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Derbali I, Thissen R, Alcaraz C, Romanzin C, Zins EL. Study of the Reactivity of CH 3COOH +• and COOH + Ions with CH 3NH 2: Evidence of the Formation of New Peptide-like C(O)-N Bonds. J Phys Chem A 2021; 125:10006-10020. [PMID: 34761946 DOI: 10.1021/acs.jpca.1c06630] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Acetamide, a small organic compound containing a peptide bond, was observed in the interstellar medium, but reaction pathways leading to the formation of this prebiotic molecule remain uncertain. We investigated the possible formation of a peptide-like bond from the reaction between acetic acid (CH3-COOH) and methylamine (CH3-NH2) that were identified in the interstellar medium. From an experimental point of view, a quadrupole/octopole/quadrupole mass spectrometer was used in combination with synchrotron radiation as a tunable source of VUV photons for monitoring the reactivity of selected ions. Acetic acid was photoionized, and the reactivity of CH3COOH+• as well as COOH+ (produced from either acetic acid or formic acid) ions with neutral CH3NH2 was further studied. With no surprise, charge transfer, proton transfer, and concomitant dissociation processes were found to largely dominate the reactivity. However, a C(O)-N bond formation process between the two reactants was also evidenced, with a weak cross section reaction. From a theoretical point of view, results concerning reactivity and barrier heights were obtained using density functional theory, with the LC-ωPBE range-separated functional in combination with the 6-311++G(d,p) Pople basis set and are in perfect agreement with the experimental data.
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Affiliation(s)
- Imene Derbali
- De la Molécule aux Nano-Objets: Réactivité, Interactions Spectroscopies, MONARIS, Sorbonne Université, CNRS, 75005 Paris, France
| | - Roland Thissen
- Institut de Chimie Physique, UMR 8000, Université Paris-Saclay, CNRS, Bât. 350, 91405 Orsay, France.,SOLEIL Synchrotron, L'Orme des Merisiers, Saint-Aubin, BP 48, 91192 Gif-sur-Yvette, France
| | - Christian Alcaraz
- Institut de Chimie Physique, UMR 8000, Université Paris-Saclay, CNRS, Bât. 350, 91405 Orsay, France.,SOLEIL Synchrotron, L'Orme des Merisiers, Saint-Aubin, BP 48, 91192 Gif-sur-Yvette, France
| | - Claire Romanzin
- Institut de Chimie Physique, UMR 8000, Université Paris-Saclay, CNRS, Bât. 350, 91405 Orsay, France.,SOLEIL Synchrotron, L'Orme des Merisiers, Saint-Aubin, BP 48, 91192 Gif-sur-Yvette, France
| | - Emilie-Laure Zins
- De la Molécule aux Nano-Objets: Réactivité, Interactions Spectroscopies, MONARIS, Sorbonne Université, CNRS, 75005 Paris, France
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Sundelin D, Ascenzi D, Richardson V, Alcaraz C, Polášek M, Romanzin C, Thissen R, Tosi P, Žabka J, Geppert W. The reactivity of methanimine radical cation (H2CNH•+) and its isomer aminomethylene (HCNH2•+) with C2H4. Chem Phys Lett 2021. [DOI: 10.1016/j.cplett.2021.138677] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Cerqueira HBA, Santos JC, Fantuzzi F, Ribeiro FDA, Rocco MLM, Oliveira RR, Rocha AB. Structure, Stability, and Spectroscopic Properties of Small Acetonitrile Cation Clusters. J Phys Chem A 2020; 124:6845-6855. [PMID: 32702984 DOI: 10.1021/acs.jpca.0c03529] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Ionization and fragmentation pathways induced by ionizing agents are key to understanding the formation of complex molecules in astrophysical environments. Acetonitrile (CH3CN), the simplest organic nitrile, is an important molecule present in the interstellar medium. In this work, DFT and MP2 calculations were performed in order to obtain the low energy structures of the most relevant cations formed from electron-stimulated ion desorption of CH3CN ices. Selected reaction pathways and spectroscopic properties were also calculated. Our results indicate that the most stable acetonitrile cation structure is CH2CNH+ and that hydrogenation can occur successively without isomerization steps until its complete saturation. Moreover, the stability of distinct cluster families formed from the interaction of acetonitrile with small fragments, such as CHn+, C2Hn+, and CHnCNH+, is discussed in terms of their respective binding energies. Some of these molecular clusters are stabilized by hydrogen bonds, leading to species whose infrared features are characterized by a strong redshift of the N-H stretching mode. Finally, the rotational spectra of CH3CN and protonated acetonitrile, CH3CNH+, were simulated using distinct computational protocols based on DFT, MP2, and CCSD(T) considering centrifugal distortion, vibrational-rotational coupling, and vibrational anharmonicity corrections. By adopting an empirical scaling procedure for calculating spectroscopic parameters, we were able to estimate the rotational frequencies of CH3CNH+ with an expected average error below 1 MHz for J values up to 10.
