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Chakrabarty S, Wang Y, Perkins JC, Narayan ARH. Scalable biocatalytic C-H oxyfunctionalization reactions. Chem Soc Rev 2020; 49:8137-8155. [PMID: 32701110 PMCID: PMC8177087 DOI: 10.1039/d0cs00440e] [Citation(s) in RCA: 80] [Impact Index Per Article: 20.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Catalytic C-H oxyfunctionalization reactions have garnered significant attention in recent years with their ability to streamline synthetic routes toward complex molecules. Consequently, there have been significant strides in the design and development of catalysts that enable diversification through C-H functionalization reactions. Enzymatic C-H oxygenation reactions are often complementary to small molecule based synthetic approaches, providing a powerful tool when deployable on preparative-scale. This review highlights key advances in scalable biocatalytic C-H oxyfunctionalization reactions developed within the past decade.
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Affiliation(s)
- Suman Chakrabarty
- Life Sciences Institute, University of Michigan, Ann Arbor, MI 48109, USA.
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Abzianidze VV, Panikorovskii TL, Chisty LS, Kochura DM, Krivorotov DV, Kuznetsov VA, Radilov AS. Synthesis and Elucidation of Structure of Deuterated Androsta-3,5-diene-7,17-dione. RUSS J GEN CHEM+ 2018. [DOI: 10.1134/s1070363217120520] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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3
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Atzrodt J, Derdau V, Kerr WJ, Reid M. Deuterium- und tritiummarkierte Verbindungen: Anwendungen in den modernen Biowissenschaften. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201704146] [Citation(s) in RCA: 90] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Jens Atzrodt
- Isotope Chemistry and Metabolite Synthesis, Integrated Drug Discovery, Medicinal Chemistry; Industriepark Höchst, G876 65926 Frankfurt Deutschland
| | - Volker Derdau
- Isotope Chemistry and Metabolite Synthesis, Integrated Drug Discovery, Medicinal Chemistry; Industriepark Höchst, G876 65926 Frankfurt Deutschland
| | - William J. Kerr
- Department of Pure and Applied Chemistry, WestCHEM; University of Strathclyde; 295 Cathedral Street Glasgow Scotland G1 1XL Großbritannien
| | - Marc Reid
- Department of Pure and Applied Chemistry, WestCHEM; University of Strathclyde; 295 Cathedral Street Glasgow Scotland G1 1XL Großbritannien
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Atzrodt J, Derdau V, Kerr WJ, Reid M. Deuterium- and Tritium-Labelled Compounds: Applications in the Life Sciences. Angew Chem Int Ed Engl 2018; 57:1758-1784. [PMID: 28815899 DOI: 10.1002/anie.201704146] [Citation(s) in RCA: 407] [Impact Index Per Article: 67.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2017] [Revised: 07/27/2017] [Indexed: 12/19/2022]
Abstract
Hydrogen isotopes are unique tools for identifying and understanding biological and chemical processes. Hydrogen isotope labelling allows for the traceless and direct incorporation of an additional mass or radioactive tag into an organic molecule with almost no changes in its chemical structure, physical properties, or biological activity. Using deuterium-labelled isotopologues to study the unique mass-spectrometric patterns generated from mixtures of biologically relevant molecules drastically simplifies analysis. Such methods are now providing unprecedented levels of insight in a wide and continuously growing range of applications in the life sciences and beyond. Tritium (3 H), in particular, has seen an increase in utilization, especially in pharmaceutical drug discovery. The efforts and costs associated with the synthesis of labelled compounds are more than compensated for by the enhanced molecular sensitivity during analysis and the high reliability of the data obtained. In this Review, advances in the application of hydrogen isotopes in the life sciences are described.
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Affiliation(s)
- Jens Atzrodt
- Isotope Chemistry and Metabolite Synthesis, Integrated Drug Discovery, Medicinal Chemistry, Industriepark Höchst, G876, 65926, Frankfurt, Germany
| | - Volker Derdau
- Isotope Chemistry and Metabolite Synthesis, Integrated Drug Discovery, Medicinal Chemistry, Industriepark Höchst, G876, 65926, Frankfurt, Germany
| | - William J Kerr
- Department of Pure and Applied Chemistry, WestCHEM, University of Strathclyde, 295 Cathedral Street, Glasgow, Scotland, G1 1XL, UK
| | - Marc Reid
- Department of Pure and Applied Chemistry, WestCHEM, University of Strathclyde, 295 Cathedral Street, Glasgow, Scotland, G1 1XL, UK
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Huang Y, Chen J, Liu B, Wang H, Zhang L, Chen Z, Zhang Y. An efficient synthesis of deuterium-labeled degarelix acetate, a third-generation gonadotropin-releasing hormone receptor antagonist. J Labelled Comp Radiopharm 2017; 61:355-361. [PMID: 28960413 DOI: 10.1002/jlcr.3567] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2017] [Revised: 09/14/2017] [Accepted: 09/22/2017] [Indexed: 11/11/2022]
Abstract
Degarelix acetate, a third-generation gonadotropin-releasing hormone receptor antagonist, shows great potential in the treatment of many androgen-related diseases. To support clinical studies of degarelix acetate, deuterium-labeled degarelix is highly desired for use as an internal standard. Using D2 O/D3 PO4 as a deuterium source, 2-amino-3-(naphthalen-2-yl)propanoic acid was converted to deuterated degarelix acetate in 13 steps and in 14% overall yield.
