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Shi X, Liang Y, Wen G, Evlashin SA, Fedorov FS, Ma X, Feng Y, Zheng J, Wang Y, Shi J, Liu Y, Zhu W, Guo P, Kim BH. Review of cathodic electroactive bacteria: Species, properties, applications and electron transfer mechanisms. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 946:174332. [PMID: 38950630 DOI: 10.1016/j.scitotenv.2024.174332] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/06/2024] [Revised: 06/24/2024] [Accepted: 06/25/2024] [Indexed: 07/03/2024]
Abstract
Cathodic electroactive bacteria (C-EAB) which are capable of accepting electrons from solid electrodes provide fresh avenues for pollutant removal, biosensor design, and electrosynthesis. This review systematically summarized the burgeoning applications of the C-EAB over the past decade, including 1) removal of nitrate, aromatic derivatives, and metal ions; 2) biosensing based on biocathode; 3) electrosynthesis of CH4, H2, organic carbon, NH3, and protein. In addition, the mechanisms of electron transfer by the C-EAB are also classified and summarized. Extracellular electron transfer and interspecies electron transfer have been introduced, and the electron transport mechanism of typical C-EAB, such as Shewanella oneidensis MR-1, has been combed in detail. By bringing to light this cutting-edge area of the C-EAB, this review aims to stimulate more interest and research on not only exploring great potential applications of these electron-accepting bacteria, but also developing steady and scalable processes harnessing biocathodes.
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Affiliation(s)
- Xinxin Shi
- Shaanxi Key Laboratory of Environmental Engineering, Key Laboratory of Northwest Water Resource, Environment and Ecology, School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Yutong Liang
- Shaanxi Key Laboratory of Environmental Engineering, Key Laboratory of Northwest Water Resource, Environment and Ecology, School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Gang Wen
- Shaanxi Key Laboratory of Environmental Engineering, Key Laboratory of Northwest Water Resource, Environment and Ecology, School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China.
| | - Stanislav A Evlashin
- Center for Materials Technologies, Skolkovo Institute of Science and Technology, the territory of the Skolkovo Innovation Center, Bolshoy Boulevard, 30, p.1, Moscow 121205, Russia
| | - Fedor S Fedorov
- Center for Photonic Science and Engineering, Skolkovo Institute of Science and Technology, the territory of the Skolkovo Innovation Center, Bolshoy Boulevard, 30, p.1, Moscow 121205, Russia
| | - Xinyue Ma
- Shaanxi Key Laboratory of Environmental Engineering, Key Laboratory of Northwest Water Resource, Environment and Ecology, School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Yujie Feng
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, No 73 Huanghe Road, Nangang District, Harbin 150090, China
| | - Junjie Zheng
- Shaanxi Key Laboratory of Environmental Engineering, Key Laboratory of Northwest Water Resource, Environment and Ecology, School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Yixing Wang
- Shaanxi Key Laboratory of Environmental Engineering, Key Laboratory of Northwest Water Resource, Environment and Ecology, School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Julian Shi
- Xi'an Institute for Innovative Earth Environment Research, Xi'an 710061, China
| | - Yang Liu
- Shaanxi Land Engineering Construction Group Co., Ltd, Xi'an 710061, China
| | - Weihuang Zhu
- Shaanxi Key Laboratory of Environmental Engineering, Key Laboratory of Northwest Water Resource, Environment and Ecology, School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Pengfei Guo
- School of Civil Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, China
| | - Byung Hong Kim
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, No 73 Huanghe Road, Nangang District, Harbin 150090, China; Korea Institute of Science & Technology, Seongbug-ku, Seoul 02792, Republic of Korea
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Deng Y, Wang JX, Ghosh B, Lu Y. Enzymatic CO 2 reduction catalyzed by natural and artificial Metalloenzymes. J Inorg Biochem 2024; 259:112669. [PMID: 39059175 DOI: 10.1016/j.jinorgbio.2024.112669] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2024] [Revised: 07/04/2024] [Accepted: 07/17/2024] [Indexed: 07/28/2024]
Abstract
The continuously increasing level of atmospheric CO2 in the atmosphere has led to global warming. Converting CO2 into other carbon compounds could mitigate its atmospheric levels and produce valuable products, as CO2 also serves as a plentiful and inexpensive carbon feedstock. However, the inert nature of CO2 poses a major challenge for its reduction. To meet the challenge, nature has evolved metalloenzymes using transition metal ions like Fe, Ni, Mo, and W, as well as electron-transfer partners for their functions. Mimicking these enzymes, artificial metalloenzymes (ArMs) have been designed using alternative protein scaffolds and various metallocofactors like Ni, Co, Re, Rh, and FeS clusters. Both the catalytic efficiency and the scope of CO2-reduction product of these ArMs have been improved over the past decade. This review first focuses on the natural metalloenzymes that directly reduce CO2 by discussing their structures and active sites, as well as the proposed reaction mechanisms. It then introduces the common strategies for electrochemical, photochemical, or photoelectrochemical utilization of these native enzymes for CO2 reduction and highlights the most recent advancements from the past five years. We also summarize principles of protein design for bio-inspired ArMs, comparing them with native enzymatic systems and outlining challenges and opportunities in enzymatic CO2 reduction.
