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Stout CN, Wasfy NM, Chen F, Renata H. Charting the Evolution of Chemoenzymatic Strategies in the Syntheses of Complex Natural Products. J Am Chem Soc 2023; 145:18161-18181. [PMID: 37553092 PMCID: PMC11107883 DOI: 10.1021/jacs.3c03422] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/10/2023]
Abstract
Bolstered by recent advances in bioinformatics, genetics, and enzyme engineering, the field of chemoenzymatic synthesis has enjoyed a rapid increase in popularity and utility. This Perspective explores the integration of enzymes into multistep chemical syntheses, highlighting the unique potential of biocatalytic transformations to streamline the synthesis of complex natural products. In particular, we identify four primary conceptual approaches to chemoenzymatic synthesis and illustrate each with a number of landmark case studies. Future opportunities and challenges are also discussed.
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Affiliation(s)
- Carter N. Stout
- Skaggs Doctoral Program in the Chemical and Biological Sciences, Scripps Research, La Jolla, CA 92037, USA
| | - Nour M. Wasfy
- Department of Chemistry, BioScience Research Collaborative, Rice University, Houston, Texas, 77005, United States
| | - Fang Chen
- Department of Chemistry, BioScience Research Collaborative, Rice University, Houston, Texas, 77005, United States
| | - Hans Renata
- Department of Chemistry, BioScience Research Collaborative, Rice University, Houston, Texas, 77005, United States
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2
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Madarász Á, Berta D, Paton RS. Development of a True Transition State Force Field from Quantum Mechanical Calculations. J Chem Theory Comput 2016; 12:1833-44. [PMID: 26925858 DOI: 10.1021/acs.jctc.5b01237] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Transition state force fields (TSFF) treated the TS structure as an artificial minimum on the potential energy surface in the past decades. The necessary parameters were developed either manually or by the Quantum-to-molecular mechanics method (Q2MM). In contrast with these approaches, here we propose to model the TS structures as genuine saddle points at the molecular mechanics level. Different methods were tested on small model systems of general chemical reactions such as protonation, nucleophilic attack, and substitution, and the new procedure led to more accurate models than the Q2MM-type parametrization. To demonstrate the practicality of our approach, transferrable parameters have been developed for Mo-catalyzed olefin metathesis using quantum mechanical properties as reference data. Based on the proposed strategy, any force field can be extended with true transition state force field (TTSFF) parameters, and they can be readily applied in several molecular mechanics programs as well.
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Affiliation(s)
- Ádám Madarász
- Research Center for Natural Sciences, Hungarian Academy of Sciences , Magyar Tudosok Korutja 2, H-1117 Budapest, Hungary
| | - Dénes Berta
- Research Center for Natural Sciences, Hungarian Academy of Sciences , Magyar Tudosok Korutja 2, H-1117 Budapest, Hungary
| | - Robert S Paton
- Chemistry Research Laboratory, University of Oxford , Mansfield Road, Oxford OX1 3TA, U.K.,Physical and Theoretical Chemistry Laboratory, University of Oxford , South Parks Road, Oxford OX1 3QZ, U.K
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3
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Ward DE, Kundu D, Biniaz M, Jana S. A Systematic Study of the Effects of Relative Configuration, Protecting Group, and Enolate Type on the Diastereoselectivities of Aldol Reactions of a Chiral Ethyl Ketone with 2-Methylpropanal. J Org Chem 2014; 79:6868-94. [DOI: 10.1021/jo500927x] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Dale E. Ward
- Department of Chemistry, University of Saskatchewan, 110
Science Place, Saskatoon, Saskatchewan S7N 5C9, Canada
| | - Diptarghya Kundu
- Department of Chemistry, University of Saskatchewan, 110
Science Place, Saskatoon, Saskatchewan S7N 5C9, Canada
| | - Mojtaba Biniaz
- Department of Chemistry, University of Saskatchewan, 110
Science Place, Saskatoon, Saskatchewan S7N 5C9, Canada
| | - Sushital Jana
- Department of Chemistry, University of Saskatchewan, 110
Science Place, Saskatoon, Saskatchewan S7N 5C9, Canada
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4
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Jung ME, Salehi-Rad R. Total synthesis of auripyrone A using a tandem non-aldol aldol/Paterson aldol process as a key step. Angew Chem Int Ed Engl 2010; 48:8766-9. [PMID: 19824033 DOI: 10.1002/anie.200904607] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Michael E Jung
- Department of Chemistry and Biochemistry, University of California, Los Angeles, 405 Hilgard Ave, Los Angeles, CA 90095-1569, USA.
