A spatial model of socioeconomic and environmental determinants of dengue fever in Cali, Colombia

Zika emergence, persistence, and transmission rate in Colombia: a nationwide application of a space-time Markov switching model

Zika, a viral disease transmitted to humans by Aedes mosquitoes, emerged in the Americas in 2015, causing large-scale epidemics. Colombia alone reported over 72,000 Zika cases between 2015 and 2016. Using national surveillance data from 1121 municipalities over 70 weeks, we identified sociodemographic and environmental factors associated with Zika's emergence, re-emergence, persistence, and transmission intensity in Colombia. We fitted a zero-state Markov-switching model under the Bayesian framework, assuming Zika switched between periods of presence and absence according to spatially and temporally varying probabilities of emergence/re-emergence (from absence to presence) and persistence (from presence to presence). These probabilities were assumed to follow a series of mixed multiple logistic regressions. When Zika was present, assuming that the cases follow a negative binomial distribution, we estimated the transmission intensity rate. Our results indicate that Zika emerged/re-emerged sooner and that transmission was intensified in municipalities that were more densely populated, at lower altitudes and/or with less vegetation cover. Warmer temperatures and less weekly-accumulated rain were also associated with Zika emergence. Zika cases persisted for longer in more densely populated areas with more cases reported in the previous week. Overall, population density, elevation, and temperature were identified as the main contributors to the first Zika epidemic in Colombia. We also estimated the probability of Zika presence by municipality and week, and the results suggest that the disease circulated undetected by the surveillance system on many occasions. Our results offer insights into priority areas for public health interventions against emerging and re-emerging Aedes-borne diseases.

Spatial model of Dengue Hemorrhagic Fever (DHF) risk: scoping review

BACKGROUND

Creating a spatial model of dengue fever risk is challenging duet to many interrelated factors that could affect dengue. Therefore, it is crucial to understand how these critical factors interact and to create reliable predictive models that can be used to mitigate and control the spread of dengue.

METHODS

This scoping review aims to provide a comprehensive overview of the important predictors, and spatial modelling tools capable of producing Dengue Haemorrhagic Fever (DHF) risk maps. We conducted a methodical exploration utilizing diverse sources, i.e., PubMed, Scopus, Science Direct, and Google Scholar. The following data were extracted from articles published between January 2011 to August 2022: country, region, administrative level, type of scale, spatial model, dengue data use, and categories of predictors. Applying the eligibility criteria, 45 out of 1,349 articles were selected.

RESULTS

A variety of models and techniques were used to identify DHF risk areas with an arrangement of various multiple-criteria decision-making, statistical, and machine learning technique. We found that there was no pattern of predictor use associated with particular approaches. Instead, a wide range of predictors was used to create the DHF risk maps. These predictors may include climatology factors (e.g., temperature, rainfall, humidity), epidemiological factors (population, demographics, socio-economic, previous DHF cases), environmental factors (land-use, elevation), and relevant factors.

CONCLUSIONS

DHF risk spatial models are useful tools for detecting high-risk locations and driving proactive public health initiatives. Relying on geographical and environmental elements, these models ignored the impact of human behaviour and social dynamics. To improve the prediction accuracy, there is a need for a more comprehensive approach to understand DHF transmission dynamics.

Flexible Resources Key to Neighborhood Resilience for Children: A Scoping Review

Neighborhoods have been the focus of health researchers seeking to develop upstream strategies to mitigate downstream disease development. In recent years, neighborhoods have become a primary target in efforts to promote health and resilience following deleterious social conditions such as the climate crisis, extreme weather events, the global pandemic, and supply chain disruptions. Children are often the most vulnerable populations after experiencing unexpected shocks. To examine and describe conceptually the construct of Neighborhood Resilience, we conducted a comprehensive scoping review using the terms ("resilience" or "resiliency" or "resilient") AND ("neighborhood"), utilizing MEDLINE (through PubMed) and CINAHL (through EBSCOhost) databases, to assess overall neighborhood themes that impact resilience. A total of 57 articles were extracted that met inclusion criteria. Extracted characteristics included study purpose, country of origin, key findings, environmental protective/risk factors. The analysis revealed a positive relationship between neighborhood resource density, neighborhood resiliency, and individual resiliency. This study reports the finding for studies with a population focus of pre-school age and school age children (1.5-18 years of age). Broadly, we identified that the primary goals regarding neighborhood resilience for childhood can be conceptualized as all activities and resources that (a) prevent trauma during childhood development and/or (b) mitigate or heal childhood trauma once it has occurred. This goal conceptually encompasses antecedents that increase protective factors and reduces risk factors for children and their families. This comprehensive look at the literature showed that a neighborhood's ability to build, promote, and maintain resiliency is often largely dependent on the flexible resources (i.e., knowledge, money, power, prestige, and beneficial social connections) that are available.

A systematic review of the data, methods and environmental covariates used to map Aedes-borne arbovirus transmission risk

BACKGROUND

Aedes (Stegomyia)-borne diseases are an expanding global threat, but gaps in surveillance make comprehensive and comparable risk assessments challenging. Geostatistical models combine data from multiple locations and use links with environmental and socioeconomic factors to make predictive risk maps. Here we systematically review past approaches to map risk for different Aedes-borne arboviruses from local to global scales, identifying differences and similarities in the data types, covariates, and modelling approaches used.

METHODS

We searched on-line databases for predictive risk mapping studies for dengue, Zika, chikungunya, and yellow fever with no geographical or date restrictions. We included studies that needed to parameterise or fit their model to real-world epidemiological data and make predictions to new spatial locations of some measure of population-level risk of viral transmission (e.g. incidence, occurrence, suitability, etc.).

RESULTS

We found a growing number of arbovirus risk mapping studies across all endemic regions and arboviral diseases, with a total of 176 papers published 2002-2022 with the largest increases shortly following major epidemics. Three dominant use cases emerged: (i) global maps to identify limits of transmission, estimate burden and assess impacts of future global change, (ii) regional models used to predict the spread of major epidemics between countries and (iii) national and sub-national models that use local datasets to better understand transmission dynamics to improve outbreak detection and response. Temperature and rainfall were the most popular choice of covariates (included in 50% and 40% of studies respectively) but variables such as human mobility are increasingly being included. Surprisingly, few studies (22%, 31/144) robustly tested combinations of covariates from different domains (e.g. climatic, sociodemographic, ecological, etc.) and only 49% of studies assessed predictive performance via out-of-sample validation procedures.

CONCLUSIONS

Here we show that approaches to map risk for different arboviruses have diversified in response to changing use cases, epidemiology and data availability. We identify key differences in mapping approaches between different arboviral diseases, discuss future research needs and outline specific recommendations for future arbovirus mapping.

Mapping the risk of respiratory infections using suburban district areas in a large city in Colombia

BACKGROUND

Acute respiratory infections (ARI) in Cúcuta -Colombia, have a comparatively high burden of disease associated with high public health costs. However, little is known about the epidemiology of these diseases in the city and its distribution within suburban areas. This study addresses this gap by estimating and mapping the risk of ARI in Cúcuta and identifying the most relevant risk factors.

METHODS

A spatial epidemiological analysis was designed to investigate the association of sociodemographic and environmental risk factors with the rate of ambulatory consultations of ARI in urban sections of Cúcuta, 2018. The ARI rate was calculated using a method for spatial estimation of disease rates. A Bayesian spatial model was implemented using the Integrated Nested Laplace Approximation approach and the Besag-York-Mollié specification. The risk of ARI per urban section and the hotspots of higher risk were also estimated and mapped.

RESULTS

A higher risk of IRA was found in central, south, north and west areas of Cúcuta after adjusting for sociodemographic and environmental factors, and taking into consideration the spatial distribution of the city's urban sections. An increase of one unit in the percentage of population younger than 15 years; the Index of Multidimensional Poverty and the rate of ARI in the migrant population was associated with a 1.08 (1.06-1.1); 1.04 (1.01-1.08) and 1.25 (1.22-1.27) increase of the ARI rate, respectively. Twenty-four urban sections were identified as hotspots of risk in central, south, north and west areas in Cucuta.

CONCLUSION

Sociodemographic factors and their spatial patterns are determinants of acute respiratory infections in Cúcuta. Bayesian spatial hierarchical models can be used to estimate and map the risk of these infections in suburban areas of large cities in Colombia. The methods of this study can be used globally to identify suburban areas and or specific communities at risk to support the implementation of prevention strategies and decision-making in the public and private health sectors.

