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Zhang Y, Ding J, Liu C, Luo S, Gao X, Wu Y, Wang J, Wang X, Wu X, Shen W, Zhu J. Genetics Responses to Hypoxia and Reoxygenation Stress in Larimichthys crocea Revealed via Transcriptome Analysis and Weighted Gene Co-Expression Network. Animals (Basel) 2021; 11:ani11113021. [PMID: 34827754 PMCID: PMC8614329 DOI: 10.3390/ani11113021] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2021] [Revised: 09/26/2021] [Accepted: 09/29/2021] [Indexed: 02/07/2023] Open
Abstract
Simple Summary Hypoxia, which occurs frequently in aquaculture, can cause serious harm to all aspects of the growth, reproduction and metabolism of cultured fish. Due to the intolerance of Larimichthys crocea to hypoxia, Larimichthys crocea often floats head or even dies under hypoxic environment. However, the molecular mechanism of hypoxia tolerance in Larimichthys crocea has not been fully described. Therefore, the aim of this study was to explore the hub regulatory genes under hypoxic stress environment by transcriptome analysis of three key tissues (liver, blood and gill) in Larimichthys crocea. We identified a number of important genes that exercise different regulatory functions. Overall, this study will provide important clues to the molecular mechanisms of hypoxia tolerance in Larimichthys crocea. Abstract The large yellow croaker (Larimichthys crocea) is an important marine economic fish in China; however, its intolerance to hypoxia causes widespread mortality. To understand the molecular mechanisms underlying hypoxia tolerance in L. crocea, the transcriptome gene expression profiling of three different tissues (blood, gills, and liver) of L. crocea exposed to hypoxia and reoxygenation stress were performed. In parallel, the gene relationships were investigated based on weighted gene co-expression network analysis (WGCNA). Accordingly, the Gene Ontology and Kyoto Encyclopedia of Genes and Genomes enrichment analysis showed that several pathways (e.g., energy metabolism, signal transduction, oxygen transport, and osmotic regulation) may be involved in the response of L. crocea to hypoxia and reoxygenation stress. In addition, also, four key modules (darkorange, magenta, saddlebrown, and darkolivegreen) that were highly relevant to the samples were identified by WGCNA. Furthermore, some hub genes within the association module, including RPS16, EDRF1, KCNK5, SNAT2, PFKL, GSK-3β, and PIK3CD, were found. This is the first study to report the co-expression patterns of a gene network after hypoxia stress in marine fish. The results provide new clues for further research on the molecular mechanisms underlying hypoxia tolerance in L. crocea.
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Affiliation(s)
- Yibo Zhang
- Key Laboratory of Applied Marine Biotechnology of Ministry of Education, College of Marine Sciences, Ningbo University, 169 South Qixing Road, Ningbo 315832, China; (Y.Z.); (J.D.); (C.L.); (S.L.); (X.G.); (Y.W.); (J.W.)
- State Key Laboratory of Large Yellow Croaker Breeding, Ningbo Academy of Oceanology and Fishery, Juxian Road, Ningbo 315103, China; (X.W.); (X.W.)
| | - Jie Ding
- Key Laboratory of Applied Marine Biotechnology of Ministry of Education, College of Marine Sciences, Ningbo University, 169 South Qixing Road, Ningbo 315832, China; (Y.Z.); (J.D.); (C.L.); (S.L.); (X.G.); (Y.W.); (J.W.)
- State Key Laboratory of Large Yellow Croaker Breeding, Ningbo Academy of Oceanology and Fishery, Juxian Road, Ningbo 315103, China; (X.W.); (X.W.)
| | - Cheng Liu
- Key Laboratory of Applied Marine Biotechnology of Ministry of Education, College of Marine Sciences, Ningbo University, 169 South Qixing Road, Ningbo 315832, China; (Y.Z.); (J.D.); (C.L.); (S.L.); (X.G.); (Y.W.); (J.W.)
- State Key Laboratory of Large Yellow Croaker Breeding, Ningbo Academy of Oceanology and Fishery, Juxian Road, Ningbo 315103, China; (X.W.); (X.W.)
| | - Shengyu Luo
- Key Laboratory of Applied Marine Biotechnology of Ministry of Education, College of Marine Sciences, Ningbo University, 169 South Qixing Road, Ningbo 315832, China; (Y.Z.); (J.D.); (C.L.); (S.L.); (X.G.); (Y.W.); (J.W.)
| | - Xinming Gao
- Key Laboratory of Applied Marine Biotechnology of Ministry of Education, College of Marine Sciences, Ningbo University, 169 South Qixing Road, Ningbo 315832, China; (Y.Z.); (J.D.); (C.L.); (S.L.); (X.G.); (Y.W.); (J.W.)
| | - Yuanjie Wu
- Key Laboratory of Applied Marine Biotechnology of Ministry of Education, College of Marine Sciences, Ningbo University, 169 South Qixing Road, Ningbo 315832, China; (Y.Z.); (J.D.); (C.L.); (S.L.); (X.G.); (Y.W.); (J.W.)
| | - Jingqian Wang
- Key Laboratory of Applied Marine Biotechnology of Ministry of Education, College of Marine Sciences, Ningbo University, 169 South Qixing Road, Ningbo 315832, China; (Y.Z.); (J.D.); (C.L.); (S.L.); (X.G.); (Y.W.); (J.W.)
| | - Xuelei Wang
- State Key Laboratory of Large Yellow Croaker Breeding, Ningbo Academy of Oceanology and Fishery, Juxian Road, Ningbo 315103, China; (X.W.); (X.W.)
| | - Xiongfei Wu
- State Key Laboratory of Large Yellow Croaker Breeding, Ningbo Academy of Oceanology and Fishery, Juxian Road, Ningbo 315103, China; (X.W.); (X.W.)
| | - Weiliang Shen
- State Key Laboratory of Large Yellow Croaker Breeding, Ningbo Academy of Oceanology and Fishery, Juxian Road, Ningbo 315103, China; (X.W.); (X.W.)
- Correspondence: (W.S.); (J.Z.); Tel.: +86-153-8137-7660 (W.S.); +86-139-5784-1679 (J.Z.)
| | - Junquan Zhu
- Key Laboratory of Applied Marine Biotechnology of Ministry of Education, College of Marine Sciences, Ningbo University, 169 South Qixing Road, Ningbo 315832, China; (Y.Z.); (J.D.); (C.L.); (S.L.); (X.G.); (Y.W.); (J.W.)
- Correspondence: (W.S.); (J.Z.); Tel.: +86-153-8137-7660 (W.S.); +86-139-5784-1679 (J.Z.)
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