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Miranda MP. Comparison of the effect of Sodium Chloride concentration on protein determination: Bradford and Biuret methods. Anal Biochem 2024; 687:115450. [PMID: 38159714 DOI: 10.1016/j.ab.2023.115450] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2023] [Revised: 12/12/2023] [Accepted: 12/23/2023] [Indexed: 01/03/2024]
Abstract
Protein quantification methods using spectrophotometry are widely used in laboratory routines for different purposes. Samples generally contain non-protein components that can interfere with the quality of the analysis. A simple and quick test with different concentrations of sodium chloride demonstrated that the Bradford method is significantly affected by the presence of salt, while Biuret remains stable. Therefore, the choice of method is an important factor in reducing errors and ensuring more reliable results.
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Affiliation(s)
- Matheus Pires Miranda
- Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Paraná, 81531-990, Curitiba, PR, Brazil.
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2
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Yan Y, Zhang M, Gao J, Qin L, Fu X, Wan J. Comparison of methods for detecting protein extracted from excess activated sludge. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023; 30:60967-60975. [PMID: 37042919 DOI: 10.1007/s11356-023-26455-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/13/2023] [Accepted: 03/10/2023] [Indexed: 05/10/2023]
Abstract
The protein contents of hydrolyzed sludge supernatant are commonly determined with the Kjeldahl method, but this method suffers from complicated operations, long process times, and large quantities of chemicals consumed. In this paper, the Lowry, bicinchoninic acid (BCA), and Bradford methods were used to test the precision and spiked recovery of proteins from sludge supernatants hydrolyzed by alkaline-thermal hydrolysis (ATH), enzymatic hydrolysis (EH), and ultrasound-assisted enzymatic hydrolysis (UEH), and the results were compared with those obtained with the Kjeldahl method. For all the hydrolytic processes, the sludge protein values determined with the three tested methods were within 0.05 of each other, which met the experimental requirement for accuracy. Both the Lowry and BCA methods had recovery rates of 95-105%, while the Bradford method showed large deviations and was not highly reliable. The three protein determination methods showed significant differences with the Kjeldahl method (P<0.05). However, the relative deviation between the Kjeldahl and BCA methods was the smallest (3-5%), followed by those between the Kjeldahl and the Lowry (11-21%) and Bradford methods (21-90%), and the causes of the deviations were analyzed based on the protein hydrolysate components and the mechanisms for the different detection methods. On the basis of these results, the BCA method was chosen as the most appropriate quantification method for use with sludge protein extraction, and it was used to analyze the protein contents extracted from residual sludge samples obtained from two sewage treatment plants. The reliability of the method was verified, and this lays a foundation for the extraction and reclamation of sludge proteins.
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Affiliation(s)
- Yixin Yan
- School of Ecology and Environment, Zhengzhou University, Zhengzhou, 450001, China
| | - Mengnan Zhang
- School of Ecology and Environment, Zhengzhou University, Zhengzhou, 450001, China
| | - Jianlei Gao
- School of Ecology and Environment, Zhengzhou University, Zhengzhou, 450001, China.
| | - Lei Qin
- School of Ecology and Environment, Zhengzhou University, Zhengzhou, 450001, China
| | - Xi Fu
- School of Ecology and Environment, Zhengzhou University, Zhengzhou, 450001, China
| | - Junfeng Wan
- School of Ecology and Environment, Zhengzhou University, Zhengzhou, 450001, China
- Henan International Joint Laboratory of Environment and Resources, Zhengzhou University, Zhengzhou, 450001, People's Republic of China
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Urrego-Pava F, Coy-Barrera E. Isoflavone Content and Nutritional-Related Properties of Debittered Seeds from Two Andean Lupin ( Lupinus mutabilis Sweet) Ecotypes Propagated in Two Soils. Foods 2023; 12:foods12091841. [PMID: 37174379 PMCID: PMC10178703 DOI: 10.3390/foods12091841] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2023] [Revised: 04/25/2023] [Accepted: 04/26/2023] [Indexed: 05/15/2023] Open
Abstract
Lupinus mutabilis Sweet is a fabaceous plant native to the Andean highlands and produces seeds with valuable nutritional properties. Thus, as part of our research on native emerging food, the present study aimed at determining some nutritional and functional-related features of seeds from two L. mutabilis ecotypes after propagation in two different substrates commonly found in the Bogotá plateau. Propagated plants produced seeds that, after conventional debittering, exhibited attractive contents of soluble protein (24-39 g/100 g dry seed powder (dsp)), phenolic (787-1003 g/100 g dsp), isoflavone (1-104 g/100 g dsp), and iron (5.3-6.4 g/100 g dsp), as well as antioxidant capacity (39-78 µM/100 g dsp). Higher pH, humidity saturation, organic matter, and total nitrogen of silty loam soil promoted isoflavone accumulation and better antioxidant capacity at pH 4-7, and no soil effect was observed for total phenolic and iron contents. The profiles based on isoflavone aglycones were also recorded by liquid chromatography-mass spectrometry, detecting eleven main compounds with mutabilein as the most abundant isoflavone (38.3-104.3 g/100 g dsp). Finally, a formulation was developed to fabricate an emulsion-type drink based on the debittered, pulverized L. mutabilis seeds, resulting in different emulsifying capacities (19-100%) depending on the biopolymer stabilizer, being xanthan gum the best additive. The findings revealed an attractive Andean lupin profile to be used as a raw food material.