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Affiliation(s)
- Yunling Deng
- Department of Chemistry, The University of Texas at Austin, Austin, TX 78712, United States of America
| | - Jing-Xiang Wang
- Department of Chemistry, The University of Texas at Austin, Austin, TX 78712, United States of America
| | - Barshali Ghosh
- Department of Chemistry, The University of Texas at Austin, Austin, TX 78712, United States of America
| | - Yi Lu
- Department of Chemistry, The University of Texas at Austin, Austin, TX 78712, United States of America.
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3
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Yang Z, Liu L, Zheng Y, Liu Z, Wang L, Yang RC, Liu Z, Wang Y, Chen Z. Enhanced catalytic performance through a single-atom preparation approach: a review on ruthenium-based catalysts. NANOSCALE 2024; 16:16744-16768. [PMID: 39175465 DOI: 10.1039/d4nr02289k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/24/2024]
Abstract
The outstanding catalytic properties of single-atom catalysts (SACs) stem from the maximum atom utilization and unique quantum size effects, leading to ever-increasing research interest in SACs in recent years. Ru-based SACs, which have shown excellent catalytic activity and selectivity, have been brought to the frontier of the research field due to their lower cost compared with other noble catalysts. The synthetic approaches for preparing Ru SACs are rather diverse in the open literature, covering a wide range of applications. In this review paper, we attempt to disclose the synthetic approaches for Ru-based SACs developed in the most recent years, such as defect engineering, coordination design, ion exchange, the dipping method, and electrochemical deposition etc., and discuss their representative applications in both electrochemical and organic reaction fields, with typical application examples given of: Li-CO2 batteries, N2 reduction, water splitting and oxidation of benzyl alcohols. The mechanisms behind their enhanced catalytic performance are discussed and their structure-property relationships are revealed in this review. Finally, future prospects and remaining unsolved issues with Ru SACs are also discussed so that a roadmap for the further development of Ru SACs is established.
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Affiliation(s)
- Ziyi Yang
- College of Chemical Engineering, Zhejiang University of Technology, Hangzhou, Zhejiang 310014, P. R. China.
- School of Biological and Chemical Engineering, NingboTech University, Ningbo, Zhejiang 315100, P. R. China.
| | - Li Liu
- College of Chemical Engineering, Zhejiang University of Technology, Hangzhou, Zhejiang 310014, P. R. China.