Space-time cluster detection techniques for infectious diseases: A systematic review

BACKGROUND

Public health organizations have increasingly harnessed geospatial technologies for disease surveillance, health services allocation, and targeting place-based health promotion initiatives.

METHODS

We conducted a systematic review around the theme of space-time clustering detection techniques for infectious diseases using PubMed, Web of Science, and Scopus. Two reviewers independently determined inclusion and exclusion.

RESULTS

Of 2,887 articles identified, 354 studies met inclusion criteria, the majority of which were application papers. Studies of airborne diseases were dominant, followed by vector-borne diseases. Most research used aggregated data instead of point data, and a significant proportion of articles used a repetition of a spatial clustering method, instead of using a "true" space-time detection approach, potentially leading to the detection of false positives. Noticeably, most articles did not make their data available, limiting replicability.

CONCLUSION

This review underlines recent trends in the application of space-time clustering methods to the field of infectious disease, with a rapid increase during the COVID-19 pandemic.

Combining environmental and socioeconomic data to understand determinants of conflicts in Colombia

Conflicts cause immense human suffering, violate human rights, and affect people's stability. Colombia is affected for decades by a high level of armed conflicts and violence. The political and socio-economic situation, drug trafficking in the Colombian economy, and natural disasters events affect the country and foster general violence. In this work, we aim to evaluate the role of the socioeconomic, political, financial, and environmental determinants of conflicts in the Colombian context. To achieve these aims, we apply a spatial analysis to explore patterns and identify areas that suffer from high levels of conflict. We investigate the role of determinants and their relationship with conflicts through spatial regression models. In this study, we do not consider only the entire Colombian territory, but we extend the analysis to a restricted area (Norte de Santander department) to explore the phenomena locally. Our findings indicate a possible diffusion process of conflicts and the presence of spillover effects among regions by comparing the two most known spatial regression models. As regards possible key drivers of conflicts, our results show that surprisingly socioeconomic variables present very little relationship with conflicts, while natural disasters and cocaine areas show a relevant impact on them. Despite some variables seeming to be the more informative to explain the process globally, they highlight a strong relationship for only a few specific areas while considering a local analysis. This result proves the importance of moving to a local investigation to strengthen our understanding and bring out additional interesting information. Our work emphasizes how the identification of key drivers of violence is crucial to have evidence to inform subnational governments and to support the decision-making policies that could assess targeted policy options.

Real world data study of prevalence and direct costs related to dengue management in Brazil's private healthcare from 2015 to 2020

BACKGROUND

The burden of dengue in Brazil is poorly documented and is based on data from the public health care setting. This study estimated the prevalence and costs of dengue management in the private health care system in Brazil from 2015 to 2020 using a large claims database from Orizon.

METHODS

We selected claims with dengue ICD codes (ICD-10 A90 or A91) from January 2015 to December 2020. Prevalence was estimated based on the population enrolled in health insurance plans in the given year. Costs were adjusted for the inflation up to December 2021 and evaluated by measures of central tendency and dispersion.

RESULTS

A total of 63,882 unique beneficiaries were included, with a total of 64,186 dengue cases. The year with the highest prevalence was 2015 (1.6% of patients who used health plans), and there was also an increase in cases in 2016 and 2019. The median cost per hospitalization in 2015 was US$486.17, and in 2020, it reached US$696.72. The median cost of a case seen at an emergency room ranged from US$ 97.78 in 2015 to US$ 118.16 in 2017.

CONCLUSIONS

The estimated prevalence of dengue in this population of private health-insured patients followed the epidemiological trends of the general population in Brazil, with the highest rates in 2015, 2016, and 2019. The cost of dengue management has increased in the private health care setting over the years.

Spatio-temporal clusters and patterns of spread of dengue, chikungunya, and Zika in Colombia

Background

Colombia has one of the highest burdens of arboviruses in South America. The country was in a state of hyperendemicity between 2014 and 2016, with co-circulation of several Aedes-borne viruses, including a syndemic of dengue, chikungunya, and Zika in 2015.

Methodology/Principal findings

We analyzed the cases of dengue, chikungunya, and Zika notified in Colombia from January 2014 to December 2018 by municipality and week. The trajectory and velocity of spread was studied using trend surface analysis, and spatio-temporal high-risk clusters for each disease in separate and for the three diseases simultaneously (multivariate) were identified using Kulldorff’s scan statistics. During the study period, there were 366,628, 77,345 and 74,793 cases of dengue, chikungunya, and Zika, respectively, in Colombia. The spread patterns for chikungunya and Zika were similar, although Zika’s spread was accelerated. Both chikungunya and Zika mainly spread from the regions on the Atlantic coast and the south-west to the rest of the country. We identified 21, 16, and 13 spatio-temporal clusters of dengue, chikungunya and Zika, respectively, and, from the multivariate analysis, 20 spatio-temporal clusters, among which 7 were simultaneous for the three diseases. For all disease-specific analyses and the multivariate analysis, the most-likely cluster was identified in the south-western region of Colombia, including the Valle del Cauca department.

Conclusions/Significance

The results further our understanding of emerging Aedes-borne diseases in Colombia by providing useful evidence on their potential site of entry and spread trajectory within the country, and identifying spatio-temporal disease-specific and multivariate high-risk clusters of dengue, chikungunya, and Zika, information that can be used to target interventions.

Dengue, chikungunya, and Zika are diseases transmitted to humans by the bite of infected Aedes mosquitoes. Between 2014 and 2016 chikungunya and Zika viruses started causing outbreaks in Colombia, one of the countries historically most affected by dengue. We used case counts of the diseases by municipality and week to study the spread trajectory of chikungunya and Zika within Colombia’s territory, and to identify space-time high-risk clusters, i.e., the areas and time periods that dengue, chikungunya, and Zika were more present. Chikungunya and Zika spread similarly in Colombia, but Zika spread faster. The Atlantic coast, a famous touristic destination in the country, was likely the place of entry of chikungunya and Zika in Colombia. The south-western region was identified as a high-risk cluster for all three diseases in separate and simultaneously. This region has a favorable climate for the Aedes mosquitoes and other characteristics that facilitate the diseases’ transmission, such as social deprivation and high population mobility. Our results provide useful information on the locations that should be prioritized for interventions to prevent the entry of new diseases transmitted by Aedes and to reduce the burden of dengue, chikungunya and Zika where they are established.

Spatial analysis of cardiovascular mortality and associated factors around the world

BACKGROUND

Cardiovascular disease (CVD) is one of the most serious health issues and the leading cause of death worldwide in both developed and developing countries. The risk factors for CVD include demographic, socioeconomic, behavioral, environmental, and physiological factors. However, the spatial distribution of these risk factors, as well as CVD mortality, are not uniformly distributed across countries. Therefore, the goal of this study is to compare and evaluate some models commonly used in mortality and health studies to investigate whether the CVD mortality rates in the adult population (over 30 years of age) of a country are associated with the characteristics of surrounding countries from 2013 to 2017.

METHODS

We present the spatial distribution of the age-standardized crude mortality rate from cardiovascular disease, as well as conduct an exploratory data analysis (EDA) to obtain a basic understanding of the behavior of the variables of interest. Then, we apply the ordinary least squares (OLS) to the country level dataset. As OLS does not take into account the spatial dependence of the data, we apply two spatial modelling techniques, that is, spatial lag and spatial error models.

RESULTS

Our empirical findings show that the relationship between CVD and income, as well as other socioeconomic variables, are important. In addition, we highlight the importance of understanding how changes in individual behavior across different countries might affect future trends in CVD mortality, especially related to smoking and dietary behaviors.

CONCLUSIONS

We argue that this study provides useful clues for policymakers establishing effective public health planning and measures for the prevention of deaths from cardiovascular disease. The reduction of CVD mortality can positively impact GDP growth because increasing life expectancy enables people to contribute to the economy of the country and its regions for longer.

Explaining Neighbourhood Variations in the Incidence of Dengue Fever in Jeddah City, Saudi Arabia

The rapid growth and development of cities is a contributing factor to the rise and persistence of dengue fever (DF) in many areas around the world. Many studies have examined how neighbourhood environmental conditions contribute to dengue fever and its spread, but have not paid enough attention to links between socio-economic conditions and other factors, including population composition, population density, the presence of migrant groups, and neighbourhood environmental conditions. This study examines DF and its distribution across 56 neighbourhoods of Jeddah City, Saudi Arabia, where the incidence of dengue remains high. Using stepwise multiple regression analysis it focuses on the key ecological correlates of DF from 2006-2009, the years of the initial outbreak. Neighbourhood variations in average case rates per 10,000 population (2006-2009) were largely predicted by the Saudi gender ratio and socio-economic status (SES), the respective beta coefficients being 0.56 and 0.32 (p < 0.001). Overall, 77.1% of cases occurred in the poorest neighbourhoods. SES effects, however, are complex and were partly mediated by neighbourhood population density and the presence of migrant groups. SES effects persisted after controls for both factors, suggesting the effect of other structural factors and reflecting a lack of DF awareness and the lack of vector control strategies in poorer neighbourhoods. Neighbourhood environmental conditions, as measured by the presence of surface water, were not significant. It is suggested that future research pay more attention to the different pathways that link neighbourhood social status to dengue and wider health outcomes.