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Affiliation(s)
- Francisco Urrego-Pava
- Bioorganic Chemistry Laboratory, Universidad Militar Nueva Granada, Cajicá 250247, Colombia
| | - Ericsson Coy-Barrera
- Bioorganic Chemistry Laboratory, Universidad Militar Nueva Granada, Cajicá 250247, Colombia
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Feng JY, Xie YQ, Zhang P, Zhou Q, Khan A, Zhou ZH, Xia XS, Liu L. Hepatoprotective Polysaccharides from Geranium wilfordii: Purification, Structural Characterization, and Their Mechanism. Molecules 2022; 27:molecules27113602. [PMID: 35684541 PMCID: PMC9182495 DOI: 10.3390/molecules27113602] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2022] [Revised: 05/25/2022] [Accepted: 06/01/2022] [Indexed: 12/10/2022] Open
Abstract
Traditional Chinese Medicine is generally used as a decoction to guard health. Many active ingredients in the decoction are chemical ingredients that are not usually paid attention to in phytochemical research, such as polysaccharides, etc. Based on research interest in Chinese herbal decoction, crude polysaccharides from G. wilfordii (GCP) were purified to obtain two relatively homogeneous polysaccharides, a neutral polysaccharide (GNP), and an acid polysaccharide (GAP) by various chromatographic separation methods, which were initially characterized by GC-MS, NMR, IR, and methylation analysis. Studies on the hepatoprotective activity of GCP in vivo showed that GCP might be a potential agent for the prevention and treatment of acute liver injury by inhibiting the secretion levels of ALT, AST, IL-6, IL-1β, TNF-α, and MDA expression levels, increasing SOD, and the GSH-Px activity value. Further, in vitro assays, GNP and GAP, decrease the inflammatory response by inhibiting the secretion of IL-6 and TNF-α, involved in the STAT1/T-bet signaling pathway.
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Affiliation(s)
- Jia-Yi Feng
- Yunnan Yunzhong Research Institute of Nutrition and Health, Yunnan University of Chinese Medicine, Kunming 650500, China; (J.-Y.F.); (Y.-Q.X.); (P.Z.); (Q.Z.); (Z.-H.Z.)
| | - Yan-Qing Xie
- Yunnan Yunzhong Research Institute of Nutrition and Health, Yunnan University of Chinese Medicine, Kunming 650500, China; (J.-Y.F.); (Y.-Q.X.); (P.Z.); (Q.Z.); (Z.-H.Z.)
| | - Peng Zhang
- Yunnan Yunzhong Research Institute of Nutrition and Health, Yunnan University of Chinese Medicine, Kunming 650500, China; (J.-Y.F.); (Y.-Q.X.); (P.Z.); (Q.Z.); (Z.-H.Z.)
| | - Qian Zhou
- Yunnan Yunzhong Research Institute of Nutrition and Health, Yunnan University of Chinese Medicine, Kunming 650500, China; (J.-Y.F.); (Y.-Q.X.); (P.Z.); (Q.Z.); (Z.-H.Z.)
| | - Afsar Khan
- Department of Chemistry, Abbottabad Campus, COMSATS University Islamabad, Abbottabad 22060, Pakistan;
| | - Zhi-Hong Zhou
- Yunnan Yunzhong Research Institute of Nutrition and Health, Yunnan University of Chinese Medicine, Kunming 650500, China; (J.-Y.F.); (Y.-Q.X.); (P.Z.); (Q.Z.); (Z.-H.Z.)
| | - Xian-Song Xia
- Yunnan Yunzhong Research Institute of Nutrition and Health, Yunnan University of Chinese Medicine, Kunming 650500, China; (J.-Y.F.); (Y.-Q.X.); (P.Z.); (Q.Z.); (Z.-H.Z.)
- Correspondence: (L.L.); (X.-S.X.)
| | - Lu Liu
- Yunnan Yunzhong Research Institute of Nutrition and Health, Yunnan University of Chinese Medicine, Kunming 650500, China; (J.-Y.F.); (Y.-Q.X.); (P.Z.); (Q.Z.); (Z.-H.Z.)
- Correspondence: (L.L.); (X.-S.X.)