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Affiliation(s)
- Yu Huang
- Chia Tai Tianqing Pharmaceutical Group Co., Ltd., Jiangsu's Key Laboratory of Targeted Antiviral Research, Nanjing, Jiangsu Province, China
| | - Jingshun Chen
- Chia Tai Tianqing Pharmaceutical Group Co., Ltd., Jiangsu's Key Laboratory of Targeted Antiviral Research, Nanjing, Jiangsu Province, China
| | - Baomin Liu
- Chia Tai Tianqing Pharmaceutical Group Co., Ltd., Jiangsu's Key Laboratory of Targeted Antiviral Research, Nanjing, Jiangsu Province, China
| | - Hua Wang
- Chia Tai Tianqing Pharmaceutical Group Co., Ltd., Jiangsu's Key Laboratory of Targeted Antiviral Research, Nanjing, Jiangsu Province, China
| | - Lu Zhang
- Chia Tai Tianqing Pharmaceutical Group Co., Ltd., Jiangsu's Key Laboratory of Targeted Antiviral Research, Nanjing, Jiangsu Province, China
| | - Zhengbang Chen
- Chia Tai Tianqing Pharmaceutical Group Co., Ltd., Jiangsu's Key Laboratory of Targeted Antiviral Research, Nanjing, Jiangsu Province, China
| | - Yinsheng Zhang
- Chia Tai Tianqing Pharmaceutical Group Co., Ltd., Jiangsu's Key Laboratory of Targeted Antiviral Research, Nanjing, Jiangsu Province, China
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Burhop A, Prohaska R, Weck R, Atzrodt J, Derdau V. Burgess iridium(I)-catalyst for selective hydrogen isotope exchange. J Labelled Comp Radiopharm 2017; 60:343-348. [PMID: 28406535 DOI: 10.1002/jlcr.3512] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2017] [Revised: 03/28/2017] [Accepted: 04/05/2017] [Indexed: 11/11/2022]
Abstract
We have evaluated the commercially available Burgess catalyst in hydrogen isotope exchange reactions with several substrates bearing different directing group functionalities and have obtained moderate to high (50%-97%D) deuterium incorporations. The broad applicability in hydrogen isotope exchange reactions makes the Burgess catalyst a possible alternative compared to other commercially available iridium(I)-catalysts.
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Affiliation(s)
- Annina Burhop
- Integrated Drug Discovery, Med. Chem., Isotope Chemistry and Metabolite Synthesis, Sanofi-Aventis Deutschland GmbH, Frankfurt, Germany
| | - Raphail Prohaska
- Integrated Drug Discovery, Med. Chem., Isotope Chemistry and Metabolite Synthesis, Sanofi-Aventis Deutschland GmbH, Frankfurt, Germany
| | - Remo Weck
- Integrated Drug Discovery, Med. Chem., Isotope Chemistry and Metabolite Synthesis, Sanofi-Aventis Deutschland GmbH, Frankfurt, Germany
| | - Jens Atzrodt
- Integrated Drug Discovery, Med. Chem., Isotope Chemistry and Metabolite Synthesis, Sanofi-Aventis Deutschland GmbH, Frankfurt, Germany
| | - Volker Derdau
- Integrated Drug Discovery, Med. Chem., Isotope Chemistry and Metabolite Synthesis, Sanofi-Aventis Deutschland GmbH, Frankfurt, Germany
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Giles R, Lee A, Jung E, Kang A, Jung KW. Hydrogen-deuterium exchange of aromatic amines and amides using deuterated trifluoroacetic acid. Tetrahedron Lett 2015; 56:747-749. [PMID: 25641994 PMCID: PMC4310004 DOI: 10.1016/j.tetlet.2014.12.102] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
Abstract
The H-D exchange of aromatic amines and amides, including pharmaceutically relevant compounds such as acetaminophen and diclofenac, was investigated using CF3COOD as both the sole reaction solvent and source of deuterium label. The described method is amenable to efficient deuterium incorporation for a wide variety of substrates possessing both electron-donating and electron-withdrawing substituents. Best results were seen with less basic anilines and highly activated acetanilides, reflecting the likelihood of different mechanistic pathways.