Missing data estimation in extreme rainfall indices for the Metropolitan area of Cali - Colombia: An approach based on artificial neural networks

Changes observed in the current climate and projected for the future significantly concern researchers, decision-makers, and the general public. Climate indices of extreme rainfall events are a trend assessment tool to detect climate variability and change signals, which have an average reliability at least in the short term and given climatic inertia. This paper shows 12 climate indices of extreme rainfall events for annual and seasonal scales for 12 climate stations between 1969 to 2019 in the Metropolitan area of Cali (southwestern Colombia). The construction of the indices starts from daily rainfall time series, which although have between 0.5% and 5.4% of missing data, can affect the estimation of the indices. Here, we propose a methodology to complete missing data of the extreme event indices that model the peaks in the time series. This methodology uses an artificial neural network approach known as Non-Linear Principal Component Analysis (NLPCA). The approach reconstructs the time series by modulating the extreme values of the indices, a fundamental feature when evaluating extreme rainfall events in a region. The accuracy in the indices estimation shows values close to 1 in the Pearson's Correlation Coefficient and in the Bi-weighting Correlation. Moreover, values close to 0 in the percent bias and RMSE-observations standard deviation ratio. The database provided here is an essential input in future evaluation studies of extreme rainfall events in the Metropolitan area of Cali, the third most crucial urban conglomerate in Colombia with more than 3.9 million inhabitants.

Integrating Spatial Modelling and Space-Time Pattern Mining Analytics for Vector Disease-Related Health Perspectives: A Case of Dengue Fever in Pakistan

The spatial–temporal assessment of vector diseases is imperative to design effective action plans and establish preventive strategies. Therefore, such assessments have potential public health planning-related implications. In this context, we here propose an integrated spatial disease evaluation (I-SpaDE) framework. The I-SpaDE integrates various techniques such as the Kernel Density Estimation, the Optimized Hot Spot Analysis, space–time assessment and prediction, and the Geographically Weighted Regression (GWR). It makes it possible to systematically assess the disease concentrations, patterns/trends, clustering, prediction dynamics, and spatially varying relationships between disease and different associated factors. To demonstrate the applicability and effectiveness of the I-SpaDE, we apply it in the second largest city of Pakistan, namely Lahore, using Dengue Fever (DF) during 2007–2016 as an example vector disease. The most significant clustering is evident during the years 2007–2008, 2010–2011, 2013, and 2016. Mostly, the clusters are found within the city’s central functional area. The prediction analysis shows an inclination of DF distribution from less to more urbanized areas. The results from the GWR show that among various socio-ecological factors, the temperature is the most significantly associated with the DF followed by vegetation and built-up area. While the results are important to understand the DF situation in the study area and have useful implications for public health planning, the proposed framework is flexible, replicable, and robust to be utilized in other similar regions, particularly in developing countries in the tropics and sub-tropics.

A review of GIS methodologies to analyze the dynamics of COVID-19 in the second half of 2020

COVID-19 has infected over 163 million people and has resulted in over 3.9 million deaths. Regarding the tools and strategies to research the ongoing pandemic, spatial analysis has been increasingly utilized to study the impacts of COVID-19. This article provides a review of 221 scientific articles that used spatial science to study the pandemic published from June 2020 to December 2020. The main objectives are: to identify the tools and techniques used by the authors; to review the subjects addressed and their disciplines; and to classify the studies based on their applications. This contribution will facilitate comparisons with the body of work published during the first half of 2020, revealing the evolution of the COVID-19 phenomenon through the lens of spatial analysis. Our results show that there was an increase in the use of both spatial statistical tools (e.g., geographically weighted regression, Bayesian models, spatial regression) applied to socioeconomic variables and analysis at finer spatial and temporal scales. We found an increase in remote sensing approaches, which are now widely applied in studies around the world. Lockdowns and associated changes in human mobility have been extensively examined using spatiotemporal techniques. Another dominant topic studied has been the relationship between pollution and COVID-19 dynamics, which enhance the impact of human activities on the pandemic's evolution. This represents a shift from the first half of 2020, when the research focused on climatic and weather factors. Overall, we have seen a vast increase in spatial tools and techniques to study COVID-19 transmission and the associated risk factors.

Dengue models based on machine learning techniques: A systematic literature review

BACKGROUND

Dengue modeling is a research topic that has increased in recent years. Early prediction and decision-making are key factors to control dengue. This Systematic Literature Review (SLR) analyzes three modeling approaches of dengue: diagnostic, epidemic, intervention. These approaches require models of prediction, prescription and optimization. This SLR establishes the state-of-the-art in dengue modeling, using machine learning, in the last years.

METHODS

Several databases were selected to search the articles. The selection was made based on Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) methodology. Sixty-four articles were obtained and analyzed to describe their strengths and limitations. Finally, challenges and opportunities for research on machine-learning for dengue modeling were identified.

RESULTS

Logistic regression was the most used modeling approach for the diagnosis of dengue (59.1%). The analysis of the epidemic approach showed that linear regression (17.4%) is the most used technique within the spatial analysis. Finally, the most used intervention modeling is General Linear Model with 70%.

CONCLUSIONS

We conclude that cause-effect models may improve diagnosis and understanding of dengue. Models that manage uncertainty can also be helpful, because of low data-quality in healthcare. Finally, decentralization of data, using federated learning, may decrease computational costs and allow model building without compromising data security.

The role of urbanisation in the spread of Aedes mosquitoes and the diseases they transmit-A systematic review

Background

This systematic review aims to assess how different urbanisation patterns related to rapid urban growth, unplanned expansion, and human population density affect the establishment and distribution of Aedes aegypti and Aedes albopictus and create favourable conditions for the spread of dengue, chikungunya, and Zika viruses.

Methods and findings

Following the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines, a systematic review was conducted using the PubMed, Virtual Health Library, Cochrane, WHO Library Database (WHOLIS), Google Scholar, and and the Institutional Repository for Information Sharing (IRIS) databases. From a total of 523 identified studies, 86 were selected for further analysis, and 29 were finally analysed after applying all inclusion and exclusion criteria. The main explanatory variables used to associate urbanisation with epidemiological/entomological outcomes were the following: human population density, urban growth, artificial geographical space, urban construction, and urban density. Associated with the lack of a global definition of urbanisation, several studies provided their own definitions, which represents one of the study’s limitations. Results were based on 8 ecological studies/models, 8 entomological surveillance studies, 7 epidemiological surveillance studies, and 6 studies consisting of spatial and predictive models. According to their focus, studies were categorised into 2 main subgroups, namely “Aedes ecology” and “transmission dynamics.” There was a consistent association between urbanisation and the distribution and density of Aedes mosquitoes in 14 of the studies and a strong relationship between vector abundance and disease transmission in 18 studies. Human population density of more than 1,000 inhabitants per square kilometer was associated with increased levels of arboviral diseases in 15 of the studies.

Conclusions

The use of different methods in the included studies highlights the interplay of multiple factors linking urbanisation with ecological, entomological, and epidemiological parameters and the need to consider a variety of these factors for designing effective public health approaches.

The expansion of urbanisation is often associated with the emergence and spread of vector-borne diseases by creating favourable conditions for the survival of Aedes species and the spread of dengue, chikungunya, and Zika viruses. This systematic review examined the relationship of urbanisation to the emergence and spread of Aedes mosquito–borne diseases and epidemics. From a total of 523 identified studies, 29 were included in the analysis. Studies were categorised into 2 main subgroups, namely “Aedes ecology” and “transmission dynamics” according to the main influence factors posed by urbanisation. Selected articles showed a clear relationship of urbanisation with distribution and density of Aedes mosquitoes and a robust association between vector production, human population density, and disease transmission. Differing definitions of ’urbanisation’ and the interplay of numerous factors linking urbanisation with ecological, entomological, and epidemiological parameters highlight the need for a multidimensional perspective when assessing the impacts of rapid and unplanned urban expansion and when designing effective control programmes.