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5
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Liang J, Quan Z, Zhu J, Gan M, Shen P. A functional promoter from the archaeon Halobacterium salinarum is also transcriptionally active in E. coli. BMC Microbiol 2022; 22:79. [PMID: 35331139 PMCID: PMC8943987 DOI: 10.1186/s12866-022-02489-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2021] [Accepted: 02/25/2022] [Indexed: 11/18/2022] Open
Abstract
Background Archaea form a third domain of life that is distinct from Bacteria and Eukarya. So far, many scholars have elucidated considerable details about the typical promoter architectures of the three domains of life. However, a functional promoter from the archaeon Halobacterium salinarum has never been studied in Escherichia coli. Results This paper found that the promoter of Halobacterium salinarum showed a promoter function in Escherichia coli. This Escherichia coli promoter structure contains − 10 box, -10 box extension and − 29 elements, however, no -35 box. The − 29 element is exercised by the TATA box in archaea. And we isolated the RM10 fragment that possessed the fusion characteristics of bacteria and archaea, which was overlapped with functionality of TATA box and − 29 elements. Conclusions The − 29 element reflects the evolutionary relationship between the archaeal promoter and the bacterial promoter. The result possibly indicated that there may be a certain internal connection between archaea and bacteria. We hypothesized that it provided a new viewpoint of the evolutionary relationship of archaea and other organisms. Supplementary Information The online version contains supplementary material available at 10.1186/s12866-022-02489-y.
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Affiliation(s)
- Jinye Liang
- Key laboratory of Biometallurgy, Ministry of Education, School of Minerals Processing and Bioengineering, Central South University, 410083, Changsha, China
| | - Zhenghui Quan
- College of Life Sciences, Wuhan University, 430000, Wuhan, China
| | - Jianyu Zhu
- Key laboratory of Biometallurgy, Ministry of Education, School of Minerals Processing and Bioengineering, Central South University, 410083, Changsha, China. .,College of Life Sciences, Wuhan University, 430000, Wuhan, China.
| | - Min Gan
- Key laboratory of Biometallurgy, Ministry of Education, School of Minerals Processing and Bioengineering, Central South University, 410083, Changsha, China.
| | - Ping Shen
- College of Life Sciences, Wuhan University, 430000, Wuhan, China.
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6
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Zhao L, Liu Q, Huang Q, Liu F, Liu H, Wang G. Isocitrate dehydrogenase of Bacillus cereus is involved in biofilm formation. World J Microbiol Biotechnol 2021; 37:207. [PMID: 34719734 DOI: 10.1007/s11274-021-03175-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2021] [Accepted: 10/19/2021] [Indexed: 11/25/2022]
Abstract
Isocitrate dehydrogenase (IDH), a key enzyme in the TCA cycle, participates in the formation of biofilms in Staphylococcus aureus, but it remains to be clarified whether it is involved in the formation of Bacillus cereus biofilms. In this study, we scanned the genome of B. cereus 0-9 and found a gene encoding isocitrate dehydrogenase (FRY47_22620) named icdH. The IcdH protein was expressed and purified. The enzyme activity assay showed that the protein had IDH activity dependent on NADP+, indicating that this gene encoded an IDH. The ΔicdH mutant and its complemented strains were obtained by a homologous recombination strategy, and crystal violet data and CLSM were measured. The results showed that the biofilm yield of the mutant ΔicdH decreased, and the biofilm morphology also changed, while the growth of ΔicdH was not affected. The extracellular pH and citric acid content results showed that the ΔicdH mutant exhibited citric acid accumulation and acidification of the extracellular matrix. In addition, the addition of excess Fe3+ restored the biofilm formation of the ΔicdH mutant. It is speculated that IDH in B. cereus may regulate biofilm formation by modulating intracellular redox homeostasis. In addition, we found that the icdH deletion of B. cereus 0-9 could result in a reduced sporulation rate, which was significantly different from sporulation in B. subtilis caused by interruption of the stage I sporulation process due to icdH loss. All the above results provide us with new insights for further research on IDH.
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Affiliation(s)
- Linlin Zhao
- Institute of Microbial Engineering, School of Life Science, Hennan Univeristy, Jinming Street, Kaifeng, 475004, Henan, People's Republic of China
| | - Qing Liu
- Institute of Microbial Engineering, School of Life Science, Hennan Univeristy, Jinming Street, Kaifeng, 475004, Henan, People's Republic of China
| | - Qiubin Huang
- Institute of Microbial Engineering, School of Life Science, Hennan Univeristy, Jinming Street, Kaifeng, 475004, Henan, People's Republic of China
- Engineering Research Center for Applied Microbiology, Hennan Province, Kaifeng, Hennan, 475004, People's Republic of China
| | - Fengying Liu
- Institute of Microbial Engineering, School of Life Science, Hennan Univeristy, Jinming Street, Kaifeng, 475004, Henan, People's Republic of China
- Engineering Research Center for Applied Microbiology, Hennan Province, Kaifeng, Hennan, 475004, People's Republic of China
| | - Huiping Liu
- Institute of Microbial Engineering, School of Life Science, Hennan Univeristy, Jinming Street, Kaifeng, 475004, Henan, People's Republic of China
| | - Gang Wang
- Institute of Microbial Engineering, School of Life Science, Hennan Univeristy, Jinming Street, Kaifeng, 475004, Henan, People's Republic of China.