- School of Biological and Chemical Engineering, NingboTech University, Ningbo, Zhejiang 315100, P. R. China.
| | - Yayun Zheng
- School of Biological and Chemical Engineering, NingboTech University, Ningbo, Zhejiang 315100, P. R. China.
| | - Zixuan Liu
- School of Biological and Chemical Engineering, NingboTech University, Ningbo, Zhejiang 315100, P. R. China.
| | - Lin Wang
- School of Biological and Chemical Engineering, NingboTech University, Ningbo, Zhejiang 315100, P. R. China.
| | - Richard Chunhui Yang
- Centre for Advanced Manufacturing Technology (CfAMT), School of Engineering, Design and Built Environment, Western Sydney University, Penrith, NSW 2751, Australia
| | - Zongjian Liu
- College of Chemical Engineering, Zhejiang University of Technology, Hangzhou, Zhejiang 310014, P. R. China.
| | - Yichao Wang
- Centre for Advanced Manufacturing Technology (CfAMT), School of Engineering, Design and Built Environment, Western Sydney University, Penrith, NSW 2751, Australia
- School of Science, RMIT University, Melbourne, VIC 3000, Australia.
| | - Zhengfei Chen
- School of Biological and Chemical Engineering, NingboTech University, Ningbo, Zhejiang 315100, P. R. China.
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Zhou S, Liu D, Fan K, Liu H, Zhang XD. Atomic-level design of biomimetic iron-sulfur clusters for biocatalysis. NANOSCALE 2024. [PMID: 39257356 DOI: 10.1039/d4nr02883j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/12/2024]
Abstract
Designing biomimetic materials with high activity and customized biological functions by mimicking the central structure of biomolecules has become an important avenue for the development of medical materials. As an essential electron carrier, the iron-sulfur (Fe-S) clusters have the advantages of simple structure and high electron transport capacity. To rationally design and accurately construct functional materials, it is crucial to clarify the electronic structure and conformational relationships of Fe-S clusters. However, due to the complex catalytic mechanism and synthetic process in vitro, it is hard to reveal the structure-activity relationship of Fe-S clusters accurately. This review introduces the main structural types of Fe-S clusters and their catalytic mechanisms first. Then, several typical structural design strategies of biomimetic Fe-S clusters are systematically introduced. Furthermore, the development of Fe-S clusters in the biocatalytic field is enumerated, including tumor treatment, antibacterial, virus inhibition and plant photoprotection. Finally, the problems and development directions of Fe-S clusters are summarized. This review aims to guide people to accurately understand and regulate the electronic structure of Fe-S at the atomic level, which is of great significance for designing biomimetic materials with specific functions and expanding their applications in biocatalysis.
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Affiliation(s)
- Sufei Zhou
- Tianjin Key Laboratory of Brain Science and Neuroengineering, Academy of Medical Engineering and Translational Medicine, Tianjin University, Tianjin 300072, China.
| | - Di Liu
- Tianjin Key Laboratory of Brain Science and Neuroengineering, Academy of Medical Engineering and Translational Medicine, Tianjin University, Tianjin 300072, China.
| | - Kelong Fan
- Key Laboratory of Protein and Peptide Drugs, Institute of Biophysics, Chinese Academy of Sciences, Beijing, 100101, China
| | - Haile Liu
- Key Laboratory of Water Security and Water Environment Protection in Plateau Intersection (NWNU), Ministry of Education; Key Lab of Bioelectrochemistry and Environmental Analysis of Gansu Province, College of Chemistry and Chemical Engineering, Northwest Normal University, Lanzhou 730070, China.
| | - Xiao-Dong Zhang
- Tianjin Key Laboratory of Brain Science and Neuroengineering, Academy of Medical Engineering and Translational Medicine, Tianjin University, Tianjin 300072, China.
