|
1
|
Hidayat Y, Rahmawati F, Nurcahyo IF, Prasetyo N, Pranowo HD. Hybrid Forces Molecular Dynamics on the Lability, Dynamics and “Structure Breaking Effect” of Cs+ in Liquid Ammonia. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2021. [DOI: 10.1246/bcsj.20200218] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Yuniawan Hidayat
- Department of Chemistry, Faculty of Mathematics and Sciences, Sebelas Maret University, Jl. Ir Sutami 36A Surakarta, 57126, Indonesia
- Austria-Indonesia Centre (AIC) for Computational Chemistry, Gadjah Mada University, Jl. Sekip Utara, Yogyakarta, 55281, Indonesia
| | - Fitria Rahmawati
- Department of Chemistry, Faculty of Mathematics and Sciences, Sebelas Maret University, Jl. Ir Sutami 36A Surakarta, 57126, Indonesia
| | - IF Nurcahyo
- Department of Chemistry, Faculty of Mathematics and Sciences, Sebelas Maret University, Jl. Ir Sutami 36A Surakarta, 57126, Indonesia
| | - Niko Prasetyo
- Department of Chemistry, Faculty of Mathematics and Natural Sciences, Gadjah Mada University, Jl. Sekip Utara, Yogyakarta, 55281, Indonesia
- Austria-Indonesia Centre (AIC) for Computational Chemistry, Gadjah Mada University, Jl. Sekip Utara, Yogyakarta, 55281, Indonesia
| | - Harno Dwi Pranowo
- Department of Chemistry, Faculty of Mathematics and Natural Sciences, Gadjah Mada University, Jl. Sekip Utara, Yogyakarta, 55281, Indonesia
- Austria-Indonesia Centre (AIC) for Computational Chemistry, Gadjah Mada University, Jl. Sekip Utara, Yogyakarta, 55281, Indonesia
| |
Collapse
|
|
2
|
|
|
3
|
Exploring preferential solvation, structure and dynamical properties or Rb+ in aqueous ammonia solution using ab initio Quantum Mechanical Charge Field (QMCF). J Mol Liq 2020. [DOI: 10.1016/j.molliq.2019.112027] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
|
4
|
Zhang B, Altarawy D, Barnes T, Turney JM, Schaefer HF. Janus: An Extensible Open-Source Software Package for Adaptive QM/MM Methods. J Chem Theory Comput 2019; 15:4362-4373. [DOI: 10.1021/acs.jctc.9b00182] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Boyi Zhang
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia 30602, United States
| | - Doaa Altarawy
- The Molecular Sciences Software Institute, Virginia Tech, Blacksburg, Virginia 24060, United States
- Department of Computer and Systems Engineering, Alexandria University, Alexandria 21544, Egypt
| | - Taylor Barnes
- The Molecular Sciences Software Institute, Virginia Tech, Blacksburg, Virginia 24060, United States
| | - Justin M. Turney
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia 30602, United States
| | - Henry F. Schaefer
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia 30602, United States
| |
Collapse
|
|
5
|
Han P, Li W, Tian H, Gao X, Ding R, Xiong C, Chen C. Designing and fabricating of time-depend self-strengthening inhibitor film: Synergistic inhibition of sodium dodecyl sulfate and 4-mercaptopyridine for mild steel. J Mol Liq 2018. [DOI: 10.1016/j.molliq.2018.07.087] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
|
|
6
|
In Oh M, Paliy M, Consta S. “Star” morphologies of charged nanodrops comprised of conformational isomers. J Chem Phys 2018; 148:024307. [DOI: 10.1063/1.5011989] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023] Open
Affiliation(s)
- Myong In Oh
- Department of Chemistry, The University of Western Ontario, London, Ontario N6A 5B7, Canada
| | - Maxim Paliy
- Department of Chemistry, The University of Western Ontario, London, Ontario N6A 5B7, Canada
| | - Styliani Consta
- Department of Chemistry, The University of Western Ontario, London, Ontario N6A 5B7, Canada
| |
Collapse
|
|
7
|
Characterization of the F−-water and Cl−-water hydrogen bonds in aqueous solution: From “interior” (I) to “surface” (S) states. J Mol Liq 2017. [DOI: 10.1016/j.molliq.2017.10.057] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
|
|
8
|
Chaiyasit P, Tongraar A, Kerdcharoen T. Characteristics of methylammonium ion (CH 3 NH 3 + ) in aqueous electrolyte solution: An ONIOM-XS MD simulation study. Chem Phys 2017. [DOI: 10.1016/j.chemphys.2017.06.012] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
|
|
9
|
Characteristics of K + and Rb + as “structure-breaking” ions in dilute aqueous solution: Insights from ONIOM-XS MD simulations. Chem Phys 2016. [DOI: 10.1016/j.chemphys.2016.09.028] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
|
|
10
|
Zheng M, Waller MP. Adaptive quantum mechanics/molecular mechanics methods. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2016. [DOI: 10.1002/wcms.1255] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Min Zheng
- Theoretische Organische Chemie, Organisch-Chemisches Institut and Center for Multiscale Theory and Computation; Westfälische Wilhelms-Universität Münster; 48149 Münster, Germany
| | - Mark P. Waller
- Theoretische Organische Chemie, Organisch-Chemisches Institut and Center for Multiscale Theory and Computation; Westfälische Wilhelms-Universität Münster; 48149 Münster, Germany
| |
Collapse
|
|
11
|
|
|
12
|
Sripa P, Tongraar A, Kerdcharoen T. Structure and dynamics of the Li+ hydrates: A comparative study of conventional QM/MM and ONIOM-XS MD simulations. J Mol Liq 2015. [DOI: 10.1016/j.molliq.2015.04.054] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
|
|
13
|
Kabbalee P, Sripa P, Tongraar A, Kerdcharoen T. Solvation structure and dynamics of K+ in aqueous ammonia solution: Insights from an ONIOM-XS MD simulation. Chem Phys Lett 2015. [DOI: 10.1016/j.cplett.2015.05.037] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
|