- Engineering Research Center for Applied Microbiology, Hennan Province, Kaifeng, Hennan, 475004, People's Republic of China.
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Yan H, Cai F, Wang L, Chen C, Liu G. Compositional components and methane production potential of typical vegetable wastes. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:54177-54186. [PMID: 34402020 DOI: 10.1007/s11356-021-15798-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2021] [Accepted: 07/30/2021] [Indexed: 06/13/2023]
Abstract
With the development of agriculture, a huge amount of vegetable waste (VW) is produced every year, posing a large considerable environmental problem that cannot be ignored. Anaerobic digestion (AD), as an eco-friendly, efficient, and sustainable biomass conversion technology, may be used to address the pollution caused by VW. The compositional components of various VWs are different, which will affect their biomethane potential and directly determine whether they are suitable substrates for AD. Thus, this study involved a systematic analysis of the composition and biomethane potential of 20 typical VWs. The results showed that the methane yields of the VWs were different (207.5-346.3 mL/g VS) owing to the differences in composition. More importantly, a correlation between the contents of organic components and methane production was established, and then used to predict methane production by VW rapidly. In addition, first-order model, modified Gompertz, and Cone models were used to describe the biochemical methanogenesis mechanism of these VWs. The results of this study can provide a reference for fundamental research on the AD of VW as well as serve a convenient and precise method to predict methane production by different VWs through analyzing compositional components, which will be beneficial for pollution prevention and the comprehensive utilization of VW in the future.
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Affiliation(s)
- Hu Yan
- Biomass Energy and Environmental Engineering Research Center, College of Chemical Engineering, Beijing University of Chemical Technology, 505 Zonghe Building, 15 North 3rd Ring East Road, Beijing, 100029, China
| | - Fanfan Cai
- Biomass Energy and Environmental Engineering Research Center, College of Chemical Engineering, Beijing University of Chemical Technology, 505 Zonghe Building, 15 North 3rd Ring East Road, Beijing, 100029, China
| | - Ligong Wang
- Biomass Energy and Environmental Engineering Research Center, College of Chemical Engineering, Beijing University of Chemical Technology, 505 Zonghe Building, 15 North 3rd Ring East Road, Beijing, 100029, China
| | - Chang Chen
- Biomass Energy and Environmental Engineering Research Center, College of Chemical Engineering, Beijing University of Chemical Technology, 505 Zonghe Building, 15 North 3rd Ring East Road, Beijing, 100029, China.
| | - Guangqing Liu
- Biomass Energy and Environmental Engineering Research Center, College of Chemical Engineering, Beijing University of Chemical Technology, 505 Zonghe Building, 15 North 3rd Ring East Road, Beijing, 100029, China.
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8
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Microfluidic colorimetric detection platform with sliding hybrid PMMA/paper microchip for human urine and blood sample analysis. Talanta 2021; 231:122362. [PMID: 33965028 DOI: 10.1016/j.talanta.2021.122362] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2021] [Revised: 03/18/2021] [Accepted: 03/21/2021] [Indexed: 02/07/2023]
Abstract
A microfluidic colorimetric detection (MCD) platform consisting of a sliding hybrid PMMA/paper microchip and a smart analysis system is proposed for the convenient, low-cost and rapid analysis of human urine and whole blood samples. The sliding PMMA/paper microchip comprises a PMMA microfluidic chip for sample injection and transportation, a paper strip for sample filtration (urine) or separation (blood), and a sealed paper-chip detection zone for sample reaction and detection. In the proposed device, the paper-chip is coated with bicinchoninic acid (BCA) and biuret reagent and is then assembled into the PMMA microchip and packaged in aluminum housing. In the detection process, the PMMA/paper microchip is slid partially out of the housing, and 2 μL of sample (urine or whole blood) is dripped onto the sample injection zone. The chip is then slid back into the housing and the sample is filtered/separated by the paper strip and transferred under the effects of capillary action to the sealed paper-chip detection zone. The housing is inserted into the color analysis system and heated at 45 °C for 5 min to produce a purple-colored reaction complex. The complex is imaged using a CCD camera and the RGB color intensity of the image is then analyzed using a smartphone to determine the total protein (TP) concentration of the sample. The effectiveness of the proposed method is demonstrated using TP control samples with known concentrations in the range of 0.03-5.0 g/dL. The detection results obtained for 50 human urine samples obtained from random volunteers are shown to be consistent with those obtained from a conventional hospital analysis system (R2 = 0.992). Moreover, the detection results obtained for the albumin (ALB) and creatine (CRE) concentrations of 50 whole blood samples are also shown to be in good agreement with the results obtained from the hospital analysis system (R2 = 0.982 and 0.988, respectively).