Dengue, Severity Paradox, and Socioeconomic Distribution Among Afro-Colombians

BACKGROUND

The clinical presentation of dengue ranges from self-limited mild illness to severe forms, including death. African ancestry is often described as protective against dengue severity. However, in the Latin American context, African ancestry has been associated with increased mortality. This "severity paradox" has been hypothesized as resulting from confounding or heterogeneity by socioeconomic status (SES). However, few systematic analyses have been conducted to investigate the presence and nature of the disparity paradox.

METHODS

We fit Bayesian hierarchical spatiotemporal models using individual-level surveillance data from Cali, Colombia (2012-2017), to assess the overall morbidity and severity burden of notified dengue. We fitted overall and ethnic-specific models to assess the presence of heterogeneity by SES across and within ethnic groups (Afro-Colombian vs. non-Afro-Colombians), conducting sensitivity analyses to account for potential underreporting.

RESULTS

Our study included 65,402 dengue cases and 13,732 (21%) hospitalizations. Overall notified dengue incidence rates did not vary across ethnic groups. Severity risk was higher among Afro-Colombians (risk ratio [RR] = 1.16; 95% Credible Interval [95% CrI] = 1.08, 1.24) but after accounting for underreporting by ethnicity this association was nearly null (RR = 1.02; 95% CrI = 0.97, 1.07). Subsidized health insurance and low-SES were associated with increased overall dengue rates and severity.

CONCLUSION

The paradoxically increased severity among Afro-Colombians can be attributed to differential health-seeking behaviors and reporting among Afro-Colombians. Such differential reporting can be understood as a type of intersectionality between SES, insurance scheme, and ethnicity that requires a quantitative assessment in future studies.

Spatial connectivity in mosquito-borne disease models: a systematic review of methods and assumptions

Spatial connectivity plays an important role in mosquito-borne disease transmission. Connectivity can arise for many reasons, including shared environments, vector ecology and human movement. This systematic review synthesizes the spatial methods used to model mosquito-borne diseases, their spatial connectivity assumptions and the data used to inform spatial model components. We identified 248 papers eligible for inclusion. Most used statistical models (84.2%), although mechanistic are increasingly used. We identified 17 spatial models which used one of four methods (spatial covariates, local regression, random effects/fields and movement matrices). Over 80% of studies assumed that connectivity was distance-based despite this approach ignoring distant connections and potentially oversimplifying the process of transmission. Studies were more likely to assume connectivity was driven by human movement if the disease was transmitted by an Aedes mosquito. Connectivity arising from human movement was more commonly assumed in studies using a mechanistic model, likely influenced by a lack of statistical models able to account for these connections. Although models have been increasing in complexity, it is important to select the most appropriate, parsimonious model available based on the research question, disease transmission process, the spatial scale and availability of data, and the way spatial connectivity is assumed to occur.

The Impact of Sociological and Environmental Factors for Dengue Infection in Kuala Lumpur, Malaysia

BACKGROUND

Dengue incidence has grown dramatically around the world in recent years. Vector control is the only method to reduce dengue incidence due to the lack of a vaccine available. By understanding the factors contributed to the vector densities such as environmental and sociological factors, dengue prevention and control may succeed.

OBJECTIVE

This study is aimed at determining the impact of sociological and environmental factors contributing to dengue cases.

METHODS

The study surveyed 379 respondents with dengue history. The socio-environmental factors were evaluated by chi-square and binary regression.

RESULT

The chi-square results revealed sociological factors associated between family with dengue experience such as older age (p =0.012), fewer than four people in the household (p= 0.008), working people (p= 0.004) and apartment/terrace houses (p=0.023). Similarly, there is a significant association between respondent's dengue history and houses that are shaded with vegetation (p= 0.012) and the present of public playground areas near the residential (p = 0.011).

CONCLUSION

The study identified socio-environmental factors that play an important role in the abundance of Aedes mosquitoes and also for the local dengue control measures.

Climate variability, socio-ecological factors and dengue transmission in tropical Queensland, Australia: A Bayesian spatial analysis

BACKGROUND

Dengue is a wide-spread mosquito-borne disease globally with a likelihood of becoming endemic in tropical Queensland, Australia. The aim of this study was to analyse the spatial variation of dengue notifications in relation to climate variability and socio-ecological factors in the tropical climate zone of Queensland, Australia.

METHODS

Data on the number of dengue cases and climate variables including minimum temperature, maximum temperature and rainfall for the period of January 1^st, 2010 to December 31^st, 2015 were obtained for each Statistical Local Area (SLA) from Queensland Health and Australian Bureau of Meteorology, respectively. Socio-ecological data including estimated resident population, percentage of Indigenous population, housing structure (specifically terrace house), socio-economic index and land use types for each SLA were obtained from Australian Bureau of Statistics, and Australian Bureau of Agricultural and Resource Economics and Sciences, respectively. To quantify the relationship between dengue, climate and socio-ecological factors, multivariate Poisson regression models in a Bayesian framework were developed with a conditional autoregressive prior structure. Posterior parameters were estimated using Bayesian Markov Chain Monte Carlo simulation with Gibbs sampling.

RESULTS

In the tropical climate zone of Queensland, the estimated number of dengue cases was predicted to increase by 85% [95% Credible Interval (CrI): 25%, 186%] and 7% (95% CrI: 0.1%, 14%) for a 1-mm increase in average annual rainfall and 1% increase in the proportion of terrace houses, respectively. The estimated spatial variation (structured random effects) was small compared to the remaining unstructured variation, suggesting that the inclusion of covariates resulted in no residual spatial autocorrelation in dengue data.

CONCLUSIONS

Climate and socio-ecological factors explained much of the heterogeneity of dengue transmission dynamics in the tropical climate zone of Queensland. Results will help to further understand the risk factors of dengue transmission and will provide scientific evidence in designing effective local dengue control programs in the most needed areas.

Surveillance and Epidemiology of Dengue in Medellín, Colombia from 2009 to 2017

Dengue is the most prevalent arthropod-borne viral disease in humans, primarily transmitted by the Aedes aegypti mosquito. We conducted a descriptive analysis of dengue cases from 2009 to 2017 in Medellín, Colombia, using data available from the Secretariat of Health. We analyzed the burden of outbreak years on the healthcare system, risk of cases exhibiting severe illness, potential disease surveillance problems, gender and age as risk factors, and spatiotemporal patterns of disease occurrence. Our data consisted of 50,083 cases, separated based on whether they were diagnostic test negative, diagnostic test positive (primarily IgM ELISA), clinically confirmed, epidemiologically linked, or probable. We used dengue incidence to analyze epidemiological trends between our study years, related to human movement patterns, between gender and age-groups, and spatiotemporally. We used risk to analyze the severity of dengue cases between the study years. We identified human movement could contributed to dengue spread, and male individuals (incidence rate: 0.86; 95% CI: 0.76-0.96) and individuals younger than 15 years (incidence rate: 1.24; 95% CI: 1.13-1.34) have higher incidence of dengue and located critical parts of the city where dengue incidence was high. Analysis was limited by participant diagnostic information, data concerning circulating strains, and a lack of phylogenetic information. Understanding the characteristics of dengue is a fundamental part of improving the health outcomes of at-risk populations. This analysis will be useful to support studies and initiatives to counteract dengue and provide context to the surveillance data collected by the health authorities in Medellín.

Climatic and socio-economic factors supporting the co-circulation of dengue, Zika and chikungunya in three different ecosystems in Colombia

Dengue, Zika and chikungunya are diseases of global health significance caused by arboviruses and transmitted by the mosquito Aedes aegypti, which is of worldwide circulation. The arrival of the Zika and chikungunya viruses to South America increased the complexity of transmission and morbidity caused by these viruses co-circulating in the same vector mosquito species. Here we present an integrated analysis of the reported arbovirus cases between 2007 and 2017 and local climate and socio-economic profiles of three distinct Colombian municipalities (Bello, Cúcuta and Moniquirá). These locations were confirmed as three different ecosystems given their contrasted geographic, climatic and socio-economic profiles. Correlational analyses were conducted with both generalised linear models and generalised additive models for the geographical data. Average temperature, minimum temperature and wind speed were strongly correlated with disease incidence. The transmission of Zika during the 2016 epidemic appeared to decrease circulation of dengue in Cúcuta, an area of sustained high incidence of dengue. Socio-economic factors such as barriers to health and childhood services, inadequate sanitation and poor water supply suggested an unfavourable impact on the transmission of dengue, Zika and chikungunya in all three ecosystems. Socio-demographic influencers were also discussed including the influx of people to Cúcuta, fleeing political and economic instability from neighbouring Venezuela. Aedes aegypti is expanding its range and increasing the global threat of these diseases. It is therefore vital that we learn from the epidemiology of these arboviruses and translate it into an actionable local knowledge base. This is even more acute given the recent historical high of dengue cases in the Americas in 2019, preceding the COVID-19 pandemic, which is itself hampering mosquito control efforts.

