Towards an integrated understanding of how micro scale processes shape groundwater ecosystem functions

Ecological processes differ in community assembly of Archaea, Bacteria and Eukaryotes in a biogeographical survey of groundwater habitats in the Quebec region (Canada)

Aquifers are inhabited by microorganisms from the three major domains of life: Archaea, Eukaryotes and Bacteria. Although interest in the processes that govern the assembly of these microbial communities is growing, their study is almost systematically limited to one of the three domains of life. Archaea, Bacteria and Eukaryotes are however interconnected and essential to understand the functioning of their living ecosystems. We, therefore, conducted a spatial study of the distribution of microorganisms by sampling 35 wells spread over an area of 10,000 km² in the Quebec region (Canada). The obtained data allowed us to define the impact of geographic distance and geochemical water composition on the microbial communities. A null model approach was used to infer the relative influence of stochastic and determinist ecological processes on the assembly of the microbial community from all three domains. We found that the organisms from these three groups are mainly governed by stochastic mechanisms. However, this apparent similarity does not reflect the differences in the processes that govern the phyla assembly. The results obtained highlight the importance of considering all the microorganisms without neglecting their individual specificities.

Forest damage and subsequent recovery alter the water composition in mountain lake catchments

Forest damage by insect infestation directly affects the trees themselves, but also indirectly affects water quality via soil processes. The changes in water composition may undergo different pathways depending on site-specific characteristics and forest components, especially the proportion of coniferous and deciduous trees. Here, we test whether changes in forest components and the intensity of disturbance can predict the chemical properties of water outflow from affected lake catchments. Information about forest regeneration (a phase dominated by deciduous trees) and the proportions of damaged and healthy coniferous trees and treeless areas were obtained from satellite data. The four study catchments of Prášilské, Laka, Plešné, and Čertovo lakes are geographically close and located in the same mountain range (Šumava Mts., Czech Republic) at similar altitude, but they differ in extents of forest disturbances and recoveries. The water quality measured at the lake catchment outflows differed, and better reflected the development of forest components and health than did meteorological (temperature and precipitation) or hydrological (discharge) variables. Several of the outflow properties (concentrations of inorganic aluminium, protons, potassium, calcium, magnesium, alkalinity, dissolved organic carbon (DOC), nitrate, and total phosphorus), responded catchment-specifically and with different delays to forest disturbance. The most pronounced differences occurred in DOC concentrations, which started to increase in the most disturbed Plešné and Laka catchments 7 and 6 years, respectively, after the peak in tree dieback, but did not increase significantly in the Prášilské catchment, which was disturbed several times during the last 3-4 decades. This study demonstrates an importance of extents of forest disturbances, the following changes in forest composition, and catchment-specific characteristics on water composition.

A Plea for Considering Processes That Take Place on the Micrometer Scale in Modelling the Groundwater Ecosystems’ Functions

The largest freshwater ecosystem on earth is in the subsurface: the groundwater. It is populated by animals of almost all phyla and by bacteria, archaea, and fungi. Processes on the macro-, meso-, and micro-scale shape this ecosystem. Bioremediation, i.e., the degradation of contaminants, is steered on the scale of micrometers. However, processes that take place on the micrometer scale are still poorly understood and have not been studied extensively. They are usually lacking from models. In this communication, the plea for studying and making models for the processes that take place on the micrometer scale is based on the conceptual model of bottom-up effects of the pore scale environment. Such conceptual models may influence how quantitative models are built by structuring them.

Groundwater fauna downtown - Drivers, impacts and implications for subsurface ecosystems in urban areas

Groundwater fauna (stygofauna) comprises organisms that have adapted to the dark subterranean environment over a course of thousands and millions of years, typically having slow metabolisms and long life cycles. They are crucial players in the groundwater of oxygenic aquifers, and contribute to various ecosystem services. Today's knowledge of their sensitivity to anthropogenic impacts is incomplete and a critical analysis of the general relevance of local findings is lacking. In this review, we focus on those areas with the highest interference between humans and stygofauna: cities. Here is where local pollution by various contaminants and heat strongly stresses the unique groundwater ecosystems. It is demonstrated that it is difficult to discern the influence of individual factors from the findings reported in field studies, and to extrapolate laboratory results to field conditions. The effects of temperature increase and chemical pollution vary strongly between tested species and test conditions. In general, previous findings indicate that heating, especially in the long-term, will increase mortality, and less adapted species are at risk of vanishing from their habitats. The same may be true for salinity caused by road de-icing in cold urban areas. Furthermore, high sensitivities were shown for ammonium, which will probably be even more pronounced with rising temperatures resulting in altered biodiversity patterns. Toxicity of heavy metals, for a variety of invertebrates, increases with time and chronic exposure. Our current knowledge reveals diverse potential impacts on groundwater fauna by urban pollution, but our insights gained so far can only be validated by standardized and long-term test concepts.

