Metal-mediated oxidation of guanines in DNA and RNA: a comparison of cobalt(II), nickel(II) and copper(II) complexes

An insight into the role of experimental parameters in advanced oxidation process applied for pharmaceutical degradation

The advanced oxidation process (AOP) is an efficient method to treat recalcitrance pollutants such as pharmaceutical compounds. The essential physicochemical factors in AOP experiments significantly influence the efficiency, speed, cost, and safety of byproducts of the treatment process. In this review, we collected recent articles that investigated the elimination of pharmaceutical compounds by various AOP systems in a water medium, and then we provide an overview of AOP systems, the formation mechanisms of active radicals or reactive oxygen species (ROS), and their detection methods. Then, we discussed the role of the main physicochemical parameters (pH, chemical interference, temperature, catalyst, pollutant concentration, and oxidant concentration) in a critical way. We gained insight into the most frequent scenarios for the proper and improper physicochemical parameters for the degradation of pharmaceutical compounds. Also, we mentioned the main factors that restrict the application of AOP systems in a commercial way. We demonstrated that a proper adjustment of AOP experimental parameters resulted in promoting the treatment performance, decreasing the treatment cost and the treatment operation time, increasing the safeness of the system products, and improving the reaction stoichiometric efficiency. The outcomes of this review will be beneficial for future AOP applicants to improve the pharmaceutical compound treatment by providing a deeper understanding of the role of the parameters. In addition, the proper application of physicochemical parameters in AOP systems acts to track the sustainable development goals (SDGs).

Expression Microdissection for the Analysis of miRNA in a Single-Cell Type

Cell-specific microRNA (miRNA) expression estimates are important in characterizing the localization of miRNA signaling within tissues. Much of these data are obtained from cultured cells, a process known to significantly alter miRNA expression levels. Thus, our knowledge of in vivo cell miRNA expression estimates is poor. We previously demonstrated expression microdissection-miRNA-sequencing (xMD-miRNA-seq) to acquire in vivo estimates, directly from formalin-fixed tissues, albeit with a limited yield. In this study, we optimized each step of the xMD process, including tissue retrieval, tissue transfer, film preparation, and RNA isolation, to increase RNA yields and ultimately show strong enrichment for in vivo miRNA expression by qPCR array. These method improvements, such as the development of a noncrosslinked ethylene vinyl acetate membrane, resulted in a 23- to 45-fold increase in miRNA yield, depending on the cell type. By qPCR, miR-200a increased by 14-fold in xMD-derived small intestine epithelial cells, with a concurrent 336-fold reduction in miR-143 relative to the matched nondissected duodenal tissue. xMD is now an optimized method to obtain robust in vivo miRNA expression estimates from cells. xMD will allow formalin-fixed tissues from surgical pathology archives to make theragnostic biomarker discoveries.

Photodegradation of oxytetracycline by UV-assisted persulfate and percarbonate processes: kinetics, influencing factors, anion effect, and radical species

In this study, the performance of ultraviolet (UV)-assisted persulfate (PS) and percarbonate (PC) oxidation processes in oxytetracycline (OTC) removal was investigated. UVC lamps were used for the photolysis process and the effect of operating parameters (initial pH, oxidant dose, initial OTC concentration, UV intensity) on OTC removal efficiency was determined. Control experiments were carried out at pH 5.5 and 32 W UV power for 60 min by adding a 4 mM oxidant with 10 mg/L initial OTC concentration. The OTC removal efficiency obtained as a result of only photolysis was 17.3% and the removal efficiency obtained by PS and PC oxidation alone was 18.3% and 12.7%, respectively. The OTC removal efficiencies increased in the combined processes and reached 58.1% and 69.9% for the UV-PS and UV-PC processes, respectively. The reaction rates of the processes were ranked as UV-PC > UV-PS > PS > UV > PC. In the UV-PS and UV-PC processes, the highest removal efficiencies were achieved at alkaline pH values. The OTC removal efficiency was increased with the increase in oxidant dose; however, the efficiency decreased after a certain dose due to the scavenging effect. The removal efficiency also increased as the initial OTC concentration decreased. The UV intensity had a positive effect on OTC removal efficiency. The effect of the water matrix on OTC removal efficiency was investigated while the dominant radical types were determined in UV-assisted processes. The EE/O values for the UV-PS and UV-PC processes were calculated as 211 kWh/m³ and 153 kWh/m³, respectively for 60 min of reaction time. Although similar removal efficiencies were obtained with both UV-assisted processes, the UV-PC process steps forward in terms of being a novel, environmentally friendly, more economic, and promising technology for OTC removal.