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5
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Jung M, Salehi-Rad R. Total Synthesis of Auripyrone A Using a Tandem Non-Aldol Aldol/Paterson Aldol Process as a Key Step. Angew Chem Int Ed Engl 2009. [DOI: 10.1002/ange.200904607] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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6
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Dunetz JR, Julian LD, Newcom JS, Roush WR. Total syntheses of (+)-tedanolide and (+)-13-deoxytedanolide. J Am Chem Soc 2008; 130:16407-16. [PMID: 18980317 PMCID: PMC2645944 DOI: 10.1021/ja8063205] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Convergent total syntheses of the potent cytotoxins (+)-tedanolide (1) and (+)-13-deoxytedanolide (2) are described. The carbon framework of these compounds was assembled via a stereoselective aldol reaction that unifies the C(1)-C(12) ketone fragment 5 with a C(13)-C(23) aldehyde fragment 6 (for 13-deoxytedanolide) or 52 (for tedanolide). Multiple obstacles were encountered en route to (+)-1 and (+)-2 that required very careful selection and orchestration of the stereochemistry and functionality of key intermediates. Chief among these issues was the remarkable stability and lack of reactivity of hemiketals 33b and 34 that prevented the tedanolide synthesis from being completed from aldol 4. Key to the successful completion of the tedanolide synthesis was the observation that the 13-deoxy hemiketal 36 could be oxidized to C(11,15)-diketone 38 en route to 13-deoxytedanolide. This led to the decision to pursue the tedanolide synthesis via C(15)-(S)-epimers, since this stereochemical change would destabilize the hemiketal that plagued the attempted synthesis of tedanolide via C(15)-(R) intermediates. However, use of C(15)-(S)-configured intermediates required that the side-chain epoxide be introduced very late in the synthesis, owing to the ease with which the C(15)-(S)-OH cyclized onto the epoxide of intermediate 50.
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Affiliation(s)
- Joshua R Dunetz
- Department of Chemistry, Scripps Florida, Jupiter, Florida 33458, USA
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7
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Díaz-Oltra S, Carda M, Murga J, Falomir E, Marco J. Aldol Reactions between L-Erythrulose Derivatives and Chiral α-Amino and α-Fluoro Aldehydes: Competition between Felkin-Anh and Cornforth Transition States. Chemistry 2008; 14:9240-54. [DOI: 10.1002/chem.200800956] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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8
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9
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Dunetz JR, Roush WR. Concerning the synthesis of the tedanolide C(13)-C(23) fragment via anti-aldol reaction. Org Lett 2008; 10:2059-62. [PMID: 18422319 DOI: 10.1021/ol800546g] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Synthesis of C(13)-C(23) aldehyde 4, an important intermediate in a planned total synthesis of tedanolide, is described. The stereoselectivity of the key anti-aldol reaction of aldehyde 5 and ketone 6 (en route to 4) perfectly tracks the enantiomeric purity of 5. It is demonstrated that aldehyde 24, a precursor of 5, undergoes facile epimerization during a Swern oxidation and stabilized ylide olefination sequence.