- Department of Physics and Tianjin Key Laboratory of Low Dimensional Materials Physics and Preparing Technology, School of Sciences, Tianjin University, Tianjin 300350, China
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Xiong J, Reed C, Lavina B, Hu MY, Zhao J, Alp EE, Agapie T, Guo Y. 57Fe nuclear resonance vibrational spectroscopic studies of tetranuclear iron clusters bearing terminal iron(iii)-oxido/hydroxido moieties. Chem Sci 2024:d4sc03396e. [PMID: 39296996 PMCID: PMC11403573 DOI: 10.1039/d4sc03396e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2024] [Accepted: 09/08/2024] [Indexed: 09/21/2024] Open
Abstract
57Fe nuclear resonance vibrational spectroscopy (NRVS) has been applied to study a series of tetranuclear iron ([Fe4]) clusters based on a multidentate ligand platform (L3-) anchored by a 1,3,5-triarylbenzene linker and pyrazolate or (tertbutylamino)pyrazolate ligand (PzNH t Bu-). These clusters bear a terminal Fe(iii)-O/OH moiety at the apical position and three additional iron centers forming the basal positions. The three basal irons are connected with the apical iron center via a μ4-oxido ligand. Detailed vibrational analysis via density functional theory calculations revealed that strong NRVS spectral features below 400 cm-1 can be used as an oxidation state marker for the overall [Fe4] cluster core. The terminal Fe(iii)-O/OH stretching frequencies, which were observed in the range of 500-700 cm-1, can be strongly modulated (energy shifts of 20-40 cm-1 were observed) upon redox events at the three remote basal iron centers of the [Fe4] cluster without the change of the terminal Fe(iii) oxidation state and its coordination environment. Therefore, the current study provides a quantitative vibrational analysis of how the remote iron centers within the same iron cluster exert exquisite control of the chemical reactivities and thermodynamic properties of the specific iron site that is responsible for small molecule activation.
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Affiliation(s)
- Jin Xiong
- Department of Chemistry, Carnegie Mellon University Pittsburgh PA 15213 USA
| | - Christopher Reed
- Division of Chemistry and Chemical Engineering, California Institute of Technology CA 91125 USA
| | - Barbara Lavina
- Advanced Photon Source, Argonne National Laboratory Argonne Illinois 60439 USA
- Center for Advanced Radiation Source, University of Chicago Chicago Illinois 60439 USA
| | - Michael Y Hu
- Advanced Photon Source, Argonne National Laboratory Argonne Illinois 60439 USA
| | - Jiyong Zhao
- Advanced Photon Source, Argonne National Laboratory Argonne Illinois 60439 USA
| | - Esen E Alp
- Advanced Photon Source, Argonne National Laboratory Argonne Illinois 60439 USA
| | - Theodor Agapie
- Division of Chemistry and Chemical Engineering, California Institute of Technology CA 91125 USA
| | - Yisong Guo
- Department of Chemistry, Carnegie Mellon University Pittsburgh PA 15213 USA
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Zhang Y, Feng T, Zhou X, Zhang Z. Photoelectrocatalytic-Microbial Biohybrid for Nitrogen Reduction. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2024:e2407239. [PMID: 39233547 DOI: 10.1002/adma.202407239] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2024] [Revised: 08/26/2024] [Indexed: 09/06/2024]
Abstract
Nitrogen (N2) conversion to ammonia (NH3) in a mild condition is a big chemical challenge. The whole-cell diazotrophs based biological NH3 synthesis is one of the most promising strategies. Herein, the first attempt of photoelectrochemical-microbial (PEC-MB) biohybrid is contributed for artificial N2 fixation, where Azotobacter vinelandii (A. vinelandii) is interfaced directly with polydopamine encapsulated nickel oxide (NiO) nanosheets (NiO@PDA). By virtue of excellent bio-adhesive activity, high conductivity, and good biocompatibility of PDA layer, abundant A. vinelandii are effectively adsorbed on NiO@PDA to form NiO@PDA/A. vinelandii biohybrid, and the rationally designed biohybrid achieved a record-high NH3 production yield of 1.85 µmol h-1/108 cells (4.14 µmol h-1 cm-2). In addition, this biohybrid can operate both under illumination with a PEC model or in dark with an electrocatalytic (EC) model to implement long-term and successional NH3 synthesis. The enhancement mechanism of NH3 synthesis in NiO@PDA/A. vinelandii biohybrid can be ascribed to the increase of nicotinamide adenine dinucleotide-hydrogen (NADH) and adenosine 5-triphosphate (ATP) concentrations and over expression of nitrogen-fixing genes of nifH, nifD and nifK in nitrogenase. This innovative PEC-MB biohybrid strategy sheds light on the fundamental mechanism and establishes proof of concept of biotic-abiotic photosynthetic systems for sustainable chemical production.
