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Preparation, crystal structure, luminescence and Hirshfeld surface of hydroxynaphthene-based compounds. J Mol Struct 2023. [DOI: 10.1016/j.molstruc.2022.134043] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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2
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Zhang L, Zhou J, Wu Y, Wang P, Jin S, Lu Y, Wang D. Noncovalent-bonded 2D-3D supramolecular adducts from 6-methylpyridine-3-carboxamide and carboxylic acids. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133256] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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3
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4
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Preparation and structure analysis of non-covalent interactions mediated 2D-3D supramolecular adducts from 6-methylnicotinamide and carboxylic acids. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133135] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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5
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Ten Salts and One Co-crystal Fabricated from 4-methylbenzo[d]thiazol-2-amine and Acids through Combination of Classical H-bonds and Weak Noncovalent Interactions. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.132770] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
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6
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Wu R, Chen Z, Gao X, Chen X, Jin S, He L, Chen B, Wang D. Preparation and characterization of eight crystalline supramolecular salts from 4-dimethylaminopyridine and aromatic acids. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.131088] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
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7
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Zhang Y, Zhang Y, Ye W, Li Z, Jin S, Guo M, Bai L, Wang D. Eleven adducts constructed from 4-methylbenzo[d]thiazol-2-amine and organic acids via coupling of classical H-bonds and noncovalent interactions. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.130614] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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8
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Structures of eleven organic acid-base adducts from 2-aminobenzothiazole/2-aminothiazole and acidic compounds. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.130340] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
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9
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Rajkumar M, Parameswaran K, Suresh E, Chandramohan A. Supramolecular synthons in 4-chloroanilinium-5-sulfosalicylate monohydrate: In vitro antioxidant and antimicrobial studies. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.130170] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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10
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Eleven adducts from 4-methylbenzo[d]thiazol-2-amineand Carboxylic Acids via Classical H-bonds and Noncovalent Associations. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2020.129819] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
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11
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Chen J, Li J, Fu X, Xie Q, Zeng T, Jin S, Xu W, Wang D. Structures of ten organic salts from 2-aminothiazole/2-aminobenzothiazole and acidic compounds. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2019.127491] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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12
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Zeng T, Lu Y, Jin S, Sun L, Zhong B, Wang D, Wang J, Liu H. Noncovalent bonded 3D structures of eight anhydrous organic salts from tris(hydroxymethyl)aminomethane and organic acids. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2018.12.044] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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13
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Yang Q, Wang L, He J, Wei H, Yang Z, Huang X. Arabinogalactan Proteins Are the Possible Extracellular Molecules for Binding Exogenous Cerium(III) in the Acidic Environment Outside Plant Cells. FRONTIERS IN PLANT SCIENCE 2019; 10:153. [PMID: 30842782 PMCID: PMC6391350 DOI: 10.3389/fpls.2019.00153] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2018] [Accepted: 01/29/2019] [Indexed: 05/29/2023]
Abstract
Rare earth elements [REE(III)] increasingly accumulate in the atmosphere and can be absorbed by plant leaves. Our previous study showed that after treatment of REE(III) on plant, REE(III) is first bound by some extracellular molecules of plant cells, and then the endocytosis of leaf cells will be initiated, which terminates the endocytic inertia of leaf cells. Identifying the extracellular molecules for binding REE(III) is the crucial first step to elucidate the mechanism of REE(III) initiating the endocytosis in leaf cells. Unfortunately, the molecules are unknown. Here, cerium(III) [Ce(III)] and Arabidopsis served as a representative of REE(III) and plants, respectively. By using interdisciplinary methods such as confocal laser scanning microscopy, immune-Au and fluorescent labeling, transmission electron microscope (TEM), X-ray photoelectron spectroscopy (XPS), ultraviolet-visible spectroscopy, circular dichroism spectroscopy, fluorescent spectrometry and molecular dynamics simulation, we obtained two important discoveries: first, the arabinogalactan proteins (AGP) inside leaf cells were sensitively increased in protein expression and recruited onto the plasma membrane; second, to verify whether AGP can bind to Ce(III) in the acidic environment outside leaf cells, by choosing fasciclin-like AGP11 (AtFLA11) as a representative of AGP, we found that Ce(III) can form stable [Ce(H2O)7](III)-AtFLA11 complexes with an apparent binding constant of 1.44 × 10-6 in simulated acidic environment outside leaf cells, in which the secondary and tertiary structure of AtFLA11 was changed. The structural change in AtFLA11 and the interaction between AtFLA11 and Ce(III) were enhanced with increasing the concentration of Ce(III). Therefore, AtFLA11 can serve as Lewis bases to coordinately bind to Ce(III), which broke traditional chemical principle. The results confirmed that AGP can be the possible extracellular molecules for binding to exogenous Ce(III) outside leaf cells, and provided references for elucidating the mechanism of REE(III) initiating the endocytosis in leaf cells.