Association among ecological and behavioural attributes, dengue vector and disease control: a cross-sectional study of the city of Dhaka, Bangladesh

BACKGROUND

This study examines vector density, the prevailing knowledge, awareness, attitudes and practice (KAAP) of community members regarding dengue disease and their willingness to pay (WTP) for vector control in Dhaka, Bangladesh.

METHODS

A population-based, cross-sectional study design was followed: (i) an entomological survey was carried out in 727 randomly selected households in 12 wards, representing four urban ecological zones and (ii) a survey of 330 household heads was conducted to study their KAAP. The χ2 test and multinomial logistic regression (MLR) were applied to investigate factors associated with WTP and other variables.

RESULTS

The Stegomyia indices significantly vary among the urban zones, revealing that the paved and built areas with concentrated public/commercial services have the highest mosquito density. Most respondents (93.9%) knew about dengue and its severity (90.3%); however, many of them were unaware (79.3%) about the types of mosquitoes causing dengue. MLR modelling reveals that average spending per month for mosquito control, household income and knowledge about the effects of land use and seasonality on dengue were significantly associated with the WTP for controlling the dengue vector.

CONCLUSIONS

Concerted efforts should be made to increase awareness about dengue transmission and develop community-based sustainable dengue vector control programmes involving both the public and private sectors.

Natural and human environment interactively drive spread pattern of COVID-19: A city-level modeling study in China

A novel Coronavirus COVID-19 has caused high morbidity and mortality in China and worldwide. A few studies have explored the impact of climate change or human activity on the disease incidence in China or a city. The integrated study concerning environment impact on the emerging disease is rarely reported. Therefore, based on the two-stage modeling study, we investigate the effect of both natural and human environment on COVID-19 incidence at a city level. Besides, the interactive effect of different factors on COVID-19 incidence is analyzed using Geodetector; the impact of effective factors and interaction terms on COVID-19 is simulated with Geographically Weighted Regression (GWR) models. The results find that mean temperature (MeanT), destination proportion in population flow from Wuhan (WH), migration scale (MS), and WH*MeanT, are generally promoting for COVID-19 incidence before Wuhan's shutdown (T1); the WH and MeanT play a determinant role in the disease spread in T1. The effect of environment on COVID-19 incidence after Wuhan's shutdown (T2) includes more factors (including mean DEM, relative humidity, precipitation (Pre), travel intensity within a city (TC), and their interactive terms) than T1, and their effect shows distinct spatial heterogeneity. Interestingly, the dividing line of positive-negative effect of MeanT and Pre on COVID-19 incidence is 8.5°C and 1 mm, respectively. In T2, WH has weak impact, but the MS has the strongest effect. The COVID-19 incidence in T2 without quarantine is also modeled using the developed GWR model, and the modeled incidence shows an obvious increase for 75.6% cities compared with reported incidence in T2 especially for some mega cities. This evidences national quarantine and traffic control take determinant role in controlling the disease spread. The study indicates that both natural environment and human factors integratedly affect the spread pattern of COVID-19 in China.

Exploring for Municipality-Level Socioeconomic Variables Related to Zika Virus Incidence in Colombia

Colombia experienced an outbreak of Zika virus infection during September 2015 until July 2016. This study aimed to identify the socioeconomic factors that at the municipality level correlate with this outbreak and therefore could have influenced its incidence. An analysis of publicly available, municipality-aggregated data related to eight potential explanatory socioeconomic variables was conducted. These variables are school dropout, low energy strata, social security system, savings capacity, tax, resources, investment, and debt. The response variable of interest in this study is the number of reported cases of Zika virus infection per people (projected) per square kilometer. Binomial regression models were performed. Results show that the best predictor variables of Zika virus occurrence, assuming an expected inverse relationship with socioeconomic status, are "school", "energy", and "savings". Contrary to expectations, proxies of socioeconomic status such as "investment", "tax", and "resources" were associated with an increase in the occurrence of Zika virus infection, while no association was detected for "social security" and "debt". Energy stratification, school dropout rate, and the percentage of the municipality's income that is saved conformed to the hypothesized inverse relationship between socioeconomic standing and Zika occurrence. As such, this study suggests these factors should be considered in Zika risk modeling.

Exploring convolutional neural networks and spatial video for on-the-ground mapping in informal settlements

BACKGROUND

The health burden in developing world informal settlements often coincides with a lack of spatial data that could be used to guide intervention strategies. Spatial video (SV) has proven to be a useful tool to collect environmental and social data at a granular scale, though the effort required to turn these spatially encoded video frames into maps limits sustainability and scalability. In this paper we explore the use of convolution neural networks (CNN) to solve this problem by automatically identifying disease related environmental risks in a series of SV collected from Haiti. Our objective is to determine the potential of machine learning in health risk mapping for these environments by assessing the challenges faced in adequately training the required classification models.

RESULTS

We show that SV can be a suitable source for automatically identifying and extracting health risk features using machine learning. While well-defined objects such as drains, buckets, tires and animals can be efficiently classified, more amorphous masses such as trash or standing water are difficult to classify. Our results further show that variations in the number of image frames selected, the image resolution, and combinations of these can be used to improve the overall model performance.

CONCLUSION

Machine learning in combination with spatial video can be used to automatically identify environmental risks associated with common health problems in informal settlements, though there are likely to be variations in the type of data needed for training based on location. Success based on the risk type being identified are also likely to vary geographically. However, we are confident in identifying a series of best practices for data collection, model training and performance in these settings. We also discuss the next step of testing these findings in other environments, and how adding in the simultaneously collected geographic data could be used to create an automatic health risk mapping tool.

Space-Time Conditional Autoregressive Modeling to Estimate Neighborhood-Level Risks for Dengue Fever in Cali, Colombia

Vector-borne diseases affect more than 1 billion people a year worldwide, causing more than 1 million deaths, and cost hundreds of billions of dollars in societal costs. Mosquitoes are the most common vectors responsible for transmitting a variety of arboviruses. Dengue fever (DENF) has been responsible for nearly 400 million infections annually. Dengue fever is primarily transmitted by female Aedes aegypti and Aedes albopictus mosquitoes. Because both Aedes species are peri-domestic and container-breeding mosquitoes, dengue surveillance should begin at the local level—where a variety of local factors may increase the risk of transmission. Dengue has been endemic in Colombia for decades and is notably hyperendemic in the city of Cali. For this study, we use weekly cases of DENF in Cali, Colombia, from 2015 to 2016 and develop space–time conditional autoregressive models to quantify how DENF risk is influenced by socioeconomic, environmental, and accessibility risk factors, and lagged weather variables. Our models identify high-risk neighborhoods for DENF throughout Cali. Statistical inference is drawn under Bayesian paradigm using Markov chain Monte Carlo techniques. The results provide detailed insight about the spatial heterogeneity of DENF risk and the associated risk factors (such as weather, proximity to Aedes habitats, and socioeconomic classification) at a fine level, informing public health officials to motivate at-risk neighborhoods to take an active role in vector surveillance and control, and improving educational and surveillance resources throughout the city of Cali.

Comparing different spatio-temporal modeling methods in dengue fever data analysis in Colombia during 2012-2015

In this paper, we compare a variety of spatio-temporal conditional autoregressive models to a dengue fever dataset in Colombia, and incorporate an innovative data transformation method in the data analysis. In order to gain a better understanding on the effects of different niche variables in the epidemiological process, we explore Poisson-lognormal and binomial models with different Bayesian spatio-temporal modeling methods in this paper. Our results show that the selected model can well capture the variations of the data. The population density, elevation, daytime and night land surface temperatures are among the contributory variables to identify potential dengue outbreak regions; precipitation and vegetation variables are not significant in the selected spatio-temporal mixed effects model. The generated dengue fever probability maps from the model show a geographic distribution of risk that apparently coincides with the elevation gradient. The results in the paper provide the most benefits for future work in dengue studies.