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Guo H, Yu X, Liu Z, Li J, Ye J, Zha Z. Deltamethrin transformation by Bacillus thuringiensis and the associated metabolic pathways. ENVIRONMENT INTERNATIONAL 2020; 145:106167. [PMID: 33035892 DOI: 10.1016/j.envint.2020.106167] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/17/2020] [Revised: 09/08/2020] [Accepted: 09/25/2020] [Indexed: 05/22/2023]
Abstract
The biological toxicity of deltamethrin at molecular level has been investigated, whereas, the proteome responsive mechanisms of cells under deltamethrin stress at the phylogenetic level are not clear. The proteome expression, transformation-related pathway and regulatory network of Bacillus thuringiensis during the process of deltamethrin transformation were explored using proteomics and metabolomics approaches in the present study. The results showed that deltamethrin was effectively removed by B. thuringiensis within 48 h. The stress responses of B. thuringiensis were activated to resist deltamethrin stress, with significant differential expression of proteins that were primarily involved in the synthesis of DNA and shock proteins, endospore formation, carbon metabolism. The expression patterns of ribosomal proteins confirmed that the transcription and translation of DNA, and biosynthesis of heat shock proteins were inhibited as deltamethrin transformation. The synthesis of oxaloacetate and acetyl-CoA were also hindered, resulting in downregulated expression of carbohydrate metabolism, TCA cycle and energy metabolism. Meanwhile, endospore formation and germination were promoted to resist oxidative stress induced by deltamethrin. These findings imparted novel insight to elucidate underlying stress response mechanisms of the organism under target contaminants stress, and the interaction between deltamethrin transformation and cellular metabolism at the pathway and network levels.
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Affiliation(s)
- Huiying Guo
- Institute of Orthopedic Diseases and Department of Bone and Joint Surgery, The First Affiliated Hospital, Jinan University, Guangzhou 510630, China
| | - Xiaolong Yu
- Guangdong Provincial Key Laboratory of Petrochemical Pollution Processes and Control, School of Environmental Science and Engineering, Guangdong University of Petrochemical Technology, Maoming 525000, China
| | - Ziyi Liu
- Guangdong Key Laboratory of Environmental Pollution and Health, School of Environment, Jinan University, Guangzhou 510632, China
| | - Jieruo Li
- Institute of Orthopedic Diseases and Department of Bone and Joint Surgery, The First Affiliated Hospital, Jinan University, Guangzhou 510630, China
| | - Jinshao Ye
- Guangdong Key Laboratory of Environmental Pollution and Health, School of Environment, Jinan University, Guangzhou 510632, China.
| | - Zhengang Zha
- Institute of Orthopedic Diseases and Department of Bone and Joint Surgery, The First Affiliated Hospital, Jinan University, Guangzhou 510630, China.
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Bussamra BC, Meerman P, Viswanathan V, Mussatto SI, Carvalho da Costa A, van der Wielen L, Ottens M. Enzymatic Hydrolysis of Sugarcane Bagasse in Aqueous Two-Phase Systems (ATPS): Exploration and Conceptual Process Design. Front Chem 2020; 8:587. [PMID: 32850627 PMCID: PMC7411181 DOI: 10.3389/fchem.2020.00587] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2019] [Accepted: 06/08/2020] [Indexed: 11/13/2022] Open
Abstract
The enzymatic conversion of lignocellulosic material to sugars can provide a carbon source for the production of energy (fuels) and a wide range of renewable products. However, the efficiency of this conversion is impaired due to product (sugar) inhibition. Even though several studies investigate how to overcome this challenge, concepts on the process to conduct the hydrolysis are still scarce in literature. Aqueous two-phase systems (ATPS) can be applied to design an extractive reaction due to their capacity to partition solutes to different phases in such a system. This work presents strategies on how to conduct extractive enzymatic hydrolysis in ATPS and how to explore the experimental results in order to design a feasible process. While only a limited number of ATPS was explored, the methods and strategies described could easily be applied to any further ATPS to be explored. We studied two promising ATPS as a subset of a previously high throughput screened large set of ATPS, providing two configurations of processes having the reaction in either the top phase or in the bottom phase. Enzymatic hydrolysis in these ATPS was performed to evaluate the partitioning of the substrate and the influence of solute partitioning on conversion. Because ATPS are able to partition inhibitors (sugar) between the phases, the conversion rate can be maintained. However, phase forming components should be selected to preserve the enzymatic activity. The experimental results presented here contribute to a feasible ATPS-based conceptual process design for the enzymatic conversion of lignocellulosic material.
