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Oliveira LT, Marcos CM, Cabral AKLF, Medina-Alarcón KP, Pires RH, Fusco-Almeida AM, Mendes-Giannini MJS. Paracoccidioides spp.: the structural characterization of extracellular matrix, expression of glucan synthesis and associated genes and adhesins during biofilm formation. Front Microbiol 2024; 15:1354140. [PMID: 38516014 PMCID: PMC10955377 DOI: 10.3389/fmicb.2024.1354140] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2024] [Accepted: 02/19/2024] [Indexed: 03/23/2024] Open
Abstract
The genus Paracoccidioides includes Paracoccidioides lutzii and the Paracoccidioides brasiliensis complex, which comprises four phylogenetic species. A key feature distinguishing planktonic growth from biofilm is the presence of a 3D extracellular matrix (ECM). Therefore, in this study, we analyzed biofilm formation in different species of Paracoccidioides yeast phase, characterized the structural elements of the matrix of P. brasiliensis (Pb18), P. lutzii (Pl01 and 8334) and P. restrepiensis (339 and 192) and evaluated the expression of glucan genes, according to the stage of biofilm evolution for P. brasiliensis. The strains were cultivated in planktonic and biofilm form for 24-144 h. The fungi biomass and metabolic activity were determined by crystal violet and tetrazolium salt reduction (XTT) tests and colony-forming unit (CFU) by plating. The biofilm structure was designed using scanning electron microscopy and confocal laser scanning microscopy techniques. The extracellular matrix of P. brasiliensis and P. lutzii biofilms was extracted by sonication, and polysaccharides, proteins, and extracellular DNA (eDNA) were quantified. The RNA was extracted with the Trizol® reagent and quantified; then, the cDNA was synthesized to analyze the enolase expression, 14-3-3, FKS1, AGS1, GEL3, and KRE6 genes by real-time PCR. All strains of Paracoccidioides studied form a biofilm with more significant metabolic activity and biomass values in 144 h. The extracellular matrix of P. brasiliensis and P. lutzii had a higher content of polysaccharides in their composition, followed by proteins and eDNA in smaller quantities. The P. brasiliensis biofilm kinetics of formation showed greater expression of genes related to glucan's synthesis and its delivery to the external environment in addition adhesins during the biofilm's adhesion, initiation, and maturation. The GEL3 and enolase genes increased in expression within 24 h and during the biofilm maturation period, there was an increase in 14-3-3, AGS1, and FKS1. Furthermore, at 144 h, there was a decrease in KRE6 expression and an increase in GEL3. This study highlights the potential for biofilm formation for three species of Paracoccidioides and the main components of the extracellular matrix that can contribute to a better understanding of biofilm organization.
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Affiliation(s)
- Lariane Teodoro Oliveira
- Department of Clinical Analysis, School of Pharmaceutical Sciences, São Paulo State University (UNESP), Araraquara, Brazil
| | - Caroline Maria Marcos
- Department of Clinical Analysis, School of Pharmaceutical Sciences, São Paulo State University (UNESP), Araraquara, Brazil
| | - Ana Karla Lima Freire Cabral
- Department of Clinical Analysis, School of Pharmaceutical Sciences, São Paulo State University (UNESP), Araraquara, Brazil
- Laboratory of Medical Mycology, School of Pharmaceutical Sciences, Federal University of Amazonas-UFAM, Manaus, Brazil
| | - Kaila Petronila Medina-Alarcón
- Department of Clinical Analysis, School of Pharmaceutical Sciences, São Paulo State University (UNESP), Araraquara, Brazil
| | - Regina Helena Pires
- Laboratory of Mycology and Environmental Diagnosis, University of Franca, Franca, Brazil
