-1, showing to be an expressive offsetting mechanism. Therefore, we conclude that aged loblolly forests can reach N2O emissions levels comparable to those of NF, and the C sequestration in these forests floor can significantly contribute to offset N2O emissions and act as sink for net atmospheric CO2eq.

N2O emission factors for cattle urine: effect of patch characteristics and environmental drivers

Urine patches from grazing cattle are hotspots of nitrous oxide (N2O) emissions. The default IPCC emission factor for urine patches (EFurine) is 0.77% for wet climates and 0.32% for dry climates. However, literature reports a considerable range of cattle urine EF values and urine characteristics used in experimental studies, revealing contrary results on the effects of urine patch characteristics and seasonal pattern. Therefore, we examined N2O emissions and corresponding EFurine values in relation to urine patch characteristics (urine N concentration, urine volume, patch area, urine composition) and environmental drivers (precipitation, water filled pore space, soil temperature). Ten artificial urine application experiments were performed from July 2020 to June 2022 on a pasture located in Eastern Switzerland. Urine N concentration, patch area, volume and urine N composition showed no significant effects on the EFurine value (p > 0.05). EFurine varied, however, strongly over time (0.17-2.05%). A large part of the variation could be predicted either by cumulative precipitation 20 days after urine application using a second order polynomial model (Adj. R2 = 0.60) or average WFPS 30 days after urine application using a linear model (Adj. R2 = 0.45). The derived precipitation model was used to simulate EFurine weekly over the last 20 years showing no significant differences between the seasons of a year. The resulting overall average EFurine was 0.67%. More field studies are needed across sites/regions differing in climate and soil properties to implement a country-specific EF3 for Switzerland and to improve the quantification of N2O emissions at the national scales.

Responses of Rice Yield, N Uptake, NH3 and N2O Losses from Reclaimed Saline Soils to Varied N Inputs

It is of agronomic importance to apply nitrogen (N), but it has high environmental risks in reclaimed saline soils. Therefore, we should apply N fertilizer at an appropriate rate to increase crop yield but decrease N losses. In this soil column experiment, rice yield, N uptake, and ammonia (NH3) and nitrous oxide (N2O) losses were measured in four treatments with no N application (control) and with N applications of 160, 200, and 240 kg/ha (N160, N200, and N240, respectively). The results show that grain yield, spike number, and thousand-kernel weight increased with increases in N application rate, but there was no significant difference in grain yield between N200 and N240. However, the kernels per spike increased first and then decreased with the increase in N application, of which N200 was recorded to have the highest kernels per spike value, which was 16.8 and 9.8% higher than those of N160 and N240, respectively. Total NH3 volatilization of the rice season increased with increasing N input, especially during the first and second supplementary fertilization stages. The NH4+-N concentration of overlying water was relatively lower under the N200 treatment in these two stages, and the yield-scaled NH3 volatilization and the emission factor were the lowest in N200, which were 26.2-27.8% and 4.0-21.0% lower than those of N160 and N240, respectively. Among the three N-applied treatments, N2O losses and the emission factor as well as the yield-scaled N2O emissions were the lowest under the N200 treatment, which had 34.7% and 78.9% lower N2O emissions and 57.8% and 83.5% lower emission factors than those of the N160 and N240 treatments, respectively. Moreover, the gene copies of AOA and AOB amoA, nirS, and nirK in cultivated layer soils all reached the minimum under the N200 treatment. According to the comprehensive effects of N fertilizer on rice grain yield and NH3 and N2O losses, we recommend applying 200 kg/ha to reclaimed saline soil to ensure crop yield and reduce N losses.

Effect of antibiotic and/or heavy metal on nitrogen cycle of sediment-water interface in aquaculture system: Implications from sea cucumber culture

Antibiotics and heavy metals can have a negative impact on the nitrogen (N) cycle and microbial metabolism in coastal aquaculture environment. An indoor simulated culture experiment was conducted to explore how sulfadiazine and lead influence the N cycling in aquatic environment. Specifically, the experiment involved adding sulfadiazine (SDZ), lead (Pb), a combination of SDZ and Pb (SP), and a control group (CK). The fluxes and contents of ammonia nitrogen (NH₄⁺-N), nitrate nitrogen (NO₃^--N) and nitrite nitrogen (NO₂^--N) in sediment-water interface and sediments, the abundance of N cycle function genes (amoA_AOB, hzsA, nar, nirK, nirS, norB and nosZ) and microbiota in sediments were analyzed. The results showed that the presence of SDZ and Pb inhibited the nitrification function gene and nitrifiers abundance in surface sediment, and thus leading to more accumulation of NH₄⁺ and NO₂^- in overlying water. Pb exposure increased the abundances of denitrifying bacteria stimulated the first three steps of denitrification in the sediment, resulting in more removal of NO₃^- from the sediment, but possibly had the risk of releasing more greenhouse gas N₂O. Conversely, the presence of SDZ ultimately inhibited denitrification and anammox bacterial activities in the sediment. This study revealed how heavy metal and antibiotic impair the microbial communities and N cycling function gene expression, leading to the deterioration of typical coastal aquaculture environments.

Long-term biofiltration of gaseous N,N-dimethylformamide: Operational performance and microbial diversity analysis at different conditions

N,N-Dimethylformamide (DMF) is an organic solvent produced in large quantities worldwide. It is considered as a hazardous air pollutant and its emission should be controlled. However, only a limited number of studies have been performed on the removal of gaseous DMF by biological technologies. In this paper, we evaluate the removal of DMF under mesophilic and thermophilic conditions in a lab-scale biofilter for 472 days. The results show that, at ambient temperature, the biofilter achieved an average removal efficiency (RE) of 99.7 ± 0.3 % at Inlet Loads (ILs) up to 297 ± 52 g DFM m^-3 h^-1 (Empty Bed Residence Time (EBRTs) of 10.7 s). However, a decrease in EBRT (6.4 s) led to an unstable outlet concentration and, thus, to a drop in the biofilter performance (average RE: 90 ± 9 %). Moreover, an increase in temperature up to 65 °C led to a gradual decrease in RE (till 91 ± 7 %). Microbial analysis indicates that once the microorganisms encountered DMF, Rhizobiaceae dominated followed by Alcaligenaceae. Afterwards, a strong decrease in Rhizobiaceae was observed at every increase in temperature, and at 65 °C, the taxa were more heterogeneous. Overall, our experimental results indicate that biofiltration is a promising technique to remove DMF from waste gas streams.

Sediment diffusion is feasible to simultaneously reduce nitrate discharge from recirculating aquaculture system and ammonium release from sediments in receiving intensive aquaculture pond

Nitrogen accumulation has become one of the greatest unresolved challenges restricting the development of aquaculture worldwide. In recirculating aquaculture system (RAS), lack of organic matter (OM) and sensitive organisms makes it difficult to apply efficient denitrifying technology, thus leading to a high nitrate‑nitrogen (NO₃^--N) accumulation. In contrast, excess OM accumulation in intensive aquaculture pond sediments is associated with dissolved oxygen depletion and ammonium‑nitrogen (NH₄⁺-N) accumulation in the sediments. Based on the opposing effects of OM on the nitrogen accumulation in RAS and intensive aquaculture ponds, this study assessed the feasibility of simultaneously reducing NO₃^--N discharge from RAS and controlling NH₄⁺-N accumulation in intensive aquaculture ponds by in situ diffusing RAS tailwater containing NO₃^--N into intensive aquaculture pond sediments. The results showed that NO₃^--N diffusion strategy improved the native sediment denitrification capacity, thus increasing NO₃^--N removal efficiency from RAS tailwater and significantly decreasing the NH₄⁺-N concentration in interstitial water and the total organic carbon content in intensive aquaculture pond sediments. High-throughput sequencing and quantitative real-time polymerase chain reaction (qPCR) results revealed that NO₃^--N addition significantly increased both nitrifying bacteria and denitrifying bacteria abundance. These results implied that NO₃^--N diffusion strategy could effectively stimulate microbial decomposition of OM, thus relieving the hypoxia limitation of sediment nitrification. Overall, this study offers a feasible method for simultaneous reduction of NO₃^--N from RAS tailwater and NH₄⁺-N in intensive aquaculture ponds with low cost and high efficiency.

