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Yang Q, Yu H, Qu Y, Zhang X, Xia R, Wang Z, Tan R, Xiong L, Xi S, Wu J, Gao Y, Zhang S, Li C. Developmental validation of the novel six-dye Goldeneye TM DNA ID System 35InDel kit for forensic application. Forensic Sci Res 2021; 7:673-684. [PMID: 36817233 PMCID: PMC9930762 DOI: 10.1080/20961790.2021.1945723] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022] Open
Abstract
Insertion/deletion polymorphisms (InDels) have been treated as a prospective and helpful genetic marker in the fields of forensic human identification, anthropology and population genetics for the past few years. In this study, we developed a six-dye multiplex typing system consisting of 34 autosomal InDels and Amelogenin for forensic application. The contained InDels were specifically selected for Chinese population with the MAF ≥ 0.25 in East Asia, which do not overlap with the markers of Investigator® DIPplex kit. The typing system was named as GoldeneyeTM DNA ID System 35InDel Kit, and a series of developmental validation studies including repeatability/reproducibility, concordance, accuracy, sensitivity, stability, species specificity and population genetics were conducted on this kit. We confirmed that the 35InDel kit is precise, sensitive, species specific and robust for forensic practice. Moreover, the 35InDel kit is capable of typing DNA extracted from forensic routine case-type samples as well as degraded samples and mixture samples. All markers are proved to be highly polymorphic with an average observed heterozygosity (He) of 0.4582. The combined power of discrimination (CPD) is 0.999 999 999 999 978 and the combined power of exclusion in duos (CPED) and trios (CPET) are 0.978 837 and 0.999573, respectively, which are higher than those of the Investigator® DIPplex kit. Thus, the GoldeneyeTM DNA ID System 35InDel kit is suitable for forensic human identification and could serve as a supplementary typing system for paternity testing. Supplemental data for this article is available online at https://doi.org/10.1080/20961790.2021.1945723 .
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Affiliation(s)
- Qi Yang
- Shanghai Key Laboratory of Forensic Medicine, Shanghai Forensic Service Platform, Academy of Forensic Sciences, Ministry of Justice, Shanghai, China,Department of Forensic Science, Medical School of Soochow University, Suzhou, China
| | - Huan Yu
- Shanghai Key Laboratory of Forensic Medicine, Shanghai Forensic Service Platform, Academy of Forensic Sciences, Ministry of Justice, Shanghai, China,Department of Forensic Science, Medical School of Soochow University, Suzhou, China
| | - Yiling Qu
- Shanghai Key Laboratory of Forensic Medicine, Shanghai Forensic Service Platform, Academy of Forensic Sciences, Ministry of Justice, Shanghai, China,Department of Forensic Science, Medical School of Soochow University, Suzhou, China
| | - Xiaochun Zhang
- Shanghai Key Laboratory of Forensic Medicine, Shanghai Forensic Service Platform, Academy of Forensic Sciences, Ministry of Justice, Shanghai, China,Department of Forensic Science, Medical School of Soochow University, Suzhou, China
| | - Ruocheng Xia
- Shanghai Key Laboratory of Forensic Medicine, Shanghai Forensic Service Platform, Academy of Forensic Sciences, Ministry of Justice, Shanghai, China,Department of Forensic Medicine, School of Basic Medical Science, Wenzhou Medical University, Wenzhou, China
| | - Ziwei Wang
- Shanghai Key Laboratory of Forensic Medicine, Shanghai Forensic Service Platform, Academy of Forensic Sciences, Ministry of Justice, Shanghai, China,Department of Forensic Science, Medical School of Soochow University, Suzhou, China
| | - Rui Tan
- Shanghai Key Laboratory of Forensic Medicine, Shanghai Forensic Service Platform, Academy of Forensic Sciences, Ministry of Justice, Shanghai, China,Department of Forensic Science, Medical School of Soochow University, Suzhou, China
| | - Lei Xiong
- Shanghai Key Laboratory of Forensic Medicine, Shanghai Forensic Service Platform, Academy of Forensic Sciences, Ministry of Justice, Shanghai, China,School of Basic Medicine, Inner Mongolia Medical University, Hohhot, China
| | - Shihan Xi
- Shanghai Key Laboratory of Forensic Medicine, Shanghai Forensic Service Platform, Academy of Forensic Sciences, Ministry of Justice, Shanghai, China,Clinical Medical School, Inner Mongolia University for the Nationalities, Tongliao, China
| | - Jun Wu
- PEOPLESPOTINC, Beijing, China
| | - Yuzhen Gao
- Department of Forensic Science, Medical School of Soochow University, Suzhou, China
| | - Suhua Zhang
- Shanghai Key Laboratory of Forensic Medicine, Shanghai Forensic Service Platform, Academy of Forensic Sciences, Ministry of Justice, Shanghai, China,CONTACT Suhua Zhang ; Chengtao Li
| | - Chengtao Li
- Shanghai Key Laboratory of Forensic Medicine, Shanghai Forensic Service Platform, Academy of Forensic Sciences, Ministry of Justice, Shanghai, China,Department of Forensic Science, Medical School of Soochow University, Suzhou, China