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Affiliation(s)
- Bianca Consorti Bussamra
- Department of Biotechnology, Delft University of Technology, Delft, Netherlands
- Development of Processes and Products (DDPP), University of Campinas, Campinas, Brazil
| | - Paulus Meerman
- Department of Biotechnology, Delft University of Technology, Delft, Netherlands
| | | | - Solange I. Mussatto
- Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kongens Lyngby, Denmark
| | | | - Luuk van der Wielen
- Department of Biotechnology, Delft University of Technology, Delft, Netherlands
- Bernal Institute, University of Limerick, Limerick, Ireland
| | - Marcel Ottens
- Department of Biotechnology, Delft University of Technology, Delft, Netherlands
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Li J, Zhao Y, Jiang X. Quantitative analysis of protein in thermosensitive hydroxypropyl chitin for biomedical applications. Anal Biochem 2020; 599:113745. [DOI: 10.1016/j.ab.2020.113745] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2020] [Revised: 04/06/2020] [Accepted: 04/15/2020] [Indexed: 12/19/2022]
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12
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Efficiency of granulocyte colony-stimulating factor immobilized on magnetic microparticles on proliferation of NFS-60 cells. Colloids Surf A Physicochem Eng Asp 2019. [DOI: 10.1016/j.colsurfa.2019.123580] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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13
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Meng X, Wang Z, Liang S, Tang Z, Liu J, Xin Y, Kuang H, Wang Q. Hepatoprotective effect of a polysaccharide from Radix Cyathulae officinalis Kuan against CCl4-induced acute liver injury in rat. Int J Biol Macromol 2019; 132:1057-1067. [DOI: 10.1016/j.ijbiomac.2019.04.018] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2018] [Revised: 03/25/2019] [Accepted: 04/03/2019] [Indexed: 02/08/2023]
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14
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Li Y, Li C, Qin H, Yang M, Ye J, Long Y, Ou H. Proteome and phospholipid alteration reveal metabolic network of Bacillus thuringiensis under triclosan stress. THE SCIENCE OF THE TOTAL ENVIRONMENT 2018; 615:508-516. [PMID: 28988086 DOI: 10.1016/j.scitotenv.2017.10.004] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2017] [Revised: 09/30/2017] [Accepted: 10/01/2017] [Indexed: 06/07/2023]
Abstract
Triclosan is a common antibacterial agent widely applied in various household and personal care products. The molecule, cell, organ and organism-level understanding of its toxicity pose to some target organisms has been investigated, whereas, the alteration of a single metabolic reaction, gene or protein cannot reflect the impact of triclosan on metabolic network. To clarify the interaction between triclosan stress and metabolism at network and system levels, phospholipid synthesis, and cellular proteome and metabolism of Bacillus thuringiensis under 1μM of triclosan stress were investigated through omics approaches. The results showed that C14:0, C16:1ω7, C16:0 and C18:2ω6 were significantly up-produced, and 19 proteins were differentially expressed. Whereas, energy supply, protein repair and the synthesis of DNA, RNA and protein were down-regulated. PyrH and Eno could be biomarkers to reflect triclosan stress. At network level, the target proteins ACOX1, AHR, CAR, CYP1A, CYP1B1, DNMT1, ENO, HSP60, HSP70, SLC5A5, TPO and UGT expressed in different species shared high sequence homology with the same function proteins found in Homo sapiens not only validated their role as biomarkers but also implied the potential impact of triclosan on the metabolic pathways and network of humans. These findings provided novel insights into the metabolic influence of triclosan at network levels, and developed an omics approach to evaluate the safety of target compound.
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Affiliation(s)
- Yi Li
- Key Laboratory of Environmental Exposure and Health of Guangdong Province, School of Environment, Jinan University, Guangzhou 510632, China
| | - Chongshu Li
- Key Laboratory of Environmental Exposure and Health of Guangdong Province, School of Environment, Jinan University, Guangzhou 510632, China
| | - Huaming Qin
- Key Laboratory of Environmental Exposure and Health of Guangdong Province, School of Environment, Jinan University, Guangzhou 510632, China
| | - Meng Yang
- Key Laboratory of Environmental Exposure and Health of Guangdong Province, School of Environment, Jinan University, Guangzhou 510632, China
| | - Jinshao Ye
- Key Laboratory of Environmental Exposure and Health of Guangdong Province, School of Environment, Jinan University, Guangzhou 510632, China; Joint Genome Institute, Lawrence Berkeley National Laboratory, Walnut Creek 94598, CA, USA.