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Affiliation(s)
- Qing Yang
- National and Local Joint Engineering Research Center of Biomedical Functional Materials, Jiangsu Collaborative Innovation Center of Biomedical Functional Materials, School of Chemistry and Materials Science, Nanjing Normal University, Nanjing, China
| | - Lihong Wang
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, China
| | - Jingfang He
- National and Local Joint Engineering Research Center of Biomedical Functional Materials, Jiangsu Collaborative Innovation Center of Biomedical Functional Materials, School of Chemistry and Materials Science, Nanjing Normal University, Nanjing, China
| | - Haiyan Wei
- National and Local Joint Engineering Research Center of Biomedical Functional Materials, Jiangsu Collaborative Innovation Center of Biomedical Functional Materials, School of Chemistry and Materials Science, Nanjing Normal University, Nanjing, China
| | - Zhenbiao Yang
- Center for Plant Cell Biology, Institute for Integrative Genome Biology, University of California, Riverside, Riverside, CA, United States
| | - Xiaohua Huang
- National and Local Joint Engineering Research Center of Biomedical Functional Materials, Jiangsu Collaborative Innovation Center of Biomedical Functional Materials, School of Chemistry and Materials Science, Nanjing Normal University, Nanjing, China
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14
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Sun L, Hu K, Jin S, Lu Y, Xu C, Liu B, Wang D, Xia G. Single-crystal and molecular structures of five hydrogen-bonding supramolecular salts based on 4-aminobenzoic acid, 2-aminobenzoic acid and acidic components. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2018.10.034] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
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15
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Syntheses and structure characterization of ten acid-base hybrid crystals based on imidazole derivatives and mineral acids. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2017.12.041] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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16
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Yang Q, Wang L, He J, Yang Z, Huang X. Direct imaging of how lanthanides break the normal evolution of plants. J Inorg Biochem 2018; 182:158-169. [PMID: 29482161 DOI: 10.1016/j.jinorgbio.2018.01.020] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2017] [Revised: 01/09/2018] [Accepted: 01/30/2018] [Indexed: 10/18/2022]
Abstract
After rare earth elements [REE(III)] are anchored outside of the plasma membrane, REE(III) break plant evolution to initiate leaf cell endocytosis, which finally affects plant growth. However, the molecule for anchoring REE(III) in the acidic environment outside of the plasma membrane is not clear, which is crucial for exploring the mechanism of REE(III) breaking plant evolution. Here, lanthanum(III) [La(III)] and terbium(III) [Tb(III)] were respectively served as a representative of REE(III) without and with f electrons, and Arabidopsis was served as a representative of plants, cellular and molecular basis for arabinogalactan proteins (AGP) anchoring REE(III) outside of the plasma membrane was investigated. By using interdisciplinary methods, when REE(III) initiated leaf cell phagocytosis, we observed the increase in the expression of AGP and their migration to the outside of the plasma membrane. In the acidic environment outside of the plasma membrane, Tb(III) formed more stable Lewis acid-base [REE(III)-AGP] complexes with a higher apparent binding constant (1.51 × 10-6) than La(III) (1.24 × 10-6). In REE(III)-AGP complexes, the bond lengths of REE(III)-O were in normal range and H-bonds were strong H-bonds. The formation of REE(III)-AGP complexes sequentially disturbed the secondary and tertiary structure of AGP, which were enhanced with increasing the concentration of REE(III), and Tb(III) caused stronger structural changes than La(III). Hence, AGP could be molecules for anchoring REE(III) outside of the plasma membrane. The results of this study are direct imaging of how lanthanides break the normal evolution of plants, and can serve as an important guidance for investigating mechanism of lanthanides in organisms.
