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Ávila-Ramírez ML, Reyes-Reyes AL, Avila-Bonilla RG, Salas-Benito M, Cerecedo D, Ramírez-Moreno ME, Villagrán-Herrera ME, Mercado-Curiel RF, Salas-Benito JS. Differential Gene Expression Pattern of Importin β3 and NS5 in C6/36 Cells Acutely and Persistently Infected with Dengue Virus 2. Pathogens 2023; 12:pathogens12020191. [PMID: 36839463 PMCID: PMC9966734 DOI: 10.3390/pathogens12020191] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2022] [Revised: 01/19/2023] [Accepted: 01/23/2023] [Indexed: 01/31/2023] Open
Abstract
The establishment of persistent dengue virus infection within the cells of the mosquito vector is an essential requirement for viral transmission to a new human host. The mechanisms involved in the establishment and maintenance of persistent infection are not well understood, but it has been suggested that both viral and cellular factors might play an important role. In the present work, we evaluated differential gene expression in Aedes albopictus cells acutely (C6/36-HT) and persistently infected (C6-L) with Dengue virus 2 by cDNA-AFLP. We observed that importin β3 was upregulated in noninfected cells compared with C6-L cells. Using RT-qPCR and plaque assays, we observed that Dengue virus levels in C6-L cells essentially do not vary over time, and peak viral titers in acutely infected cells are observed at 72 and 120 h postinfection. The expression level of importin β3 was higher in acutely infected cells than in persistently infected cells; this correlates with higher levels of NS5 in the nucleus of the cell. The differential pattern of importin β3 expression between acute and persistent infection with Dengue virus 2 could be a mechanism to maintain viral infection over time, reducing the antiviral response of the cell and the viral replicative rate.
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Affiliation(s)
- María Leticia Ávila-Ramírez
- Doctorado en Ciencias en Biotecnología, Escuela Nacional de Medicina y Homeopatía, Instituto Politécnico Nacional, Mexico City 07320, Mexico
| | - Ana Laura Reyes-Reyes
- Campo Experimental Rosario Izapa, Instituto Nacional de Investigaciones Forestales, Agrícolas y Pecuaria, Tuxtla Chico, Chis 30878, Mexico
| | - Rodolfo Gamaliel Avila-Bonilla
- Institute of Immunology and Infection Research, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3JT, UK
| | - Mariana Salas-Benito
- Maestría en Ciencias en Biomedicina Molecular, Escuela Nacional de Medicina y Homeopatía, Instituto Politécnico Nacional, Mexico City 07320, Mexico
| | - Doris Cerecedo
- Doctorado en Ciencias en Biotecnología, Escuela Nacional de Medicina y Homeopatía, Instituto Politécnico Nacional, Mexico City 07320, Mexico
- Maestría en Ciencias en Biomedicina Molecular, Escuela Nacional de Medicina y Homeopatía, Instituto Politécnico Nacional, Mexico City 07320, Mexico
| | - María Esther Ramírez-Moreno
- Doctorado en Ciencias en Biotecnología, Escuela Nacional de Medicina y Homeopatía, Instituto Politécnico Nacional, Mexico City 07320, Mexico
- Maestría en Ciencias en Biomedicina Molecular, Escuela Nacional de Medicina y Homeopatía, Instituto Politécnico Nacional, Mexico City 07320, Mexico
| | | | - Ricardo Francisco Mercado-Curiel
- Facultad de Medicina, Universidad Autónoma de Querétaro, Santiago de Querétaro 76176, Mexico
- Correspondence: (R.F.M.-C.); (J.S.S.-B.)
| | - Juan Santiago Salas-Benito
- Doctorado en Ciencias en Biotecnología, Escuela Nacional de Medicina y Homeopatía, Instituto Politécnico Nacional, Mexico City 07320, Mexico
- Maestría en Ciencias en Biomedicina Molecular, Escuela Nacional de Medicina y Homeopatía, Instituto Politécnico Nacional, Mexico City 07320, Mexico
- Correspondence: (R.F.M.-C.); (J.S.S.-B.)
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Edillo F, Ymbong RR, Cabahug MM, Labiros D, Suycano MW, Lambrechts L, Sakuntabhai A. Yearly variations of the genetic structure of Aedes aegypti (Linnaeus) (Diptera: Culicidae) in the Philippines (2017-2019). INFECTION, GENETICS AND EVOLUTION : JOURNAL OF MOLECULAR EPIDEMIOLOGY AND EVOLUTIONARY GENETICS IN INFECTIOUS DISEASES 2022; 102:105296. [PMID: 35526823 DOI: 10.1016/j.meegid.2022.105296] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2021] [Revised: 04/29/2022] [Accepted: 05/01/2022] [Indexed: 06/14/2023]
Abstract
Dengue is the fastest emerging arboviral disease in the world, imposing a substantial health and economic burden in the tropics and subtropics. The mosquito, Aedes aegypti, is the primary vector of dengue in the Philippines. We examined the genetic structure of Ae. aegypti populations collected from the Philippine major islands (Luzon, Visayas and Mindanao), each with highland (Baguio city, Cebu city mountains and Maramag, Bukidnon, respectively) and lowland sites (Quezon city; Liloan, Cebu and Cagayan de Oro [CDO] city, respectively) during the wet (2017-2018 and 2018-2019) and dry seasons (2018 and 2019). Mosquitoes (n = 1800) were reared from field-collected eggs and immatures, and were analyzed using 12 microsatellite loci. Generalized linear model analyses revealed yearly variations between highlands and lowlands in the major islands as supported by Bayesian clustering analyses on: 1) stronger selection (inbreeding coefficient, FIS = 0.52) in 2017-2018 than in 2018-2019 (FIS = 0.32) as influenced by rainfall, 2) the number of non-neutral loci indicating selection, and 3) differences of effective population size although at p = 0.05. Across sites except Baguio and CDO cities: 1) FIS varied seasonally as influenced by relative humidity (RH), and 2) the number of non-neutral loci varied as influenced by RH and rainfall indicating selection. Human-mediated activities and not isolation by distance influenced genetic differentiations of mosquito populations within (FST = 0.04) the major islands and across sites (global FST = 0.16). Gene flow (Nm) and potential first generation migrants among populations were observed between lowlands and highlands within and across major islands. Our results suggest that dengue control strategies in the epidemic wet season are to be changed into whole year-round approach, and water pipelines are to be installed in rural mountains to prevent the potential breeding sites of mosquitoes.
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Affiliation(s)
- Frances Edillo
- Mosquito Research Laboratory, Department of Biology, University of San Carlos - Talamban campus, Cebu city 6000, Philippines.
| | - Rhoniel Ryan Ymbong
- Mosquito Research Laboratory, Department of Biology, University of San Carlos - Talamban campus, Cebu city 6000, Philippines.
| | - Maureen Mathilde Cabahug
- Mosquito Research Laboratory, Department of Biology, University of San Carlos - Talamban campus, Cebu city 6000, Philippines
| | - Dinesse Labiros
- Mosquito Research Laboratory, Department of Biology, University of San Carlos - Talamban campus, Cebu city 6000, Philippines
| | - Mark Windy Suycano
- Mosquito Research Laboratory, Department of Biology, University of San Carlos - Talamban campus, Cebu city 6000, Philippines
| | - Louis Lambrechts
- Insect-Virus Interactions Unit, Institut Pasteur, UMR2000, CNRS, Paris, France.
| | - Anavaj Sakuntabhai
- Functional Genetics of Infectious Diseases Unit, Institut Pasteur, UMR2000, CNRS, Paris, France.
