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Tataringa G, Tuchilus C, Ahmed M, Ahmed S, Bhat AR, Ben Hadda T, Zbancioc AM, Fahelelbom KM. Discovery of new molecular hybrid derivatives with coumarin scaffold bearing pyrazole/oxadiazole moieties: Molecular docking, POM analyses, in silico pharmacokinetics and in vitro antimicrobial evaluation with identification of potent antitumor pharmacophore sites. Bioorg Chem 2024; 153:107761. [PMID: 39241586 DOI: 10.1016/j.bioorg.2024.107761] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2024] [Revised: 08/21/2024] [Accepted: 08/24/2024] [Indexed: 09/09/2024]
Abstract
This synthetic organic methodology involves the creation of novel coumarin-based hybrids of series (1-4) with pyrazole ring and (5-8) with oxadiazole moiety. The targeted compounds were tested for In vitro Antimicrobial efficacy against Staphylococcus aureus, Escherichia coli, Pseudomonas aeruginosa, and Candida albicans pathogenic microbes using disc diffusion and broth microdilution with ciprofloxacin and fluconazole as reference standards. Density functional theory (DFT) studies were used to study atomic structure and reactivity, including absolute electronegativity (χ), electrophilicity (ω), electron acceptor (ω+), donor capabilities (ω-), electron affinity (EA), energy gap (ΔE), global hardness (η), global softness (S), and ionisation potential (IP) and FMOs, NBOs, MEP, and Mulliken Charge analysis. The POM tests found three integrated pharmacophore sites with antibacterial, antiviral, and anticancer activities. Molecular docking studies are also used to determine the S. aureus nucleoside diphosphate kinase receptor's affinity and mode of action for the synthesized drugs. In silico analysis of thermodynamic and therapeutic effectiveness properties, including Lipinski's 'rule of five', Veber's rule, and ADME properties, predicted toxicity-free, non-carcinogenic, and risk-free oral administration of the synthesized complexes.
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Affiliation(s)
| | | | - Mukhtar Ahmed
- Department of Zoology, College of Science, King Saud University, P. O. Box 2455, Riyadh 11451, Kingdom of Saudi Arabia
| | - Sumeer Ahmed
- Post-Graduate and Research Department of Chemistry, The New College (Autonomous), University of Madras, Chennai 600 014, India.
| | - Ajmal R Bhat
- Department of Chemistry, RTM Nagpur University, Nagpur 440 033, India.
| | - Taibi Ben Hadda
- Euromed Research Center, Euromed Faculty of Pharmacy and School of Engineering in Biomedical and Biotechnology, Euromed University of Fes (UEMF), Meknes Road, Fez 30000, Morocco
| | | | - Khairi M Fahelelbom
- Department of Pharmaceutical Science, College of Pharmacy, Al Ain University, Al Ain, United Arab Emirates
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Costa R, Al-Qurashi OS, Wazzan N, Pogrebnoi A, Pogrebnaya T. Designed complexes based on betanidin and L0 Dyes for DSSCs: thermodynamic and optoelectronic properties from DFT study. MOLECULAR SIMULATION 2022. [DOI: 10.1080/08927022.2022.2042531] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
- Rene Costa
- Department of Materials and Energy Science and Engineering, School of Materials, Energy, Water and Environmental Sciences, The Nelson Mandela African Institution of Science and Technology, Arusha, Tanzania
- Department of Physical and Environmental Sciences, Faculty of Science, Technology and Environmental Studies, The Open University of Tanzania, Dar es Salaam, Tanzania
- Tabora Regional Centre, The Open University of Tanzania, Tabora, Tanzania
| | - Ohoud S. Al-Qurashi
- Department of Chemistry, Faculty of Science, University of Jeddah, Jeddah, Saudi Arabia
| | - Nuha Wazzan
- Department of Chemistry, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia
| | - Alexander Pogrebnoi
- Department of Materials and Energy Science and Engineering, School of Materials, Energy, Water and Environmental Sciences, The Nelson Mandela African Institution of Science and Technology, Arusha, Tanzania
| | - Tatiana Pogrebnaya
- Department of Materials and Energy Science and Engineering, School of Materials, Energy, Water and Environmental Sciences, The Nelson Mandela African Institution of Science and Technology, Arusha, Tanzania
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Costa R, Pogrebnoi A, Pogrebnaya T. Betanidin isomerisation and decarboxylation, thermodynamic and charge transfer dye properties towards dye sensitised solar cells application. J PHYS ORG CHEM 2021. [DOI: 10.1002/poc.4185] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Rene Costa
- Department of Materials and Energy Science and Engineering, School of Materials, Energy, Water and Environmental Sciences The Nelson Mandela African Institution of Science and Technology Arusha Tanzania