Spatiotemporal and Socioeconomic Risk Factors for Dengue at the Province Level in Vietnam, 2013-2015: Clustering Analysis and Regression Model

Dengue is a serious infectious disease threat in Vietnam, but its spatiotemporal and socioeconomic risk factors are not currently well understood at the province level across the country and on a multiannual scale. We explore spatial trends, clusters and outliers in dengue case counts at the province level from 2011–2015 and use this to extract spatiotemporal variables for regression analysis of the association between dengue case counts and selected spatiotemporal and socioeconomic variables from 2013–2015. Dengue in Vietnam follows anticipated spatial trends, with a potential two-year cycle of high-high clusters in some southern provinces. Small but significant associations are observed between dengue case counts and mobility, population density, a province’s dengue rates the previous year, and average dengue rates two years previous in first and second order contiguous neighbours. Significant associations were not found between dengue case counts and housing pressure, access to electricity, clinician density, province-adjusted poverty rate, percentage of children below one vaccinated, or percentage of population in urban settings. These findings challenge assumptions about socioeconomic and spatiotemporal risk factors for dengue, and support national prevention targeting in Vietnam at the province level. They may also be of wider relevance for the study of other arboviruses, including Japanese encephalitis, Zika, and Chikungunya.

[Adequate solid waste management as a protection factor against dengue casesGestión adecuada de los residuos sólidos como factor de protección contra los casos de dengue]

Objetivo.

Verificar a existência de associação de indicadores de gestão de resíduos sólidos e socioeconômicos municipais com índices de incidência de dengue, Zika e Chikungunya nos municípios do estado brasileiro de Minas Gerais.

Métodos.

Este estudo de caráter exploratório, quantitativo e transversal abrangeu os 853 municípios do estado de Minas Gerais. Todos os dados utilizados foram secundários, coletados e agrupados por regionais de planejamento. Como variáveis independentes, foram consideradas a cobertura de coleta de resíduos sólidos urbanos, cobertura de coleta seletiva e massa de resíduos sólidos urbanos, além de um indicador da qualidade da destinação final de resídulos, índices de desenvolvimento humano municipal e de Gini, renda mensal per capita e porcentagem de vulneráveis à pobreza. Os fatores potencialmente associados aos desfechos – incidências municipais de dengue, Chikungunya e Zika – foram selecionados inicialmente através de análises univariadas. Posteriormente, os modelos de regressão linear para as incidências de dengue, Chikungunya ou Zika foram gerados considerando os preditores selecionados pela análise univariada.

Resultados.

Não foi observada associação entre gestão de resíduos sólidos e incidência de Chikungunya e Zika. Por sua vez, a incidência de dengue associou-se à gestão de resíduos sólidos e apresentou relação inversa significativa com o percentual de vulneráveis à pobreza. Houve também associação direta o índice de Gini, sugerindo que quanto maiores os registros de incidência de dengue de 2007 a 2016, maiores os valores de Gini dos municípios – ou seja, maior a desigualdade social. A cobertura da coleta seletiva apresentou relação inversa e significativa com os casos de dengue, sugerindo que quanto menor a cobertura da coleta de seletiva, maiores foram os casos registrados de dengue.

Conclusões.

A gestão de resíduos sólidos pode influenciar os casos de dengue e, por isso, deve ser considerada nas ações de saúde pública.

Exploring spatially varying demographic associations with gonorrhea incidence in Baltimore, Maryland, 2002-2005

The ability to establish spatial links between gonorrhea risk and demographic features is an important step in disease awareness and more effective prevention techniques. Past spatial analyses focused on local variations in risk, but not on spatial variations in associations with demographics. We collected data from the Baltimore City Health Department from 2002 to 2005 and evaluated demographic features known to be associated with gonorrhea risk in Baltimore, by allowing spatial variation in associations using Poisson geographically weighted regression (PGWR). The PGWR maps revealed variations in local relationships between race, education, and poverty with gonorrhea risk which were not captured previously. We determined that the PGWR model provided a significantly better fit to the data and yields a more nuanced interpretation of "core areas" of risk. The PGWR model's quantification of spatial variation in associations between disease risk and demographic features provides local and demographic structure to core areas of higher risk.

A Mapping Review on Urban Landscape Factors of Dengue Retrieved from Earth Observation Data, GIS Techniques, and Survey Questionnaires

To date, there is no effective treatment to cure dengue fever, a mosquito-borne disease which has a major impact on human populations in tropical and sub-tropical regions. Although the characteristics of dengue infection are well known, factors associated with landscape are highly scale dependent in time and space, and therefore difficult to monitor. We propose here a mapping review based on 78 articles that study the relationships between landscape factors and urban dengue cases considering household, neighborhood and administrative levels. Landscape factors were retrieved from survey questionnaires, Geographic Information Systems (GIS), and remote sensing (RS) techniques. We structured these into groups composed of land cover, land use, and housing type and characteristics, as well as subgroups referring to construction material, urban typology, and infrastructure level. We mapped the co-occurrence networks associated with these factors, and analyzed their relevance according to a three-valued interpretation (positive, negative, non significant). From a methodological perspective, coupling RS and GIS techniques with field surveys including entomological observations should be systematically considered, as none digital land use or land cover variables appears to be an univocal determinant of dengue occurrences. Remote sensing urban mapping is however of interest to provide a geographical frame to distribute human population and movement in relation to their activities in the city, and as spatialized input variables for epidemiological and entomological models.

Latent Infectious Capacities of Dengue Fever: Mathematical Modeling and Eco-Friendly Prevention Strategy

The main aim of this article is to propose a method for exploring the latent values about the capacities of spreading dengue for each potential site. First, a mathematical model connecting the observable public data and the capacities of spreading dengue is provided based on the split feasibility problem (SFP). Then, a proper iterative scheme for the SFP is presented to approach the values of infectious capacities (ICs) of potential sites—the capacities of spreading. The performance of our proposed method is demonstrated using public data from Kaohsiung City for 2014 and 2015. The results presented in this paper show that our proposed method is reliable and the sites with a high capacity of spreading are only a small portion of thousands of all potential sites and could be an alternative strategy for preventing the outbreak of dengue fever whilst also avoiding the damage of ecosystems caused by chemical insecticides.

Differential vulnerability and susceptibility: how to make use of recent development in our understanding of mediation and interaction to tackle health inequalities

This paper discusses the concepts of vulnerability and susceptibility and their relevance for understanding and tackling health inequalities. Tackling socioeconomic inequalities in health is based on an understanding of how an individual's social position influences disease risk. Conceptually, there are two possible mechanisms (not mutually exclusive): there is either some cause(s) of disease that are unevenly distributed across socioeconomic groups (differential exposure) or the effect of some cause(s) of disease differs across groups (differential effect). Since differential vulnerability and susceptibility are often used to denote the latter, we discuss these concepts and their current use and suggest an epidemiologically relevant distinction. The effect of social position can thus be mediated by causes that are unevenly distributed across social groups and/or interact with social position. Recent improvements in the methodology to estimate mediation and interaction have made it possible to calculate measures of relevance for setting targets and priorities in policy for health equity which include both mechanisms, i.e. equalize exposure or equalize effects. We finally discuss the importance of differential susceptibility and vulnerability for the choice of preventive strategies, including approaches that target high-risk individuals, whole populations and vulnerable groups.

Examining the Effect of the Environment and Commuting Flow from/to Epidemic Areas on the Spread of Dengue Fever

Environment and human mobility have been considered as two important factors that drive the outbreak and transmission of dengue fever (DF). Most studies focus on the local environment while neglecting environment of the places, especially epidemic areas that people came from or traveled to. Commuting is a major form of interactions between places. Therefore, this research generates commuting flows from mobile phone tracked data. Geographically weighted Poisson regression (GWPR) and analysis of variance (ANOVA) are used to examine the effect of commuting flows, especially those from/to epidemic areas, on DF in 2014 at the Jiedao level in Guangzhou. The results suggest that (1) commuting flows from/to epidemic areas affect the transmission of DF; (2) such effects vary in space; and (3) the spatial variation of the effects can be explained by the environment of the epidemic areas that commuters commuted from/to. These findings have important policy implications for making effective intervention strategies, especially when resources are limited.