Differences in methane and nitrous oxide emissions and soil bacteria communities between straw return methods in central China

It is well recognized that straw return (SR) can improve soil fertility and soil organic carbon (SOC) storage. Increasing planting density and reducing nitrogen fertilizer application is considered an effective cultivation technique for japonica rice in central and northern China. However, few are known about the mechanisms of differences between wheat SR with rice planting densification and N reduction (SRD) and wheat SR on greenhouse gas emissions and soil bacteria communities in central China. A 2-year experiment was conducted to evaluate the effects of SR and SRD compared with straw removal (NS) on methane (CH₄) and nitrous oxide (N₂O) emission, rice yield, and soil properties in Henan Province, China, in 2019 and 2020. We found that SRD increased SOC, available phosphorous (AP), and available potassium (AK) compared to SR and NS in 2019 and 2020. The mean CH₄ flux was positively correlated with SOC, and the cumulative CH₄ emissions of SR and SRD plots were significantly higher than those of NS plots. No significant difference in cumulative CH₄ emissions was detected between the SR and SRD treatments. N₂O emissions were significantly lower under SRD than SR. SRD significantly affected soil bacteria diversity and composition at a depth of 0-15 cm. The relative abundance of Bacteroidota in SRD soil was 1.37- and 3.73-fold higher than that in NS and SR soils, respectively. The relative abundance of nitrate reduction-related operational taxonomic units enriched under SRD was significantly lower than that under SR, indicating that lower nitrate reduction of N₂O production was induced by soil bacteria under SRD. N partial factor productivity was 21.4% and 28.5% higher under SRD than SR in 2019 and 2020, respectively. Our results suggest that SRD decreased soil bacteria N₂O emissions; increased SOC, AP, and AK; and improved N fertilizer use efficiency, thereby improving rice yield in central China.

Impacts of humic-based products on the microbial community structure and functions toward sustainable agriculture

Humic-based products (HPs) are carbon-rich organic amendments in the forms of extracted humic substances from manure, compost, and raw and extracted forms of lignites, coals and peats. HPs are widely used in agriculture and have beneficial effects on plants. While the agronomic benefits of HPs have been widely reported, information on their impact on the soil microbial community composition and functions is lacking, despite claims made by companies of humic substances as biostimulants. In this review, we explored published research on microbial responses with HPs application in an agronomic context. Although research data are sparse, current results suggest indirect impacts of HPs on microbial community composition and activities. HPs application changes the physico-chemical properties of the soil and influence root exudation, which in turn impact the microbial structure and function of the soil and rhizosphere. Application of HPs to the soil as biostimulants seemed to favor plant/soil beneficial bacterial community composition. HPs impacts on microbial activities that influence soil biogeochemical functioning remain unclear; existing data are also inconsistent and contradictory. The structural properties of HPs caused inconsistencies in their reported impacts on soil properties and plants. The sources of HPs and forms (whether extracted or raw), soil type, geographic location, crop species, and management strategies, among others, affect microbial communities affecting HPs efficacy as biostimulants. A more holistic approach to research encompassing multiple influential factors and leveraging the next-generation sequencing technology is needed to unravel the impacts of HPs on the soil microbiome. Addressing these knowledge gaps facilitates sustainable and efficient use of HPs as organic agricultural amendments reducing the use of chemical fertilizers.

Effect of nitrification inhibitor (DMPP) on nitrous oxide emissions from agricultural fields: Automated and manual measurements

Nitrogen fertilisation contributes significantly to the atmospheric increase of nitrous oxide (N₂O). Application of nitrification inhibitors (NIs) is a promising strategy to mitigate N₂O emissions and improve N-use efficiency in agricultural systems. This study investigated the effect of NI, 3,4-dimethylpyrazol phosphate (DMPP) on N₂O mitigation from spring barley and spring oilseed rape. Manual and automatic chamber methodologies were used to capture spatial and temporal variability in N₂O emissions. In a second experiment, we study the effect of N fertiliser levels without NI (0 %, 50 %, 100 %, 150 % and 200 % of recommended amount of N fertiliser), as well as 100 % of N with NI on N₂O emissions in spring barley. The automated chamber measurements showed dynamics of N₂O changes throughout the season, including positive and negative peaks that were unobservable with manual chambers due to low temporal resolution. Although not significant, application of NI tended to reduce N₂O emissions. The reduction was on average 16 % in spring barley and 58 % in spring oilseed rape in manual chamber measurements. However, N₂O reduction was 108 % in continuous automatic chamber measurements in spring barley. The N₂O EFs for the growing season were very low (0.025 % to 0.148 %), with a greater reduction in EF in spring oilseed rape (76 %) than in spring barley (32 %) with NI application. A positive correlation (R = 80 %) was observed between N fertiliser levels and N₂O emissions. Crop yield and crop N uptake were not significantly affected by the use of NI. This study highlighted that NI can reduce N₂O emissions, but the reduction effects are plot, crop and microclimate specific. Long-term experiments with continuous plot-scale measurements are needed to capture and optimise N₂O mitigation effect of NIs across wide variability in soils and microclimates in agroecosystems.

Effect of nitrous oxide (N2O) on the structure and function of nitrogen-oxide reducing microbial communities

Nitrous oxide (N₂O) is a potent greenhouse gas that can be produced by nitrifying and denitrifying bacteria. Yet the effects of N₂O on microbial communities is not well understood. We used batch tests to explore the effects of N₂O on mixed denitrifying communities. Batch tests were carried out with acetate as the electron donor and with the following electron acceptors: nitrate (NO₃^-), nitrite (NO₂^-), N₂O, NO₃^- + N₂O, and NO₂^- + N₂O. Activated sludge from a municipal wastewater treatment plant was used as the inoculum. The bacteria grew readily with N₂O as the sole acceptor. When N₂O was provided along with NO₃^- or NO₂^-, it was used concurrently and resulted in higher growth rates than the same acceptors without added N₂O. The microbial communities resulting from N₂O addition were significantly different at the genus level from those with just NO₃^- or NO₂^-. Tests with N₂O as the sole added acceptor revealed a reduced diversity. Analysis of inferred gene content using PICRUSt2 indicated a greater abundance of genera with a complete denitrification pathway when growing on N₂O or NO₂^-, relative to all other tests. This suggests that specific N₂O reduction rates are high, and that N₂O alone selects for a low-diversity, fully denitrifying community. When N₂O is present with NO₂^- or NO₃^-, the microbial communities were more diverse and did not select exclusively for full denitrifiers. N₂O alone appears to select for a "generalist" community with full denitrification pathways and lower diversity. In terms of denitrification genes, the combination of acceptors with N₂O appeared to increase the number of microbes carrying nirK, while fully denitrifying bacteria appear more likely to carry nirS. Lastly, all the taxa in NO₂^- and N₂O samples were predicted to harbor nosZ. This suggests the potential for reduced N₂O emissions in denitrifying systems.