Wastewater treatment by anodic oxidation in electrochemical advanced oxidation process: Advance in mechanism, direct and indirect oxidation detection methods

Electrochemical Advanced Oxidation Process (EAOP) has been applied to the degradation of refractory pollutants in wastewater due to its strong oxidation capacity, high degradation efficiency, simple operation, and mild reaction. Among electrochemical processes, anodic oxidation (AO) is the most widely used and its mechanism is mainly divided into direct oxidation and indirect oxidation. Direct oxidation means that pollutants are oxidized at the anode by direct electron transfer. Indirect oxidation refers to the generation of active species during the electrolytic reaction, which acts on pollutants. The mechanism of AO process is controlled by many factors, including electrode type, electrocatalyst material, wastewater composition, pH, applied current and voltage levels. It is very important to explore the reaction mechanism of electrochemical treatment, which determines the efficiency of the reaction, the products of the reaction, and the extent of reaction. This paper firstly reviews the current research progress on the mechanism of AO process, and summarizes in detail the different mechanisms caused by influencing factors under common AO process. Then, strategies and methods to distinguish direct oxidation and indirect oxidation mechanisms are reviewed, such as intermediate product analysis, electrochemical test analysis, active species detection, theoretical calculation, and the limitations of these methods are analyzed. Finally some suggestions are put forward for the study of the mechanism of electrochemical advanced oxidation.

Peroxymonosulfate activation by cobalt(II) for degradation of organic contaminants via high-valent cobalt-oxo and radical species

The reaction between Co(II) and PMS is an appealing advanced oxidation process (AOP), where multiple reactive oxidizing species (ROS) including high-valent cobalt-oxo [Co(IV)], sulfate radical (SO₄^•-), and hydroxy radical (^•OH) are intertwined together for degrading pollutants. However, the relative contribution of various ROS and the influences of nontarget matrix constituents, on the degradation process are still unclear and yet to be answered. In this study, we confirmed the generation Co(IV) as dominant intermediate oxidant at acid medium by using methyl phenyl sulfoxide (PMSO) as a probe compound. Using chemical scavenging methods, the role of SO₄^•- and ^•OH was also identified, and the major ROS were converted from Co(IV) to radical species with the increase of PMS/Co(II) molar ratio as well as pH value. In addition, we found that their contributions to the abatement of organic contaminants are highly dependent on both their available amount and substrate-specific reactivity. Generally, organic substrates with low ionization potential (IP) are prone to react with Co(IV). More interestingly, in contrast to radical-based oxidation, Co(IV) exhibited the great resistance to humic acid (HA) and background ions. This study might shed new light on the PMS activation by cobalt(II) for degradation of organic contaminants.

Calcium Sulfite Solids Activated by Iron for Enhancing As(III) Oxidation in Water

Desulfurized gypsum (DG) as a soil modifier imparts it with bulk solid sulfite. The Fe(III)-sulfite process in the liquid phase has shown great potential for the rapid removal of As(III), but the performance and mechanism of this process using DG as a sulfite source in aqueous solution remains unclear. In this work, employing solid CaSO₃ as a source of SO₃^2-, we have studied the effects of different conditions (e.g., pH, Fe dosage, sulfite dosage) on As(III) oxidation in the Fe(III)-CaSO₃ system. The results show that 72.1% of As(III) was removed from solution by centrifugal treatment for 60 min at near-neutral pH. Quenching experiments have indicated that oxidation efficiencies of As(III) are due at 67.5% to HO^•, 17.5% to SO₅^•- and 15% to SO₄^•-. This finding may have promising implications in developing a new cost-effective technology for the treatment of arsenic-containing water using DG.

Gas Therapy: An Emerging “Green” Strategy for Anticancer Therapeutics

As an emerging area, gas therapy has attracted more and more attention in treating many diseases including cancer. The fabrication of stimuli‐responsive delivery systems with on‐demand release behavior is very promising for precision gas therapy, which can obtain optimal therapeutic performance without gas poisoning risks. In this review, the authors introduce the recent progress in the preparation of different kinds of gas carriers for efficient delivery of gaseous molecules (NO, H2S, CO, O2). Particularly, in order to achieve targeted accumulation of gaseous molecules in tumor tissues, gaseous molecules–integrated nanoparticles were constructed. Most importantly, by combination of gas therapy with other therapeutic modalities such as chemotherapy, photodynamic therapy (PDT), and radiotherapy, various multifunctional nanocarriers have been designed for synergistic cancer therapy. Especially, the recent developments of multifunctional gas‐carrying nanocarriers for synergistic cancer therapy are discussed in detail.