| | - Yan Long
- Key Laboratory of Environmental Exposure and Health of Guangdong Province, School of Environment, Jinan University, Guangzhou 510632, China
| | - Huase Ou
- Key Laboratory of Environmental Exposure and Health of Guangdong Province, School of Environment, Jinan University, Guangzhou 510632, China
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15
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Yan H, Zhao C, Zhang J, Zhang R, Xue C, Liu G, Chen C. Study on biomethane production and biodegradability of different leafy vegetables in anaerobic digestion. AMB Express 2017; 7:27. [PMID: 28124289 PMCID: PMC5270615 DOI: 10.1186/s13568-017-0325-1] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2016] [Accepted: 01/04/2017] [Indexed: 11/15/2022] Open
Abstract
Enormous amounts of vegetable residues are wasted annually, causing
many environmental problems due to their high moisture and organic contents. In this
study, the methane production potential of 20 kinds of typical leafy vegetable
residues in China were explored using a unified method. A connection between the
biochemical components and the methane yields of these vegetables was well
established which could be used to predict biogas performance in practice. A high
volatile solid/total solid (VS/TS) ratio and hemicellulose content exhibited a
positive impact on the biogas yield while lignin had a negative impact. In addition,
three kinetic models were used to describe the methane production process of these
agro-wastes. The systematic comparison of the methane production potentials of these
leafy vegetables shown in this study will not only serve as a reference for basic
research on anaerobic digestion but also provide useful data and information for
agro-industrial applications of vegetable residues in future work.
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16
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Shen T, Li W, Pan W, Lin S, Zhu M, Yu L. Role of bacterial carbonic anhydrase during CO 2 capture in the CO 2 -H 2 O-carbonate system. Biochem Eng J 2017. [DOI: 10.1016/j.bej.2017.04.003] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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17
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Nicolás P, Lassalle VL, Ferreira ML. Quantification of immobilized Candida antarctica lipase B (CALB) using ICP-AES combined with Bradford method. Enzyme Microb Technol 2017; 97:97-103. [DOI: 10.1016/j.enzmictec.2016.11.009] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2016] [Revised: 11/17/2016] [Accepted: 11/22/2016] [Indexed: 12/16/2022]
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18
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Merlin M, Gecchele E, Arcalis E, Remelli S, Brozzetti A, Pezzotti M, Avesani L. Enhanced GAD65 production in plants using the MagnICON transient expression system: Optimization of upstream production and downstream processing. Biotechnol J 2016; 11:542-53. [PMID: 26710327 DOI: 10.1002/biot.201500187] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2015] [Revised: 09/09/2015] [Accepted: 12/18/2015] [Indexed: 12/11/2022]
Abstract
Plants have emerged as competitive production platforms for pharmaceutical proteins that are required in large quantities. One example is the 65-kDa isoform of human glutamic acid decarboxylase (GAD65), a major autoimmune diabetes autoantigen that has been developed as a vaccine candidate for the primary prevention of diabetes. The expression of GAD65 in plants has been optimized but large-scale purification is hampered by its tendency to associate with membranes. We investigated the potential for large-scale downstream processing by evaluating different combinations of plant-based expression systems and engineered forms of GAD65 in terms of yield, subcellular localization and solubility in detergent-free buffer. We found that a modified version of GAD65 lacking the first 87 amino acids accumulates to high levels in the cytosol and can be extracted in detergent-free buffer. The highest yields of this variant protein were achieved using the MagnICON transient expression system. This combination of truncated GAD65 and the MagnICON system dramatically boosts the production of the recombinant protein and helps to optimize downstream processing for the establishment of a sustainable plant-based production platform for an autoimmune diabetes vaccine candidate.
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Affiliation(s)
- Matilde Merlin
- Department of Biotechnology, University of Verona, Verona, Italy
| | - Elisa Gecchele
- Department of Biotechnology, University of Verona, Verona, Italy
| | - Elsa Arcalis
- Department of Applied Genetic and Cell Biology, University of Natural Resources and Life Science, Vienna, Austria
| | - Sabrina Remelli
- Department of Biotechnology, University of Verona, Verona, Italy
| | | | - Mario Pezzotti
- Department of Biotechnology, University of Verona, Verona, Italy
| | - Linda Avesani
- Department of Biotechnology, University of Verona, Verona, Italy.
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19
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Golunski SM, Sala L, Silva MF, Dallago RM, Mulinari J, Mossi AJ, Brandelli A, Kalil SJ, Di Luccio M, Treichel H. Interference of salts used on aqueous two-phase systems on the quantification of total proteins. Int J Biol Macromol 2016; 83:30-3. [DOI: 10.1016/j.ijbiomac.2015.11.056] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2015] [Revised: 11/19/2015] [Accepted: 11/20/2015] [Indexed: 11/29/2022]
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20
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Wang X, Bhadra CM, Yen Dang TH, Buividas R, Wang J, Crawford RJ, Ivanova EP, Juodkazis S. A bactericidal microfluidic device constructed using nano-textured black silicon. RSC Adv 2016. [DOI: 10.1039/c6ra03864f] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023] Open
Abstract
Nano-structured black silicon (bSi) was used as a substratum for the construction of a microfluidic device of the highly efficient bactericidal action of this nano-textured surface againstPseudomonas aeruginosabacteria.