| | - Ana Marisa Fusco-Almeida
- Department of Clinical Analysis, School of Pharmaceutical Sciences, São Paulo State University (UNESP), Araraquara, Brazil
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Zhu S, Zhang Z, Wen C, Zhu S, Li C, Xu H, Luo X. Transport and transformations of cadmium in water-biofilm-sediment phases as affected by hydrodynamic conditions. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 354:120368. [PMID: 38394874 DOI: 10.1016/j.jenvman.2024.120368] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/12/2023] [Revised: 01/08/2024] [Accepted: 02/08/2024] [Indexed: 02/25/2024]
Abstract
Hydrodynamic conditions play a crucial role in governing the fate, transport, and risks of metal elements. However, the contribution of hydrodynamic conditions to the fate and transport of heavy metals among water, sediment, and biofilm phases is poorly understood. In our study, we conducted experiments in controlled hydrodynamic conditions using a total of 6 two-phase and 9 three-phase mesocosms consisting of water, biofilm, and sediment. We also measured Cd (cadmium) specification in different phases to assess how hydrodynamic forces control Cd bioavailability. We found that turbulent flow destroyed the surface morphology of the biofilm and significantly decreased the content of extracellular polymeric substances (p < 0.05). This led to a decrease in the biofilm's adsorption capacity for Cd, with the maximum adsorption capacity (0.124 mg/g) being one-tenth of that under static conditions (1.256 mg/g). The Cd chemical forms in the biofilm and sediment were significantly different, with the highest amount of Cd in the biofilm being acid-exchangeable, accounting for up to 95.1% of the total Cd content. Cd was more easily released in the biofilm due to its weak binding state, while Cd in the sediment existed in more stable chemical forms. Hydrodynamic conditions altered the migration behavior and distribution characteristics of Cd in the system by changing the adsorption capacity of the biofilm and sediment for Cd. Cd mobility increased in laminar flow but decreased in turbulent flow. These results enhance our understanding of the underlying mechanisms that control the mobility and bioavailability of metals in aquatic environments with varying hydrodynamic conditions.
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Affiliation(s)
- Shijun Zhu
- Institute of International Rivers and Eco-Security, Yunnan University, Kunming 650500, China; Yunnan Key Laboratory of International Rivers and Transboundary Eco-Security, Kunming 650500, China
| | - Zixiang Zhang
- Institute of International Rivers and Eco-Security, Yunnan University, Kunming 650500, China
| | - Chen Wen
- Institute of International Rivers and Eco-Security, Yunnan University, Kunming 650500, China; Yunnan Key Laboratory of International Rivers and Transboundary Eco-Security, Kunming 650500, China
| | - Shiqi Zhu
- Institute of International Rivers and Eco-Security, Yunnan University, Kunming 650500, China; Yunnan Key Laboratory of International Rivers and Transboundary Eco-Security, Kunming 650500, China
| | - Chunyan Li
- Institute of International Rivers and Eco-Security, Yunnan University, Kunming 650500, China; Yunnan Key Laboratory of International Rivers and Transboundary Eco-Security, Kunming 650500, China
| | - Hansen Xu
- Institute of International Rivers and Eco-Security, Yunnan University, Kunming 650500, China; Yunnan Key Laboratory of International Rivers and Transboundary Eco-Security, Kunming 650500, China
| | - Xia Luo
- Institute of International Rivers and Eco-Security, Yunnan University, Kunming 650500, China; Yunnan Key Laboratory of International Rivers and Transboundary Eco-Security, Kunming 650500, China.
