1
|
Seiler T, Lennartz A, Klein K, Hommel K, Figueroa Bietti A, Hadrovic I, Kollenda S, Sager J, Beuck C, Chlosta E, Bayer P, Juul-Madsen K, Vorup-Jensen T, Schrader T, Epple M, Knauer SK, Hartmann L. Potentiating Tweezer Affinity to a Protein Interface with Sequence-Defined Macromolecules on Nanoparticles. Biomacromolecules 2023; 24:3666-3679. [PMID: 37507377 DOI: 10.1021/acs.biomac.3c00393] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/30/2023]
Abstract
Survivin, a well-known member of the inhibitor of apoptosis protein family, is upregulated in many cancer cells, which is associated with resistance to chemotherapy. To circumvent this, inhibitors are currently being developed to interfere with the nuclear export of survivin by targeting its protein-protein interaction (PPI) with the export receptor CRM1. Here, we combine for the first time a supramolecular tweezer motif, sequence-defined macromolecular scaffolds, and ultrasmall Au nanoparticles (us-AuNPs) to tailor a high avidity inhibitor targeting the survivin-CRM1 interaction. A series of biophysical and biochemical experiments, including surface plasmon resonance measurements and their multivalent evaluation by EVILFIT, reveal that for divalent macromolecular constructs with increasing linker distance, the longest linkers show superior affinity, slower dissociation, as well as more efficient PPI inhibition. As a drawback, these macromolecular tweezer conjugates do not enter cells, a critical feature for potential applications. The problem is solved by immobilizing the tweezer conjugates onto us-AuNPs, which enables efficient transport into HeLa cells. On the nanoparticles, the tweezer valency rises from 2 to 16 and produces a 100-fold avidity increase. The hierarchical combination of different scaffolds and controlled multivalent presentation of supramolecular binders was the key to the development of highly efficient survivin-CRM1 competitors. This concept may also be useful for other PPIs.
Collapse
Affiliation(s)
- Theresa Seiler
- Department for Organic Chemistry and Macromolecular Chemistry, Heinrich Heine University Duesseldorf, Universitaetsstraße 1, Duesseldorf 40225, Germany
| | - Annika Lennartz
- Department for Molecular Biology II, Center of Medical Biotechnology (ZMB), University Duisburg-Essen, Universitaetsstrasse 5, Essen 45117, Germany
| | - Kai Klein
- Inorganic Chemistry and Centre for Nanointegration Duisburg-Essen (CENIDE), University of Duisburg-Essen, Universitaetsstrasse 5-7, Essen 45117, Germany
| | - Katrin Hommel
- Department for Molecular Biology II, Center of Medical Biotechnology (ZMB), University Duisburg-Essen, Universitaetsstrasse 5, Essen 45117, Germany
| | - Antonio Figueroa Bietti
- Institute of Organic Chemistry I, Faculty of Chemistry, University of Duisburg-Essen, Universitätsstrasse 7, 45141 Essen, Germany
| | - Inesa Hadrovic
- Institute of Organic Chemistry I, Faculty of Chemistry, University of Duisburg-Essen, Universitätsstrasse 7, 45141 Essen, Germany
| | - Sebastian Kollenda
- Inorganic Chemistry and Centre for Nanointegration Duisburg-Essen (CENIDE), University of Duisburg-Essen, Universitaetsstrasse 5-7, Essen 45117, Germany
| | - Jonas Sager
- Inorganic Chemistry and Centre for Nanointegration Duisburg-Essen (CENIDE), University of Duisburg-Essen, Universitaetsstrasse 5-7, Essen 45117, Germany
| | - Christine Beuck
- Structural and Medicinal Biochemistry, Center of Medical Biotechnology (ZMB), University of Duisburg-Essen, Universitätsstrasse 5, 45141 Essen, Germany
| | - Emilia Chlosta
- Department for Molecular Biology II, Center of Medical Biotechnology (ZMB), University Duisburg-Essen, Universitaetsstrasse 5, Essen 45117, Germany
| | - Peter Bayer
- Structural and Medicinal Biochemistry, Center of Medical Biotechnology (ZMB), University of Duisburg-Essen, Universitätsstrasse 5, 45141 Essen, Germany
| | - Kristian Juul-Madsen
- Department of Biomedicine, Aarhus University, Skou Building (1115), Høegh-Guldbergs Gade 10, DK-8000 Aarhus C, Denmark
- Max-Delbrueck-Center for Molecular Medicine, 13125 Berlin, Germany
| | - Thomas Vorup-Jensen
- Department of Biomedicine, Aarhus University, Skou Building (1115), Høegh-Guldbergs Gade 10, DK-8000 Aarhus C, Denmark
| | - Thomas Schrader