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Affiliation(s)
- Yingjie Zhang
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai, 200241, China
| | - Tianhang Feng
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai, 200241, China
| | - Xue Zhou
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai, 200241, China
| | - Zhonghai Zhang
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai, 200241, China
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7
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Zhai X, Xue M, Zhao Q, Zheng Q, Song D, Tung CH, Wang W. Water-catalyzed iron-molybdenum carbyne formation in bimetallic acetylene transformation. Nat Commun 2024; 15:7729. [PMID: 39232032 PMCID: PMC11375111 DOI: 10.1038/s41467-024-52116-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2024] [Accepted: 08/26/2024] [Indexed: 09/06/2024] Open
Abstract
Transition metal carbyne complexes are of fundamental importance in carbon-carbon bond formation, alkyne metathesis, and alkyne coupling reactions. Most reported iron carbyne complexes are stabilized by incorporating heteroatoms. Here we show the synthesis of bioinspired FeMo heterobimetallic carbyne complexes by the conversion of C2H2 through a diverse series of intermediates. Key reactions discovered include the reduction of a μ-η2:η2-C2H2 ligand with a hydride to produce a vinyl ligand (μ-η1:η2-CH = CH2), tautomerization of the vinyl ligand to a carbyne (μ-CCH3), and protonation of either the vinyl or the carbyne compound to form a hydrido carbyne heterobimetallic complex. Mechanistic studies unveil the pivotal role of H2O as a proton shuttle, facilitating the proton transfer that converts the vinyl group to a bridging carbyne.
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Affiliation(s)
- Xiaofang Zhai
- College of Chemistry, Beijing Normal University, 100875, Beijing, China
| | - Minghui Xue
- School of Chemistry and Chemical Engineering, Shandong University, 250100, Jinan, China
| | - Qiuting Zhao
- College of Chemistry, Beijing Normal University, 100875, Beijing, China
| | - Qiucui Zheng
- College of Chemistry, Beijing Normal University, 100875, Beijing, China
| | - Datong Song
- Davenport Chemical Research Laboratories, Department of Chemistry, University of Toronto, 80 St. George Street, Toronto, ON, M5S 3H6, Canada.
| | - Chen-Ho Tung
- School of Chemistry and Chemical Engineering, Shandong University, 250100, Jinan, China
| | - Wenguang Wang
- College of Chemistry, Beijing Normal University, 100875, Beijing, China.
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8
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Boegli MC, Coffinet A, Bijani C, Simonneau A. Seven-Coordinate Group 6 Metal Hydrides Obtained by H 2 Activation at B(C 6F 5) 3 Adducts of N 2 Complexes: Frustrated Lewis Pair-Type Reactivity of The B-N Linkage. Chem Asian J 2024; 19:e202400451. [PMID: 38864406 DOI: 10.1002/asia.202400451] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2024] [Revised: 06/07/2024] [Accepted: 06/11/2024] [Indexed: 06/13/2024]
Abstract
The adducts 2M,R of general formula trans-[(L)M{R2P(CH2)2PR2}2{N2B(C6F5)3}] (L=ø or N2, M=Mo or W, R=Et or Ph), formed from Lewis acid-base pairing of B(C6F5)3 to a dinitrogen ligand of zero-valent group 6 bis(phosphine) complexes trans-[M{R2P(CH2)2PR2}2(N2)2] are shown to react with dihydrogen to afford hepta-coordinated bis(hydride) complexes [M(H)2{R2P(CH2)2PR2}{N2B(C6F5)3}] 3M,R which feature the rare ability to activate both dinitrogen and dihydrogen at a single metal center, except in the case where M=Mo and R=Ph for which fast precipitation of insoluble [Mo(H)4(dppe)2] (dppe=1,2-bis(diphenylphosphino)ethane) occurs. The frustrated Lewis pair (FLP)-related reactivity of the B-N linkage in compounds 3W,R was explored and led to distal N functionalization without involvement of the hydride ligands. It is shown in one example that the resulting bis(hydride) diazenido compounds may also be obtained through a sequence involving first FLP-type N-functionalization followed by oxidative addition of H2. Those oily compounds were found to have limited stability in solution or in their isolated states. Finally, treatment of 3W,Et with the Lewis base N,N-dimethylaminopyridine (DMAP) affords the simple but unknown bis(hydride)-dinitrogen species [W(H)2(depe)2(N2)] 11Et (depe=1,2-bis(diethylphosphino)ethane) which direct, selective formation from trans-[W(N2)2(depe)2] is not possible.