Application of iron and steel slags in mitigating greenhouse gas emissions: A review

The comprehensive consideration of climate warming and by-product management in the iron and steel industry, has a significant impact on the realization of environmental protection and green production. Blast furnace slag (BFS) and steel slag (SS), collectively called iron and steel slags, are the main by-products of steelmaking. The economical and efficient use of iron and steel slags to reduce greenhouse gas (GHG) emissions is an urgent problem to be solved. This paper reviewed the carbonization and waste heat recovery of iron and steel slags, and the utilization of iron and steel slags as soil amendments, discussed their application status and limitations in GHG reduction. Iron and steel slags are rich in CaO, which can be used as CO₂ adsorbents to achieve a maximum concentration of 0.4-0.5 kg CO₂/kg SS. Blast furnace molten slag contains a considerable amount of waste heat, and thermal methods can recover more than 60 % of the heat energy. Chemical methods can use waste heat in the reaction to generate gas fuel, and iron in slags can be used as a catalytic component to promote chemical reaction. Waste heat recovery saves fuel and reduces the CO₂ emissions caused by combustion. When iron and steel slags are used as soil amendments, the iron oxides, alkaline substances, and SiO₂ in iron and steel slags can affect the emission of CH₄, N₂O, and CO₂ from soil, microorganisms, and crops, and achieve a maximum reduction of more than 60 % of the overall GHG of paddy fields. Finally, This paper provided valuable suggestions for future GHG reduction studies of iron and steel slags in energy, industry, and agriculture.

Effect of inoculation with newly isolated thermotolerant ammonia-oxidizing bacteria on nitrogen conversion and microbial community during cattle manure composting

Nitrogen loss during composting is closely related to NH₄⁺-N conversion, and ammonia-oxidizing bacteria (AOB) are important microorganisms that promote NH₄⁺-N conversion. Since the biological activity of conventional AOB agents used for compost inoculation declines rapidly during the thermophilic phase of composting, new compound inoculants should be developed that are active during that phase. In the current study, the effects of inoculating cattle manure compost with newly isolated AOB (5%, v/w) [thermotolerant AOB X-2 strain (T-AOB-2), mesophilic AOB X-4 strain (M-AOB-4), and AOB X-2 combined with AOB X-4 (MT-AOB-2-4)] on the conversion of nitrogen, compost maturity, and the resident microbial community were studied. During 35 days of composting, compared with the control, AOB inoculation reduced NH₃ emissions by 29.98-46.94%, accelerated the conversion of NH₄⁺-N to NO₂^--N, increased seed germination values by 13.00-25.90%, and increased the abundance of the microbial community at the thermophilic phase (16.38-68.81%). Network analysis revealed that Bacillaceae play a crucial role in the composting process, with the correlation coefficients: 0.83 (p < 0.05) with NH₃, 0.64 (p < 0.05) with NH₄⁺-N, and 0.81 (p < 0.05) with NO₂^--N. In addition, inoculation with MT-AOB-2-4 notably increased the total nitrogen content of compost, prolonged the sanitation stage, and promoted compost maturity. Hence, MT-AOB-2-4 may be used to increase the microbial community abundance and improve the efficiency of cattle manure composting.

Rapid soil rewetting promotes limited N2O emissions and suppresses NH3 volatilization under urea addition

The alternation of dry and wet is an important environmental factor affecting the emission of nitrous oxide from soil. However, the consistent or opposite effects on NH₃ and N₂O emissions caused by adding exogenous urea in this process have not been fully considered. Here, we controlled the initial (slow drying) and final (adding water) water-filled pore space (WFPS) at 70%, 60%, or 50% through microculture experiment to simulate a process of slow drying-fertilization and rapid wetting of the soil from rice harvest to dryland crop fertilization. Through measuring soil chemical properties and the abundance and composition of related microbial communities during drying process, we studied the pathways of influence of drying and rewetting on the emission of N₂O and NH₃ after urea application. During the progressive drying process (WFPS decreasing from 70% to 60% and 50%), soil N₂O and NH₃ emissions decreased by 49.77%-72.13% and 17.89%-42.19%, respectively. After rapid rewetting (WFPS increasing from 60% to 70%, 50%-60% and 70%), N₂O emissions showed a slight increase, while NH₃ volatilization continued to decrease. Soil NH₄⁺-N and DOC contents both decreased during progressive drying, while the soil NO₃^--N content was enhanced. The drying process changed the community structure of ureC and amoA-b and reduced their abundance but had no effect on amoA-a, nirK or nirS. Correlation analysis indicated that the reductions in NH₄⁺-N content and the abundances of ureC and amoA-b were the main factors suppressing N₂O and NH₃ emissions. We believe that drying process limits the related microbial activity and substrate supply during ammonia oxidation process in terms of N₂O emissions, while in terms of NH₃ volatilization, it reduces the related microbial activity of urea hydrolysis process and increases the ammonium adsorption to the soil.

Responses of Soil N2O Emission and CH4 Uptake to N Input in Chinese Forests across Climatic Zones: A Meta-Study

Enhanced nitrogen (N) deposition has shown significant impacts on forest greenhouse gas emissions. Previous studies have suggested that Chinese forests may exhibit stronger N2O sources and dampened CH4 sinks under aggravated N saturation. To gain a common understanding of the N effects on forest N2O and CH4 fluxes, many have conducted global-scale meta-analyses. However, such effects have not been quantified particularly for China. Here, we present a meta-study of the N input effects on soil N2O emission and CH4 uptake in Chinese forests across climatic zones. The results suggest that enhanced N inputs significantly increase soil N2O emission (+115.8%) and decrease CH4 uptake (−13.4%). The mean effects were stronger for N2O emission and weaker for CH4 uptake in China compared with other global sites, despite being statistically insignificant. Subtropical forest soils have the highest emission factor (2.5%) and may respond rapidly to N inputs; in relatively N-limited temperate forests, N2O and CH4 fluxes are less sensitive to N inputs. Factors including forest type, N form and rate, as well as soil pH, may also govern the responses of N2O and CH4 fluxes. Our findings pinpoint the important role of Southern Chinese forests in the regional N2O and CH4 budgets.

Distribution of ammonia oxidizers and their role in N2 O emissions in the reservoir riparian zone

As a transitional boundary between terrestrial and aquatic ecosystems, the riparian zone is considered a hotspot for N₂ O production because of the active nitrogen processes. Ammoxidation is an important microbial pathway for N₂ O production, but the distribution of ammonia oxidizers under different land-use types in the reservoir riparian zone and what role they played in N₂ O emissions are still not clear. We investigated spatiotemporal distributions of ammonia-oxidizing archaea (AOA) and bacteria (AOB) and their role in N₂ O emissions in different land-use types along the riparian zone of Miyun Reservoir: grassland, sparse woods, and woodland. We found significant differences in both AOA abundance and AOB diversity indices among land-use types. AOA and AOB communities were significantly separated by different land-use types. The main drivers to determine the distribution of ammonia-oxidizing microbial community were soil water content, NH₄ ⁺ , NO₃ ^- , and total organic carbon (TOC). In situ N₂ O flux was highest in woodland with a mean value of 12.28 μg/m² ·h, and it was substantially decreased by 121% and 123% in sparse woods and grassland. TOC content was decreased by 20% and 40% in sparse woods and grassland compared with woodland, and it was significantly positively correlated with in situ N₂ O flux. Meanwhile, AOB diversity indices were significantly correlated with in situ N₂ O flux. These results showed that the heterogeneity of physicochemical properties among different land-use types affected the community of AOA and AOB in riparian zones. AOB not AOA, and community diversity rather than abundance, played a role in N₂ O emissions.