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Carvajal TM, Ogishi K, Yaegeshi S, Hernandez LFT, Viacrusis KM, Ho HT, Amalin DM, Watanabe K. Fine-scale population genetic structure of dengue mosquito vector, Aedes aegypti, in Metropolitan Manila, Philippines. PLoS Negl Trop Dis 2020; 14:e0008279. [PMID: 32365059 PMCID: PMC7224578 DOI: 10.1371/journal.pntd.0008279] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2019] [Revised: 05/14/2020] [Accepted: 04/08/2020] [Indexed: 11/25/2022] Open
Abstract
Dengue is a highly endemic disease in Southeast Asia and is transmitted primarily by the mosquito, Aedes aegypti. The National Capital Region (NCR) of the Philippines, or Metropolitan Manila, is a highly urbanized area that is greatly affected by this arboviral disease. Urbanization has been shown to increase the dispersal of this mosquito vector. For this reason, we conducted a fine-scale population genetic study of Ae. aegypti in this region. We collected adult Ae. aegypti mosquitoes (n = 526 individuals) within the region (n = 21 study areas) and characterized the present population structure and the genetic relatedness among mosquito populations. We genotyped 11 microsatellite loci from all sampled mosquito individuals and analyzed their genetic diversity, differentiation and structure. The results revealed low genetic differentiation across mosquito populations which suggest high gene flow and/or weak genetic drift among mosquito populations. Bayesian analysis indicated multiple genetic structures (K = 3-6), with no clear genetically distinct population structures. This result implies the passive or long-distance dispersal capability nature Ae. aegypti possibly through human-mediated transportation. The constructed dendrogram in this study describes the potential passive dispersal patterns across Metropolitan Manila. Furthermore, spatial autocorrelation analysis showed the limited and active dispersal capability (<1km) of the mosquito vector. Our findings are consistent with previous studies that investigated the genetic structure and dual (active and passive) dispersal capability of Ae. aegypti in a fine-scale highly urbanized area.
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Affiliation(s)
- Thaddeus M. Carvajal
- Center for Marine Environmental Studies (CMES)–Ehime University, Matsuyama, Japan
- Department of Civil and Environmental Engineering—Ehime University, Matsuyama, Japan
- Biology Department–De La Salle University, Taft Ave Manila, Philippines
- Biological Control Research Unit, Center for Natural Science and Environmental Research—De La Salle University, Taft Ave Manila, Philippines
| | - Kohei Ogishi
- Department of Civil and Environmental Engineering—Ehime University, Matsuyama, Japan
| | - Sakiko Yaegeshi
- Department of Civil and Environmental Engineering—Ehime University, Matsuyama, Japan
- Department of Civil and Environmental Engineering, University of Yamanashi, Kofu, Japan
| | | | | | - Howell T. Ho
- Department of Biological Sciences, Trinity University of Asia, Quezon City, Philippines
| | - Divina M. Amalin
- Biology Department–De La Salle University, Taft Ave Manila, Philippines
- Biological Control Research Unit, Center for Natural Science and Environmental Research—De La Salle University, Taft Ave Manila, Philippines
| | - Kozo Watanabe
- Center for Marine Environmental Studies (CMES)–Ehime University, Matsuyama, Japan
- Department of Civil and Environmental Engineering—Ehime University, Matsuyama, Japan
- Biology Department–De La Salle University, Taft Ave Manila, Philippines
- Biological Control Research Unit, Center for Natural Science and Environmental Research—De La Salle University, Taft Ave Manila, Philippines
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Tarter KD, Levy CE, Yaglom HD, Adams LE, Plante L, Casal MG, Gouge DH, Rathman R, Stokka D, Weiss J, Venkat H, Walker KR. USING CITIZEN SCIENCE TO ENHANCE SURVEILLANCE OF AEDES AEGYPTI IN ARIZONA, 2015-17. JOURNAL OF THE AMERICAN MOSQUITO CONTROL ASSOCIATION 2019; 35:11-18. [PMID: 31334498 PMCID: PMC6644674 DOI: 10.2987/18-6789.1] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
Vector surveillance is an essential component of vector-borne disease prevention, but many communities lack resources to support extensive surveillance. The Great Arizona Mosquito Hunt (GAMH) was a collaborative citizen science project conducted during 2015-17 to enhance surveillance for Aedes aegypti in Arizona. Citizen science projects engage the public in scientific research in order to further scientific knowledge while improving community understanding of a specific field of science and the scientific process. Participating schools and youth organizations across the state conducted oviposition trapping for 1-4 wk during peak Ae. aegypti season in Arizona and returned the egg sheets to collaborating entomologists for identification. During the 3-year program, 120 different schools and youth organizations participated. Few participants actually collected Aedes eggs in their traps in 2015 or 2017, but about one-third of participants collected eggs during 2016, including 3 areas that were not previously reported to have Ae. aegypti. While relatively few new areas of Ae. aegypti activity were identified, GAMH was found to be a successful method of engaging citizen scientists. Future citizen science mosquito surveillance projects might be useful to further define the ecology and risk for vector-borne diseases in Arizona.
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Affiliation(s)
- Kara D Tarter
- Arizona Department of Health Services, Phoenix, AZ 85007
| | - Craig E Levy
- Maricopa County Department of Public Health, Phoenix, AZ 85012
| | | | - Laura E Adams
- Arizona Department of Health Services, Phoenix, AZ 85007
- Career Epidemiology Field Officer Program, Center for Preparedness and Response, Centers for Disease Control and Prevention, Atlanta, GA 30333
| | - Lydia Plante
- Arizona Department of Health Services, Phoenix, AZ 85007
| | | | - Dawn H Gouge
- University of Arizona, Department of Entomology, Tucson, AZ 85721
| | | | - Dawn Stokka
- Maricopa County Department of Public Health, Phoenix, AZ 85012
| | - Joli Weiss
- Arizona Department of Health Services, Phoenix, AZ 85007
| | - Heather Venkat
- Arizona Department of Health Services, Phoenix, AZ 85007
- Career Epidemiology Field Officer Program, Center for Preparedness and Response, Centers for Disease Control and Prevention, Atlanta, GA 30333
| | - Kathleen R Walker
- University of Arizona, Department of Entomology, Tucson, AZ 85721
- To whom correspondence should be addressed
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Joyce AL, Torres MM, Torres R, Moreno M. Genetic variability of the Aedes aegypti (Diptera: Culicidae) mosquito in El Salvador, vector of dengue, yellow fever, chikungunya and Zika. Parasit Vectors 2018; 11:637. [PMID: 30547835 PMCID: PMC6295114 DOI: 10.1186/s13071-018-3226-5] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2018] [Accepted: 11/21/2018] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Aedes aegypti is associated with dengue, yellow fever, chikungunya and Zika viruses. This vector is widespread in tropical and subtropical areas, and can also occur in temperate areas at higher latitudes. The geographical distribution of Ae. aegypti continues to spread due to human activities. This is the first study to examine the population genetic structure of this insect in El Salvador, Central America. METHODS Aedes aegypti larvae were collected from six geographical regions of El Salvador: Sonsonate, San Salvador, Chalatenango, Usulután, San Miguel and Morazán. Larvae were raised into adults, identified and preserved. Two molecular markers, amplified fragment length polymorphism (AFLP) genotyping and mitochondrial DNA (mtDNA) cytochrome c oxidase subunit 1 (cox1) sequencing, were used to investigate population genetic structure. RESULTS Structure analysis found two genetically distinct populations; one occurs predominantly in the north and west, and a mix of two populations occurs in the southeast of the country. Genetic distances ranged from 0.028 (2.8%) to 0.091 (9%), and an AMOVA analysis found 11% variation between populations. Mitochondrial DNA cox1 sequences produced a haplotype network which consisted of 3 haplogroups and 10 haplotypes. Haplogroup 1 had low haplotype and nucleotide diversity and was found in all six regions. Haplogroups 2 and 3 had higher haplotype and nucleotide diversity, and were less abundant; haplogroup 3 was found in only 3 of the six regions studied. Bottleneck tests were significant, suggesting that populations had undergone a recent bottleneck. A maximum likelihood tree, which combined samples from this study with available sequences in GenBank, suggested that two genetically divergent lineages had been introduced. CONCLUSIONS Relatively high genetic diversity was found in Ae. aegypti in El Salvador. The mtDNA sequences clustered into two lineages, as found in previous studies. Samples in El Salvador may be introduced from regions in North and South America where past eradication was not complete. Future study of genotypes in surrounding countries would provide a more complete picture of the movement and potential source of introductions of this vector. The distribution of the lineages and haplogroups may further our understanding of the epidemiology of Ae. aegypti associated vector borne diseases.