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Luo X, Yang Y, Xie S, Wang W, Li N, Wen C, Zhu S, Chen L. Drying and rewetting induce changes in biofilm characteristics and the subsequent release of metal ions. JOURNAL OF HAZARDOUS MATERIALS 2022; 433:128832. [PMID: 35390615 DOI: 10.1016/j.jhazmat.2022.128832] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/17/2021] [Revised: 03/15/2022] [Accepted: 03/30/2022] [Indexed: 06/14/2023]
Abstract
Drying and rewetting can markedly influence the microbial structure and function of river biofilm communities and potentially result in the release of metal ions from biofilms containing metals. However, little information is available on the response of metal-enriched biofilms to drying and rewetting over time. In this study, natural biofilms were allowed to develop in four rotating annular bioreactors for 2-11 weeks, followed by drying for 5 days and rewetting for another 5 days. Subsequently, we assessed Zn, Cd, and As desorption from the biofilms and other related parameters (microbial community structure, biofilm morphology, enzyme activity, and surface components as well as characteristics). High-throughput sequencing of the 16 S rRNA gene and confocal laser scanning microscopy revealed that the biofilm architecture and bacterial communities were distinct in different growth phases and under drying and rewetting conditions (permutational multivariate analysis of variance; p = 0.001). Proteobacteria was the dominant bacterial phylum, accounting for 69.7-90.1% of the total content. Kinetic experiments revealed that the drying and rewetting process increased metal desorption from the biofilm matrix. The desorption of heavy metals was affected by the age of the biofilm, with the maximum amount of metal ions released from 2-week-old biofilms (one-way ANOVA, Zn: p < 0.001; Cd: p = 0.008; As: p < 0.001). The modifications in biofilm properties and decreased diversity of the bacterial community (paired t-test, p < 0.05) after drying and rewetting decreased the number of specific binding sites for metal ions. In addition, negatively charged arsenate and other anions in the liquid phase could compete with As ions for adsorption sites to promote the release of As(V) and/or reductive desorption of As(III). The results of this study and their interpretation are expected to help refine the behaviors of heavy metals in the aquatic environment.
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Affiliation(s)
- Xia Luo
- Institute of International Rivers and Eco-Security, Yunnan University, Kunming 650500, China; Yunnan Key Laboratory of International Rivers and Transboundary Eco-Security, Kunming 650500, China.
| | - Yuanhao Yang
- Institute of International Rivers and Eco-Security, Yunnan University, Kunming 650500, China; Yunnan Key Laboratory of International Rivers and Transboundary Eco-Security, Kunming 650500, China
| | - Shanshan Xie
- Institute of International Rivers and Eco-Security, Yunnan University, Kunming 650500, China; Yunnan Key Laboratory of International Rivers and Transboundary Eco-Security, Kunming 650500, China
| | - Wenwen Wang
- Institute of International Rivers and Eco-Security, Yunnan University, Kunming 650500, China; Yunnan Key Laboratory of International Rivers and Transboundary Eco-Security, Kunming 650500, China
| | - Nihong Li
- Institute of International Rivers and Eco-Security, Yunnan University, Kunming 650500, China; Yunnan Key Laboratory of International Rivers and Transboundary Eco-Security, Kunming 650500, China
| | - Chen Wen
- Institute of International Rivers and Eco-Security, Yunnan University, Kunming 650500, China; Yunnan Key Laboratory of International Rivers and Transboundary Eco-Security, Kunming 650500, China
| | - Shijun Zhu
- Institute of International Rivers and Eco-Security, Yunnan University, Kunming 650500, China; Yunnan Key Laboratory of International Rivers and Transboundary Eco-Security, Kunming 650500, China
| | - Liqiang Chen
- Institute of International Rivers and Eco-Security, Yunnan University, Kunming 650500, China; Yunnan Key Laboratory of International Rivers and Transboundary Eco-Security, Kunming 650500, China.