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Affiliation(s)
- Henrique B A Cerqueira
- Instituto de Quı́mica, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ 21941-909, Brazil
| | - Julia C Santos
- Instituto de Quı́mica, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ 21941-909, Brazil
| | - Felipe Fantuzzi
- Institut für Anorganische Chemie, Julius-Maximilians-Universität Würzburg, Am Hubland, 97074 Würzburg, Germany.,Institut für Physikalische und Theoretische Chemie, Julius-Maximilians-Universität Würzburg, Emil-Fischer-Straße 42, 97074 Würzburg, Germany
| | | | - Maria Luiza M Rocco
- Instituto de Quı́mica, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ 21941-909, Brazil
| | - Ricardo R Oliveira
- Instituto de Quı́mica, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ 21941-909, Brazil
| | - Alexandre B Rocha
- Instituto de Quı́mica, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ 21941-909, Brazil
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Reusch E, Holzmeier F, Gerlach M, Fischer I, Hemberger P. Decomposition of Picolyl Radicals at High Temperature: A Mass Selective Threshold Photoelectron Spectroscopy Study. Chemistry 2019; 25:16652-16659. [PMID: 31637775 PMCID: PMC6972682 DOI: 10.1002/chem.201903937] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2019] [Revised: 10/16/2019] [Indexed: 01/24/2023]
Abstract
The reaction products of the picolyl radicals at high temperature were characterized by mass-selective threshold photoelectron spectroscopy in the gas phase. Aminomethylpyridines were pyrolyzed to initially produce picolyl radicals (m/z=92). At higher temperatures further thermal reaction products are generated in the pyrolysis reactor. All compounds were identified by mass-selected threshold photoelectron spectroscopy and several hitherto unexplored reactive molecules were characterized. The mechanism for several dissociation pathways was outlined in computations. The spectrum of m/z=91, resulting from hydrogen loss of picolyl, shows four isomers, two ethynyl pyrroles with adiabatic ionization energies (IEad ) of 7.99 eV (2-ethynyl-1H-pyrrole) and 8.12 eV (3-ethynyl-1H-pyrrole), and two cyclopentadiene carbonitriles with IE's of 9.14 eV (cyclopenta-1,3-diene-1-carbonitrile) and 9.25 eV (cyclopenta-1,4-diene-1-carbonitrile). A second consecutive hydrogen loss forms the cyanocyclopentadienyl radical with IE's of 9.07 eV (T0 ) and 9.21 eV (S1 ). This compound dissociates further to acetylene and the cyanopropynyl radical (IE=9.35 eV). Furthermore, the cyclopentadienyl radical, penta-1,3-diyne, cyclopentadiene and propargyl were identified in the spectra. Computations indicate that dissociation of picolyl proceeds initially via a resonance-stabilized seven-membered ring.
