Biodegradation of Volatile Chemicals in Soil: Separating Volatilization and Degradation in an Improved Test Setup (OECD 307)

Bioremediation experiments and dynamic model of petroleum hydrocarbon contaminated soil

Clarifying the occurrence and morphological characteristics of petroleum hydrocarbons (PHs) in soil can facilitate a comprehensive understanding of their migration and transformation patterns in soil/sediment. Additionally, by establishing the dynamic transformation process of each occurrence state, the ecological impact and environmental risk associated with PHs in soil/sediment can be assessed more precisely. The adsorption experiments and closed static incubation experiments was carried out to explore the PHs degradation and fraction distribution in aged contaminated soil under two remediation scenarios of natural attenuation (NA) and bioaugmentation (BA) by exogenous bacteria through a new sequential extraction method based on Tenax-TA, Hydroxypropyl-β-cyclodextrin and Rhamnolipid (HPCD/RL), accelerated solvent extractor (ASE) unit and alkaline hydrolysis extraction. The adsorption experiment results illustrated that bioaugmentation could promote the desorption of PHs in the adsorption phase, and the soil-water partition coefficient Kd decreased from 0.153 L/g to 0.092 L/g. The incubation experiment results showed that compared with natural attenuation, bioaugmentation could improve the utilization of PHs in aged soil and promote the generation of non-extractable hydrocarbons. On the 90th day of the experiment, the concentrations of weakly adsorbed hydrocarbons in the natural attenuation and bioaugmentation experimental groups decreased by 46.44% and 87.07%, respectively, while the concentrations of strongly adsorbed hydrocarbons and non-extractable hydrocarbons increased by 77.93%, 182.14%, and 80.91%, and 501.19%, respectively, compared their initial values. We developed a novel dynamic model and inverted the kinetic parameters of the model by the parameter scanning function and the Markov Chain Monte Carlo (MCMC) method based on the Bayesian approach in COMSOL Multiphysics® finite element software combined with experimental data. There was a good linear relationship between experimental interpolation data and model prediction data. The R2 for the concentrations of weakly adsorbed hydrocarbons ranged from 0.9953 to 0.9974, for strongly adsorbed hydrocarbons from 0.9063 to 0.9756, and for non-extractable hydrocarbons from 0.9931 to 0.9982. These extremely high correlation coefficients demonstrate the high accuracy of the parameters calculated using the Bayesian inversion method.

Predicting Hydrocarbon Primary Biodegradation in Soil and Sediment Systems Using System Parameterization and Machine Learning

Technical complexity associated with biodegradation testing, particularly for substances of unknown or variable composition, complex reaction products, or biological materials (UVCB), necessitates the advancement of non-testing methods such as quantitative structure-property relationships (QSPRs). Models for describing the biodegradation of petroleum hydrocarbons (HCs) have been previously developed. A critical limitation of available models is their inability to capture the variability in biodegradation rates associated with variable test systems and environmental conditions. Recently, the Hydrocarbon Biodegradation System Integrated Model (HC-BioSIM) was developed to characterize the biodegradation of HCs in aquatic systems with the inclusion of key test system variables. The present study further expands the HC-BioSIM methodology to soil and sediment systems using a database of 2195 half-life (i.e., degradation time [DT]50) entries for HCs in soil and sediment. Relevance and reliability criteria were defined based on similarity to standard testing guidelines for biodegradation testing and applied to all entries in the database. The HC-BioSIM soil and sediment models significantly outperformed the existing biodegradation HC half-life (BioHCWin) and virtual evaluation of chemical properties and toxicities (VEGA) quantitative Mario Negri Institute for Pharmacological Research (IRFMN) models in soil and sediment. Average errors in predicted DT50s were reduced by up to 6.3- and 8.7-fold for soil and sediment, respectively. No significant bias as a function of HC class, carbon number, or test system parameters was observed. Model diagnostics demonstrated low variability in performance and high consistency of parameter usage/importance and rule structure, supporting the generalizability and stability of the models for application to external data sets. The HC-BioSIM provides improved accuracy of Persistence categorization, with correct classification rates of 83.9%, and 90.6% for soil and sediment, respectively, demonstrating a significant improvement over the existing BioHCWin (70.7% and 58.6%) and VEGA (59.5% and 18.5%) models. Environ Toxicol Chem 2024;43:1352-1363. © 2024 Concawe. Environmental Toxicology and Chemistry published by Wiley Periodicals LLC on behalf of SETAC.