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Affiliation(s)
- Qing Yang
- National and Local Joint Engineering Research Center of Biomedical Functional Materials, Jiangsu Collaborative Innovation Center of Biomedical Functional Materials, School of Chemistry and Materials Sciences, Nanjing Normal University, Nanjing 210046, China
| | - Lihong Wang
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi 214122, China
| | - Jingfang He
- National and Local Joint Engineering Research Center of Biomedical Functional Materials, Jiangsu Collaborative Innovation Center of Biomedical Functional Materials, School of Chemistry and Materials Sciences, Nanjing Normal University, Nanjing 210046, China
| | - Zhenbiao Yang
- Center for Plant Cell Biology, Institute for Integrative Genome Biology, University of California, Riverside, CA 92521, USA
| | - Xiaohua Huang
- National and Local Joint Engineering Research Center of Biomedical Functional Materials, Jiangsu Collaborative Innovation Center of Biomedical Functional Materials, School of Chemistry and Materials Sciences, Nanjing Normal University, Nanjing 210046, China.
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17
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Scilabra P, Terraneo G, Resnati G. Fluorinated elements of Group 15 as pnictogen bond donor sites. J Fluor Chem 2017. [DOI: 10.1016/j.jfluchem.2017.10.002] [Citation(s) in RCA: 60] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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18
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Comparison of Three Solid Phase Materials for the Extraction of Carboxylic Acids from River Water Followed by 2D GC × GC-TOFMS Determination. Int J Anal Chem 2016; 2016:6396938. [PMID: 27274730 PMCID: PMC4870361 DOI: 10.1155/2016/6396938] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2015] [Revised: 11/29/2015] [Accepted: 01/13/2016] [Indexed: 11/17/2022] Open
Abstract
The extraction and determination of aliphatic and aromatic carboxylic acids as well as their influence on the aromaticity and molecularity relationship of natural organic matter (NOM) in water are reported in this study. Three solid phase extraction (SPE) sorbents were used and their extraction efficiencies evaluated after chromatographic determinations (using gas chromatography with a time of flight mass spectrometer (GC × GC-TOFMS) and liquid chromatography with organic carbon detector (LC-OCD)). More than 42 carboxylic acids were identified in raw water from the Vaal River, which feeds the Lethabo Power Generation Station, South Africa, with cooling water. The aromatic carboxylic acid efficiency (28%) was achieved by using Strata™ X SPE while the highest aliphatic carboxylic acid efficiency (92.08%) was achieved by silica SPE. The hydrophobic nature of NOM in water depends on the nature of organic compounds in water, whether aromatic or aliphatic. The LC-OCD was used to assess the hydrophobicity levels of NOM as a function of these carboxylic acids in cooling water. The LC-OCD results showed that the aromatic nature of NOM in SPE filtered water followed the order Silica>Strata X>C-18. From the results, the hydrophobicity degree of the samples depended on the type and number of carboxylic acids that were removed by the SPE cartridges.