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Affiliation(s)
- Joshua R Dunetz
- Department of Chemistry, Scripps Florida, Jupiter, Florida 33458, USA
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10
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Stereo-controlled synthesis of prelasalocid, a key precursor proposed in the biosynthesis of polyether antibiotic lasalocid A. Tetrahedron Lett 2008. [DOI: 10.1016/j.tetlet.2007.12.003] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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11
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Appendix 1: Published Force Field Parameters. REVIEWS IN COMPUTATIONAL CHEMISTRY 2007. [DOI: 10.1002/9780470125830.ch6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register]
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12
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Natural Product-Guided Synthesis of a Spiroacetal Collection Reveals Modulators of Tubulin Cytoskeleton Integrity. European J Org Chem 2005. [DOI: 10.1002/ejoc.200500605] [Citation(s) in RCA: 62] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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13
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Dias LC, de Sousa MA. Synthetic studies directed toward the total synthesis of dolabriferol. Tetrahedron Lett 2003. [DOI: 10.1016/s0040-4039(03)01351-0] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Murga J, Falomir E, González F, Carda M, Marco J. Influence of the protecting groups on the syn/anti stereoselectivity of boron aldol additions with erythrulose derivatives. A theoretical and experimental study. Tetrahedron 2002. [DOI: 10.1016/s0040-4020(02)01279-6] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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15
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Kozlowski MC, Panda M. Computer-aided design of chiral ligands. Part I. Database search methods to identify chiral ligand types for asymmetric reactions. J Mol Graph Model 2002; 20:399-409. [PMID: 11885961 DOI: 10.1016/s1093-3263(01)00138-3] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The utility of database searching to identify chiral ligand motifs is outlined. The key elements of three known chiral ligands have been described as bond vectors. The CAVEAT program was then used to screen the Cambridge Structural Database (CSD), portions of the Chemical Abstracts Services three-dimensional database (CAS-3D), and the TRIAD tricyclic structure database for scaffolds containing these elements. Scaffolds corresponding to the known starting points were identified indicating that this method can be used to identify chiral ligand structural motifs. In addition, alternate structural motifs were found that suggested alternative possible ligands.
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Affiliation(s)
- Marisa C Kozlowski
- Department of Chemistry, Roy and Diana Vagelos Laboratories, University of Pennsylvania, Philadelphia 19104, USA.
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16
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Boron-mediated aldol reactions of ethyl α-(N,N)-dibenzylamino ketones: control of enolisation geometry and aldehyde π-facial selectivity. Tetrahedron Lett 2001. [DOI: 10.1016/s0040-4039(01)01982-7] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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17
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18
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Williams DR, Turske RA. Construction of 4-hydroxy-2-pyridinones. Total synthesis of (+)-sambutoxin. Org Lett 2000; 2:3217-20. [PMID: 11009385 DOI: 10.1021/ol006410+] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Total synthesis of (+)-sambutoxin has been achieved, establishing the relative and absolute stereochemistry of the naturally occurring mycotoxin. Efforts feature methodology for enantiocontrolled construction of 1,3-anti-dimethyl arrays and a novel Saegusa oxidation to provide a pyridinone methide leading to formation of the central dihydropyran ring.
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Affiliation(s)
- D R Williams
- Department of Chemistry, Indiana University, 800 East Kirkwood Avenue, Bloomington, Indiana 47405-7102, USA.
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19
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Enolization of chiral alpha-silyloxy ketones with dicyclohexylchloroborane. Application to stereoselective aldol reactions. Org Lett 2000; 2:2599-602. [PMID: 10990406 DOI: 10.1021/ol006109t] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
[reaction: see text]Comprehensive analysis of the enolization of alpha-silyloxyketones by Chx2BCl/R3N has allowed us to design stereoselective Chx2BCl-mediated aldol processes that afford syn or anti aldol products and to disclose a hypothesis that accounts for the subtle effects that determine their enolization.
