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Marques HM. The inorganic chemistry of the cobalt corrinoids - an update. J Inorg Biochem 2023; 242:112154. [PMID: 36871417 DOI: 10.1016/j.jinorgbio.2023.112154] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2023] [Revised: 01/23/2023] [Accepted: 01/26/2023] [Indexed: 02/05/2023]
Abstract
The inorganic chemistry of the cobalt corrinoids, derivatives of vitamin B12, is reviewed, with particular emphasis on equilibrium constants for, and kinetics of, their axial ligand substitution reactions. The role the corrin ligand plays in controlling and modifying the properties of the metal ion is emphasised. Other aspects of the chemistry of these compounds, including their structure, corrinoid complexes with metals other than cobalt, the redox chemistry of the cobalt corrinoids and their chemical redox reactions, and their photochemistry are discussed. Their role as catalysts in non-biological reactions and aspects of their organometallic chemistry are briefly mentioned. Particular mention is made of the role that computational methods - and especially DFT calculations - have played in developing our understanding of the inorganic chemistry of these compounds. A brief overview of the biological chemistry of the B12-dependent enzymes is also given for the reader's convenience.
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Affiliation(s)
- Helder M Marques
- Molecular Sciences Institute, School of Chemistry, University of the Witwatersrand, Johannesburg 2050, South Africa.
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2
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Sension RJ, Chung T, Dewan P, McClain TP, Lamb RM, Penner-Hahn JE. Time-resolved spectroscopy: Advances in understanding the electronic structure and dynamics of cobalamins. Methods Enzymol 2022; 669:303-331. [DOI: 10.1016/bs.mie.2022.01.010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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3
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Moitra T, Coriani S, Cabral Tenorio BN. Inner-shell photoabsorption and photoionisation cross-sections of valence excited states from asymmetric-Lanczos equation-of-motion coupled cluster singles and doubles theory. Mol Phys 2021. [DOI: 10.1080/00268976.2021.1980235] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Torsha Moitra
- DTU Chemistry–Department of Chemistry, Technical University of Denmark, Kongens Lyngby, Denmark
| | - Sonia Coriani
- DTU Chemistry–Department of Chemistry, Technical University of Denmark, Kongens Lyngby, Denmark
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4
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Weinstain R, Slanina T, Kand D, Klán P. Visible-to-NIR-Light Activated Release: From Small Molecules to Nanomaterials. Chem Rev 2020; 120:13135-13272. [PMID: 33125209 PMCID: PMC7833475 DOI: 10.1021/acs.chemrev.0c00663] [Citation(s) in RCA: 261] [Impact Index Per Article: 65.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2020] [Indexed: 02/08/2023]
Abstract
Photoactivatable (alternatively, photoremovable, photoreleasable, or photocleavable) protecting groups (PPGs), also known as caged or photocaged compounds, are used to enable non-invasive spatiotemporal photochemical control over the release of species of interest. Recent years have seen the development of PPGs activatable by biologically and chemically benign visible and near-infrared (NIR) light. These long-wavelength-absorbing moieties expand the applicability of this powerful method and its accessibility to non-specialist users. This review comprehensively covers organic and transition metal-containing photoactivatable compounds (complexes) that absorb in the visible- and NIR-range to release various leaving groups and gasotransmitters (carbon monoxide, nitric oxide, and hydrogen sulfide). The text also covers visible- and NIR-light-induced photosensitized release using molecular sensitizers, quantum dots, and upconversion and second-harmonic nanoparticles, as well as release via photodynamic (photooxygenation by singlet oxygen) and photothermal effects. Release from photoactivatable polymers, micelles, vesicles, and photoswitches, along with the related emerging field of photopharmacology, is discussed at the end of the review.