Correlation of the basic reproduction number (R0) and eco-environmental variables in Colombian municipalities with chikungunya outbreaks during 2014-2016

Chikungunya virus (CHIKV) emerged in Colombia in 2014 into a population presumed fully susceptible. This resulted in a quick and intense spread across Colombia, resulting in an epidemic that affected an estimated 450,000 people. The reported Colombian cases accounted for over 49% of all the cases reported to the PAHO. Eco-environmental factors are known to be associated with the spread of arboviruses such as CHIKV, and likely contribute to the differences in transmission profiles that were observed across several municipalities. To determine the association of eco-environmental factors and CHIKV, the basic reproduction number (R₀) in 85 municipalities, which accounted for 65.6% of reported CHIKV cases in Colombia, was estimated. Estimates of R₀ ranged from 1 to 9, where over 76% of municipalities had R₀ values between 1 and 2. When we looked at the distribution of R₀, the cumulative proportions were 20% with R₀>2, 14% with R₀>3, and 9% with R₀>4. Next, we determined that there were different patterns of correlation between environmental and/or ecological variables and R₀ when we considered different R₀ lower-thresholds. Broadly, we found that temperature-related variables are significantly and positively correlated to R₀ regardless of the lower threshold, while other variables like duration of outbreak and size of the urban area are inversely related to R₀. Specifically, we conclude that high values of temperature-related variables where R₀ > 1 will result in a fast growth of cases in a shorter time period (with faster cessation of outbreak transmission) but will result overall in a fewer total cases compared to outbreak areas (R₀ > 1, but classified as lower). Thus, in the absence of vector control, a less explosive outbreak may be more advantageous for the virus in terms of transmission.

Chikungunya virus emerged in Colombia in 2014 into a presumed fully susceptible population and rapidly spread in the country. Numerous municipalities were differently affected by this virus across the country. The main purpose of this work was understanding why those differences were produced and, in turn, what are the variables addressing such differences. For this purpose, we estimated for 85 municipalities the basic reproduction number (R₀), a crucial parameter to understand epidemics that is expressed as the number of secondary cases produced by a primary case. Such parameter was correlated with numerous variables resulting evident a crucial role of temperature in the increase of R₀. Interestingly, other variables like size of the urban area and cases showed to be negatively correlated with R₀. Results shows that high temperatures produce high R₀, but those municipalities that showed high R₀ showed an explosive epidemic with faster increase of cases that ceased equally fast, so the duration of epidemic is short producing small amount of cases. In this way, more cases are expected with municipalities with lower values of R₀, which is suitably explained by the tortoise-hare model, where the less explosive outbreak results to be more advantageous for the virus.

Is asthma a protective factor for dengue fever? In vitro experiment and nationwide population-based cohort analysis

BACKGROUND

Dengue fever (DF) is the most rapidly spreading mosquito-borne viral disease. Practical vaccines or specific therapeutics are still expected. Environmental factors and genetic factors affect the susceptibility of Dengue virus (DV) infection. Asthma is a common allergic disease, with house dust mites (HDMs) being the most important allergens. Asthmatic patients are susceptible to several microorganism infections.

METHODS

A nationwide population-based cohort analysis was designed to assess whether to determine whether asthma can be a risk factor for DF.

RESULTS

Unexpectedly, our data from a nationwide population-based cohort revealed asthmatic patients are at a decreased risk of DF. Compared to patients without asthma, the hazard ratio (HR) for DF in patients with asthma was 0.166 (95% CI: 0.118-0.233) after adjustment for possible confounding factors. In the age stratification, the adjusted HR for DF in young adult patients with asthma was 0.063. Dendritic cell-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) of dendritic cells (DCs) is an important entry for DV. Through another in vitro experiment, we found that HDM can diminish surface expression of DC-SIGN in monocyte-derived DCs and further decrease the cellular entry of DV.

CONCLUSIONS

Decreased DC-SIGN expression in DCs of allergic asthmatic patient may be one of many factors for them to be protected against DF. This could implicate the potential for DC-SIGN modulation as a candidate target for designing therapeutic strategies for DF.

Landscapes of healthcare utilization during a dengue fever outbreak in an urban environment of Colombia

The well-being of a population and its health are influenced by a myriad of socioeconomic and environmental factors that interact across a wide range of scales, from the individual to the national and global levels. One of these factors is the provision of health services, which is regulated by both demand and supply. Although an adequate provision can significantly improve health outcomes of a population, lopsided flow of patients to specific health centers can result in serious disparities and potentially delay the timeliness of a diagnosis. In this paper, utilization patterns during an epidemic of dengue fever in the city of Cali, Colombia for the year 2010 are investigated. Specifically, the objectives are to (1) identify health facilities that exhibit patterns of over- and underutilization, (2) determine where patients who are being diagnosed at a particular facility originate from, and (3) whether patients are traveling to their closest facility and hence (4) estimate how far patients are willing to travel to be diagnosed and treated for dengue fever. Analysis is further decomposed by age group and by gender, in an attempt to test whether utilization patterns drastically change according to these variables. Answers to these questions can help health authorities plan for future epidemics, for instance, by providing guidelines as to which facilities require more resources and by improving the organization of health prevention campaigns to direct population seeking health assistance to use facilities that are underutilized.

20 Years Spatial-Temporal Analysis of Dengue Fever and Hemorrhagic Fever in Mexico

BACKGROUND AND AIM

Dengue Fever (DF) is a human vector-borne disease and a major public health problem worldwide. In Mexico, DF and Dengue Hemorrhagic Fever (DHF) cases have increased in recent years. The aim of this study was to identify variations in the spatial distribution of DF and DHF cases over time using space-time statistical analysis and geographic information systems.

METHODS

Official data of DF and DHF cases were obtained in 32 states from 1995-2015. Space-time scan statistics were used to determine the space-time clusters of DF and DHF cases nationwide, and a geographic information system was used to display the location of clusters.

RESULTS

A total of 885,748 DF cases was registered of which 13.4% (n = 119,174) correspond to DHF in the 32 states from 1995-2015. The most likely cluster of DF (relative risk = 25.5) contained the states of Jalisco, Colima, and Nayarit, on the Pacific coast in 2009, and the most likely cluster of DHF (relative risk = 8.5) was in the states of Chiapas, Tabasco, Campeche, Oaxaca, Veracruz, Quintana Roo, Yucatán, Puebla, Morelos, and Guerrero principally on the Gulf coast over 2006-2015.

CONCLUSION

The geographic distribution of DF and DHF cases has increased in recent years and cases are significantly clustered in two coastal areas (Pacific and Gulf of Mexico). This provides the basis for further investigation of risk factors as well as interventions in specific areas.

Spatiotemporal Heterogeneity in the Distribution of Chikungunya and Zika Virus Case Incidences during their 2014 to 2016 Epidemics in Barranquilla, Colombia

Chikungunya virus (CHIKV) and Zika virus (ZIKV) have recently emerged as globally important infections. This study aimed to explore the spatiotemporal heterogeneity in the occurrence of CHIKV and ZIKV outbreaks throughout the major international seaport city of Barranquilla, Colombia in 2014 and 2016 and the potential for clustering. Incidence data were fitted using multiple Bayesian Poisson models based on multiple explanatory variables as potential risk factors identified from other studies and options for random effects. A best fit model was used to analyse their case incidence risks and identify any risk factors during their epidemics. Neighbourhoods in the northern region were hotspots for both CHIKV and ZIKV outbreaks. Additional hotspots occurred in the southwestern and some eastern/southeastern areas during their outbreaks containing part of, or immediately adjacent to, the major circular city road with its import/export cargo warehouses and harbour area. Multivariate conditional autoregressive models strongly identified higher socioeconomic strata and living in a neighbourhood near a major road as risk factors for ZIKV case incidences. These findings will help to appropriately focus vector control efforts but also challenge the belief that these infections are driven by social vulnerability and merit further study both in Barranquilla and throughout the world's tropical and subtropical regions.

Modeling the spatially varying risk factors of dengue fever in Jhapa district, Nepal, using the semi-parametric geographically weighted regression model

Dengue fever is expanding rapidly in many tropical and subtropical countries since the last few decades. However, due to limited research, little is known about the spatial patterns and associated risk factors on a local scale particularly in the newly emerged areas. In this study, we explored spatial patterns and evaluated associated potential environmental and socioeconomic risk factors in the distribution of dengue fever incidence in Jhapa district, Nepal. Global and local Moran's I were used to assess global and local clustering patterns of the disease. The ordinary least square (OLS), geographically weighted regression (GWR), and semi-parametric geographically weighted regression (s-GWR) models were compared to describe spatial relationship of potential environmental and socioeconomic risk factors with dengue incidence. Our result revealed heterogeneous and highly clustered distribution of dengue incidence in Jhapa district during the study period. The s-GWR model best explained the spatial association of potential risk factors with dengue incidence and was used to produce the predictive map. The statistical relationship between dengue incidence and proportion of urban area, proximity to road, and population density varied significantly among the wards while the associations of land surface temperature (LST) and normalized difference vegetation index (NDVI) remained constant spatially showing importance of mixed geographical modeling approach (s-GWR) in the spatial distribution of dengue fever. This finding could be used in the formulation and execution of evidence-based dengue control and management program to allocate scare resources locally.