- Institute of Organic Chemistry I, Faculty of Chemistry, University of Duisburg-Essen, Universitätsstrasse 7, 45141 Essen, Germany
| | - Matthias Epple
- Inorganic Chemistry and Centre for Nanointegration Duisburg-Essen (CENIDE), University of Duisburg-Essen, Universitaetsstrasse 5-7, Essen 45117, Germany
| | - Shirley K Knauer
- Department for Molecular Biology II, Center of Medical Biotechnology (ZMB), University Duisburg-Essen, Universitaetsstrasse 5, Essen 45117, Germany
| | - Laura Hartmann
- Department for Organic Chemistry and Macromolecular Chemistry, Heinrich Heine University Duesseldorf, Universitaetsstraße 1, Duesseldorf 40225, Germany
| |
Collapse
|
2
|
Hering A, Braga Emidio N, Muttenthaler M. Expanding the versatility and scope of the oxime ligation: rapid bioconjugation to disulfide-rich peptides. Chem Commun (Camb) 2022; 58:9100-9103. [PMID: 35880482 PMCID: PMC9367247 DOI: 10.1039/d2cc03752a] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2022] [Accepted: 07/14/2022] [Indexed: 11/21/2022]
Abstract
The oxime ligation is a valuable bioorthogonal conjugation reaction but with limited compatibility with disulfide-rich peptides/proteins and time-sensitive applications. Here we overcome these limitations by introducing a strategy that supports regiospecific control, oxidative folding, production of stable aminooxy-precursors for on-demand modification, and complete ligation within 5 min.
Collapse
Affiliation(s)
- Anke Hering
- Institute for Molecular Bioscience, The University of Queensland, Brisbane, 4072, Australia.
| | - Nayara Braga Emidio
- Institute for Molecular Bioscience, The University of Queensland, Brisbane, 4072, Australia.
| | - Markus Muttenthaler
- Institute for Molecular Bioscience, The University of Queensland, Brisbane, 4072, Australia.
- Institute of Biological Chemistry, University of Vienna, Währingerstraße 38, Vienna, 1090, Austria.
| |
Collapse
|
3
|
Rezhdo A, Islam M, Huang M, Van Deventer JA. Future prospects for noncanonical amino acids in biological therapeutics. Curr Opin Biotechnol 2019; 60:168-178. [PMID: 30974337 DOI: 10.1016/j.copbio.2019.02.020] [Citation(s) in RCA: 51] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2019] [Accepted: 02/22/2019] [Indexed: 12/12/2022]
Abstract
There is growing evidence that noncanonical amino acids (ncAAs) can be utilized in the creation of biological therapeutics ranging from protein conjugates to cell-based therapies. However, when does genetically encoding ncAAs yield biologics with unique properties compared to other approaches? In this review, we attempt to answer this question in the broader context of therapeutic development, emphasizing advances within the past two years. In several areas, ncAAs add valuable routes to therapeutically relevant entities, but application-specific needs ultimately determine whether ncAA-mediated or alternative solutions are preferred. Looking forward, using ncAAs to perform 'protein medicinal chemistry,' in which atomic-level changes to proteins dramatically enhance therapeutic properties, is a promising emerging area. Further upgrades to the performance of ncAA incorporation technologies will be essential to realizing the full potential of ncAAs in biological therapeutics.
Collapse
Affiliation(s)
- Arlinda Rezhdo
- Chemical and Biological Engineering Department, Tufts University, Medford, MA 02155, United States
| | - Mariha Islam
- Chemical and Biological Engineering Department, Tufts University, Medford, MA 02155, United States
| | - Manjie Huang
- Chemical and Biological Engineering Department, Tufts University, Medford, MA 02155, United States
| | - James A Van Deventer
- Chemical and Biological Engineering Department, Tufts University, Medford, MA 02155, United States; Biomedical Engineering Department, Tufts University, Medford, MA 02155, United States.
| |
Collapse
|
4
|
Nandi S, Reinsch H, Banesh S, Stock N, Trivedi V, Biswas S. Rapid and highly sensitive detection of extracellular and intracellular H2S by an azide-functionalized Al(iii)-based metal–organic framework. Dalton Trans 2017; 46:12856-12864. [DOI: 10.1039/c7dt02293j] [Citation(s) in RCA: 49] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Fast and highly sensitive sensing of both extracellular and intracellular H2S by an Al(iii)-based CAU-10-N3MOF is presented.