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Affiliation(s)
- Roy Weinstain
- School
of Plant Sciences and Food Security, Faculty of Life Sciences, Tel-Aviv University, Tel-Aviv 6997801, Israel
| | - Tomáš Slanina
- Institute
of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo nám. 2, 166 10 Prague, Czech Republic
| | - Dnyaneshwar Kand
- School
of Plant Sciences and Food Security, Faculty of Life Sciences, Tel-Aviv University, Tel-Aviv 6997801, Israel
| | - Petr Klán
- Department
of Chemistry and RECETOX, Faculty of Science, Masaryk University, Kamenice 5, 625 00 Brno, Czech Republic
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5
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Miller NA, Kaneshiro AK, Konar A, Alonso-Mori R, Britz A, Deb A, Glownia JM, Koralek JD, Mallik L, Meadows JH, Michocki LB, van Driel TB, Koutmos M, Padmanabhan S, Elías-Arnanz M, Kubarych KJ, Marsh ENG, Penner-Hahn JE, Sension RJ. The Photoactive Excited State of the B 12-Based Photoreceptor CarH. J Phys Chem B 2020; 124:10732-10738. [PMID: 33174757 DOI: 10.1021/acs.jpcb.0c09428] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
We have used transient absorption spectroscopy in the UV-visible and X-ray regions to characterize the excited state of CarH, a protein photoreceptor that uses a form of B12, adenosylcobalamin (AdoCbl), to sense light. With visible excitation, a nanosecond-lifetime photoactive excited state is formed with unit quantum yield. The time-resolved X-ray absorption near edge structure difference spectrum of this state demonstrates that the excited state of AdoCbl in CarH undergoes only modest structural expansion around the central cobalt, a behavior similar to that observed for methylcobalamin rather than for AdoCbl free in solution. We propose a new mechanism for CarH photoreactivity involving formation of a triplet excited state. This allows the sensor to operate with high quantum efficiency and without formation of potentially dangerous side products. By stabilizing the excited electronic state, CarH controls reactivity of AdoCbl and enables slow reactions that yield nonreactive products and bypass bond homolysis and reactive radical species formation.
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Affiliation(s)
- Nicholas A Miller
- Department of Chemistry, University of Michigan, 930 N University Ave. Ann Arbor, Michigan 48109-1055, United States
| | - April K Kaneshiro
- Department of Biological Chemistry, University of Michigan, 1150 W. Medical Center Dr., Ann Arbor, Michigan 48109-0600, United States
| | - Arkaprabha Konar
- Department of Physics, University of Michigan, 450 Church Street, Ann Arbor, Michigan 48109-1040, United States
| | - Roberto Alonso-Mori
- Linac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Alexander Britz
- Linac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States.,Stanford PULSE Institute, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Aniruddha Deb
- Department of Chemistry, University of Michigan, 930 N University Ave. Ann Arbor, Michigan 48109-1055, United States.,Department of Biophysics, University of Michigan, 930 N University Ave. Ann Arbor, Michigan 48109-1055, United States
| | - James M Glownia
- Linac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Jake D Koralek
- Linac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Leena Mallik
- Department of Chemistry, University of Michigan, 930 N University Ave. Ann Arbor, Michigan 48109-1055, United States
| | - Joseph H Meadows
- Department of Chemistry, University of Michigan, 930 N University Ave. Ann Arbor, Michigan 48109-1055, United States
| | - Lindsay B Michocki
- Department of Chemistry, University of Michigan, 930 N University Ave. Ann Arbor, Michigan 48109-1055, United States
| | - Tim B van Driel
- Linac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Markos Koutmos
- Department of Chemistry, University of Michigan, 930 N University Ave. Ann Arbor, Michigan 48109-1055, United States.,Department of Biophysics, University of Michigan, 930 N University Ave. Ann Arbor, Michigan 48109-1055, United States
| | - S Padmanabhan
- Instituto de Química Física "Rocasolano", Consejo Superior de Investigaciones Científicas, Madrid 28006, Spain
| | - Montserrat Elías-Arnanz
- Departamento de Genética y Microbiología, Área de Genética (Unidad Asociada al Instituto de Química Física "Rocasolano", Consejo Superior de Investigaciones Científicas), Facultad de Biología, Universidad de Murcia, Murcia 30100, Spain
| | - Kevin J Kubarych
- Department of Chemistry, University of Michigan, 930 N University Ave. Ann Arbor, Michigan 48109-1055, United States
| | - E Neil G Marsh
- Department of Chemistry, University of Michigan, 930 N University Ave. Ann Arbor, Michigan 48109-1055, United States
| | - James E Penner-Hahn