Impact of different sterilisation techniques on sorption and NER formation of test chemicals in soil

Standard OECD tests are used to generate data on biodegradation (OECD 307) and sorption (OECD 106) of test chemicals in soil. In such tests, data on abiotic degradation using sterile samples are utilised to investigate any losses due to abiotic processes. The data from sterile samples are also used to interpret results and findings of non-sterile samples, especially in the context of sorption and non-extractable residue (NER) formation. However, to ensure the comparability of the data obtained from sterile and non-sterile experiments, effects of sterilisation on the soil matrix should be minimal. The objective of this study was to investigate the efficiencies of different sterilisation techniques and the impact of the sterilisation on sorption and NER formation in soil. In this study, experiments in accordance with OECD 307 and OECD 106 guidelines were performed with two soils covering wide range of soil characteristics and treated with the three sterilisation techniques autoclaving, gamma(γ)-radiation and adding 1% (w/w) sodium azide. As a test item, 14C-labelled phenanthrene and bromoxynil was used for OECD 307 test, whereas non-labelled phenanthrene and atrazine was used for OECD 106. The sterilisation efficiencies were investigated using traditional viable plate count and molecular approaches (RNA extraction method). The results suggest that none of the tested techniques resulted in completely sterilised soil with autoclaving being the most efficient technique. Adding sodium azide led to most inefficient sterilisation and a significant increase (0.56 units) in soil pH. OECD 307 results showed differences in NER formation of the test chemicals, especially for soil poisoning and γ-radiation, which could be due to inefficient sterilisation and/or change in soil physico-chemical properties. OECD 106 results suggest that none of the sterilisation techniques considerably affected sorption behaviour of the test chemicals. Based on our results, we recommend autoclaving as most suitable sterilisation technique.

Scientific concepts and methods for moving persistence assessments into the 21st century

The evaluation of a chemical substance's persistence is key to understanding its environmental fate, exposure concentration, and, ultimately, environmental risk. Traditional biodegradation test methods were developed many years ago for soluble, nonvolatile, single-constituent test substances, which do not represent the wide range of manufactured chemical substances. In addition, the Organisation for Economic Co-operation and Development (OECD) screening and simulation test methods do not fully reflect the environmental conditions into which substances are released and, therefore, estimates of chemical degradation half-lives can be very uncertain and may misrepresent real environmental processes. In this paper, we address the challenges and limitations facing current test methods and the scientific advances that are helping to both understand and provide solutions to them. Some of these advancements include the following: (1) robust methods that provide a deeper understanding of microbial composition, diversity, and abundance to ensure consistency and/or interpret variability between tests; (2) benchmarking tools and reference substances that aid in persistence evaluations through comparison against substances with well-quantified degradation profiles; (3) analytical methods that allow quantification for parent and metabolites at environmentally relevant concentrations, and inform on test substance bioavailability, biochemical pathways, rates of primary versus overall degradation, and rates of metabolite formation and decay; (4) modeling tools that predict the likelihood of microbial biotransformation, as well as biochemical pathways; and (5) modeling approaches that allow for derivation of more generally applicable biotransformation rate constants, by accounting for physical and/or chemical processes and test system design when evaluating test data. We also identify that, while such advancements could improve the certainty and accuracy of persistence assessments, the mechanisms and processes by which they are translated into regulatory practice and development of new OECD test guidelines need improving and accelerating. Where uncertainty remains, holistic weight of evidence approaches may be required to accurately assess the persistence of chemicals. Integr Environ Assess Manag 2022;18:1454-1487. © 2022 The Authors. Integrated Environmental Assessment and Management published by Wiley Periodicals LLC on behalf of Society of Environmental Toxicology & Chemistry (SETAC).

Moving persistence assessments into the 21st century: A role for weight-of-evidence and overall persistence

Assessing the persistence of chemicals in the environment is a key element in existing regulatory frameworks to protect human health and ecosystems. Persistence in the environment depends on many fate processes, including abiotic and biotic transformations and physical partitioning, which depend on substances' physicochemical properties and environmental conditions. A main challenge in persistence assessment is that existing frameworks rely on simplistic and reductionist evaluation schemes that may lead substances to be falsely assessed as persistent or the other way around-to be falsely assessed as nonpersistent. Those evaluation schemes typically assess persistence against degradation half-lives determined in single-compartment simulation tests or against degradation levels measured in stringent screening tests. Most of the available test methods, however, do not apply to all types of substances, especially substances that are poorly soluble, complex in composition, highly sorptive, or volatile. In addition, the currently applied half-life criteria are derived mainly from a few legacy persistent organic pollutants, which do not represent the large diversity of substances entering the environment. Persistence assessment would undoubtedly benefit from the development of more flexible and holistic evaluation schemes including new concepts and methods. A weight-of-evidence (WoE) approach incorporating multiple influencing factors is needed to account for chemical fate and transformation in the whole environment so as to assess overall persistence. The present paper's aim is to begin to develop an integrated assessment framework that combines multimedia approaches to organize and interpret data using a clear WoE approach to allow for a more consistent, transparent, and thorough assessment of persistence. Integr Environ Assess Manag 2022;18:868-887. © 2021 ExxonMobil Biomedical Sciences, Inc. Integrated Environmental Assessment and Management published by Wiley Periodicals LLC on behalf of Society of Environmental Toxicology & Chemistry (SETAC).