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Jin X, Cui W, Chen C, Guo Y, Zhang X, Xing G, Lan J, Zhu B. Developing and population analysis of a new multiplex panel of 18 microhaplotypes and compound markers using next generation sequencing and its application in the Shaanxi Han population. Electrophoresis 2020; 41:1230-1237. [DOI: 10.1002/elps.201900451] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2019] [Revised: 03/03/2020] [Accepted: 04/17/2020] [Indexed: 01/05/2023]
Affiliation(s)
- Xiao‐Ye Jin
- Key Laboratory of Shaanxi Province for Craniofacial Precision Medicine Research, College of Stomatology Xi'an Jiaotong University Xi'an P. R. China
- College of Forensic Science Xi'an Jiaotong University Health Science Center Xi'an P. R. China
- Clinical Research Center of Shaanxi Province for Dental and Maxillofacial Diseases, College of Stomatology Xi'an Jiaotong University Xi'an P. R. China
| | - Wei Cui
- Key Laboratory of Shaanxi Province for Craniofacial Precision Medicine Research, College of Stomatology Xi'an Jiaotong University Xi'an P. R. China
- College of Forensic Science Xi'an Jiaotong University Health Science Center Xi'an P. R. China
- Clinical Research Center of Shaanxi Province for Dental and Maxillofacial Diseases, College of Stomatology Xi'an Jiaotong University Xi'an P. R. China
| | - Chong Chen
- Key Laboratory of Shaanxi Province for Craniofacial Precision Medicine Research, College of Stomatology Xi'an Jiaotong University Xi'an P. R. China
- College of Forensic Science Xi'an Jiaotong University Health Science Center Xi'an P. R. China
- Clinical Research Center of Shaanxi Province for Dental and Maxillofacial Diseases, College of Stomatology Xi'an Jiaotong University Xi'an P. R. China
| | - Yu‐Xin Guo
- Key Laboratory of Shaanxi Province for Craniofacial Precision Medicine Research, College of Stomatology Xi'an Jiaotong University Xi'an P. R. China
- College of Forensic Science Xi'an Jiaotong University Health Science Center Xi'an P. R. China
- Clinical Research Center of Shaanxi Province for Dental and Maxillofacial Diseases, College of Stomatology Xi'an Jiaotong University Xi'an P. R. China
| | - Xing‐Ru Zhang
- Key Laboratory of Shaanxi Province for Craniofacial Precision Medicine Research, College of Stomatology Xi'an Jiaotong University Xi'an P. R. China
- College of Forensic Science Xi'an Jiaotong University Health Science Center Xi'an P. R. China
- Clinical Research Center of Shaanxi Province for Dental and Maxillofacial Diseases, College of Stomatology Xi'an Jiaotong University Xi'an P. R. China
| | - Guo‐Hui Xing
- People's Hospital of Arong Banner Hulunbuir P. R. China
| | - Jiang‐Wei Lan
- Multi‐Omics Innovative Research Center of Forensic Identification Department of Forensic Genetics, School of Forensic Medicine Southern Medical University Guangzhou P. R. China
| | - Bo‐Feng Zhu
- Key Laboratory of Shaanxi Province for Craniofacial Precision Medicine Research, College of Stomatology Xi'an Jiaotong University Xi'an P. R. China
- Clinical Research Center of Shaanxi Province for Dental and Maxillofacial Diseases, College of Stomatology Xi'an Jiaotong University Xi'an P. R. China
- Multi‐Omics Innovative Research Center of Forensic Identification Department of Forensic Genetics, School of Forensic Medicine Southern Medical University Guangzhou P. R. China
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Zhang S, Zhu Q, Chen X, Zhao Y, Zhao X, Yang Y, Gao Z, Fang T, Wang Y, Zhang J. Forensic applicability of multi-allelic InDels with mononucleotide homopolymer structures. Electrophoresis 2018; 39:2136-2143. [PMID: 29704251 DOI: 10.1002/elps.201700468] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2017] [Revised: 04/10/2018] [Accepted: 04/19/2018] [Indexed: 12/12/2022]
Affiliation(s)
- Shu Zhang
- West China School of Basic Medical Sciences and Forensic Medicine; Sichuan University; Chengdu Sichuan P. R. China
| | - Qiang Zhu
- West China School of Basic Medical Sciences and Forensic Medicine; Sichuan University; Chengdu Sichuan P. R. China
| | - Xiaogang Chen
- West China School of Basic Medical Sciences and Forensic Medicine; Sichuan University; Chengdu Sichuan P. R. China
| | - Yuancun Zhao
- West China School of Basic Medical Sciences and Forensic Medicine; Sichuan University; Chengdu Sichuan P. R. China
| | - Xiaohong Zhao
- West China School of Basic Medical Sciences and Forensic Medicine; Sichuan University; Chengdu Sichuan P. R. China
| | - Yiwen Yang
- West China School of Basic Medical Sciences and Forensic Medicine; Sichuan University; Chengdu Sichuan P. R. China
| | - Zehua Gao
- West China School of Basic Medical Sciences and Forensic Medicine; Sichuan University; Chengdu Sichuan P. R. China
| | - Ting Fang
- West China School of Basic Medical Sciences and Forensic Medicine; Sichuan University; Chengdu Sichuan P. R. China
| | - Yufang Wang
- West China School of Basic Medical Sciences and Forensic Medicine; Sichuan University; Chengdu Sichuan P. R. China
| | - Ji Zhang
- West China School of Basic Medical Sciences and Forensic Medicine; Sichuan University; Chengdu Sichuan P. R. China
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