Soil carbon sequestration, greenhouse gas emissions, and water pollution under different tillage practices

Tillage is a common agricultural practice and a critical component of agricultural systems that is frequently employed worldwide in croplands to reduce climatic and soil restrictions while also sustaining various ecosystem services. Tillage can affect a variety of soil-mediated processes, e.g., soil carbon sequestration (SCS) or depletion, greenhouse gas (GHG) (CO₂, CH_4, and N₂O) emission, and water pollution. Several tillage practices are in vogue globally, and they exhibit varied impacts on these processes. Hence, there is a dire need to synthesize, collate and comprehensively present these interlinked phenomena to facilitate future researches. This study deals with the co-benefits and trade-offs produced by several tillage practices on SCS and related soil properties, GHG emissions, and water quality. We hypothesized that improved tillage practices could enable agriculture to contribute to SCS and mitigate GHG emissions and leaching of nutrients and pesticides. Based on our current understanding, we conclude that sustainable soil moisture level and soil temperature management is crucial under different tillage practices to offset leaching loss of soil stored nutrients/pesticides, GHG emissions and ensuring SCS. For instance, higher carbon dioxide (CO₂) and nitrous oxide (N₂O) emissions from conventional tillage (CT) and no-tillage (NT) could be attributed to the fluctuations in soil moisture and temperature regimes. In addition, NT may enhance nitrate (NO₃^-) leaching over CT because of improved soil structure, infiltration capacity, and greater water flux, however, suggesting that the eutrophication potential of NT is high. Our study indicates that the evaluation of the eutrophication potential of different tillage practices is still overlooked. Our study suggests that improving tillage practices in terms of mitigation of N₂O emission and preventing NO₃^- pollution may be sustainable if nitrification inhibitors are applied.

Different Forms and Proportions of Exogenous Nitrogen Promote the Growth of Alfalfa by Increasing Soil Enzyme Activity

Nitrogen fertilization is a simple and effective field management strategy for increasing plant productivity, but the regulatory mechanisms of nitrogen forms and proportions on soil nutrients and plant growth remain unclear. Therefore, we investigated soil enzyme activities and nutrient contents of alfalfa under different forms and proportions of exogenous nitrogen addition. Results showed that nitrogen input significantly increased the activity of three oxidoreductases (hydroxylamine reductase, nitrate reductase, and nitrite reductase) while having no significant effects on urease. A high proportion of ammonium nitrogen significantly increased neutral protease activity. The amylase activity markedly increased under mixed-nitrogen addition but decreased under single-nitrogen addition. Additionally, the contents of soil nutrients (soil organic matter, total nitrogen, nitrate nitrogen, ammonium nitrogen, available phosphorus, and available potassium) were significantly increased under different exogenous nitrogen inputs, which drove the changes in enzyme activities. Further, nitrogen addition also improved the biomass and nitrogen content of alfalfa. These findings indicated that applying different forms and proportions of exogenous nitrogen may stimulate soil enzyme activities, which will accelerate the transformation of nutrients and then promote alfalfa growth.

Contribution of Litter Layer to Greenhouse Gas Fluxes between Atmosphere and Soil Varies with Forest Succession

Surface litter layer strongly influences CO2, N2O, and CH4 fluxes (FCO2, FN2O, and FCH4) between the atmosphere and forest floor through litter decomposition (litter-internal, fL-L) or interactions between litter and mineral soil (litter-induced, fL-S). However, the relative contribution of fL-L or fL-S to these greenhouse gas (GHG) fluxes in forests at different succession stages remain unclear. We conducted a field experiment where surface litter was either removed (LR), left intact (CT), doubled (LD), or exchanged (LE) in a Masson pine forest (PF, early stage of succession) and an evergreen broadleaved forest (BF, climax of succession) at the Dinghushan Nature Reserve in southern China, and studied the responses of FCO2, FN2O, and FCH4 from August 2012 to July 2013. The results showed that both FCO2 and FN2O were increased by LD treatment with a greater increase in BF (41% for FCO2 and 30% for FN2O) and decreased by LR treatment with the greater decrease in PF (−61% for FCO2 and −58% for FN2O). LD treatment decreased FCH4 by 14% in PF and 6% in BF, and LR treatment increased FCH4 by 5% in PF and 18% in BF. fL-S contributed more to FCO2 (36%) and FN2O (45%) than fL-L in PF, whereas contributions of fL-L to FCO2 (41%) and FN2O (30%) were much bigger than fL-S in BF. The greater FCH4 in PF and BF resulted from the contributions of fL-L (−14%) and fL-S (−12%), respectively. Our results indicated that fL-L is the major source of GHG fluxes in BF, whereas fL-S dominates GHG fluxes in PF. The results provide a scientific reference for quantifying the contributions of fL-L and fL-S to GHG fluxes during the subtropical forest succession and should be considered in ecosystem models to predict global warming in the future.

Management Strategies to Mitigate N2O Emissions in Agriculture

The concentration of greenhouse gases (GHGs) in the atmosphere has been increasing since the beginning of the industrial revolution. Nitrous oxide (N2O) is one of the mightiest GHGs, and agriculture is one of the main sources of N2O emissions. In this paper, we reviewed the mechanisms triggering N2O emissions and the role of agricultural practices in their mitigation. The amount of N2O produced from the soil through the combined processes of nitrification and denitrification is profoundly influenced by temperature, moisture, carbon, nitrogen and oxygen contents. These factors can be manipulated to a significant extent through field management practices, influencing N2O emission. The relationships between N2O occurrence and factors regulating it are an important premise for devising mitigation strategies. Here, we evaluated various options in the literature and found that N2O emissions can be effectively reduced by intervening on time and through the method of N supply (30–40%, with peaks up to 80%), tillage and irrigation practices (both in non-univocal way), use of amendments, such as biochar and lime (up to 80%), use of slow-release fertilizers and/or nitrification inhibitors (up to 50%), plant treatment with arbuscular mycorrhizal fungi (up to 75%), appropriate crop rotations and schemes (up to 50%), and integrated nutrient management (in a non-univocal way). In conclusion, acting on N supply (fertilizer type, dose, time, method, etc.) is the most straightforward way to achieve significant N2O reductions without compromising crop yields. However, tuning the rest of crop management (tillage, irrigation, rotation, etc.) to principles of good agricultural practices is also advisable, as it can fetch significant N2O abatement vs. the risk of unexpected rise, which can be incurred by unwary management.

Effects of experimental fire in combination with climate warming on greenhouse gas fluxes in Arctic tundra soils

The frequency and severity of fire is increasing in Arctic tundra regions with climate change. Here we investigated effects of experimental low-intensity fire and shrub cutting, in combination with warming, on soil biogeochemical cycles and post-fire greenhouse gas (GHG) emissions in a dry heath tundra, West Greenland. We performed in vitro incubation experiments based on soil samples collected for up to two years after the fire. We observed tendency for increased soil nitrate (14-fold) and significant increases in soil ammonium and phosphate (four-fold and five-fold, respectively) two years after the fire, but no effects of shrub cutting on these compounds. Thus, changes appear to be largely due to fire effects rather than indirect effects by vegetation destruction. Two years after fire, nitrous oxide (N₂O) and carbon dioxide (CO₂) production was significantly increased (three-fold and 32% higher, respectively), in burned than unburned soils, while methane (CH₄) uptake remained unchanged. This stimulated N₂O and CO₂ production by the fire, however, was only apparent under conditions when soil was at maximum water holding capacity, suggesting that fire effects can be masked under dry conditions in this tundra ecosystem. There were positive effects by modest 2.5 °C warming on CO₂ production in control but not in burned soils, suggesting that fire may decrease the temperature response in soil respiration. Methane uptake was neither altered by the modest warming in shrub-cut nor in burned soils after two years, suggesting that the removal of vegetation may play a key role in controlling future temperature response of CH₄ oxidation. Altogether, our results show that post-fire tundra soils have the potential to enhance soil GHG emissions (e.g. N₂O and CO₂) especially during episodes with wet soil conditions. On the other hand, the lack of warming responses in post-fire soil respiration may weaken this positive feedback to climate change.