Understanding social inequalities in Zika infection and its consequences: A model of pathways and policy entry-points

The health consequences of arbovirus infections such as dengue fever (DENV), Chikungunya (CHIKV) and Zika (ZIKV) has in recent years become a public health challenge, due to failure of prevention followed by increased incidence and pronounced social inequality in occurrence and consequences. This motivates a more systematic analysis of the potential mechanisms and pathways that generate these inequalities. We present in the paper a model that delineates five possible mechanisms driving the inequality of ZIKV and congenital Zika syndrome (CZS). They include differential exposure to bad housing and sanitary conditions, differential exposure to vector density and virus, differential vulnerability to the health effects of exposure to virus, differential intrauterine susceptibility to the teratogenic effects of ZIKV infection and differential social consequences of caring for a disabled child. For each mechanism, we present empirical evidence or need for more research as well as a discussion about policy implications.

A Novel Sampling Method to Measure Socioeconomic Drivers of Aedes Albopictus Distribution in Mecklenburg County, North Carolina

Climate change, urbanization, and globalization have facilitated the spread of Aedes mosquitoes into regions that were previously unsuitable, causing an increased threat of arbovirus transmission on a global scale. While numerous studies have addressed the urban ecology of Ae. albopictus, few have accounted for socioeconomic factors that affect their range in urban regions. Here we introduce an original sampling design for Ae. albopictus, that uses a spatial optimization process to identify urban collection sites based on both geographic parameters as well as the gradient of socioeconomic variables present in Mecklenburg County, North Carolina, encompassing the city of Charlotte, a rapidly growing urban environment. We collected 3,645 specimens of Ae. albopictus (87% of total samples) across 12 weeks at the 90 optimized site locations and modelled the relationships between the abundance of gravid Ae. albopictus and a variety of neighborhood socioeconomic attributes as well as land cover characteristics. Our results demonstrate that the abundance of gravid Ae. albopictus is inversely related to the socioeconomic status of the neighborhood and directly related to both landscape heterogeneity as well as proportions of particular resident races/ethnicities. We present our results alongside a description of our novel sampling scheme and its usefulness as an approach to urban vector epidemiology. Additionally, we supply recommendations for future investigations into the socioeconomic determinants of vector-borne disease risk.

Neighborhood Violence Impacts Disease Control and Surveillance: Case Study of Cali, Colombia from 2014 to 2016

Arboviruses are responsible for a large burden of disease globally and are thus subject to intense epidemiological scrutiny. However, a variable notably absent from most epidemiological analyses has been the impact of violence on arboviral transmission and surveillance. Violence impedes surveillance and delivery of health and preventative services and affects an individual’s health-related behaviors when survival takes priority. Moreover, low and middle-income countries bear a disproportionately high burden of violence and related health outcomes, including vector borne diseases. To better understand the epidemiology of arboviral outbreaks in Cali, Colombia, we georeferenced chikungunya (CHIKV), dengue (DENV), and Zika (ZIKV) viral cases from The National System of Surveillance in Public Health between October 2014 and April 2016. We extracted homicide data from the municipal monthly reports and kernel density of homicide distribution from IdeasPaz. Crucially, an overall higher risk of homicide is associated with increased risk of reported DENV, lower rates of acute testing, and higher rates of lab versus clinical discordance. In the context of high violence as a potential barrier to access to preventive health services, a community approach to improve health and peace should be considered.

Spatial analysis of dengue fever and exploration of its environmental and socio-economic risk factors using ordinary least squares: A case study in five districts of Guangzhou City, China, 2014

OBJECTIVE

Spatial patterns and environmental and socio-economic risk factors of dengue fever have been studied widely on a coarse scale; however, there are few such quantitative studies on a fine scale. There is a need to investigate these factors on a fine scale for dengue fever.

METHODS

In this study, a dataset of dengue fever cases and environmental and socio-economic factors was constructed at 1-km spatial resolution, in particular 'land types' (LT), obtained from the first high resolution remote sensing satellite launched from China (GF-1 satellite), and 'land surface temperature', obtained from moderate resolution imaging spectroradiometer (MODIS) images. Spatial analysis methods, including point density, average nearest neighbor, spatial autocorrelation, and hot spot analysis, were used to analyze spatial patterns of dengue fever. Spearman rank correlation and ordinary least squares (OLS) were used to explore associated environmental and socio-economic risk factors of dengue fever in five districts of Guangzhou City, China in 2014.

RESULTS

A total of 30553 dengue fever cases were reported in the districts of Baiyun, Haizhu, Yuexiu, Liwan, and Tianhe of Guangzhou, China in 2014. Dengue fever cases showed strong seasonal variation. The cases from August to October accounted for 96.3% of the total cases in 2014. The top three districts for dengue fever morbidity were Baiyun (1.32%), Liwan (0.62%), and Haizhu (0.60%). Strong spatial clusters of dengue fever cases were observed. Areas of high density for dengue fever were located at the district junctions. The dengue fever outbreak was significantly correlated with LT, normalized difference water index (NDWI), land surface temperature of daytime (LSTD), land surface temperature of nighttime (LSTN), population density (PD), and gross domestic product (GDP) (correlation coefficients of 0.483, 0.456, 0.612, 0.699, 0.705, and 0.205, respectively). The OLS equation was built with dengue fever cases as the dependent variable and LT, LSTN, and PD as explanatory variables. The residuals were not spatially autocorrelated. The adjusted R-squared was 0.320.

CONCLUSIONS

The findings of spatio-temporal patterns and risk factors of dengue fever can provide scientific information for public health practitioners to formulate targeted, strategic plans and implement effective public health prevention and control measures.

Open data mining for Taiwan's dengue epidemic

By using a quantitative approach, this study examines the applicability of data mining technique to discover knowledge from open data related to Taiwan's dengue epidemic. We compare results when Google trend data are included or excluded. Data sources are government open data, climate data, and Google trend data. Research findings from analysis of 70,914 cases are obtained. Location and time (month) in open data show the highest classification power followed by climate variables (temperature and humidity), whereas gender and age show the lowest values. Both prediction accuracy and simplicity decrease when Google trends are considered (respectively 0.94 and 0.37, compared to 0.96 and 0.46). The article demonstrates the value of open data mining in the context of public health care.

The interplay of contextual layers: A multilevel analysis of income distribution, neighborhood infrastructure, socioeconomic position and self-rated health in Brazil

Our hypothesis is that neighborhood infrastructure modifies the association between state-level income distribution and self-rated health. In our findings neighborhood infrastructure amplifies the association between income equality and self-rated health, yet with a differential impact on health according to sex, race and education level favoring individuals at higher socioeconomic positions. Most of the individual health variation attributed to context happens at neighborhood level, based on random effects analyses. Our findings contribute to a further understanding of health inequalities in Brazil. The demonstrated synergism between state, neighborhood and individual level determinants of health supports inter-sectoral policies and interventions in a clearly multileveled way.

Serosurvey of Human Antibodies Recognizing Aedes aegypti D7 Salivary Proteins in Colombia

Background

Dengue is one of the most geographically significant mosquito-borne viral diseases transmitted by Aedes mosquitoes. During blood feeding, mosquitoes deposit salivary proteins that induce antibody responses. These can be related to the intensity of exposure to bites. Some mosquito salivary proteins, such as D7 proteins, are known as potent allergens. The antibody response to D7 proteins can be used as a marker to evaluate the risk of exposure and disease transmission and provide critical information for understanding the dynamics of vector–host interactions.

Methods

The study was conducted at the Los Patios Hospital, Cucuta, Norte de Santander, Colombia. A total of 63 participants were enrolled in the study. Participants were categorized into three disease status groups, age groups, and socioeconomic strata. The level of IgG antibodies against D7 Aedes proteins was determined by ELISA. We used a statistical approach to determine if there is an association between antibody levels and factors such as age, living conditions, and dengue virus (DENV) infection.

Results

We found that IgG antibodies against D7 proteins were higher in non-DENV infected individuals in comparison to DENV-infected participants. Also, the age factor showed a significant positive correlation with IgG antibodies against D7 proteins, and the living conditions (socioeconomic stratification), in people aged 20 years or older, are a statistically significant factor in the variability of IgG antibodies against D7 proteins.

Conclusion

This pilot study represents the first approximation to elucidate any correlation between the antibody response against mosquito D7 salivary proteins and its correlation with age, living conditions, and DENV infection in a dengue endemic area.