Key factors controlling microbial distribution on a DNAPL source area

Chlorinated solvents are among the common groundwater contaminants that show high complexity in their distribution in the subsoil. Microorganisms play a vital role in the natural attenuation of chlorinated solvents. Thus far, how the in situ soil microbial community responds to chlorinated solvent contamination has remained unclear. In this study, the microbial community distribution within two boreholes located in the source area of perchloroethene (PCE) was investigated via terminal restriction fragment length polymorphism (T-RFLP) and clone library analysis. Microbial data were related to the lithological and geochemical data and the concentration and isotopic composition of chloroethenes to determine the key factors controlling the distribution of the microbial communities. The results indicated that Proteobacteria, Actinobacteria, and Firmicutes were the most abundant phylums in the sediment. The statistical correlation with the environmental data proved that fine granulometry, oxygen tolerance, terminal electron-acceptor processes, and toxicity control microbial structure. This study improves our understanding of how the microbial community in the subsoil responds to high concentrations of chlorinated solvents.

The microbial dimension of submarine groundwater discharge: current challenges and future directions

Despite the relevance of submarine groundwater discharge (SGD) for ocean biogeochemistry, the microbial dimension of SGD remains poorly understood. SGD can influence marine microbial communities through supplying chemical compounds and microorganisms, and in turn, microbes at the land–ocean transition zone determine the chemistry of the groundwater reaching the ocean. However, compared with inland groundwater, little is known about microbial communities in coastal aquifers. Here, we review the state of the art of the microbial dimension of SGD, with emphasis on prokaryotes, and identify current challenges and future directions. Main challenges include improving the diversity description of groundwater microbiota, characterized by ultrasmall, inactive and novel taxa, and by high ratios of sediment-attached versus free-living cells. Studies should explore microbial dynamics and their role in chemical cycles in coastal aquifers, the bidirectional dispersal of groundwater and seawater microorganisms, and marine bacterioplankton responses to SGD. This will require not only combining sequencing methods, visualization and linking taxonomy to activity but also considering the entire groundwater–marine continuum. Interactions between traditionally independent disciplines (e.g. hydrogeology, microbial ecology) are needed to frame the study of terrestrial and aquatic microorganisms beyond the limits of their presumed habitats, and to foster our understanding of SGD processes and their influence in coastal biogeochemical cycles.

Selection imposed by local environmental conditions drives differences in microbial community composition across geographically distinct groundwater aquifers

Several studies have analyzed biogeographic distribution patterns of microbial communities across broad spatial scales. However, it is often unclear to what extent differences in community composition across different regions are caused by dispersal limitation or selection, and if selection is caused by local environmental conditions alone or additional broad-scale region-specific factors. This is especially true for groundwater environments, which have been understudied in this context relative to other non-subsurface habitats. Here, we analyzed microbial community composition based on exact 16S rRNA amplicon sequence variants (ASVs) from four geographically separated aquifers located in different regions along a latitudinal transect of ∼700 km across Germany. Using a combination of variation partitioning and ecological null models revealed that differences in microbial community composition were mainly the product of selection imposed by local environmental conditions and to a smaller but still significant extent dispersal limitation and drift across regions. Only ∼23% of the total variation in microbial community composition remained unexplained, possibly due to underestimated effects of dispersal limitation among local communities within regions and temporal drift. No evidence was found for selection due to region-specific factors independent of local environmental conditions.

Designing field-based investigations of organic micropollutant fate in rivers

Organic micropollutants in rivers are emitted via diffuse and point sources like from agricultural practice or wastewater treatment plants (WWTP). Extensive laboratory and field experiments have been conducted to understand emissions and fate of these pollutants in freshwaters. Nevertheless, data is often difficult to compare since common protocols for appropriate approaches are largely missing. Thus, interpretation of the observed changes in substance concentrations and of the underlying fate of these compounds downstream of the chemical input into the river is still challenging. To narrow this research gap, (1) process understanding and (2) measurement approaches for field-based investigations are critically reviewed in this article. The review includes, on the one hand, processes that change the volume of the water (hydrological processes) and, on the other hand, processes that affect the substance mass within the water (distribution and transformation). Environmental boundary conditions for the purpose of better comparability of different attenuation studies, as well as promising state-of-the-art measurement approaches from different disciplines, are presented. This overview helps to develop a tailored procedure to assess turnover mechanisms of organic micropollutants under field conditions. In this respect, further research needs to standardize interdisciplinary approaches to increase the informative value of collected data.