Soil respiration analysis using a mid-infrared quantum cascade laser and calibration-free WMS-based dual-gas sensor

A high response and sensitive dual-gas sensor based on calibration-free wavelength modulation spectroscopy (CF-WMS) has been developed for the simultaneous detection of carbon monoxide (CO) and nitrous oxide (N2O) to eliminate the detection errors caused by light intensity variations. A multi-pass cell (MPC) was employed to lengthen the optical path to improve the precision of the sensing system by combining with a 4.56 μm mid-infrared quantum cascade laser (MIR-QCL). Meanwhile, a LabVIEW-based bi-molecular iterative fitting algorithm was used to infer the respective abundances of each species. The performance of the completed system was accurately evaluated with precisions of 3.4 ppb for CO and 3.8 ppb for N2O at a 1 s averaging time, which could be improved to 0.48 ppb for CO and 0.53 ppb for N2O at an averaging time of 154 s and 278 s, respectively. The grassland soil respiration analysis of CO and N2O was performed under different moisture conditions, which indicated that dried soil samples appeared to be a significant source of CO, while the sinks of CO and the sources of N2O occurred in the moist soil samples. The maximum exchange rates of the two gases were exhibited in moderate moisture soil samples rather than in the over-wet or arid soil samples. Moreover, a possible positive relationship between the sinks of CO and sources of N2O was established to illustrate the correlation of the two species in soil respiration.

Influence of shrub willow buffers strategically integrated in an Illinois corn-soybean field on soil health and microbial community composition

Soil serves many important ecological functions and is an integral part of our existence as a society. However, concerns for soil health are growing globally, in part due to the negative impacts of agricultural management on soil resources. The production of perennial bioenergy crops on marginal land in row-crop production systems is one solution that could improve land-use efficiency and address the sustainability of cropland management. Because the relationship between crop management and the environment is complex, more research is needed to evaluate the potential benefits perennial bioenergy crop production has on soil health, as well as other ecosystem services. In this study, shrub willow buffers were strategically integrated into a corn-soybean cropping system with the main objective of reducing nitrate-N leaching from grain crop production while producing biomass for bioenergy. Two buffer systems (defined by landscape positions) were included for comparison, one on marginal land with exposure to nitrate-N leaching from upslope grain (southern plots) and one on fertile soils with less nitrate-N leaching potential (northern plots). Evaluation of soil (chemistry, bulk density, microbial community) and shrub willow vegetation properties (fine roots, leaf litter decomposition, and nutrient uptake dynamics), showed that landscape position plays an important role in (1) the dynamics of soil chemical properties, (2) shrub willow's influence and productivity, and (3) the provision of additional ecosystem services such as reductions in nitrous oxide emissions and nitrate-N leaching. In addition, the combination of crop type and landscape position (N-grain, N-willow, S-grain, and S-willow) influenced the species composition of the soil microbial community, resulting in unique and identifiable communities. These results highlight the potential application of shrub willow buffers for ecosystem service provision and support of ecosystem processes; however, understanding the relationship between the microbial community, crop type, and landscape is important for understanding the sustainability of the design.

Greenhouse gas emission from rice fields: a review from Indian context

Agricultural soil acts as a source and sink of important greenhouse gases (GHGs) like methane (CH4), nitrous oxide (N2O), and carbon dioxide (CO2). Rice paddies have been a major concern to scientific community, because they produce the threatening and long-lasting GHGs mainly CH4 and N2O. Around 30% and 11% of global agricultural CH4 and N2O, respectively, emitted from rice fields. Thus, it is urgent to concurrently quantify the fluxes of CH4 and N2O to improve understanding of both the gases from rice fields and to develop mitigation strategies for upcoming climate change reduction. An effort is being made in this review to discuss exclusively the emission of CH4 and N2O under normal and controlled conditions in different locations of India and also addresses the current synthesis of available data on how field and crop management activities influence CH4 and N2O emissions in rice fields. Making changes to conventional crop management regimes could have a significant impact on reducing GHG emissions from rice field. Environmental and agricultural factors related to soil could be easily altered by management practices. So, knowing the mechanism of CH4 and N2O production and release in the rice field and factors controlling the emissions is fundamental to develop well-organized strategies to reduce emissions from rice cultivated soil. This will help the regulatory bodies or policy makers to formulate adequate policies for agricultural farmers to refine the GHG emissions as well as minimize the global climate change.

Metagenomic Characterization of Soil Microbial Communities in the Luquillo Experimental Forest (Puerto Rico) and Implications for Nitrogen Cycling

The phylogenetic and functional diversities of microbial communities in tropical rainforests and how these differ from those of temperate communities remain poorly described but are directly related to the increased fluxes of greenhouse gases such as nitrous oxide (N₂O) from the tropics. Toward closing these knowledge gaps, we analyzed replicated shotgun metagenomes representing distinct life zones and an elevation gradient from four locations in the Luquillo Experimental Forest (LEF), Puerto Rico. These soils had a distinct microbial community composition and lower species diversity compared to those of temperate grasslands or agricultural soils. In contrast to the overall distinct community composition, the relative abundances and nucleotide sequences of N₂O reductases (nosZ) were highly similar between tropical forest and temperate soils. However, respiratory NO reductase (norB) was 2-fold more abundant in the tropical soils, which might be relatable to their greater N₂O emissions. Nitrogen fixation (nifH) also showed higher relative abundance in rainforest than in temperate soils, i.e., 20% versus 0.1 to 0.3% of bacterial genomes in each soil type harbored the gene, respectively. Finally, unlike temperate soils, LEF soils showed little stratification with depth in the first 0 to 30 cm, with ∼45% of community composition differences explained solely by location. Collectively, these results advance our understanding of spatial diversity and metabolic repertoire of tropical rainforest soil communities and should facilitate future ecological studies of these ecosystems. IMPORTANCE Tropical rainforests are the largest terrestrial sinks of atmospheric CO₂ and the largest natural source of N₂O emissions, two greenhouse gases that are critical for the climate. The microbial communities of rainforest soils that directly or indirectly, through affecting plant growth, contribute to these fluxes remain poorly described by cultured-independent methods. To close this knowledge gap, the present study applied shotgun metagenomics to samples selected from three distinct life zones within the Puerto Rico rainforest. The results advance our understanding of microbial community diversity in rainforest soils and should facilitate future studies of natural or manipulated perturbations of these critical ecosystems.

The Role of Biochar in Regulating the Carbon, Phosphorus, and Nitrogen Cycles Exemplified by Soil Systems

Biochar is a carbon-rich material prepared from the pyrolysis of biomass under various conditions. Recently, biochar drew great attention due to its promising potential in climate change mitigation, soil amendment, and environmental control. Obviously, biochar can be a beneficial soil amendment in several ways including preventing nutrients loss due to leaching, increasing N and P mineralization, and enabling the microbial mediation of N2O and CO2 emissions. However, there are also conflicting reports on biochar effects, such as water logging and weathering induced change of surface properties that ultimately affects microbial growth and soil fertility. Despite the voluminous reports on soil and biochar properties, few studies have systematically addressed the effects of biochar on the sequestration of carbon, nitrogen, and phosphorus in soils. Information on microbially-mediated transformation of carbon (C), nitrogen (N), and phosphorus (P) species in the soil environment remains relatively uncertain. A systematic documentation of how biochar influences the fate and transport of carbon, phosphorus, and nitrogen in soil is crucial to promoting biochar applications toward environmental sustainability. This report first provides an overview on the adsorption of carbon, phosphorus, and nitrogen species on biochar, particularly in soil systems. Then, the biochar-mediated transformation of organic species, and the transport of carbon, nitrogen, and phosphorus in soil systems are discussed. This review also reports on the weathering process of biochar and implications in the soil environment. Lastly, the current knowledge gaps and priority research directions for the biochar-amended systems in the future are assessed. This review focuses on literatures published in the past decade (2009–2021) on the adsorption, degradation, transport, weathering, and transformation of C, N, and P species in soil systems with respect to biochar applications.