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20
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Carda M, Murga J, Falomir E, González F, Marco J. Stereoselective synthesis of syn-α-methyl-β-hydroxy esters. ACTA ACUST UNITED AC 2000. [DOI: 10.1016/s0957-4166(00)00274-3] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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21
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Nicolaou KC, Murphy F, Barluenga S, Ohshima T, Wei H, Xu J, Gray DLF, Baudoin O. Total Synthesis of the Novel Immunosuppressant Sanglifehrin A. J Am Chem Soc 2000. [DOI: 10.1021/ja994285v] [Citation(s) in RCA: 77] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- K. C. Nicolaou
- Contribution from the Department of Chemistry and The Skaggs Institute for Chemical Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California 92037, and Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093
| | - F. Murphy
- Contribution from the Department of Chemistry and The Skaggs Institute for Chemical Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California 92037, and Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093
| | - S. Barluenga
- Contribution from the Department of Chemistry and The Skaggs Institute for Chemical Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California 92037, and Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093
| | - T. Ohshima
- Contribution from the Department of Chemistry and The Skaggs Institute for Chemical Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California 92037, and Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093
| | - H. Wei
- Contribution from the Department of Chemistry and The Skaggs Institute for Chemical Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California 92037, and Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093
| | - J. Xu
- Contribution from the Department of Chemistry and The Skaggs Institute for Chemical Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California 92037, and Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093
| | - D. L. F. Gray
- Contribution from the Department of Chemistry and The Skaggs Institute for Chemical Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California 92037, and Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093
| | - O. Baudoin
- Contribution from the Department of Chemistry and The Skaggs Institute for Chemical Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California 92037, and Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093
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22
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Carda M, Murga J, Falomir E, González F, Marco J. Aldol Reactions with Erythrulose Derivatives: Stereoselective Synthesis of Differentially Protected syn -α,β-Dihydroxy Esters. Tetrahedron 2000. [DOI: 10.1016/s0040-4020(99)01041-8] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/16/2022]
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23
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24
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25
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26
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The rational design and systematic analysis of asymmetric aldol reactions using enol borinates: Applications of transition state computer modelling. ACTA ACUST UNITED AC 1995. [DOI: 10.1016/0957-4166(95)00343-n] [Citation(s) in RCA: 61] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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27
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Gustin DJ, VanNieuwenhze MS, Roush WR. Diastereoselective aldol reactions of chiral aldehydes and chiral methyl ketones: Dependence of stereoselectivity on the metal enolate, the aldehyde 2,3-stereochemistry, and the aldehyde β-alkoxy protecting group. Tetrahedron Lett 1995. [DOI: 10.1016/0040-4039(95)00626-n] [Citation(s) in RCA: 23] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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28
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Bernardi A, Gennari C, Goodman JM, Leue V, Paterson I. Mechanistic insights from ab initio calculations on a nitrogen analogue of the boron-mediated aldol reaction. Tetrahedron 1995. [DOI: 10.1016/0040-4020(95)00170-d] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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29
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Studies in polypropionate synthesis: High π-face selectivity in syn and anti aldol reactions of chiral boron enolates of lactate-derived ketones. Tetrahedron Lett 1994. [DOI: 10.1016/0040-4039(94)88434-x] [Citation(s) in RCA: 124] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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30
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Bernardi A, Comotti A, Gennari C, Hewkin CT, Goodman JM, Schlapbach A, Paterson I. Computer-assisted design of chiral boron enolates: The role of ate complexes in determining aldol stereoselectivity. Tetrahedron 1994. [DOI: 10.1016/s0040-4020(01)80834-6] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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31
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Paterson I, Wren SP. Studies towards the total synthesis of the marine-derived immunosuppressant discodermolide; asymmetric synthesis of a C1–C8δ-lactone subunit. ACTA ACUST UNITED AC 1993. [DOI: 10.1039/c39930001790] [Citation(s) in RCA: 38] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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32
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Braun M, Sacha H. Recent advances in Stereoselective Aldol Reactions of ester and thioester enolates. ACTA ACUST UNITED AC 1993. [DOI: 10.1002/prac.19933350802] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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