- Department of Chemistry, University of Michigan, 930 N University Ave. Ann Arbor, Michigan 48109-1055, United States.,Department of Biophysics, University of Michigan, 930 N University Ave. Ann Arbor, Michigan 48109-1055, United States
| | - Roseanne J Sension
- Department of Chemistry, University of Michigan, 930 N University Ave. Ann Arbor, Michigan 48109-1055, United States.,Department of Physics, University of Michigan, 450 Church Street, Ann Arbor, Michigan 48109-1040, United States.,Department of Biophysics, University of Michigan, 930 N University Ave. Ann Arbor, Michigan 48109-1055, United States
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6
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Miller NA, Michocki LB, Alonso-Mori R, Britz A, Deb A, DePonte DP, Glownia JM, Kaneshiro AK, Kieninger C, Koralek J, Meadows JH, van Driel TB, Kräutler B, Kubarych KJ, Penner-Hahn JE, Sension RJ. Antivitamins B 12 in a Microdrop: The Excited-State Structure of a Precious Sample Using Transient Polarized X-ray Absorption Near-Edge Structure. J Phys Chem Lett 2019; 10:5484-5489. [PMID: 31483136 DOI: 10.1021/acs.jpclett.9b02202] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Polarized transient X-ray absorption near-edge structure (XANES) was used to probe the excited-state structure of a photostable B12 antivitamin (Coβ-2-(2,4-difluorophenyl)-ethynylcobalamin, F2PhEtyCbl). A drop-on-demand delivery system synchronized to the LCLS X-ray free electron laser pulses was implemented and used to measure the XANES difference spectrum 12 ps following excitation, exposing only ∼45 μL of sample. Unlike cyanocobalamin (CNCbl), where the Co-C bond expands 15-20%, the excited state of F2PhEtyCbl is characterized by little change in the Co-C bond, suggesting that the acetylide linkage raises the barrier for expansion of the Co-C bond. In contrast, the lower axial Co-NDMB bond is elongated in the excited state of F2PhEtyCbl by ca. 10% or more, comparable to the 10% elongation observed for Co-NDMB in CNCbl.
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Affiliation(s)
- Nicholas A Miller
- Department of Chemistry , University of Michigan , 930 North University Avenue , Ann Arbor , Michigan 48109-1055 , United States
| | - Lindsay B Michocki
- Department of Chemistry , University of Michigan , 930 North University Avenue , Ann Arbor , Michigan 48109-1055 , United States
| | - Roberto Alonso-Mori
- Linac Coherent Light Source , SLAC National Accelerator Laboratory , 2575 Sand Hill Road , Menlo Park , California 94025 , United States
| | - Alexander Britz
- Linac Coherent Light Source , SLAC National Accelerator Laboratory , 2575 Sand Hill Road , Menlo Park , California 94025 , United States
- Stanford PULSE Institute , SLAC National Accelerator Laboratory , 2575 Sand Hill Road , Menlo Park , California 94025 , United States
| | - Aniruddha Deb
- Department of Chemistry , University of Michigan , 930 North University Avenue , Ann Arbor , Michigan 48109-1055 , United States
- Biophysics , University of Michigan , 930 North University Avenue , Ann Arbor , Michigan 48109-1055 , United States
| | - Daniel P DePonte
- Linac Coherent Light Source , SLAC National Accelerator Laboratory , 2575 Sand Hill Road , Menlo Park , California 94025 , United States
| | - James M Glownia
- Linac Coherent Light Source , SLAC National Accelerator Laboratory , 2575 Sand Hill Road , Menlo Park , California 94025 , United States
| | - April K Kaneshiro
- Department of Biological Chemistry , 1150 West Medical Center Drive , Ann Arbor , Michigan 48109-0600 , United States
| | - Christoph Kieninger
- Institute of Organic Chemistry & Center for Molecular Biosciences , University of Innsbruck , Innrain 80/82 , A-6020 Innsbruck , Austria
| | - Jake Koralek
- Linac Coherent Light Source , SLAC National Accelerator Laboratory , 2575 Sand Hill Road , Menlo Park , California 94025 , United States
| | - Joseph H Meadows
- Department of Chemistry , University of Michigan , 930 North University Avenue , Ann Arbor , Michigan 48109-1055 , United States
| | - Tim B van Driel
- Linac Coherent Light Source , SLAC National Accelerator Laboratory , 2575 Sand Hill Road , Menlo Park , California 94025 , United States
| | - Bernhard Kräutler
- Institute of Organic Chemistry & Center for Molecular Biosciences , University of Innsbruck , Innrain 80/82 , A-6020 Innsbruck , Austria
| | - Kevin J Kubarych
- Department of Chemistry , University of Michigan , 930 North University Avenue , Ann Arbor , Michigan 48109-1055 , United States
- Biophysics , University of Michigan , 930 North University Avenue , Ann Arbor , Michigan 48109-1055 , United States
| | - James E Penner-Hahn
- Department of Chemistry , University of Michigan , 930 North University Avenue , Ann Arbor , Michigan 48109-1055 , United States
- Biophysics , University of Michigan , 930 North University Avenue , Ann Arbor , Michigan 48109-1055 , United States