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Affiliation(s)
- Marie-Christine Boegli
- LCC-CNRS, Université de Toulouse, CNRS, UPS, 205 route de Narbonne, BP44099, F-31077, Toulouse cedex 4, France
| | - Anaïs Coffinet
- LCC-CNRS, Université de Toulouse, CNRS, UPS, 205 route de Narbonne, BP44099, F-31077, Toulouse cedex 4, France
| | - Christian Bijani
- LCC-CNRS, Université de Toulouse, CNRS, UPS, 205 route de Narbonne, BP44099, F-31077, Toulouse cedex 4, France
| | - Antoine Simonneau
- LCC-CNRS, Université de Toulouse, CNRS, UPS, 205 route de Narbonne, BP44099, F-31077, Toulouse cedex 4, France
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9
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Khatamian M, Malekani M, Fazayeli M, Yavari A. Improvement of photocatalytic ammonia production of cobalt ferrite nanoparticles utilizing microporous ZSM-5 type ferrisilicate zeolite. Sci Rep 2024; 14:20301. [PMID: 39218929 PMCID: PMC11366750 DOI: 10.1038/s41598-024-71016-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2024] [Accepted: 08/23/2024] [Indexed: 09/04/2024] Open
Abstract
The development of decarbonized synthesis approaches is a critical step in the fabrication of ammonia, an indispensable chemical and a potential carbon-neutral energy carrier. In this regard, the photocatalytic production technology has gained ample attention as a sustainable alternative to energy-intensive and environmentally detrimental Haber-Bosch process. Here, we present cobalt ferrite nanoparticles supported on microporous ZSM-5 type ferrisilicate zeolite as a desirable novel photocatalyst for the ammonia generation. The zeolite introduced as a microporous support increasing the catalytically active sites. A straightforward one-pot sol-gel method was used to synthesize cobalt ferrite (CoFe2O4) and CoFe2O4/ferrisilicate (CF/FS) nanocomposites with various weight percentages (10, 25 and 50%) of CoFe2O4. The photocatalytic performances of the samples in the production of ammonia were investigated under visible light irradiation. The highest rate of NH4+ production (484.74 µmol L-1 h-1) was achieved using the CF50%/FS photocatalyst. The distribution of < 50 nm-sized CoFe2O4 nanoparticles on the surface of the zeolite, as demonstrated by TEM images, and extensive BET surface areas are presented as convincing evidences for the improved photocatalytic activity paticularly in CF50%/FS photocatalyst.
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Affiliation(s)
- Maasoumeh Khatamian
- Department of Inorganic Chemistry, Faculty of Chemistry, University of Tabriz, Tabriz, Iran.
| | - Mohammad Malekani
- Department of Inorganic Chemistry, Faculty of Chemistry, University of Tabriz, Tabriz, Iran
| | - Monireh Fazayeli
- Department of Inorganic Chemistry, Faculty of Chemistry, University of Tabriz, Tabriz, Iran
| | - Azin Yavari
- Department of Inorganic Chemistry, Faculty of Chemistry, University of Tabriz, Tabriz, Iran
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10
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Siegbahn PEM. Sulfide release and rebinding in the mechanism for nitrogenase. J Comput Chem 2024. [PMID: 39189512 DOI: 10.1002/jcc.27494] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2024] [Revised: 08/09/2024] [Accepted: 08/13/2024] [Indexed: 08/28/2024]
Abstract
Nitrogenases are the only enzymes that activate the strong triple bond in N2. The mechanism for the activation has been very difficult to determine in spite of decades of work. In previous modeling studies it has been suggested that the mechanism for nitrogen activation starts out by four pre-activation steps (A0-A4) before catalysis. That suggestion led to excellent agreement with experimental Elecrtron Paramagnetic Resonance (EPR) observations in the step where N2 becomes protonated (E4). An important part of the pre-activation is that a sulfide is released. In the present paper, the details of the pre-activation are modeled, including the release of the sulfide. Several possible transition states for the release have been obtained. An A4(E0) state is reached which is very similar to the E4 state. For completeness, the steps going back from A4(E0) to A0 after catalysis are also modeled, including the insertion of a sulfide.