Relationships between physiological characteristics and trace metal body burdens of banded garden spiders Argiope trifasciata (Araneae, Araneidae)

Banded garden spiders (Argiope trifasciata) were collected at the Ballona Wetlands, a metal contaminated salt marsh. The relationship between spider body size and individual metal loads was investigated. Biochemical markers were identified in spider fecal material and found to correlate to body metal levels. Body metal dry weight concentrations of Cd, Cr, Cu, Zn and total metals in female A. trifasciata exhibited distinct patterns of spatial and annual variation during 2006 and 2007. Spider body size was homogeneous across sites in both years, while increased Cd and Cr concentrations were sometimes associated with a reduction in spider size, though the influence of Cr was quite minor. Spiders with higher body Cu levels showed a reduction in peak area for hypoxanthine and an un-identified component in fecal material chromatograms. Spatial and annual differences in metal bioaccumulation are likely mediated by variation in site-specific environmental parameters and rainfall, while the negative relationships between body size and metal levels are presumably a consequence of a spider's expenditure of energy for metal tolerance mechanisms vs. foraging and growth. Finally, correlating body metal levels with excreta products constitutes a novel method to non-invasively predict metal levels in spiders.

Metallotherapeutics: novel strategies in drug design

A new paradigm for drug activity is presented, which includes both recognition and subsequent irreversible inactivation of therapeutic targets. Application to both RNA and protein biomolecules has been demonstrated. In contrast to RNA targets that are subject to strand scission chemistry mediated by ribose H-atom abstraction, proteins appear to be inactivated either through oxidative damage to amino acid side chains around the enzyme active site, or by backbone hydrolysis.

Radical generation by the interaction of transition metals with common oxidants

Nine transition metals were tested for the activation of three oxidants and the generation of inorganic radical species such as sulfate, peroxymonosulfate, and hydroxyl radicals. From the 27 combinations, 14 M/Ox couples demonstrated significant reactivity toward transforming a model organic substrate such as 2,4-dichlorophenol and are further discussed here. It was found that Co(II) and Ru(III) are the best metal catalysts for the activation of peroxymonosulfate. As expected on the basis of the Fenton reagent, Fe(III) and Fe(II) were the most efficient transition metals for the activation of hydrogen peroxide. Finally, Ag(I) showed the best results toward activating persulfate. Quenching studies with specific alcohols (tert-butyl alcohol and ethanol) were also performed to identify the primary radical species formed from the reactive M/Ox interactions. The determination of these transient species allowed us to postulate the rate-determining step of the redox reactions taking place when a metal is coupled with an oxidant in aqueous solution. It was found that when Co(II), Ru(III), and Fe(II) interact with peroxymonosulfate, freely diffusible sulfate radicals are the primary species formed. The same was proven for the interaction of Ag(I) with persulfate, but in this case caged or bound to the metal sulfate radicals might be formed as well. The conjunction of Ce(III), Mn(II), and Ni(II) with peroxymonosulfate showed also to generate caged or bound to the metal sulfate radicals. A combination of sulfate and hydroxyl radicals was formed from the conjunction of V(III) with peroxymonosulfate and from Fe(II) with persulfate. Finally, the conjunction of Fe(III), Fe(II), and Ru(III) with hydrogen peroxide led primarily to the generation of hydroxyl radicals. It is also suggested here that the redox behavior of a particular metal in solution cannot be predicted based exclusively on its size and charge. Additional phenomena such as metal hydrolysis as well as complexation with other counterions present in solution might affect the thermodynamics of the overall process and are further discussed here.