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Tong CY, Derek CJC. A Methodological Review on the Characterization of Microalgal Biofilm and Its Extracellular Polymeric Substances. J Appl Microbiol 2022; 132:3490-3514. [DOI: 10.1111/jam.15455] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2021] [Revised: 12/21/2021] [Accepted: 01/17/2022] [Indexed: 11/28/2022]
Affiliation(s)
- C. Y. Tong
- School of Chemical Engineering, Engineering Campus Universiti Sains Malaysia 14300 Nibong Tebal, Penang Malaysia
| | - C. J. C Derek
- School of Chemical Engineering, Engineering Campus Universiti Sains Malaysia 14300 Nibong Tebal, Penang Malaysia
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Ghassemi N, Poulhazan A, Deligey F, Mentink-Vigier F, Marcotte I, Wang T. Solid-State NMR Investigations of Extracellular Matrixes and Cell Walls of Algae, Bacteria, Fungi, and Plants. Chem Rev 2021; 122:10036-10086. [PMID: 34878762 DOI: 10.1021/acs.chemrev.1c00669] [Citation(s) in RCA: 55] [Impact Index Per Article: 18.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Extracellular matrixes (ECMs), such as the cell walls and biofilms, are important for supporting cell integrity and function and regulating intercellular communication. These biomaterials are also of significant interest to the production of biofuels and the development of antimicrobial treatment. Solid-state nuclear magnetic resonance (ssNMR) and magic-angle spinning-dynamic nuclear polarization (MAS-DNP) are uniquely powerful for understanding the conformational structure, dynamical characteristics, and supramolecular assemblies of carbohydrates and other biomolecules in ECMs. This review highlights the recent high-resolution investigations of intact ECMs and native cells in many organisms spanning across plants, bacteria, fungi, and algae. We spotlight the structural principles identified in ECMs, discuss the current technical limitation and underexplored biochemical topics, and point out the promising opportunities enabled by the recent advances of the rapidly evolving ssNMR technology.
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Affiliation(s)
- Nader Ghassemi
- Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, United States
| | - Alexandre Poulhazan
- Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, United States.,Department of Chemistry, Université du Québec à Montréal, Montreal H2X 2J6, Canada
| | - Fabien Deligey
- Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, United States
| | | | - Isabelle Marcotte
- Department of Chemistry, Université du Québec à Montréal, Montreal H2X 2J6, Canada
| | - Tuo Wang
- Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, United States
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Abstract
In view of high energy cost and water consumption in microalgae cultivation, microalgal-biofilm-based cultivation system has been advocated as a solution toward a more sustainable and resource friendlier system for microalgal biomass production. Algal-derived extracellular polymeric substances (EPS) form cohesive network to interconnect the cells and substrates; however, their interactions within the biofilm are poorly understood. This scenario impedes the biofilm process development toward resource recovery. Herein, this review elucidates on various biofilm cultivation modes and contribution of EPS toward biofilm adhesion. Immobilized microalgae can be envisioned by the colloid interactions in terms of a balance of both dispersive and polar interactions among three interfaces (cells, mediums and substrates). Last portion of this review is dedicated to the future perspectives and challenges on the EPS; with regard to the biopolymers extraction, biopolymers’ functional description and cross-referencing between model biofilms and full-scale biofilm systems are evaluated. This review will serve as an informative reference for readers having interest in microalgal biofilm phenomenon by incorporating the three main players in attached cultivation systems: microalgae, EPS and supporting materials. The ability to mass produce these miniature cellular biochemical factories via immobilized biofilm technology will lay the groundwork for a more sustainable and feasible production.
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Affiliation(s)
- Yi Tong Cheah
- School of Chemical Engineering, Engineering Campus, University of Science Malaysia, Nibong Tebal, Penang, Malaysia
| | - Derek Juinn Chieh Chan
- School of Chemical Engineering, Engineering Campus, University of Science Malaysia, Nibong Tebal, Penang, Malaysia
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Fanesi A, Paule A, Bernard O, Briandet R, Lopes F. The Architecture of Monospecific Microalgae Biofilms. Microorganisms 2019; 7:microorganisms7090352. [PMID: 31540235 PMCID: PMC6780892 DOI: 10.3390/microorganisms7090352] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2019] [Revised: 09/03/2019] [Accepted: 09/06/2019] [Indexed: 11/16/2022] Open
Abstract
Microalgae biofilms have been proposed as an alternative to suspended cultures in commercial and biotechnological fields. However, little is known about their architecture that may strongly impact biofilm behavior, bioprocess stability, and productivity. In order to unravel the architecture of microalgae biofilms, four species of commercial interest were cultivated in microplates and characterized using a combination of confocal laser scanning microscopy and FTIR spectroscopy. In all the species, the biofilm biovolume and thickness increased over time and reached a plateau after seven days; however, the final biomass reached was very different. The roughness decreased during maturation, reflecting cell division and voids filling. The extracellular polymeric substances content of the matrix remained constant in some species, and increased over time in some others. Vertical profiles showed that young biofilms presented a maximum cell density at 20 μm above the substratum co-localized with matrix components. In mature biofilms, the maximum density of cells moved at a greater distance from the substratum (30–40 μm), whereas the maximum coverage of matrix components remained in a deeper layer. Carbohydrates and lipids were the main macromolecules changing during biofilm maturation. Our results revealed that the architecture of microalgae biofilms is species-specific. However, time similarly affects the structural and biochemical parameters.