- Department of Physical Sciences, Faculty of Science, Technology and Environmental Studies The Open University of Tanzania Dar es Salaam Tanzania
- Tabora Regional Centre The Open University of Tanzania Tabora Tanzania
| | - Alexander Pogrebnoi
- Department of Materials and Energy Science and Engineering, School of Materials, Energy, Water and Environmental Sciences The Nelson Mandela African Institution of Science and Technology Arusha Tanzania
| | - Tatiana Pogrebnaya
- Department of Materials and Energy Science and Engineering, School of Materials, Energy, Water and Environmental Sciences The Nelson Mandela African Institution of Science and Technology Arusha Tanzania
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Aswaniya K, Raj MJ, Gowri S, Vinitha G. Growth, structural, hirshfeld surface analysis, DFT and Z-scan technique of hybrid single crystal of piperazinium perchlorate. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2020.128460] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Demir Kanmazalp S, Başaran E, Karaküçük-Iyidoğan A, Oruç-Emre EE, Dege N. X-ray structures and spectroscopic properties of chiral thiosemicarbazides as studied by computational calculations. PHOSPHORUS SULFUR 2017. [DOI: 10.1080/10426507.2017.1289380] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
| | - Eyüp Başaran
- Department of Chemistry, Faculty of Science and Arts, Gaziantep University, Gaziantep, Turkey
| | | | - Emine Elçin Oruç-Emre
- Department of Chemistry, Faculty of Science and Arts, Gaziantep University, Gaziantep, Turkey
| | - Necmi Dege
- Department of Physics, Faculty of Arts and Sciences, Ondokuz Mayıs University, Kurupelit-Samsun, Turkey
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Saravanan RR, Seshadri S, Gunasekaran S, Mendoza-Meroño R, Garcia-Granda S. Conformational analysis, X-ray crystallographic, FT-IR, FT-Raman, DFT, MEP and molecular docking studies on 1-(1-(3-methoxyphenyl) ethylidene) thiosemicarbazide. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2015; 139:321-328. [PMID: 25574651 DOI: 10.1016/j.saa.2014.12.026] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/23/2014] [Revised: 11/22/2014] [Accepted: 12/10/2014] [Indexed: 06/04/2023]
Abstract
Conformational analysis, X-ray crystallographic, FT-IR, FT-Raman, DFT, MEP and molecular docking studies on 1-(1-(3-methoxyphenyl) ethylidene) thiosemicarbazide (MPET) are investigated. From conformational analysis the examination of the positions of a molecule taken and the energy changes is observed. The docking studies of the ligand MPET with target protein showed that this is a good molecule which docks well with target related to HMG-CoA. Hence MPET can be considered for developing into a potent anti-cholesterol drug. MEP assists in optimization of electrostatic interactions between the protein and the ligand. The MEP surface displays the molecular shape, size and electrostatic potential values. The optimized geometry of the compound was calculated from the DFT-B3LYP gradient calculations employing 6-31G (d, p) basis set and calculated vibrational frequencies are evaluated via comparison with experimental values.
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Affiliation(s)
- R R Saravanan
- Department of Physics, Misrimal Navajee Munoth Jain Engineering College, Thoraipakkam, Chennai 600 097, India.
| | - S Seshadri
- Department of Physics, L.N. Govt. Arts College, Ponneri, Thiruvallur 601 001, India
| | - S Gunasekaran
- Research & Development, St. Peter's University, Avadi, Chennai 600 054, India
| | - R Mendoza-Meroño
- Faculty of Chemistry, Department of Physical and Analytical Chemistry, University Oviedo, C/ Julian Claveria, 8, 33006 Oviedo, Asturias, Spain
| | - S Garcia-Granda
- Faculty of Chemistry, Department of Physical and Analytical Chemistry, University Oviedo, C/ Julian Claveria, 8, 33006 Oviedo, Asturias, Spain
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Quantum mechanical calculations and spectroscopic (FT-IR, FT-Raman and UV) investigations, molecular orbital, NLO, NBO, NLMO and MESP analysis of 4-[5-(4-methylphenyl)-3-(trifluoromethyl)-1H-pyrazol-1-yl] benzene-1-sulfonamide. J Mol Struct 2015. [DOI: 10.1016/j.molstruc.2014.10.011] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Taib LA, Faidallah HM, Şahin ZS, Asiri AM, Şahin O, Arshad MN. Synthesis, spectral analysis, X-ray crystal structures and evaluation of chemical reactivity of five new benzoindazole derivatives through experimental and theoretical studies. J Mol Struct 2014. [DOI: 10.1016/j.molstruc.2014.07.033] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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