| | - Roseanne J Sension
- Department of Chemistry , University of Michigan , 930 North University Avenue , Ann Arbor , Michigan 48109-1055 , United States
- Biophysics , University of Michigan , 930 North University Avenue , Ann Arbor , Michigan 48109-1055 , United States
- Department of Physics , University of Michigan , 450 Church Street , Ann Arbor , Michigan 48109-1040 , United States
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7
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Michocki LB, Miller NA, Alonso-Mori R, Britz A, Deb A, Glownia JM, Kaneshiro AK, Konar A, Koralek J, Meadows JH, Sofferman DL, Song S, Toda MJ, van Driel TB, Kozlowski PM, Kubarych KJ, Penner-Hahn JE, Sension RJ. Probing the Excited State of Methylcobalamin Using Polarized Time-Resolved X-ray Absorption Spectroscopy. J Phys Chem B 2019; 123:6042-6048. [PMID: 31290669 DOI: 10.1021/acs.jpcb.9b05854] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
We use picosecond time-resolved polarized X-ray absorption near-edge structure (XANES) measurements to probe the structure of the long-lived photoexcited state of methylcobalamin (MeCbl) and the cob(II)alamin photoproduct formed following photoexcitation of adenosylcobalamin (AdoCbl, coenzyme B12). For MeCbl, we used 520 nm excitation and a time delay of 100 ps to avoid the formation of cob(II)alamin. We find only small spectral changes in the equatorial and axial directions, which we interpret as arising from small (<∼0.05 Å) changes in both the equatorial and axial distances. This confirms expectations based on prior UV-visible transient absorption measurements and theoretical simulations. We do not find evidence for the significant elongation of the Co-C bond reported by Subramanian [ J. Phys. Chem. Lett. 2018 , 9 , 1542 - 1546 ] following 400 nm excitation. For AdoCbl, we resolve the difference XANES contributions along three unique molecular axes by exciting with both 540 and 365 nm light, demonstrating that the spectral changes are predominantly polarized along the axial direction, consistent with the loss of axial ligation. These data suggest that the microsecond "recombination product" identified by Subramanian et al. is actually the cob(II)alamin photoproduct that is produced following bond homolysis of MeCbl with 400 nm excitation. Our results highlight the pronounced advantage of using polarization-selective transient X-ray absorption for isolating structural dynamics in systems undergoing atomic displacements that are strongly correlated to the exciting optical polarization.
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Affiliation(s)
| | | | - Roberto Alonso-Mori
- Linac Coherent Light Source , SLAC National Accelerator Laboratory , 2575 Sand Hill Road , Menlo Park , California 94025 , United States
| | - Alexander Britz
- Linac Coherent Light Source , SLAC National Accelerator Laboratory , 2575 Sand Hill Road , Menlo Park , California 94025 , United States
| | | | - James M Glownia
- Linac Coherent Light Source , SLAC National Accelerator Laboratory , 2575 Sand Hill Road , Menlo Park , California 94025 , United States
| | - April K Kaneshiro
- Department of Biological Chemistry , University of Michigan , 1150 W. Medical Center Dr. , Ann Arbor , Michigan 48109-0600 , United States
| | | | - Jake Koralek
- Linac Coherent Light Source , SLAC National Accelerator Laboratory , 2575 Sand Hill Road , Menlo Park , California 94025 , United States
| | | | | | - Sanghoon Song
- Linac Coherent Light Source , SLAC National Accelerator Laboratory , 2575 Sand Hill Road , Menlo Park , California 94025 , United States
| | - Megan J Toda
- Department of Chemistry , University of Louisville , 2320 South Brook Street , Louisville , Kentucky 40292 , United States
| | - Tim B van Driel
- Linac Coherent Light Source , SLAC National Accelerator Laboratory , 2575 Sand Hill Road , Menlo Park , California 94025 , United States
| | - Pawel M Kozlowski
- Department of Chemistry , University of Louisville , 2320 South Brook Street , Louisville , Kentucky 40292 , United States
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8
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Toda MJ, Lodowski P, Mamun AA, Jaworska M, Kozlowski PM. Photolytic properties of the biologically active forms of vitamin B12. Coord Chem Rev 2019. [DOI: 10.1016/j.ccr.2018.12.017] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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9
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Vaid FH, Zahid S, Faiyaz A, Qadeer K, Gul W, Anwar Z, Ahmad I. Photolysis of methylcobalamin in aqueous solution: A kinetic study. J Photochem Photobiol A Chem 2018. [DOI: 10.1016/j.jphotochem.2018.05.011] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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