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Affiliation(s)
- Richard Giles
- Loker Hydrocarbon Research Institute and Department of Chemistry, University of Southern California, Los Angeles, California 90089, USA
| | - Amy Lee
- Loker Hydrocarbon Research Institute and Department of Chemistry, University of Southern California, Los Angeles, California 90089, USA
| | - Erica Jung
- Loker Hydrocarbon Research Institute and Department of Chemistry, University of Southern California, Los Angeles, California 90089, USA
| | - Aaron Kang
- Loker Hydrocarbon Research Institute and Department of Chemistry, University of Southern California, Los Angeles, California 90089, USA
| | - Kyung Woon Jung
- Loker Hydrocarbon Research Institute and Department of Chemistry, University of Southern California, Los Angeles, California 90089, USA
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Sandham DA, Page CJ. Synthetic approaches to site selective deuterium incorporation in a novel CRTh2 receptor antagonist clinical candidate. J Labelled Comp Radiopharm 2014; 57:175-7. [DOI: 10.1002/jlcr.3174] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2013] [Accepted: 11/26/2013] [Indexed: 01/26/2023]
Affiliation(s)
- David A. Sandham
- Global Discovery Chemistry, Novartis Institutes of Biomedical Research; Horsham Research Centre; Wimblehurst Road Horsham RH12 5AB UK
| | - Christopher J. Page
- Global Discovery Chemistry, Novartis Institutes of Biomedical Research; Horsham Research Centre; Wimblehurst Road Horsham RH12 5AB UK
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Poraj-Kobielska M, Atzrodt J, Holla W, Sandvoss M, Gröbe G, Scheibner K, Hofrichter M. Preparation of labeled human drug metabolites and drug-drug interaction-probes with fungal peroxygenases. J Labelled Comp Radiopharm 2013; 56:513-9. [PMID: 24285530 DOI: 10.1002/jlcr.3103] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2013] [Revised: 06/28/2013] [Accepted: 07/01/2013] [Indexed: 01/15/2023]
Abstract
Enzymatic conversion of a drug can be an efficient alternative for the preparation of a complex metabolite compared with a multi-step chemical synthesis approach. Limitations exist for chemical methods for direct oxygen incorporation into organic molecules often suffering from low yields and unspecific oxidation and also for alternative whole-cell biotransformation processes, which require specific fermentation know-how. Stable oxygen-transferring biocatalysts such as unspecific peroxygenases (UPOs) could be an alternative for the synthesis of human drug metabolites and related stable isotope-labeled analogues. This work shows that UPOs can be used in combination with hydrogen/deuterium exchange for an efficient one-step process for the preparation of 4'-OH-diclofenac-d6. The scope of the reaction was investigated by screening of different peroxygenase subtypes for the transformation of selected deuterium-labeled substrates such as phenacetin-d3 or lidocaine-d3. Experiments with diclofenac-d7 revealed that the deuterium-labeling does not affect the kinetic parameters. By using the latter substrate and H2 (18) O2 as cosubstrate, it was possible to prepare a doubly isotope-labeled metabolite (4'-(18) OH-diclofenac-d6). UPOs offer certain practical advantages compared with P450 enzyme systems in terms of stability and ease of handling. Given these advantages, future work will expand the existing 'monooxygenation toolbox' of different fungal peroxygenases that mimic P450 in vitro reactions.
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Affiliation(s)
- Marzena Poraj-Kobielska
- Department of Biological and Environmental Sciences, TU Dresden - International Institute Zittau, Markt 23, 02763, Zittau, Germany
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Atzrodt J, Derdau V. Selected scientific topics of the 11th International Isotope Symposium on the Synthesis and Applications of Isotopes and Isotopically Labeled Compounds. J Labelled Comp Radiopharm 2013; 56:408-16. [PMID: 24285513 DOI: 10.1002/jlcr.3096] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2013] [Revised: 06/19/2013] [Accepted: 06/19/2013] [Indexed: 01/02/2023]
Abstract
This micro-review describes hot topics and new trends in isotope science discussed at the 11th International Isotope Symposium on the Synthesis and Applications of Isotopes and Isotopically Labeled Compounds from a personal perspective.
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Affiliation(s)
- Jens Atzrodt
- Isotope Chemistry & Metabolite Synthesis, DSAR-DD, Sanofi-Aventis Deutschland GmbH, Industriepark Höchst G876, 65926, Frankfurt am Main, Germany
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