Sulfite induced autoxidation of Ni(ii) and Co(ii) tetraglycine complexes. Spectrophotometric and rotating ring-disc voltammetric studies

The oxidation of Ni(II) and Co(II) tetraglycine complexes in borate buffer aqueous solution, by dissolved oxygen, is strongly accelerated by sulfite. The formation of Ni(III) and Co(III) complexes with maximum absorbances at 327 and 265 nm, respectively, was followed by spectrophotometric measurements. Ni(III) formation was also characterized by voltammetry at low temperatures, whose anodic and cathodic components were observed in the recorded voltammograms. Spectra and rotating ring-disc voltammograms, recorded at various rotation speed values, showed that the Ni(III) species decomposes. The electrochemical process related to the couple Co(II)/Co(III), in a medium containing tetraglycine, was not reversible. In both Ni(II) and Co(II) complexes the metal ion oxidation in the presence of oxygen and sulfite involves the reduction of some initial Ni(III) or Co(III) by sulfite to produce the SO(3).- radical, which rapidly reacts with dissolved oxygen to produce SO(5).-, which then oxidizes Ni(II) or Co(II).

Efficient and specific strand scission of DNA by a dinuclear copper complex: comparative reactivity of complexes with linked tris(2-pyridylmethyl)amine moieties

The compound [Cu(II)(2)(D(1))(H(2)O)(2)](ClO(4))(4) (D(1) = dinucleating ligand with two tris(2-pyridylmethyl)amine units covalently linked in their 5-pyridyl positions by a -CH(2)CH(2)- bridge) selectively promotes cleavage of DNA on oligonucleotide strands that extend from the 3' side of frayed duplex structures at a site two residues displaced from the junction. The minimal requirements for reaction include a guanine in the n (i.e. first unpaired) position of the 3' overhang adjacent to the cleavage site and an adenine in the n position on the 5' overhang. Recognition and strand scission are independent of the nucleobase at the cleavage site. The necessary presence of both a reductant and dioxygen indicates that the intermediate responsible for cleavage is produced by the activation of dioxygen by a copper(I) form of the dinuclear complex. The lack of sensitivity to radical quenching agents and the high level of site selectivity in scission suggest a mechanism that does not involve a diffusible radical species. The multiple metal center exhibits a synergy to promote efficient cleavage as compared to the action of a mononuclear analogue [Cu(II)(TMPA)(H(2)O)](ClO(4))(2) (TMPA = tris(2-pyridylmethyl)amine) and [Cu(OP)(2)](2+) (OP = 1,10-phenanthroline) at equivalent copper ion concentrations. The dinuclear complex, [Cu(II)(2)(D(1))(H(2)O)(2)](ClO(4))(4), is even capable of mediating efficient specific strand scission at concentrations where [Cu(OP)(2)](2+) does not detectably modify DNA. The unique coordination and reactivity properties of [Cu(II)(2)(D(1))(H(2)O)(2)](ClO(4))(4) are critical for its efficiency and site selectivity since an analogue, [Cu(II)(2)(DO)(Cl(2))](ClO(4))(2), where DO is a dinucleating ligand very similar to D(1), but with a -CH(2)OCH(2)- bridge, exhibits only nonselective cleavage of DNA. The differences in the reactivity of these two complexes with DNA and their previously established interaction with dioxygen suggest that specific strand scission is a function of the orientation of a reactive intermediate.

Characterization of the Ni(III) intermediate in the reaction of (1,4,8,11-tetraazacyclotetradecane)nickel(II) perchlorate with KHSO5: implications to the mechanism of oxidative DNA modification

We report the detection and characterization of the Ni(III) intermediates generated by reaction of (1,4,8,11-tetraazacyclotetradecane)nickel(II) perchlorate with KHSO5. Four Ni(III) intermediates can be trapped or detected through variation in Cl- or KHSO5 concentrations. Upon oxidation of [Ni(cyclam)]2+ by 2.5 equiv of KHSO5, deprotonation of the cyclam ligand generates two red Ni(III) species with lambda max = 530 nm and g perpendicular = 2.20 and g parallel = 2.02 or g perpendicular = 2.16 and g parallel = 2.01 for the axial 4-coordinate or 6-coordinate dichloride species, respectively. These forms decay to Ni(II) products via complex ligand oxidation mechanisms. The Ni(III) dichloride species can be reprotonated and subsequently binds to DNA via an outer-sphere interaction as evidenced by the inverted sign of the CD signal near 400 nm. Cumulatively, the results indicate that the Ni(III) center is coordinately saturated under excess chloride conditions but is still able to interact with DNA substrates. This suggests alternative mechanistic pathways for DNA modification by reaction of [Ni(cyclam)]2+ with KHSO5 and possibly other Ni(II) complexes as well.