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Affiliation(s)
- Andrea L Joyce
- Public Health, University of California, 5200 North Lake Road, Merced, CA, 95343, USA.
| | - Melany Murillo Torres
- Departmento de Biología, Universidad de El Salvador, Final de Av. Mártires y Héroes del 30 Julio, San Salvador, El Salvador
| | - Ryan Torres
- Public Health, University of California, 5200 North Lake Road, Merced, CA, 95343, USA
| | - Miguel Moreno
- Departmento de Biología, Universidad de El Salvador, Final de Av. Mártires y Héroes del 30 Julio, San Salvador, El Salvador
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Genetic variability of Aedes aegypti in the department of Sucre, Colombia, by analysis of the nucleotide sequence of the mitochondrial ND4 gene. BIOMEDICA 2018; 38:267-276. [PMID: 30184356 DOI: 10.7705/biomedica.v38i0.3728] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Received: 12/07/2016] [Revised: 10/04/2017] [Indexed: 11/21/2022]
Abstract
Introduction. Aedes aegypti is the most important mosquito species in America for the transmission of viruses of dengue, Zika, Chikungunya and yellow fever. Ecological factors as well as chemical controls can affect the genetic composition of Ae. aegypti populations, which is why its genetic characterization is necessary.
Objective. To determine the genetic variability of Ae. aegypti populations in four municipalities of Sucre department, Colombia.
Materials and methods. Larvae of Ae. aegypti, collected in the municipalities of Sincelejo, Sampués, Corozal and Guaranda, Sucre department, were reared under laboratory conditions to adult stage. A segment of the mitochondrial ND4 gene which codes for the subunit 4 of the enzyme NADH-dehydrogenase was used as genetic marker. The genetic analysis included the estimation of parameters of nucleotide and haplotype diversity, genetic structure and gene flow.
Results. One hundred and eight partial sequences of 357 nucleotides and four nucleotide haplotypes of the ND4 gene of Ae. aegypti were obtained. A significantly high genetic differentiation was found between the Sampués and Guaranda populations (FST=0.59467), Sincelejo and Sampués (FST=0.25637), and Corozal and Guaranda (FST=0.22237). A high gene flow (Nm=infinite) was observed among the populations of Sincelejo and Corozal.
Conclusion. There are genetic differences between the Ae. aegypti populations from the municipalities of Sucre department. The presence of a new haplotype of the mitochondrial ND4 gene of Ae. aegypti in Colombia was recorded, detected in the municipality of Sincelejo.
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Shi QM, Zhang HD, Wang G, Guo XX, Xing D, Dong YD, Xiao L, Gao J, Liu QM, Sun AJ, Li CX, Zhao TY. The genetic diversity and population structure of domestic Aedes aegypti (Diptera: Culicidae) in Yunnan Province, southwestern China. Parasit Vectors 2017; 10:292. [PMID: 28610594 PMCID: PMC5470206 DOI: 10.1186/s13071-017-2213-6] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2016] [Accepted: 05/23/2017] [Indexed: 11/30/2022] Open
Abstract
BACKGROUND There was no record of Aedes aegypti in Yunnan Province, China, until 2002, but this species is now continuously found in nine cities (or counties). Until now, little was known about the genetic diversity and population structure of this invasive species. Thus, a detailed understanding of the invasion strategies, colonisation and dispersal of this mosquito from a population genetics perspective is urgently needed for controlling and eliminating this disease vector. METHODS The genetic diversity and population structure of Ae. aegypti communities were analysed by screening nine microsatellite loci from 833 Ae. aegypti mosquitoes sampled from 28 locations in Yunnan Province. RESULTS In total, 114 alleles were obtained, and the average polymorphic information content (PIC) value was 0.672. The value of the alleles per locus ranged from 2.90 to 5.18, with an average of 4.04. The value of He ranged from 0.353 to 0.681, and the value of Ho within populations ranged from 0.401 to 0.689. Of the 28 locations, two showed significant departures from the Hardy-Weinberg equilibrium (HWE) with P-values less than 0.05, and a bottleneck effect was detected among locations from Ruili and the border areas with the degree of 60% and 50%, respectively. Combined with the F-statistics (FIT = 0.222; FCT = 0.145), the analysis of molecular variance (AMOVA) revealed that there was substantial molecular variation among individuals, accounting for 77.76% of the sample, with a significant P-value (<0.0001). The results suggest that genetic differences in Ae. aegypti originated primarily among individuals rather than among populations. Furthermore, the STRUCTURE and UPGMA cluster analyses showed that Ae. aegypti from the border areas were genetically isolated compared to those from the cities Ruili and Jinghong, consistent with the results of the Mantel test (R 2 = 0.245, P < 0.0001). CONCLUSIONS Continuous invasion contributes to the maintenance of Ae. aegypti populations' genetic diversity and different invasion accidents result in the genetic difference among Ae. aegypti populations of Yunnan Province.
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Affiliation(s)
- Qing-Ming Shi
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, Fengtai District China
- Center for Disease Control and Prevention of Chengdu Military Command, Chengdu, Jingjiang District China
| | - Heng-Duan Zhang
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, Fengtai District China
| | - Gang Wang
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, Fengtai District China
- Zhejiang Entry-exit Inspection and Quarantine Bureau, Hangzhou, China
| | - Xiao-Xia Guo
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, Fengtai District China
| | - Dan Xing
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, Fengtai District China
| | - Yan-De Dong
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, Fengtai District China
| | - Li Xiao
- Chengdu Medical College, Chengdu, Xindu District China
| | - Jian Gao
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, Fengtai District China
| | - Qin-Mei Liu
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, Fengtai District China
| | - Ai-Juan Sun
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, Fengtai District China
| | - Chun-Xiao Li
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, Fengtai District China
| | - Tong-Yan Zhao
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, Fengtai District China
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Anstead CA, Perry T, Richards S, Korhonen PK, Young ND, Bowles VM, Batterham P, Gasser RB. The Battle Against Flystrike - Past Research and New Prospects Through Genomics. ADVANCES IN PARASITOLOGY 2017; 98:227-281. [PMID: 28942770 DOI: 10.1016/bs.apar.2017.03.001] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
Flystrike, or cutaneous myiasis, is caused by blow fly larvae of the genus Lucilia. This disease is a major problem in countries with large sheep populations. In Australia, Lucilia cuprina (Wiedemann, 1830) is the principal fly involved in flystrike. While much research has been conducted on L. cuprina, including physical, chemical, immunological, genetic and biological investigations, the molecular biology of this fly is still poorly understood. The recent sequencing, assembly and annotation of the draft genome and analyses of selected transcriptomes of L. cuprina have given a first global glimpse of its molecular biology and insights into host-fly interactions, insecticide resistance genes and intervention targets. The present article introduces L. cuprina, flystrike and associated issues, details past control efforts and research foci, reviews salient aspects of the L. cuprina genome project and discusses how the new genomic and transcriptomic resources for this fly might accelerate fundamental molecular research of L. cuprina towards developing new methods for the treatment and control of flystrike.