Multi-tracing of recharge seasonality and contamination in groundwater: A tool for urban water resource management

In this study, sources of recharge and contamination in urban groundwater and in groundwater underneath a forest in the same aquifer were determined and compared. Data on hydro-chemical parameters and stable isotopes of water were collected in urban and forest springs in the Kharkiv region, Ukraine, over a period of 12 months. Groundwater transit time and precipitation contribution were calculated using hydrogeological data and stable isotopes of water to delineate groundwater recharge conditions. Hydro-chemical data, stable isotopes and emerging contaminants were used to trace anthropogenic groundwater recharge and approximate sewage and tap water contributions to the aquifer. The results indicated that each spring had unique isotopic signatures that could be explained by recharge conditions, groundwater residence time, and specific mixing patterns with sewage and water leaks. Elevated nitrate content, stable isotopes of nitrate, and the presence of emerging pollutants (mainly illicit drugs) in most of the urban springs confirmed mixing of urban groundwater with sewage leaks. These leaks amounted to up to 25% of total recharge and exhibited seasonal variations in some springs. Overall, the results show that urban groundwater receives variable seasonal contributions of anthropogenic components that increase the risk to the environment and human health, and reduce its usability for drinking water production. The multi-tracing approach presented can be useful for other cities worldwide that have similar problems of poor water management and inadequate sewage and water supply infrastructure.

Natural source zone depletion of LNAPL: A critical review supporting modelling approaches

Natural source zone depletion (NSZD) of light non-aqueous phase liquids (LNAPLs) includes partitioning, transport and degradation of LNAPL components. NSZD is being considered as a site closure option during later stages of active remediation of LNAPL contaminated sites, and where LNAPL mass removal is limiting. To ensure NSZD meets compliance criteria and to design enhanced NSZD actions if required, residual risks posed by LNAPL and its long term behaviour require estimation. Prediction of long-term NSZD trends requires linking physicochemical partitioning and transport processes with bioprocesses at multiple scales within a modelling framework. Here we expand and build on the knowledge base of a recent review of NSZD, to establish the key processes and understanding required to model NSZD long term. We describe key challenges to our understanding, inclusive of the dominance of methanogenic or aerobic biodegradation processes, the potentially changeability of rates due to the weathering profile of LNAPL product types and ages, and linkages to underlying bioprocesses. We critically discuss different scales in subsurface simulation and modelling of NSZD. Focusing on processes at Darcy scale, 36 models addressing processes of importance to NSZD are investigated. We investigate the capabilities of models to accommodate more than 20 subsurface transport and transformation phenomena and present comparisons in several tables. We discuss the applicability of each group of models for specific site conditions.

Response and recovery of a pristine groundwater ecosystem impacted by toluene contamination - A meso-scale indoor aquifer experiment

Microbial communities are the driving force behind the degradation of contaminants like aromatic hydrocarbons in groundwater ecosystems. However, little is known about the response of native microbial communities to contamination in pristine environments as well as their potential to recover from a contamination event. Here, we used an indoor aquifer mesocosm filled with sandy quaternary calciferous sediment that was continuously fed with pristine groundwater to study the response, resistance and resilience of microbial communities to toluene contamination over a period of almost two years, comprising 132days of toluene exposure followed by nearly 600days of recovery. We observed an unexpectedly high intrinsic potential for toluene degradation, starting within the first two weeks after the first exposure. The contamination led to a shift from oxic to anoxic, primarily nitrate-reducing conditions as well as marked cell growth inside the contaminant plume. Depth-resolved community fingerprinting revealed a low resistance of the native microbial community to the perturbation induced by the exposure to toluene. Distinct populations that were dominated by a small number of operational taxonomic units (OTUs) rapidly emerged inside the plume and at the plume fringes, partially replacing the original community. During the recovery period physico-chemical conditions were restored to the pristine state within about 35days, whereas the recovery of the biological parameters was much slower and the community composition inside the former plume area had not recovered to the original state by the end of the experiment. These results demonstrate the low resilience of sediment-associated groundwater microbial communities to organic pollution and underline that recovery of groundwater ecosystems cannot be assessed solely by physico-chemical parameters.