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Affiliation(s)
- Engelbert Reusch
- Institute of Physical and Theoretical ChemistryUniversity of WürzburgAm Hubland Süd97074WürzburgGermany
| | - Fabian Holzmeier
- Dipartimento di FisicaPolitecnico di MilanoPiazza Leonardo da Vinci 3220133MilanoItaly
| | - Marius Gerlach
- Institute of Physical and Theoretical ChemistryUniversity of WürzburgAm Hubland Süd97074WürzburgGermany
| | - Ingo Fischer
- Institute of Physical and Theoretical ChemistryUniversity of WürzburgAm Hubland Süd97074WürzburgGermany
| | - Patrick Hemberger
- Laboratory for Femtochemistry and Synchrotron RadiationPaul Scherrer Institut (PSI)5232VilligenSwitzerland
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Endo T, Matsuda Y, Moriyama S, Fujii A. Infrared Spectroscopic Study on Trimethyl Amine Radical Cation: Correlation between Proton-Donating Ability and Structural Deformation. J Phys Chem A 2019; 123:5945-5950. [DOI: 10.1021/acs.jpca.9b01261] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Tomoya Endo
- Department of Chemistry, Graduate School of Science, Tohoku University, 6-3, Aramaki-Aza-Aoba, Aoba-ku, Sendai 980-8578, Miyagi, Japan
| | - Yoshiyuki Matsuda
- Department of Chemistry, Graduate School of Science, Tohoku University, 6-3, Aramaki-Aza-Aoba, Aoba-ku, Sendai 980-8578, Miyagi, Japan
| | - Shohei Moriyama
- Department of Chemistry, Graduate School of Science, Tohoku University, 6-3, Aramaki-Aza-Aoba, Aoba-ku, Sendai 980-8578, Miyagi, Japan
| | - Asuka Fujii
- Department of Chemistry, Graduate School of Science, Tohoku University, 6-3, Aramaki-Aza-Aoba, Aoba-ku, Sendai 980-8578, Miyagi, Japan
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Kameneva SV, Volosatova AD, Feldman VI. Radiation-induced transformations of isolated CH3CN molecules in noble gas matrices. Radiat Phys Chem Oxf Engl 1993 2017. [DOI: 10.1016/j.radphyschem.2017.08.011] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Cernuto A, Lopes A, Romanzin C, Cunha de Miranda B, Ascenzi D, Tosi P, Tonachini G, Maranzana A, Polášek M, Žabka J, Alcaraz C. Effects of collision energy and vibrational excitation of CH 3+ cations on its reactivity with hydrocarbons: But-2-yne CH 3CCCH 3 as reagent partner. J Chem Phys 2017; 147:154302. [PMID: 29055295 DOI: 10.1063/1.4990514] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The methyl carbocation is ubiquitous in gaseous environments, such as planetary ionospheres, cometary comae, and the interstellar medium, as well as combustion systems and plasma setups for technological applications. Here we report on a joint experimental and theoretical study on the mechanism of the reaction CH3+ + CH3CCCH3 (but-2-yne, also known as dimethylacetylene), by combining guided ion beam mass spectrometry experiments with ab initio calculations of the potential energy hypersurface. Such a reaction is relevant in understanding the chemical evolution of Saturn's largest satellite, Titan. Two complementary setups have been used: in one case, methyl cations are generated via electron ionization, while in the other case, direct vacuum ultraviolet photoionization with synchrotron radiation of methyl radicals is used to study internal energy effects on the reactivity. Absolute reactive cross sections have been measured as a function of collision energy, and product branching ratios have been derived. The two most abundant products result from electron and hydride transfer, occurring via direct and barrierless mechanisms, while other channels are initiated by the electrophilic addition of the methyl cation to the triple bond of but-2-yne. Among the minor channels, special relevance is placed on the formation of C5H7+, stemming from H2 loss from the addition complex. This is the only observed condensation product with the formation of new C-C bonds, and it might represent a viable pathway for the synthesis of complex organic species in astronomical environments and laboratory plasmas.
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Affiliation(s)
- Andrea Cernuto
- Department of Physics, University of Trento, Via Sommarive 14, Trento I-38123, Italy
| | - Allan Lopes
- Laboratoire de Chimie Physique, Bât. 350, UMR 8000, CNRS-Univ. Paris-Sud 11 and Paris Saclay, Centre Universitaire Paris-Sud, 91405 Orsay Cedex, France
| | - Claire Romanzin
- Laboratoire de Chimie Physique, Bât. 350, UMR 8000, CNRS-Univ. Paris-Sud 11 and Paris Saclay, Centre Universitaire Paris-Sud, 91405 Orsay Cedex, France
| | | | - Daniela Ascenzi
- Department of Physics, University of Trento, Via Sommarive 14, Trento I-38123, Italy
| | - Paolo Tosi
- Department of Physics, University of Trento, Via Sommarive 14, Trento I-38123, Italy
| | - Glauco Tonachini
- Department of Chemistry, University of Torino, Via Pietro Giuria, 7, Torino I-10125, Italy
| | - Andrea Maranzana
- Department of Chemistry, University of Torino, Via Pietro Giuria, 7, Torino I-10125, Italy
| | - Miroslav Polášek
- J. Heyrovský Institute of Physical Chemistry of the Czech Academy of Sciences, Dolejškova 3, 182 23 Prague 8, Czech Republic
| | - Jan Žabka
- J. Heyrovský Institute of Physical Chemistry of the Czech Academy of Sciences, Dolejškova 3, 182 23 Prague 8, Czech Republic
| | - Christian Alcaraz
- Laboratoire de Chimie Physique, Bât. 350, UMR 8000, CNRS-Univ. Paris-Sud 11 and Paris Saclay, Centre Universitaire Paris-Sud, 91405 Orsay Cedex, France
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