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Affiliation(s)
| | - Trent Perry
- The University of Melbourne, Parkville, VIC, Australia
| | | | | | - Neil D Young
- The University of Melbourne, Parkville, VIC, Australia
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Ernst KC, Walker KR, Reyes-Castro P, Joy TK, Castro-Luque AL, Diaz-Caravantes RE, Gameros M, Haenchen S, Hayden MH, Monaghan A, Jeffrey-Guttierez E, Carrière Y, Riehle MR. Aedes aegypti (Diptera: Culicidae) Longevity and Differential Emergence of Dengue Fever in Two Cities in Sonora, Mexico. JOURNAL OF MEDICAL ENTOMOLOGY 2017; 54:204-211. [PMID: 28082648 PMCID: PMC5853638 DOI: 10.1093/jme/tjw141] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/18/2016] [Accepted: 08/08/2016] [Indexed: 05/21/2023]
Abstract
Dengue virus, primarily transmitted by the Aedes aegypti (L.) mosquito, has rapidly expanded in geographic extent over the past several decades. In some areas, however, dengue fever has not emerged despite established Ae. aegypti populations. The reasons for this are unclear and have sometimes been attributed to socio-economic differences. In 2013 we compared Ae. aegypti adult density and population age structure between two cities in Sonora, Mexico: Hermosillo, which has regular seasonal dengue virus transmission, and Nogales, which has minimal transmission. Larval and pupal abundance was greater in Nogales, and adult density was only higher in Hermosillo during September. Population age structure, however, was consistently older in Hermosillo. This difference in longevity may have been one factor that limited dengue virus transmission in Nogales in 2013, as a smaller proportion of Ae. aegypti females survived past the extrinsic incubation period.
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Affiliation(s)
- Kacey C Ernst
- University of Arizona, Tucson, Arizona (; ; ; ; ; ; ; )
| | | | | | - Teresa K Joy
- University of Arizona, Tucson, Arizona (; ; ; ; ; ; ; )
| | | | | | | | | | - Mary H Hayden
- National Center for Atmospheric Research, Boulder, CO (; )
| | | | | | - Yves Carrière
- University of Arizona, Tucson, Arizona (; ; ; ; ; ; ; )
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Onyango MG, Beebe NW, Gopurenko D, Bellis G, Nicholas A, Ogugo M, Djikeng A, Kemp S, Walker PJ, Duchemin JB. Assessment of population genetic structure in the arbovirus vector midge, Culicoides brevitarsis (Diptera: Ceratopogonidae), using multi-locus DNA microsatellites. Vet Res 2015; 231:39-58. [PMID: 26408175 DOI: 10.1007/978-3-319-20825-1_2] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022] Open
Abstract
Bluetongue virus (BTV) is a major pathogen of ruminants that is transmitted by biting midges (Culicoides spp.). Australian BTV serotypes have origins in Asia and are distributed across the continent into two distinct episystems, one in the north and another in the east. Culicoides brevitarsis is the major vector of BTV in Australia and is distributed across the entire geographic range of the virus. Here, we describe the isolation and use of DNA microsatellites and gauge their ability to determine population genetic connectivity of C. brevitarsis within Australia and with countries to the north. Eleven DNA microsatellite markers were isolated using a novel genomic enrichment method and identified as useful for genetic analyses of sampled populations in Australia, northern Papua New Guinea (PNG) and Timor-Leste. Significant (P < 0.05) population genetic subdivision was observed between all paired regions, though the highest levels of genetic sub-division involved pair-wise tests with PNG (PNG vs. Australia (FST = 0.120) and PNG vs. Timor-Leste (FST = 0.095)). Analysis of multi-locus allelic distributions using STRUCTURE identified a most probable two-cluster population model, which separated PNG specimens from a cluster containing specimens from Timor-Leste and Australia. The source of incursions of this species in Australia is more likely to be Timor-Leste than PNG. Future incursions of BTV positive C. brevitarsis into Australia may be genetically identified to their source populations using these microsatellite loci. The vector's panmictic genetic structure within Australia cannot explain the differential geographic distribution of BTV serotypes.
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Affiliation(s)
- Maria G Onyango
- CSIRO Health & Biosecurity Australian Animal Health Laboratory, 5 Portalington Road, Geelong, Victoria, 3220, Australia. .,School of Medicine, Deakin University, 75 Pidgons Road, Waurn Ponds, Victoria, 3216, Australia.
| | - Nigel W Beebe
- School of Biological Sciences, The University of Queensland, St Lucia, Queensland, 4072, Australia. .,CSIRO Health & Biosecurity Ecosciences Precinct, 41, Boggo Road, Dutton Park, Queensland, 4102, Australia.
| | - David Gopurenko
- NSW Department of Primary Industries, Wagga Wagga Agricultural Institute, PMB, Wagga Wagga, New South Wales, 2650, Australia. .,Graham Centre for Agricultural Innovation, Locked Bag 588, Wagga Wagga, New South Wales, 2678, Australia.
| | - Glenn Bellis
- Northern Australia Quarantine Strategy, 1 Pederson Road, Marrara, Northern Territory, 0812, Australia.
| | - Adrian Nicholas
- Graham Centre for Agricultural Innovation, Locked Bag 588, Wagga Wagga, New South Wales, 2678, Australia.
| | - Moses Ogugo
- International Livestock Research Institute, P.O. Box 30709, 00100, Nairobi, Kenya.
| | - Appolinaire Djikeng
- International Livestock Research Institute, P.O. Box 30709, 00100, Nairobi, Kenya. .,Biosciences eastern and central Africa - ILRI Hub (BecA-ILRI Hub), ILRI, PO Box 30709, 00100, Nairobi, Kenya.
| | - Steve Kemp
- International Livestock Research Institute, P.O. Box 30709, 00100, Nairobi, Kenya.
| | - Peter J Walker
- CSIRO Health & Biosecurity Australian Animal Health Laboratory, 5 Portalington Road, Geelong, Victoria, 3220, Australia.
| | - Jean-Bernard Duchemin
- CSIRO Health & Biosecurity Australian Animal Health Laboratory, 5 Portalington Road, Geelong, Victoria, 3220, Australia.