Collapse
Affiliation(s)
- Soutick Nandi
- Department of Chemistry
- Indian Institute of Technology Guwahati
- 781039 Assam
- India
| | - Helge Reinsch
- Institut für Anorganische Chemie
- Christian-Albrechts-Universität
- 24118 Kiel
- Germany
| | - Sooram Banesh
- Malaria Research Group
- Department of Biosciences and Bioengineering
- Indian Institute of Technology Guwahati
- India
| | - Norbert Stock
- Institut für Anorganische Chemie
- Christian-Albrechts-Universität
- 24118 Kiel
- Germany
| | - Vishal Trivedi
- Malaria Research Group
- Department of Biosciences and Bioengineering
- Indian Institute of Technology Guwahati
- India
| | - Shyam Biswas
- Department of Chemistry
- Indian Institute of Technology Guwahati
- 781039 Assam
- India
| |
Collapse
|
5
|
Li S, Cai H, He J, Chen H, Lam S, Cai T, Zhu Z, Bark SJ, Cai C. Extent of the Oxidative Side Reactions to Peptides and Proteins During the CuAAC Reaction. Bioconjug Chem 2016; 27:2315-2322. [DOI: 10.1021/acs.bioconjchem.6b00267] [Citation(s) in RCA: 59] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Affiliation(s)
- Siheng Li
- Department of Chemistry and ‡Department of Biology and Biochemistry, University of Houston, 4800 Calhoun Road, Houston, Texas 77204, United States
| | - Honghao Cai
- Department of Chemistry and ‡Department of Biology and Biochemistry, University of Houston, 4800 Calhoun Road, Houston, Texas 77204, United States
| | - Jilin He
- Department of Chemistry and ‡Department of Biology and Biochemistry, University of Houston, 4800 Calhoun Road, Houston, Texas 77204, United States
| | - Haoqing Chen
- Department of Chemistry and ‡Department of Biology and Biochemistry, University of Houston, 4800 Calhoun Road, Houston, Texas 77204, United States
| | - Srujana Lam
- Department of Chemistry and ‡Department of Biology and Biochemistry, University of Houston, 4800 Calhoun Road, Houston, Texas 77204, United States
| | - Tao Cai
- Department of Chemistry and ‡Department of Biology and Biochemistry, University of Houston, 4800 Calhoun Road, Houston, Texas 77204, United States
| | - Zhiling Zhu
- Department of Chemistry and ‡Department of Biology and Biochemistry, University of Houston, 4800 Calhoun Road, Houston, Texas 77204, United States
| | - Steven J. Bark
- Department of Chemistry and ‡Department of Biology and Biochemistry, University of Houston, 4800 Calhoun Road, Houston, Texas 77204, United States
| | - Chengzhi Cai
- Department of Chemistry and ‡Department of Biology and Biochemistry, University of Houston, 4800 Calhoun Road, Houston, Texas 77204, United States
| |
Collapse
|
6
|
Abel GR, Calabrese ZA, Ayco J, Hein JE, Ye T. Measuring and Suppressing the Oxidative Damage to DNA During Cu(I)-Catalyzed Azide-Alkyne Cycloaddition. Bioconjug Chem 2016; 27:698-704. [PMID: 26829457 DOI: 10.1021/acs.bioconjchem.5b00665] [Citation(s) in RCA: 50] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
We have used the quantitative polymerase chain reaction (qPCR) to measure the extent of oxidative DNA damage under varying reaction conditions used for copper(I)-catalyzed click chemistry. We systematically studied how the damage depends on a number of key reaction parameters, including the amounts of copper, ascorbate, and ligand used, and found that the damage is significant under nearly all conditions tested, including those commonly used for bioconjugation. Furthermore, we discovered that the addition of dimethyl sulfoxide, a known radical scavenger, into the aqueous mixture dramatically suppresses DNA damage during the reaction. We also measured the efficiency of cross-linking two short synthetic oligonucleotides via click chemistry, and found that the reaction could proceed reasonably efficiently even with DMSO present. This approach for screening both DNA damage and reactivity under a range of reaction conditions will be valuable for improving the biocompatibility of click chemistry, and should help to extend this powerful synthetic tool for both in vitro and in vivo applications.
Collapse
Affiliation(s)
- Gary R Abel
- Chemistry & Chemical Biology, School of Natural Sciences, University of California, Merced , 5200 North Lake Road, Merced, California 95343, United States
| | - Zachary A Calabrese
- Chemistry & Chemical Biology, School of Natural Sciences, University of California, Merced , 5200 North Lake Road, Merced, California 95343, United States
| | - Jeffrey Ayco
- Chemistry & Chemical Biology, School of Natural Sciences, University of California, Merced , 5200 North Lake Road, Merced, California 95343, United States
| | - Jason E Hein
- Chemistry & Chemical Biology, School of Natural Sciences, University of California, Merced , 5200 North Lake Road, Merced, California 95343, United States.,Department of Chemistry, UBC Faculty of Science, The University of British Columbia , 2036 Main Mall, Vancouver, British Columbia, Canada V6T 1Z1
| | - Tao Ye
- Chemistry & Chemical Biology, School of Natural Sciences, University of California, Merced , 5200 North Lake Road, Merced, California 95343, United States
| |
Collapse
|