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Gao X, Zhang H, Wen X, Liu B, Jin S, Wang D. Structure of seven organic salts assembled from 2,6-diaminopyridine with monocarboxylic acids, dicarboxylic acids, and tetracarboxylic acids. J Mol Struct 2015. [DOI: 10.1016/j.molstruc.2015.03.053] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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20
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Six new metal(II) complexes with 3D network structures based on carboxylate and hexamethylenetetramine: Syntheses and structures. Polyhedron 2015. [DOI: 10.1016/j.poly.2015.04.013] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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21
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Pang Y, Xing P, Geng X, Zhu Y, Liu F, Wang L. Supramolecular assemblies of 2-hydroxy-3-naphthoic acid and N-heterocycles via various strong hydrogen bonds and weak X⋯π (X = C–H, π) interactions. RSC Adv 2015. [DOI: 10.1039/c5ra03837e] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Hydrogen bonds and weak X⋯π (X = C–H, π) interactions in a series of multi-component molecules constructed from 2-hydroxy-3-naphthoic acid with N-heterocycles are discussed in context.
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Affiliation(s)
- Yanyan Pang
- Laboratory of Inorganic Synthesis and Applied Chemistry
- College of Chemistry and Molecular Engineering
- Qingdao University of Science and Technology
- Qingdao 266042
- P. R. China
| | - Peiqi Xing
- Laboratory of Inorganic Synthesis and Applied Chemistry
- College of Chemistry and Molecular Engineering
- Qingdao University of Science and Technology
- Qingdao 266042
- P. R. China
| | - Xiujuan Geng
- Laboratory of Inorganic Synthesis and Applied Chemistry
- College of Chemistry and Molecular Engineering
- Qingdao University of Science and Technology
- Qingdao 266042
- P. R. China
| | - Yujing Zhu
- Laboratory of Inorganic Synthesis and Applied Chemistry
- College of Chemistry and Molecular Engineering
- Qingdao University of Science and Technology
- Qingdao 266042
- P. R. China
| | - Faqian Liu
- Laboratory of Inorganic Synthesis and Applied Chemistry
- College of Chemistry and Molecular Engineering
- Qingdao University of Science and Technology
- Qingdao 266042
- P. R. China
| | - Lei Wang
- Laboratory of Inorganic Synthesis and Applied Chemistry
- College of Chemistry and Molecular Engineering
- Qingdao University of Science and Technology
- Qingdao 266042
- P. R. China
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Reyes-Martínez R, Carballo RM, Mena-Rejón GJ, Hernández-Ortega S, Cáceres-Castillo D. Bis(2-amino-4-phenyl-1,3-thia-zol-3-ium) tetra-chlorido-palladate(II). Acta Crystallogr Sect E Struct Rep Online 2014; 70:m295. [PMID: 25249879 PMCID: PMC4158524 DOI: 10.1107/s1600536814015360] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2014] [Accepted: 07/01/2014] [Indexed: 11/10/2022]
Abstract
The title compound, (C9H9N2S)2[PdCl4], consists of two monoprotonated 2-amino-4-phenyl-1,3-thia-zole molecules and one tetra-chlorido-palladate anion. The organic molecules exhibit a dihedral angle between the main rings planes of 31.82 (9)°. In the anion, the Pd(II) atom is located on a crystallographic centre of symmetry with a square-planar geometry. In the crystal, the anions and cations are connected through bifurcated N-H⋯Cl hydrogen bonds, and these inter-actions lead to hydrogen-bonded tapes of cations and anions along [100].
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Affiliation(s)
- Reyna Reyes-Martínez
- Facultad de Química, Universidad Autónoma de Yucatán, Calle 41 No. 421, Col. Industrial, CP97150, Mérida, Yucatán, Mexico
| | - Rubén M Carballo
- Facultad de Química, Universidad Autónoma de Yucatán, Calle 41 No. 421, Col. Industrial, CP97150, Mérida, Yucatán, Mexico
| | - Gonzalo J Mena-Rejón
- Facultad de Química, Universidad Autónoma de Yucatán, Calle 41 No. 421, Col. Industrial, CP97150, Mérida, Yucatán, Mexico
| | - Simón Hernández-Ortega
- Instituto de Química, Universidad Nacional Autónoma de México, Circuito exterior, Ciudad Universitaria, México, DF, 04510, Mexico
| | - David Cáceres-Castillo
- Facultad de Química, Universidad Autónoma de Yucatán, Calle 41 No. 421, Col. Industrial, CP97150, Mérida, Yucatán, Mexico
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