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11
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Onyango MG, Beebe NW, Gopurenko D, Bellis G, Nicholas A, Ogugo M, Djikeng A, Kemp S, Walker PJ, Duchemin JB. Assessment of population genetic structure in the arbovirus vector midge, Culicoides brevitarsis (Diptera: Ceratopogonidae), using multi-locus DNA microsatellites. Vet Res 2015; 46:108. [PMID: 26408175 PMCID: PMC4582633 DOI: 10.1186/s13567-015-0250-8] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2015] [Accepted: 08/24/2015] [Indexed: 11/10/2022] Open
Abstract
Bluetongue virus (BTV) is a major pathogen of ruminants that is transmitted by biting midges (Culicoides spp.). Australian BTV serotypes have origins in Asia and are distributed across the continent into two distinct episystems, one in the north and another in the east. Culicoides brevitarsis is the major vector of BTV in Australia and is distributed across the entire geographic range of the virus. Here, we describe the isolation and use of DNA microsatellites and gauge their ability to determine population genetic connectivity of C. brevitarsis within Australia and with countries to the north. Eleven DNA microsatellite markers were isolated using a novel genomic enrichment method and identified as useful for genetic analyses of sampled populations in Australia, northern Papua New Guinea (PNG) and Timor-Leste. Significant (P < 0.05) population genetic subdivision was observed between all paired regions, though the highest levels of genetic sub-division involved pair-wise tests with PNG (PNG vs. Australia (FST = 0.120) and PNG vs. Timor-Leste (FST = 0.095)). Analysis of multi-locus allelic distributions using STRUCTURE identified a most probable two-cluster population model, which separated PNG specimens from a cluster containing specimens from Timor-Leste and Australia. The source of incursions of this species in Australia is more likely to be Timor-Leste than PNG. Future incursions of BTV positive C. brevitarsis into Australia may be genetically identified to their source populations using these microsatellite loci. The vector’s panmictic genetic structure within Australia cannot explain the differential geographic distribution of BTV serotypes.
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Affiliation(s)
- Maria G Onyango
- CSIRO Health & Biosecurity Australian Animal Health Laboratory, 5 Portalington Road, Geelong, Victoria, 3220, Australia. .,School of Medicine, Deakin University, 75 Pidgons Road, Waurn Ponds, Victoria, 3216, Australia.
| | - Nigel W Beebe
- School of Biological Sciences, The University of Queensland, St Lucia, Queensland, 4072, Australia. .,CSIRO Health & Biosecurity Ecosciences Precinct, 41, Boggo Road, Dutton Park, Queensland, 4102, Australia.
| | - David Gopurenko
- NSW Department of Primary Industries, Wagga Wagga Agricultural Institute, PMB, Wagga Wagga, New South Wales, 2650, Australia. .,Graham Centre for Agricultural Innovation, Locked Bag 588, Wagga Wagga, New South Wales, 2678, Australia.
| | - Glenn Bellis
- Northern Australia Quarantine Strategy, 1 Pederson Road, Marrara, Northern Territory, 0812, Australia.
| | - Adrian Nicholas
- Graham Centre for Agricultural Innovation, Locked Bag 588, Wagga Wagga, New South Wales, 2678, Australia.
| | - Moses Ogugo
- International Livestock Research Institute, P.O. Box 30709, 00100, Nairobi, Kenya.
| | - Appolinaire Djikeng
- International Livestock Research Institute, P.O. Box 30709, 00100, Nairobi, Kenya. .,Biosciences eastern and central Africa - ILRI Hub (BecA-ILRI Hub), ILRI, PO Box 30709, 00100, Nairobi, Kenya.
| | - Steve Kemp
- International Livestock Research Institute, P.O. Box 30709, 00100, Nairobi, Kenya.
| | - Peter J Walker
- CSIRO Health & Biosecurity Australian Animal Health Laboratory, 5 Portalington Road, Geelong, Victoria, 3220, Australia.
| | - Jean-Bernard Duchemin
- CSIRO Health & Biosecurity Australian Animal Health Laboratory, 5 Portalington Road, Geelong, Victoria, 3220, Australia.
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Temporal genetic structure of major dengue vector Aedes aegypti from Manaus, Amazonas, Brazil. Acta Trop 2014; 134:80-8. [PMID: 24631342 DOI: 10.1016/j.actatropica.2014.02.014] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2013] [Revised: 02/19/2014] [Accepted: 02/23/2014] [Indexed: 11/24/2022]
Abstract
In recent years, high levels of Aedes aegypti infestation and several dengue outbreaks with fatal outcome cases have been reported in Manaus, State of Amazonas, Brazil. This situation made it important to understand the genetic structure and gene flow patterns among the populations of this vector in Manaus, vital pieces of information for their management and development of new control strategies. In this study, we used nine microsatellite loci to examine the effect of seasonality on the genetic structure and gene flow patterns in Ae. aegypti populations from four urban neighborhoods of Manaus, collected during the two main rainy and dry seasons. All loci were polymorphic in the eight samples from the two seasons, with a total of 41 alleles. The genetic structure analyses of the samples from the rainy season revealed genetic homogeneity and extensive gene flow, a result consistent with the abundance of breeding sites for this vector. However, the samples from the dry season were significantly structured, due to a reduction of Ne in two (Praça 14 de Janeiro and Cidade Nova) of the four samples analyzed, and this was the primary factor influencing structure during the dry season. Genetic bottleneck analyses suggested that the Ae. aegypti populations from Manaus are being maintained continuously throughout the year, with seasonal reduction rather than severe bottleneck or extinction, corroborating previous reports. These findings are of extremely great importance for designing new dengue control strategies in Manaus.
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Rasheed SB, Boots M, Frantz AC, Butlin RK. Population structure of the mosquito Aedes aegypti (Stegomyia aegypti) in Pakistan. MEDICAL AND VETERINARY ENTOMOLOGY 2013; 27:430-440. [PMID: 23662926 DOI: 10.1111/mve.12001] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
Eleven microsatellite markers were used to determine the genetic population structure and spread of Aedes aegypti (Stegomyia aegypti) (Diptera: Culicidae) in Pakistan using mosquitoes collected from 13 different cities. There is a single genetic cluster of Ae. aegypti in Pakistan with a pattern of isolation by distance within the population. The low level of isolation by distance suggests the long-range passive dispersal of this mosquito, which may be facilitated by the tyre trade in Pakistan. A decrease in genetic diversity from south to north suggests a recent spread of this mosquito from Karachi. A strong negative correlation between genetic distance and the quality of road connections shows that populations in cities connected by better road networks are less differentiated, which suggests the human-aided passive dispersal of Ae. aegypti in Pakistan. Dispersal on a large spatial scale may facilitate the strategy of introducing transgenic Ae. aegypti or intracellular bacteria such as Wolbachia to control the spread of dengue disease in Pakistan, but it also emphasizes the need for simple measures to control container breeding sites.
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Affiliation(s)
- S B Rasheed
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield, U.K.Department of Zoology, University of Peshawar, Peshawar, PakistanDepartment of Biosciences, University of Exeter, Penryn, U.K. andInstitute of Zoology, University of Greifswald, Greifswald, Germany
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Population genetic structure of Culex quinquefasciatus in India by ISSR marker. ASIAN PAC J TROP MED 2011; 4:357-62. [PMID: 21771676 DOI: 10.1016/s1995-7645(11)60103-x] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2010] [Revised: 12/27/2010] [Accepted: 01/15/2011] [Indexed: 11/22/2022] Open
Abstract
OBJECTIVE To characterize the genetic structure of various populations of Culex quinquefasciatus (Cx. quinquefasciatus) from India representing different geoclimatic locations. METHODS Inter simple sequence repeat (ISSR) markers were used. A set of 20 primers were screened with the laboratory populations of mosquito species. Finally the IS 40 primer was chosen based on the scorable banding pattern showing 100 percent polymorphism among the various populations. The statistical analysis was done using POPGENE 1.31 software. The consensus tree was generated based on UPGMA modified from NEIGHBOR procedure of PHYLIP Version 3.5. RESULTS The cluster analysis shows the main cluster which is divided into two sub cluster representing all the populations separated as per their phylogeographic and geoclimatic condition. CONCLUSIONS The findings will be helpful in understanding the population variation under different ecological conditions and development of effective vector management strategies.