Effects of Organic Fertilizers on the Soil Microorganisms Responsible for N2O Emissions: A Review

The use of organic fertilizers constitutes a sustainable strategy to recycle nutrients, increase soil carbon (C) stocks and mitigate climate change. Yet, this depends largely on balance between soil C sequestration and the emissions of the potent greenhouse gas nitrous oxide (N₂O). Organic fertilizers strongly influence the microbial processes leading to the release of N₂O. The magnitude and pattern of N₂O emissions are different from the emissions observed from inorganic fertilizers and difficult to predict, which hinders developing best management practices specific to organic fertilizers. Currently, we lack a comprehensive evaluation of the effects of OFs on the function and structure of the N cycling microbial communities. Focusing on animal manures, here we provide an overview of the effects of these organic fertilizers on the community structure and function of nitrifying and denitrifying microorganisms in upland soils. Unprocessed manure with high moisture, high available nitrogen (N) and C content can shift the structure of the microbial community, increasing the abundance and activity of nitrifying and denitrifying microorganisms. Processed manure, such as digestate, compost, vermicompost and biochar, can also stimulate nitrifying and denitrifying microorganisms, although the effects on the soil microbial community structure are different, and N₂O emissions are comparatively lower than raw manure. We propose a framework of best management practices to minimize the negative environmental impacts of organic fertilizers and maximize their benefits in improving soil health and sustaining food production systems. Long-term application of composted manure and the buildup of soil C stocks may contribute to N retention as microbial or stabilized organic N in the soil while increasing the abundance of denitrifying microorganisms and thus reduce the emissions of N₂O by favoring the completion of denitrification to produce dinitrogen gas. Future research using multi-omics approaches can be used to establish key biochemical pathways and microbial taxa responsible for N₂O production under organic fertilization.

Influence of rye cover cropping on denitrification potential and year-round field N2O emissions

Cover cropping is beneficial for reducing soil erosion and nutrient losses, but there are conflicting reports on how cover cropping affects emissions of nitrous oxide (N₂O), a potent greenhouse gas. In this study, we measured N₂O fluxes over a full year in Illinois corn plots with and without rye cover crop. We compared these year-round measurements to N₂O emissions predicted by the Intergovernmental Panel on Climate Change (IPCC) Tier 1 equation and the Denitrification-Decomposition (DNDC) model. In addition, we measured potential denitrification and N₂O production rates. The field measurements showed typical N₂O peaks shortly after fertilizer application, as well as a significant late-winter peak. Cover cropping significantly reduced all peak N₂O fluxes, with decreases ranging from 39 to 95%. Neither model was able to accurately predict annual N₂O fluxes or the decrease in N₂O emissions from cover-cropped fields. In contrast to field measurements, lab assays found that cover cropping significantly increased potential denitrification by 90-127% and potential N₂O production by 54-106%. The rye cover-cropped plots had lower soil nitrate and higher soil carbon. When limiting nitrate and excess carbon were provided in lab assays, the proportion of N₂O resulting from denitrification decreased. These results suggest that the discrepancy between the observed decrease in field N₂O emissions and the increase in denitrification potential may be due to the difference in available nutrients between the field and laboratory measurements. Overall, these results suggest the importance of late-winter peaks in N₂O emissions and the potential of rye cover cropping to reduce N₂O emissions from agricultural fields.

Burkholderiaceae Are Key Acetate Assimilators During Complete Denitrification in Acidic Cryoturbated Peat Circles of the Arctic Tundra

Cryoturbated peat circles (pH 4) in the Eastern European Tundra harbor up to 2 mM pore water nitrate and emit the greenhouse gas N₂O like heavily fertilized agricultural soils in temperate regions. The main process yielding N₂O under oxygen limited conditions is denitrification, which is the sequential reduction of nitrate/nitrite to N₂O and/or N₂. N₂O reduction to N₂ is impaired by pH < 6 in classical model denitrifiers and many environments. Key microbes of peat circles are important but largely unknown catalysts for C- and N-cycling associated N₂O fluxes. Thus, we hypothesized that the peat circle community includes hitherto unknown taxa and is essentially unable to efficiently perform complete denitrification, i.e., reduce N₂O, due to a low in situ pH. 16S rRNA analysis indicated a diverse active community primarily composed of the bacterial class-level taxa Alphaproteobacteria, Acidimicrobiia, Acidobacteria, Verrucomicrobiae, and Bacteroidia, as well as archaeal Nitrososphaeria. Euryarchaeota were not detected. ¹³C₂- and ¹²C₂-acetate supplemented anoxic microcosms with endogenous nitrate and acetylene at an in situ near pH of 4 were used to assess acetate dependent carbon flow, denitrification and N₂O production. Initial nitrate and acetate were consumed within 6 and 11 days, respectively, and primarily converted to CO₂ and N₂, suggesting complete acetate fueled denitrification at acidic pH. Stable isotope probing coupled to 16S rRNA analysis via Illumina MiSeq amplicon sequencing identified acetate consuming key players of the family Burkholderiaceae during complete denitrification correlating with Rhodanobacter spp. The archaeal community consisted primarily of ammonia-oxidizing Archaea of Nitrososphaeraceae, and was stable during the incubation. The collective data indicate that peat circles (i) host acid-tolerant denitrifiers capable of complete denitrification at pH 4-5.5, (ii) other parameters like carbon availability rather than pH are possible reasons for high N₂O emissions in situ, and (iii) Burkholderiaceae are responsive key acetate assimilators co-occurring with Rhodanobacter sp. during denitrification, suggesting both organisms being associated with acid-tolerant denitrification in peat circles.

Complete genome sequence of a denitrifying bacterium Halomonas sp. SS10-MC5 isolated from hydrothermal vent of Indian Ocean

A denitrifying bacterium Halomonas sp. SS10-MC5, was isolated from a deep-sea hydrothermal vent chimney sample of the Indian Ocean. Here we described the complete genome of strain SS10-MC5 which has one circular chromosome of 4,441,120 bp with a mean G + C content of 66.12 mol%. The complete genome harbors 4094 predicted protein-encoding genes, 65 tRNA genes as well as four 16S-23S-5S rRNA operons. Genes involved in denitrification, assimilation, PHA synthesis, stress response, and so on, were identified in this genome. These metabolic features and related genes revealed genetic basis for the adaptation to the marine environment, which help to further understand its adaptive evolution and ecological role in submarine hydrothermal environments.