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Affiliation(s)
- Xuewen Wang
- Faculty of Science, Engineering and Technology
- Swinburne University of Technology
- Australia
- Melbourne Centre for Nanofabrication (MCN)
- Australian National Fabrication Facility (ANFF)
| | - Chris M. Bhadra
- Faculty of Science, Engineering and Technology
- Swinburne University of Technology
- Australia
| | - Thi Hoang Yen Dang
- Faculty of Science, Engineering and Technology
- Swinburne University of Technology
- Australia
| | - Ričardas Buividas
- Faculty of Science, Engineering and Technology
- Swinburne University of Technology
- Australia
| | - James Wang
- Faculty of Science, Engineering and Technology
- Swinburne University of Technology
- Australia
| | - Russell J. Crawford
- Faculty of Science, Engineering and Technology
- Swinburne University of Technology
- Australia
| | - Elena P. Ivanova
- Faculty of Science, Engineering and Technology
- Swinburne University of Technology
- Australia
| | - Saulius Juodkazis
- Faculty of Science, Engineering and Technology
- Swinburne University of Technology
- Australia
- Melbourne Centre for Nanofabrication (MCN)
- Australian National Fabrication Facility (ANFF)
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21
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Baste JM, Gay A, Smail H, Noël R, Bubenheim M, Begueret H, Morin JP, Litzler PY. Organotypic lung culture: A new model for studying ischemia and ex vivo perfusion in lung transplantation. Exp Lung Res 2015; 41:564-75. [DOI: 10.3109/01902148.2015.1123328] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
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22
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Glyk A, Heinisch SL, Scheper T, Beutel S. Comparison of colorimetric methods for the quantification of model proteins in aqueous two-phase systems. Anal Biochem 2015; 477:35-7. [DOI: 10.1016/j.ab.2015.02.007] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2014] [Revised: 01/29/2015] [Accepted: 02/04/2015] [Indexed: 10/24/2022]
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23
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Schwienheer C, Merz J, Schembecker G. Selection and Use of Poly Ethylene Glycol and Phosphate Based Aqueous Two-Phase Systems for the Separation of Proteins by Centrifugal Partition Chromatography. J LIQ CHROMATOGR R T 2015. [DOI: 10.1080/10826076.2014.951765] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
Affiliation(s)
- Christoph Schwienheer
- Technische Universität Dortmund, Laboratory of Plant and Process Design, Dortmund, Germany
| | - Juliane Merz
- Technische Universität Dortmund, Laboratory of Plant and Process Design, Dortmund, Germany
| | - Gerhard Schembecker
- Technische Universität Dortmund, Laboratory of Plant and Process Design, Dortmund, Germany
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24
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Sapan CV, Lundblad RL. Review of methods for determination of total protein and peptide concentration in biological samples. Proteomics Clin Appl 2015; 9:268-76. [DOI: 10.1002/prca.201400088] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2014] [Revised: 01/08/2015] [Accepted: 01/27/2015] [Indexed: 11/06/2022]
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25
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Moreira S, Silvério SC, Macedo EA, Milagres AM, Teixeira JA, Mussatto SI. Recovery of Peniophora cinerea laccase using aqueous two-phase systems composed by ethylene oxide/propylene oxide copolymer and potassium phosphate salts. J Chromatogr A 2013; 1321:14-20. [DOI: 10.1016/j.chroma.2013.10.056] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2013] [Revised: 09/25/2013] [Accepted: 10/15/2013] [Indexed: 11/28/2022]
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26
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Superoxide dismutase1 levels in North Indian population with age-related macular degeneration. OXIDATIVE MEDICINE AND CELLULAR LONGEVITY 2013; 2013:365046. [PMID: 24363822 PMCID: PMC3864086 DOI: 10.1155/2013/365046] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/16/2013] [Revised: 10/20/2013] [Accepted: 10/28/2013] [Indexed: 12/21/2022]
Abstract
Aim. The aim of the study was to estimate the levels of superoxide dismutase1 (SOD1) in patients of age-related macular degeneration (AMD) and examine the role of oxidative stress, smoking, hypertension, and other factors involved in the pathogenesis of AMD. Methods. 115 AMD patients and 61 healthy controls were recruited for this study. Serum SOD1 levels were determined by ELISA and were correlated to various risk factors. Logistic regression model of authenticity, by considering SOD1 as independent variable, has been developed along with ROC curve. Results. The SOD1 levels were significantly higher in AMD patients as compared to those of the controls. The difference was not significant for wet and dry AMD. However, the difference was significant between wet AMD subtypes. Nonsignificance of the Hosmer-Lemeshow goodness of fit statistic (χ2 = 10.516, df = 8, P = 0.231) indicates the appropriateness of logistic regression model to predict AMD. Conclusion. Oxidative stress in AMD patients may mount compensatory response resulting in increased levels of SOD1 in AMD patients. To predict the risk of AMD on the basis of SOD1, a logistic regression model shows authenticity of 78%, and area under the ROC curve (0.827, P = .0001) with less standard error of 0.033 coupled with 95% confidence interval of 0.762–0.891 further validates the model.
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