Linking biodegradation kinetics, microbial composition and test temperature - Testing 40 petroleum hydrocarbons using inocula collected in winter and summer

Many factors affect the biodegradation kinetics of chemicals in test systems and the environment. Empirical knowledge is needed on how much test temperature, inoculum, test substances and co-substrates influence the biodegradation kinetics and microbial composition in the test. Water was sampled from the Gudenaa river in winter (2.7 °C) and summer (17 °C) (microbial inoculum) and combined with an aqueous stock solution of >40 petroleum hydrocarbons prepared by passive dosing. This resulted in low-concentration test systems that were incubated for 30 days at 2.7, 12 and 20 °C. Primary biodegradation kinetics, based on substrate depletion relative to abiotic controls, were determined with automated Solid Phase Microextraction coupled to GC/MS. Biodegradation kinetics were remarkably similar for summer and winter inocula when tested at the same temperature, except when cooling summer inoculum to 2.7 °C which delayed degradation relative to winter inoculum. Amplicon sequencing was applied to determine shifts in the microbial composition between season and during incubations: (1) the microbial composition of summer and winter inocula were remarkably similar, (2) the incubation and the incubation temperature had both a clear impact on the microbial composition and (3) the effect of adding >40 petroleum hydrocarbons at low test concentrations was limited but resulted in some proliferation of the known petroleum hydrocarbon degraders Nevskia and Sulfuritalea. Overall, biodegradation kinetics and its temperature dependency were very similar for winter and summer inoculum, whereas the microbial composition was more affected by incubation and test temperature compared to the addition of test chemicals at low concentrations.

Improving our understanding of the environmental persistence of chemicals

Significant progress has been made in the scientific understanding of factors that influence the outcome of biodegradation tests used to assess the persistence (P) of chemicals. This needs to be evaluated to assess whether recently acquired knowledge could enhance existing regulations and environmental risk assessments. Biodegradation tests have limitations, which are accentuated for "difficult-to-test" substances, and failure to recognize these can potentially lead to inappropriate conclusions regarding a chemical's environmental persistence. Many of these limitations have been previously recognized and discussed in a series of ECETOC reports and workshops. These were subsequently used to develop a series of research projects designed to address key issues and, where possible, propose methods to mitigate the limitations of current assessments. Here, we report on the output of a Cefic LRI-Concawe Workshop held in Helsinki on September 27, 2018. The objectives of this workshop were to disseminate key findings from recent projects and assess how new scientific knowledge can potentially support and improve assessments under existing regulatory frameworks. The workshop provided a unique opportunity to initiate a process to reexamine the fundamentals of degradation and what current assessment methods can achieve by (1) providing an overview of the key elements and messages coming from recent research initiatives and (2) stimulating discussion regarding how these interrelate and how new findings can be developed to improve persistence assessments. Opportunities to try and improve understanding of factors affecting biodegradation assessments and better understanding of the persistence of chemicals (particularly UVCBs [substances of unknown or variable composition, complex reaction products, or biological materials]) were identified, and the workshop acted as a catalyst for further multistakeholder activities and engagements to take the persistence assessment of chemicals into the 21st century. Integr Environ Assess Manag 2021;17:1123-1135. © 2021 European Petroleum Refiners Association - Concawe Division. Integrated Environmental Assessment and Management published by Wiley Periodicals LLC on behalf of Society of Environmental Toxicology & Chemistry (SETAC).

Biodegradation testing of volatile hydrophobic chemicals in water-sediment systems - Experimental developments and challenges

Degradation data are crucial for the persistence assessment of chemicals and they are generated using standard OECD guidelines. The OECD 308 describes a simulation biodegradation test of chemicals in water-sediment systems. This guideline is not applicable for testing highly volatile chemicals and recommends a closed biometer test setup for testing slightly volatile chemicals. However, proper details on system geometries, construction and monitoring of aerobic conditions are not provided. The choice of system geometry and sediment:water ratio influences the partitioning of test chemicals between different compartments (water, sediment and headspace) and can therefore affect their degradation. The guideline recommends the addition of test chemical via aqueous solutions, which however is not possible for hydrophobic volatile chemicals due to their volatilization losses and low solubility. Thus, the use of a co-solvent is necessary for the application of such chemicals but its effects in a closed setup has not been studied. We recently developed an improved closed test setup for testing volatile chemicals in soil. The objective was to adapt this improved test setup to conduct OECD 308 tests using ¹⁴C labelled chemicals with different volatilities. Using the adapted test setup it was possible to obtain a complete mass balance even for n-decane and tetralin having the highest Henry's constants of the tested chemicals. However, the use of co-solvent affected the oxygen levels, which in turn affected microbial activity and likely also the degradation of test chemicals. Therefore, the adapted test setup needs further developments for the testing of volatile hydrophobic chemicals.