Diverse Thaumarchaeota Dominate Subsurface Ammonia-oxidizing Communities in Semi-arid Floodplains in the Western United States

Subsurface microbial communities mediate biogeochemical transformations that drive both local and ecosystem-level cycling of essential elements, including nitrogen. However, their study has been largely limited to the deep ocean, terrestrial mines, caves, and topsoils (< 30 cm). Here, we present regional insights into the microbial ecology of aerobic ammonia oxidation within the terrestrial subsurface of five semi-arid riparian sites spanning a 900-km N-S transect. We sampled sediments, profiled communities to depths of ≤ 10 m, and compared them to reveal trends regionally within and surrounding the Upper Colorado River Basin (CRB). The diversity and abundance of ammonia-oxidizing microbial communities were evaluated in the context of subsurface geochemistry by applying a combination of amoA (encoding ammonia monooxygenase subunit A) gene sequencing, quantitative PCR, and geochemical techniques. Analysis of 898 amoA sequences from ammonia-oxidizing archaea (AOA) and bacteria (AOB) revealed extensive ecosystem-scale diversity, including archaeal amoA sequences from four of the five major AOA lineages currently found worldwide as well as distinct AOA ecotypes associated with naturally reduced zones (NRZs) and hydrogeochemical zones (unsaturated, capillary fringe, and saturated). Overall, AOA outnumber AOB by 2- to 5000-fold over this regional scale, suggesting that AOA may play a prominent biogeochemical role in nitrification within terrestrial subsurface sediments.

Comparison of Soil Greenhouse Gas Fluxes during the Spring Freeze–Thaw Period and the Growing Season in a Temperate Broadleaved Korean Pine Forest, Changbai Mountains, China

Soils in mid-high latitudes are under the great impact of freeze–thaw cycling. However, insufficient research on soil CO2, CH4, and N2O fluxes during the spring freeze–thaw (SFT) period has led to great uncertainties in estimating soil greenhouse gas (GHG) fluxes. The present study was conducted in a temperate broad-leaved Korean pine mixed forest in Northeastern China, where soils experience an apparent freeze–thaw effect in spring. The temporal variations and impact factors of soil GHG fluxes were measured during the SFT period and growing season (GS) using the static-chamber method. The results show that the soil acted as a source of atmospheric CO2 and N2O and a sink of atmospheric CH4 during the whole observation period. Soil CO2 emission and CH4 uptake were lower during the SFT period than those during the GS, whereas N2O emissions were more than six times higher during the SFT period than that during the GS. The responses of soil GHG fluxes to soil temperature (Ts) and soil moisture during the SFT and GS periods differed. During the SFT period, soil CO2 and CH4 fluxes were mainly affected by the volumetric water content (VWC) and Ts, respectively, whereas soil N2O flux was influenced jointly by Ts and VWC. The dominant controlling factor for CO2 was Ts during the GS, whereas CH4 and N2O were mainly regulated by VWC. Soil CO2 and N2O fluxes accounted for 97.3% and 3.1% of the total 100-year global warming potential (GWP100) respectively, with CH4 flux offsetting 0.4% of the total GWP100. The results highlight the importance of environmental variations to soil N2O pulse during the SFT period and the difference of soil GHG fluxes between the SFT and GS periods, which contribute to predicting the forest soil GHG fluxes and their global warming potential under global climate change.

Effects of inoculation with lignocellulose-degrading microorganisms on nitrogen conversion and denitrifying bacterial community during aerobic composting

The present study compared the effects of inoculation (WSD treatment) and non-inoculation (CK treatment) with lignocellulose-degrading microorganisms on nitrogen conversion, nitrogen functional genes, and the denitrifying bacterial community during aerobic composting, and their potential relations to NH₃ and N₂O emissions were also explored. Results showed that, WSD reduced the NH₃ and N₂O emissions by 25.9% and 34.98%, respectively, compared with CK. WSD also reduced the abundances of nitrifying (bacteria amoA) and denitrifying (nirS, nirK, and nosZ) genes during composting, which were significantly positively correlated with N₂O emissions (P < 0.01). The most important nosZ denitrifying microorganisms belonged to Proteobacteria. Redundancy analysis showed that environmental factors could affect the succession of the denitrifying bacterial community during composting. Based on these results, structural equation modeling demonstrated that the reduction in N₂O emissions under WSD was related to the lower accumulation of NO₃^--N utilized by denitrifying microorganisms during the compost maturation period.

Development of droplet digital PCR assays to quantify genes involved in nitrification and denitrification, comparison with quantitative real-time PCR and validation of assays in vineyard soil

Quantifying genes in soil is important to relate the abundance of soil bacteria to biogeochemical cycles. Quantitative real-time PCR is widely used for quantification, but its use with environmental samples is limited by poor reaction efficiencies or by PCR inhibition through co-purified soil substances. Droplet digital PCR (ddPCR) is a technology for absolute, sensitive quantification of genes. This study optimized eight ddPCR assays to quantify total bacteria and archaea as well as the nitrification (bacterial and archaeal amoA) and denitrification (nirS, nirK, nosZI, nosZII) genes involved in the generation or reduction of the greenhouse gas nitrous oxide. Detection and quantification thresholds were compared with those of quantitative real-time PCR and were equal to, or improved, in ddPCR. To validate the assays using environmental samples, soil DNA was isolated from two vineyards in the Okanagan valley in British Columbia, Canada, over the 2017 growing season. Soil properties related to the observed gene abundances were determined. Total bacteria, nirK, and nosZII increased with time and the soil C/N ratio and NH₄⁺-N concentration affected total archaea and archaeal amoA negatively. The results, compared with those of other studies, showed that ddPCR is a valid alternative to qPCR to quantify genes involved in nitrification or denitrification.

Bacterial and Fungal Community Dynamics and Shaping Factors During Agricultural Waste Composting with Zeolite and Biochar Addition

Bacterial and fungal communities play significant roles in waste biodegradation and nutrient reservation during composting. Biochar and zeolite were widely reported to directly or indirectly promote microbial growth. Therefore, the effects of zeolite and biochar on the abundance and structure of bacterial and fungal communities and their shaping factors during the composting of agricultural waste were studied. Four treatments were carried out as follows: Run A as the control without any addition, Run B with zeolite (5%), Run C with biochar (5%), and Run D with zeolite (5%) and biochar (5%), respectively. The bacterial and fungal community structures were detected by high-throughput sequencing. Redundancy analysis was used for determining the relationship between community structure and physico-chemical parameters. The results indicated that the addition of biochar and zeolite changed the physico-chemical parameters (e.g., pile temperature, pH, total organic matter, ammonium, nitrate, and water-soluble carbon) during the composting process. Zeolite and biochar significantly changed the structure and diversity of bacterial and fungal populations. Moreover, the bacterial community rather than the fungal community was sensitive to the biochar and zeolite addition during the composting process. Community phylogenetic characteristics showed that Nocardiopsaceae, Bacillaceae, Leuconostocaceae, Phyllobacteriaceae, and Xanthomonadaceae were the predominant bacterial species at the family-level. Chaetomiaceae and Trichocomaceae were the two most dominant fungal species. The pH, total organic matter, and nitrate were the most important factors affecting the bacterial and fungal population changes during the composting process.