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Affiliation(s)
- Andrea Fanesi
- Laboratoire Génie des Procédés et Matériaux (LGPM), CentraleSupélec, Université Paris-Saclay, 91190 Gif-sur-Yvette, France.
| | - Armelle Paule
- Laboratoire Génie des Procédés et Matériaux (LGPM), CentraleSupélec, Université Paris-Saclay, 91190 Gif-sur-Yvette, France.
| | - Olivier Bernard
- Université Côte d'Azur, Inria, BIOCORE, BP 93, 06902 Sophia Antipolis Cedex, France.
| | - Romain Briandet
- Micalis Institute, INRA, AgroParisTech, Université Paris-Saclay, 78350 Jouy-en-Josas, France.
| | - Filipa Lopes
- Laboratoire Génie des Procédés et Matériaux (LGPM), CentraleSupélec, Université Paris-Saclay, 91190 Gif-sur-Yvette, France.
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Yu GH, Tang Z, Xu YC, Shen QR. Multiple fluorescence labeling and two dimensional FTIR-13C NMR heterospectral correlation spectroscopy to characterize extracellular polymeric substances in biofilms produced during composting. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2011; 45:9224-9231. [PMID: 21910500 DOI: 10.1021/es201483f] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
Knowledge on the structure and function of extracellular polymeric substances (EPS) in biofilms is essential for understanding biodegradation processes. Herein, a novel method based on multiple fluorescence labeling and two-dimensional (2D) FTIR-(13)C NMR heterospectral correlation spectroscopy was developed to gain insight on the composition, architecture, and function of EPS in biofilms during composting. Compared to other environmental biofilms, biofilms in the thermophilic (>55 °C) and cooling (mature) stage of composting have distinct characteristics. The results of multiple fluorescence labeling demonstrated that biofilms were distributed in clusters during the thermophilic stage (day 14), and dead cells were detected. In the mature stage (day 26), the biofilm formed a continuous layer with a thickness of approximately 20-100 μm around the compost, and recolonization of cells at the surface of the compost was easily observed. Through 2D FTIR-(13)C NMR correlation heterospectral spectroscopy, the following trend in the ease of the degradation of organic compounds was observed: heteropolysaccharides > cellulose > amide I in proteins. And proteins and cellulose showed significantly more degradation than heteropolysaccharides. In summary, the combination of multiple fluorescence labeling and 2D correlation spectroscopy is a promising approach for the characterization of EPS in biofilms.
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Affiliation(s)
- Guang-Hui Yu
- Jiangsu Key Lab for Organic Solid Waste Utilization, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, People's Republic of China
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A magnetic resonance-compatible perfusion bioreactor system for three-dimensional human mesenchymal stem cell construct development. Chem Eng Sci 2011. [DOI: 10.1016/j.ces.2011.05.046] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Bester E, Kroukamp O, Hausner M, Edwards E, Wolfaardt G. Biofilm form and function: carbon availability affects biofilm architecture, metabolic activity and planktonic cell yield. J Appl Microbiol 2010; 110:387-98. [DOI: 10.1111/j.1365-2672.2010.04894.x] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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