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Brochero H, Li C, Wilkerson R, Conn JE, Ruiz-García M. Genetic structure of Anopheles (Nyssorhynchus) marajoara (Diptera: Culicidae) in Colombia. Am J Trop Med Hyg 2010; 83:585-95. [PMID: 20810825 DOI: 10.4269/ajtmh.2010.09-0482] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Abstract
Five Anopheles marajoara Galvão and Damasceno populations, representing diverse ecological conditions, were sampled throughout Colombia and analyzed using nine hypervariable DNA microsatellite loci. The overall genetic diversity (H = 0.58) was lower than that determined for some Brazilian populations using the same markers. The Caquetá population (Colombia) had the lowest gene diversity (H = 0.48), and it was the only population at Hardy-Weinberg equilibrium. Hardy-Weinberg disequilibrium in the remaining four populations was probably caused by the Wahlund effect. The assignment analyses showed two incompletely isolated gene pools separated by the Eastern Andean cordillera. However, other possible geographical barriers (rivers and other mountains) did not play any role in the moderate genetic heterogeneity found among these populations (F(ST) = 0.069). These results are noteworthy, because this species is a putative malaria vector in Colombia.
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Affiliation(s)
- Helena Brochero
- Laboratorio de Entomología, Instituto Nacional de Salud, Bogotá DC, Colombia
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Beckert JC, Friedland DE, Wallace MM. Genotyping diptera using amplified fragment length polymorphism (AFLP): development of a genetic marker system for species in the families Calliphoridae and Sarcophagidae. AUST J FORENSIC SCI 2010. [DOI: 10.1080/00450611003623369] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Lall GK, Darby AC, Nystedt B, Macleod ET, Bishop RP, Welburn SC. Amplified fragment length polymorphism (AFLP) analysis of closely related wild and captive tsetse fly (Glossina morsitans morsitans) populations. Parasit Vectors 2010; 3:47. [PMID: 20504326 PMCID: PMC2893174 DOI: 10.1186/1756-3305-3-47] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2010] [Accepted: 05/26/2010] [Indexed: 11/10/2022] Open
Abstract
Background Tsetse flies (Diptera: Glossinidae) are vectors of trypanosomes that cause sleeping sickness in humans and nagana in livestock across sub-Saharan Africa. Tsetse control strategies rely on a detailed understanding of the epidemiology and ecology of tsetse together with genetic variation within and among populations. High-resolution nuclear genetic markers are useful tools for elucidation of the genetic basis of phenotypic traits. In this study amplified fragment length polymorphism (AFLP) markers were developed to analyze genetic variation in Glossina morsitans morsitans from laboratory and field-collected populations from Zimbabwe. Results A total of seven hundred and fifty one loci from laboratory and field populations of G. m. morsitans from Zimbabwe were genotyped using AFLP with seven primer combinations. Analysis identified 335 polymorphic loci. The two populations could be distinguished by cluster and principal components analysis (PCA) analysis, indicating that AFLP markers can be used to separate genetically similar populations; at the same time differences observed between laboratory and field populations were not very great. Among the techniques investigated, the use of acetone was the most reliable method of preservation of tsetse for subsequent extraction of high molecular weight DNA. An interesting finding was that AFLP also enabled robust within-population discrimination of male and female tsetse flies due to their different X chromosome DNA complements. Conclusions AFLP represents a useful additional tool to add to the suite of techniques currently available for the genetic analysis of tsetse populations and represents a useful resource for identification of the genetic basis of important phenotypic traits.
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Affiliation(s)
- Gurdeep K Lall
- Centre for Infectious Disease, School of Biomedical Sciences, The University of Edinburgh, Summerhall, Edinburgh, EH9 1QH, UK.
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Hlaing T, Tun-Lin W, Somboon P, Socheat D, Setha T, Min S, Thaung S, Anyaele O, De Silva B, Chang MS, Prakash A, Linton Y, Walton C. Spatial genetic structure of Aedes aegypti mosquitoes in mainland Southeast Asia. Evol Appl 2010; 3:319-39. [PMID: 25567928 PMCID: PMC3352470 DOI: 10.1111/j.1752-4571.2009.00113.x] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2009] [Accepted: 11/25/2009] [Indexed: 11/27/2022] Open
Abstract
Aedes aegypti mosquitoes originated in Africa and are thought to have spread recently to Southeast Asia, where they are the major vector of dengue. Thirteen microsatellite loci were used to determine the genetic population structure of A. aegypti at a hierarchy of spatial scales encompassing 36 sites in Myanmar, Cambodia and Thailand, and two sites in Sri Lanka and Nigeria. Low, but significant, genetic structuring was found at all spatial scales (from 5 to >2000 km) and significant F IS values indicated genetic structuring even within 500 m. Spatially dependent genetic-clustering methods revealed that although spatial distance plays a role in shaping larger-scale population structure, it is not the only factor. Genetic heterogeneity in major port cities and genetic similarity of distant locations connected by major roads, suggest that human transportation routes have resulted in passive long-distance migration of A. aegypti. The restricted dispersal on a small spatial scale will make localized control efforts and sterile insect technology effective for dengue control. Conversely, preventing the establishment of insecticide resistance genes or spreading refractory genes in a genetic modification strategy would be challenging. These effects on vector control will depend on the relative strength of the opposing effects of passive dispersal.
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Affiliation(s)
- Thaung Hlaing
- Faculty of Life Sciences, University of Manchester Manchester, UK ; Medical Entomology Research Division, Department of Medical Research (Lower Myanmar) Yangon, Myanmar
| | - Willoughby Tun-Lin
- Medical Entomology Research Division, Department of Medical Research (Lower Myanmar) Yangon, Myanmar
| | - Pradya Somboon
- Department of Parasitology, Faculty of Medicine, Chiang Mai University Chiang Mai, Thailand
| | - Duong Socheat
- National Centre for Malaria, Parasitology and Entomology Phnom Penh, Cambodia
| | - To Setha
- National Centre for Malaria, Parasitology and Entomology Phnom Penh, Cambodia
| | - Sein Min
- Medical Entomology Research Division, Department of Medical Research (Lower Myanmar) Yangon, Myanmar
| | - Sein Thaung
- Medical Entomology Research Division, Department of Medical Research (Lower Myanmar) Yangon, Myanmar
| | - Okorie Anyaele
- Entomology Unit, Department of Zoology, University of Ibadan Ibadan, Nigeria
| | - Babaranda De Silva
- Department of Zoology, University of Sri Jayewardenepura Nugegoda, Sri Lanka
| | - Moh Seng Chang
- WHO - Western Pacific Regional Office Phnom Penh, Cambodia
| | - Anil Prakash
- Regional Malaria Research Centre, Indian Council of Medical Research Dibrugarh, Assam, India
| | | | - Catherine Walton
- Faculty of Life Sciences, University of Manchester Manchester, UK
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ENDERSBY NM, HOFFMANN AA, WHITE VL, LOWENSTEIN S, RITCHIE S, JOHNSON PH, RAPLEY LP, RYAN PA, NAM VS, YEN NT, KITTIYAPONG P, WEEKS AR. Genetic structure of Aedes aegypti in Australia and Vietnam revealed by microsatellite and exon primed intron crossing markers suggests feasibility of local control options. JOURNAL OF MEDICAL ENTOMOLOGY 2009; 46:1074-83. [PMID: 19769038 PMCID: PMC2782737 DOI: 10.1603/033.046.0514] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
The distribution of Aedes aegypti (L.) in Australia is currently restricted to northern Queensland, but it has been more extensive in the past. In this study, we evaluate the genetic structure of Ae. aegypti populations in Australia and Vietnam and consider genetic differentiation between mosquitoes from these areas and those from a population in Thailand. Six microsatellites and two exon primed intron crossing markers were used to assess isolation by distance across all populations and also within the Australian sample. Investigations of founder effects, amount of molecular variation between and within regions and comparison of F(ST) values among Australian and Vietnamese populations were made to assess the scale of movement ofAe. aegypti. Genetic control methods are under development for mosquito vector populations including the dengue vector Ae. aegypti. The success of these control methods will depend on the population structure of the target species including population size and rates of movement among populations. Releases of modified mosquitoes could target local populations that show a high degree of isolation from surrounding populations, potentially allowing new variants to become established in one region with eventual dispersal to other regions.