Riparian land-use systems impact soil microbial communities and nitrous oxide emissions in an agro-ecosystem

Riparian buffer systems (RBS) are considered a best management practice (BMP) in agricultural landscapes to intercept soil nitrogen (N) and phosphorus (P) leaching and surface runoff into aquatic ecosystems. However, these environmental benefits could be offset by increased greenhouse gas (GHG) emissions, including nitrous oxide (N₂O). The main sources of N₂O in soil are linked to processes which are mediated by soil microbial communities. These microorganisms play crucial roles in N-cycling and in the reduction of nitrate to N₂, and N₂O gases. This study was conducted to determine the abundance and diversity of microbial communities and functional genes associated with N-cycling and their influence on N₂O emissions in different riparian land-use: undisturbed natural forest (UNF), rehabilitated site (RH), grass buffer (GRB), and an adjacent agricultural land (AGR). Soil was sampled concurrently with N₂O emissions on July 13, 2017. DNA was extracted and used to target key N-cycling genes for N-fixation (nifH), nitrification: (amoA), and denitrification (nirS, nirK, and nosZ) via quantitative PCR, and for high throughput sequencing of total bacterial and fungal communities. Non-metric multidimensional scaling (NMDS) was used to examine microbial community composition and indicated significant differences in bacterial (p < 0.001) and fungal (p < 0.0085) communities between sites. Bacterial abundance differed significantly (p = 0.0005) between RBS and AGR sites with the highest populations occurring in the UNF (2.1 × 10¹⁰ copies g^-1 dry soil), and lowest in AGR (5.3 × 10⁹ copies g^-1 dry soil). However, the AGR site had the highest ammonia-oxidizing bacteria (AOB) abundance, indicating that nitrification is highest at this site. The abundance of the nosZ gene was highest in RH and GRB demonstrating the capacity for complete denitrification at these sites, lowering measured N₂O. These results suggest N-cycling microbial community dynamics differ among RBS and are influencing N₂O emissions in the sites investigated.

Microbial and isotopomer analysis of N2O generation pathways in ammonia removal biofilters

Ammonia removal biofilters can be a potential source of nitrous oxide (N₂O) production as a result of microbial nitrification and denitrification. In this study, these two N₂O generation pathways was quantified using isotopic site preference values (SP, 33‰ for nitrification and 0‰ for denitrification) in a 204-d operation. Tests with two moisture conditions (45% and 55%) and three inlet NH₃ concentrations (35, 18 and 0 ppmv) were performed. A 55+% NH₃ removal efficiency was achieved in biofilters with 35 and 18 ppmv ammonia supply, but no significant difference (p > 0.05) was found between the moisture treatments. Results showed that biofilters were clearly net sources of N₂O, and biofilters with higher moisture content generated significantly (p < 0.05) higher N₂O concentration. The N₂O generation did not stop even after the biofilters were terminated. The percentage of inlet NH₃-N converted into N₂O-N were 5.2%, 8.5% for biofilters with 45% moisture content, and 14.8%, 10.8% for those with 55% moisture content. Gene abundance of amoA and nosZ in packing materials (taken on days 64, 107, 140, 180 and 204) increased due to NH₃ input reaching the highest on day 140 and then decreased in response to reduced NH₃ supply on day 180 and 204. The changes of SP values suggested a shift between nitrification and denitrification with regard to N₂O generation. Overall, the nitrification was the dominant pathway for N₂O generation, but uncertainty exits as well. This study confirmed that NH₃-loaded biofilters were net sources of N₂O, and use of SP-N₂O may be helpful in better understanding the processes responsible for such emissions.

Optimal biochar amendment rate reduced the yield-scaled N2O emissions from Ultisols in an intensive vegetable field in South China

Nitrous oxide (N₂O) emissions, vegetable yields, and soil microbial properties were studied in response to different rates of rice-straw biochar applied to an intensive vegetable soil (Ultisol) in South China. The study was conducted over a one-year period as a block-designed field experiment (n = 3) with two successive crops and five harvests in total. Biochar was applied at rates of 0, 10, 20, 30 and 40 Mg ha^-1 and splits of nitrogen (N) fertilizer were added in the form of urea (1010 kg N in total). References without biochar and N fertilization were included. Biochar significantly decreased the cumulative annual N₂O emissions by 34-67%, which concurred with decreased denitrification enzyme activity and increased nosZ gene abundance in the vegetable soil. The absolute N₂O mitigation increased with increasing flux rates, which were positively correlated to soil temperature and water-filled pore space. Conversely, weak increases of N₂O emissions were recurrently induced by biochar when the soil temperature was lower than 20 °C and the absolute fluxes were low. A significant 17-29% increase in vegetable yield was induced by biochar, which also ameliorated soil fertility by increasing the soil carbon content and the cation exchange capacity. Overall, biochar significantly decreased the yield-scaled N₂O emissions by 44-71% with the lowest yield-scaled N₂O emissions for the intermediate biochar application rate of 20 Mg ha^-1. Higher biochar application rates failed to further decrease the yield-scaled N₂O emissions, but rather caused weak increases. Based on the present results, a biochar application rate of 20 Mg ha^-1 combined with N fertilization seemed to be recommendable to achieve highest vegetable yield with lowest N₂O emissions in intensive vegetable production in South China.

Sward composition and soil moisture conditions affect nitrous oxide emissions and soil nitrogen dynamics following urea-nitrogen application

Increased emissions of N₂O, a potent greenhouse gas (GHG), from agricultural soils is a major concern for the sustainability of grassland agriculture. Emissions of N₂O are closely associated with the rates and forms of N fertilisers applied as well as prevailing weather and soil conditions. Evidence suggests that multispecies swards require less fertiliser N input, and may cycle N differently, thus reducing N loss to the environment. This study used a restricted simplex-centroid experimental design to investigate N₂O emissions and soil N cycling following application of urea-N (40 kg N ha^-1) to eight experimental swards (7.8 m²) with differing proportions of three plant functional groups (grass, legume, herb) represented by perennial ryegrass (PRG, Lolium perenne), white clover (WC, Trifolium repens) and ribwort plantain (PLAN, Plantago lanceolata), respectively. Swards were maintained under two contrasting soil moisture conditions to examine the balance between nitrification and denitrification. Two N₂O peaks coincided with fertiliser application and heavy rainfall events; 13.4 and 17.7 g N₂O-N ha^-1 day^-1 (ambient soil moisture) and 39.8 and 86.9 g N₂O-N ha^-1 day^-1 (wet soil moisture). Overall, cumulative N₂O emissions post-fertiliser application were higher under wet soil conditions. Increasing legume (WC) proportions from 0% to 60% in multispecies swards resulted in model predicted N₂O emissions increasing from 22.3 to 96.2 g N₂O-N ha^-1 (ambient soil conditions) and from 59.0 to 219.3 g N₂O-N ha^-1 (wet soil conditions), after a uniform N application rate. Soil N dynamics support denitrification as the dominant source of N₂O especially under wet soil conditions. Significant interactions of PRG or WC with PLAN on soil mineral N concentrations indicated that multispecies swards containing PLAN potentially inhibit nitrification and could be a useful mitigation strategy for N loss to the environment from grassland agriculture.

Effects of nitrogen deposition and litter layer management on soil CO2, N2O, and CH4 emissions in a subtropical pine forestland

Forestland soils play vital role in regulating global soil greenhouse gas (GHG) budgets, but the interactive effect of the litter layer management and simulated nitrogen (N) deposition on these GHG flux has not been elucidated clearly in subtropical forestland. A field trial was conducted to study these effects by using litter removal method under 0 and 40 kg N ha⁻¹ yr⁻¹ addition in a subtropical forestland in Yingtan, Jiangxi Province, China. Soil CO₂ emission was increased by N addition (18–24%) but decreased by litter removal (24–32%). Litter removal significantly (P < 0.05) decreased cumulative N₂O emission by 21% in treatments without N addition but only by 10% in treatments with 40 kg N ha⁻¹ yr⁻¹ addition. Moreover, litter-induced N₂O emission under elevated N deposition (0.094 kg N₂O-N ha⁻¹) was almost the same as without N addition (0.088 kg N₂O-N ha⁻¹). Diffusion of atmospheric CH₄ into soil was facilitated by litter removal, which increased CH₄ uptake by 55%. Given that the increasing trend of atmospheric N deposition in future, which would reduce litterfall in subtropical N-rich forest, the effect of surface litter layer change on soil GHG emissions should be considered in assessing forest GHG budgets and future climate scenario modeling.