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Affiliation(s)
- N. M. ENDERSBY
- Centre for Environmental Stress and Adaptation Research, Department of Genetics, The University of Melbourne, Victoria 3010, Australia
| | - A. A. HOFFMANN
- Centre for Environmental Stress and Adaptation Research, Department of Genetics, The University of Melbourne, Victoria 3010, Australia
| | - V. L. WHITE
- Centre for Environmental Stress and Adaptation Research, Department of Genetics, The University of Melbourne, Victoria 3010, Australia
| | - S. LOWENSTEIN
- Centre for Environmental Stress and Adaptation Research, Department of Genetics, The University of Melbourne, Victoria 3010, Australia
| | - S. RITCHIE
- Tropical Population Health Unit, Queensland Health, Cairns, Queensland 4870, Australia
- School of Public Health and Tropical Medicine, James Cook University, Cairns, Queensland 4870, Australia
| | - P. H. JOHNSON
- Tropical Population Health Unit, Queensland Health, Cairns, Queensland 4870, Australia
- School of Public Health and Tropical Medicine, James Cook University, Cairns, Queensland 4870, Australia
| | - L. P. RAPLEY
- Tropical Population Health Unit, Queensland Health, Cairns, Queensland 4870, Australia
- School of Public Health and Tropical Medicine, James Cook University, Cairns, Queensland 4870, Australia
| | - P. A. RYAN
- Queensland Institute of Medical Research and Australian Centre for International and Tropical Health, P.O. Royal Brisbane Hospital, Queensland 4029, Australia
| | - V. S. NAM
- General Department of Preventive Medicine and Environmental Health, Ministry of Health, Lane 135 Nui Truc, Hanoi, Vietnam
| | - N. T. YEN
- National Institute of Hygiene and Epidemiology, 1 Yersin St., Hanoi, Vietnam
| | - P. KITTIYAPONG
- Center for Vectors and Vector-Borne Diseases and Department of Biology, Faculty of Science, Mahidol University, Bangkok, Thailand
| | - A. R. WEEKS
- Centre for Environmental Stress and Adaptation Research, Department of Genetics, The University of Melbourne, Victoria 3010, Australia
- Corresponding author,
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Kumar A, Boggula VR, Sundar S, Shasany AK, Dube A. Identification of genetic markers in sodium antimony gluconate (SAG) sensitive and resistant Indian clinical isolates of Leishmania donovani through amplified fragment length polymorphism (AFLP). Acta Trop 2009; 110:80-5. [PMID: 19283900 DOI: 10.1016/j.actatropica.2009.01.005] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Abstract
Sodium Antimony Gluconate (SAG) is currently used worldwide as the first-line drugs for the treatment of visceral leishmaniasis (VL) and cutaneous leishmaniasis (CL) since 1940s. Unfortunately, the resistance of Leishmania parasite to this drug is increasing in several parts of the world. The mechanism of drug resistance in clinical isolates is still not very clear. Earlier, we have established a differentiation between six clinical isolates as sensitive and resistant on the basis of their sensitivity to SAG in vitro and in vivo as well as expression of proteophosphoglycan contents. In this preliminary study, we have further analyzed these isolates on the basis of their genetic diversity, molecular variance and phylogenetic structure using for the first time, a fingerprinting approach--amplified fragment length polymorphism (AFLP). Altogether 2338 informative AFLP bands were generated using 10 selective primer combinations. Percentage of polymorphism was 55.35%. A number of unique AFLP markers (217) were also identified in these strains. It was deduced that a higher rate of variations occurred among Leishmania clinical isolates which indicate the shifting of drug sensitive nature of parasite towards resistant condition.
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Hlaing T, Tun-Lin W, Somboon P, Socheat D, Setha T, Min S, Chang MS, Walton C. Mitochondrial pseudogenes in the nuclear genome of Aedes aegypti mosquitoes: implications for past and future population genetic studies. BMC Genet 2009; 10:11. [PMID: 19267896 PMCID: PMC2660364 DOI: 10.1186/1471-2156-10-11] [Citation(s) in RCA: 60] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2008] [Accepted: 03/06/2009] [Indexed: 12/28/2022] Open
Abstract
Background Mitochondrial DNA (mtDNA) is widely used in population genetic and phylogenetic studies in animals. However, such studies can generate misleading results if the species concerned contain nuclear copies of mtDNA (Numts) as these may amplify in addition to, or even instead of, the authentic target mtDNA. The aim of this study was to determine if Numts are present in Aedes aegypti mosquitoes, to characterise any Numts detected, and to assess the utility of using mtDNA for population genetics studies in this species. Results BLAST searches revealed large numbers of Numts in the Ae. aegypti nuclear genome on 146 supercontigs. Although the majority are short (80% < 300 bp), some Numts are almost full length mtDNA copies. These long Numts are not due to misassembly of the nuclear genome sequence as the Numt-nuclear genome junctions could be recovered by amplification and sequencing. Numt evolution appears to be a complex process in Ae. aegypti with ongoing genomic integration, fragmentation and mutation and the secondary movement of Numts within the nuclear genome. The PCR amplification of the putative mtDNA nicotinamide adenine dinucleotide dehydrogenase subunit 4 (ND4) gene from 166 Southeast Asian Ae. aegypti mosquitoes generated a network with two highly divergent lineages (clade 1 and clade 2). Approximately 15% of the ND4 sequences were a composite of those from each clade indicating Numt amplification in addition to, or instead of, mtDNA. Clade 1 was shown to be composed at least partially of Numts by the removal of clade 1-specific bases from composite sequences following enrichment of the mtDNA. It is possible that all the clade 1 sequences in the network were Numts since the clade 2 sequences correspond to the known mitochondrial genome sequence and since all the individuals that produced clade 1 sequences were also found to contain clade 2 mtDNA-like sequences using clade 2-specific primers. However, either or both sets of clade sequences could have Numts since the BLAST searches revealed two long Numts that match clade 2 and one long Numt that matches clade 1. The substantial numbers of mutations in cloned ND4 PCR products also suggest there are both recently-derived clade 1 and clade 2 Numt sequences. Conclusion We conclude that Numts are prevalent in Ae. aegypti and that it is difficult to distinguish mtDNA sequences due to the presence of recently formed Numts. Given this, future population genetic or phylogenetic studies in Ae. aegypti should use nuclear, rather than mtDNA, markers.
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Affiliation(s)
- Thaung Hlaing
- Faculty of Life Sciences, University of Manchester, Oxford Road, Manchester, UK.
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Thaler R, Brandstätter A, Meraner A, Chabicovski M, Parson W, Zelger R, Dalla Via J, Dallinger R. Molecular phylogeny and population structure of the codling moth (Cydia pomonella) in Central Europe: II. AFLP analysis reflects human-aided local adaptation of a global pest species. Mol Phylogenet Evol 2008; 48:838-49. [DOI: 10.1016/j.ympev.2008.05.027] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2007] [Revised: 03/06/2008] [Accepted: 05/20/2008] [Indexed: 11/26/2022]
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da Costa-Ribeiro MCV, Lourenço-de-Oliveira R, Failloux AB. Higher genetic variation estimated by microsatellites compared to isoenzyme markers in Aedes aegypti from Rio de Janeiro. Mem Inst Oswaldo Cruz 2006; 101:917-21. [PMID: 17293988 DOI: 10.1590/s0074-02762006000800015] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2006] [Accepted: 11/01/2006] [Indexed: 11/22/2022] Open
Abstract
Aedes aegypti populations from five districts in Rio de Janeiro were analyzed using five microsatellites and six isoenzyme markers, to assess the amount of variation and patterns of gene flow at local levels. Microsatellite loci were polymorphic enough to detect genetic differentiation of populations collected at small geographic scales (e.g. within a city). Ae. aegypti populations were highly differentiated as well in the city center as in the outskirt. Thus, dengue virus propagation by mosquitoes could be as efficient in the urban area as in the outskirt of Rio de Janeiro, the main entry point of dengue in Brazil.
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SLOTMAN MA, KELLY NB, HARRINGTON LC, KITTHAWEE S, JONES JW, SCOTT TW, CACCONE A, POWELL JR. Polymorphic microsatellite markers for studies of Aedes aegypti (Diptera: Culicidae), the vector of dengue and yellow fever. ACTA ACUST UNITED AC 2006. [DOI: 10.1111/j.1471-8286.2006.01533.x] [Citation(s) in RCA: 63] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Paupy C, Orsoni A, Mousson L, Huber K. Comparisons of amplified fragment length polymorphism (AFLP), microsatellite, and isoenzyme markers: population genetics of Aedes aegypti (Diptera: Culicidae) from Phnom Penh (Cambodia). JOURNAL OF MEDICAL ENTOMOLOGY 2004; 41:664-671. [PMID: 15311458 DOI: 10.1603/0022-2585-41.4.664] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Aedes aegypti is the main vector of dengue viruses responsible for dengue hemorrhagic fever, which has become a major public health concern in tropical countries. Because vaccines are still under development, dengue prevention depends entirely on vector control. Knowledge of gene dispersal patterns is required to develop efficient vector control strategies. Here we report the use of amplified fragment length polymorphism (AFLP) to infer the genetic structure of Ae. aegypti populations at a local levels (Phnom Penh, Cambodia). The amount of variation and patterns of gene flow detected are compared with those obtained with two other more widely used markers, isoenzymes and microsatellites. The pattern of differentiation depicted by AFLP data were confirmed by comparison of the Fst values of the three markers. Even though Fst values estimated with AFLP markers are three- to fivefold higher than those estimated with isoenzymes or microsatellites, these different markers reveal the same population structure. This technique is useful for population genetic studies of Ae. aegypti and is especially advantageous when few individuals specimens are available because of the ability to AFLP to simultaneously amplify large numbers of polymorphic DNA fragments.
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Affiliation(s)
- Christophe Paupy
- Unité d'Ecologie des Systèmes Vectoriels, Institut Pasteur, Paris, France
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Abstract
Among arthropod diseases affecting animals, larval infections - myiases - of domestic and wild animals have been considered important since ancient times. Besides the significant economic losses to livestock worldwide, myiasis-causing larvae have attracted the attention of scientists because some parasitise humans and are of interest in forensic entomology. In the past two decades, the biology, epidemiology, immunology, immunodiagnosis and control methods of myiasis-causing larvae have been focused on and more recently the number of molecular studies have also begun to increase. The 'new technologies' (i.e. molecular biology) are being used to study taxonomy, phylogenesis, molecular identification, diagnosis (recombinant antigens) and vaccination strategies. In particular, more in depth molecular studies have now been performed on Sarcophagidae, Calliphoridae and flies of the Oestridae sister group. This review discusses the most topical issues and recent studies on myiasis-causing larvae using molecular approaches. In the first part, PCR-based techniques and the genes that have already been analysed, or are potentially useful for the molecular phylogenesis and identification of myiasis-causing larvae, are described. The second section deals with the more recent advances concerning taxonomy, phylogenetics, population studies, molecular identification, diagnosis and vaccination.
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Affiliation(s)
- Domenico Otranto
- Faculty of Veterinary Medicine, University of Bari, PO Box 7, 70010, Valenzano, Bari, Italy.
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Abstract
Molecular techniques are increasingly being used to study the ecology of a variety of organisms. These techniques represent important tools for the study of the systematics, population genetics, biogeography and ecology of parasites. Here, we review the techniques that have been employed to study the ecology and systematics of parasites (including bacteria and viruses). Particular emphasis is placed on the techniques of isoenzyme electrophoresis, in situ hybridisation and nucleic acid amplification to characterise parasite/microbial communities. The application of these techniques will be exemplified using ticks, bacterial endosymbionts and parasitic protozoa.
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Affiliation(s)
- Paul T Monis
- Microbiology Unit, Australian Water Quality Centre, Private Mail Bag 3, South Australia 5108, Salisbury, Australia.
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Ravel S, Hervé JP, Diarrassouba S, Kone A, Cuny G. Microsatellite markers for population genetic studies in Aedes aegypti (Diptera: Culicidae) from Côte d'Ivoire: evidence for a microgeographic genetic differentiation of mosquitoes from Bouaké. Acta Trop 2002; 82:39-49. [PMID: 11904102 DOI: 10.1016/s0001-706x(02)00028-1] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
Abstract
In West Africa, Aedes aegypti (Diptera: Culicidae) (Linnaeus, C., 1762. Zweyter Theil, enhalt Beschreibungen veschiedener wichtiger Naturalien. In: Hasselquist, F. (Ed.), Reise nach Palastina in den Jahren von 1749 bis 1752, Rostock, Germany, pp. 267-606) represents the principal vector of yellow fever. This study reports the use of microsatellite markers to characterise various A. aegypti populations from Côte d'Ivoire according to a north-south transect, and to perform a temporal genetic survey of the mosquitoes. Three microsatellite loci were used to analyse individuals from four different places: Kabolo, Bouaké, and two different districts of Abidjan. We found that the four populations are genetically distinct except the two Abidjan populations. In the Bouaké population, the coexistence of two cryptic species, not morphologically distinguishable, seems to account for the extensive heterozygote deficiency observed. Comparison of mosquitoes from Bouaké 1 year apart indicated that a dramatic change occurred in the structuring of this population over time. Taken together these results indicate that microsatellite markers could be useful for identifying various populations of A. aegypti on a microgeographic scale and to assess for temporal variation within mosquito populations.
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Affiliation(s)
- S Ravel
- Laboratoire de Recherche et de Coordination sur les Trypanosomoses IRD-CIRAD, Programme Santé Animale, TA/30G, Campus International de Baillarguet, 34398 Cédex 5, Montpellier, France.
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