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Affiliation(s)
- Per E M Siegbahn
- Department of Organic Chemistry, Arrhenius Laboratory, Stockholm University, Stockholm, Sweden
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11
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Jiang H, Ryde U. Reaction Mechanism for CO Reduction by Mo-Nitrogenase Studied by QM/MM. Inorg Chem 2024; 63:15951-15963. [PMID: 39141025 DOI: 10.1021/acs.inorgchem.4c02323] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/15/2024]
Abstract
We have studied the conversion of two molecules of carbon monoxide to ethylene catalyzed by nitrogenase. We start from a recent crystal structure showing the binding of two carbon monoxide molecules to nitrogenase and employ the combined quantum mechanics and molecular mechanics approach. Our results indicate that the reaction is possible only if S2B dissociates as H2S (i.e., the charge of the FeMo cluster remains the same as in the E0 state, indicating that the Fe ions are formally reduced two steps when CO binds). Eight electrons and protons are needed for the reaction, and our mechanism suggests that the first four bind alternatively to the two carbon atoms. The C-C bond formation takes place already after the first protonation (in the E3 state). The next two protons bind to the same O atom, which then dissociates as water. In the same state (E8), the second C-O bond is cleaved, forming the ethylene product. The last two electrons and protons are used to form a water molecule that can be exchanged by S2B or by two CO molecules to start a new reaction cycle.
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Affiliation(s)
- Hao Jiang
- Department of Computational Chemistry, Lund University, Chemical Centre, P.O. Box 124, SE-221 00 Lund, Sweden
| | - Ulf Ryde
- Department of Computational Chemistry, Lund University, Chemical Centre, P.O. Box 124, SE-221 00 Lund, Sweden
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12
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Akter R, Shah SS, Ehsan MA, Shaikh MN, Zahir MH, Aziz MA, Ahammad AJS. Transition-metal-based Catalysts for Electrochemical Synthesis of Ammonia by Nitrogen Reduction Reaction: Advancing the Green Ammonia Economy. Chem Asian J 2024; 19:e202300797. [PMID: 37812018 DOI: 10.1002/asia.202300797] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2023] [Revised: 10/07/2023] [Accepted: 10/09/2023] [Indexed: 10/10/2023]
Abstract
Ammonia (NH3), a cornerstone in the chemical industry, has historically been pivotal for producing various valuable products, notably fertilizers. Its significance is further underscored in the modern energy landscape, where NH3 is seen as a promising medium for hydrogen storage and transportation. However, the conventional Haber-Bosch process, which accounts for approximately 170 million ton of NH3 produced globally each year, is energy-intensive and environmentally damaging. The electrochemical nitrogen reduction reaction (NRR) emerges as a sustainable alternative that operates in ambient conditions and uses renewable energy sources. Despite its potential, the NRR faces challenges, including the inherent stability of nitrogen and its competition with the hydrogen evolution reaction. Transition metals, especially ruthenium (Ru) and molybdenum (Mo), have demonstrated promise as catalysts, enhancing the efficiency of the NRR. Ru excels in catalytic activity, while Mo offers robustness. Strategies like heteroatom doping are being pursued to mitigate NRR challenges, especially the competing hydrogen evolution reaction. This review delves into the advancements of Ru and Mo-based catalysts for electrochemical ammonia synthesis, elucidating the NRR mechanisms, and championing the transition towards a greener ammonia economy. It also seeks to elucidate the core principles underpinning the NRR mechanism. This shift aims not only to address challenges inherent to traditional production methods but also to align with the overarching goals of global sustainability.
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Affiliation(s)
- Riva Akter
- Department of Chemistry, Jagannath University, Dhaka, 1100, Bangladesh
| | - Syed Shaheen Shah
- Department of Material Chemistry, Graduate School of Engineering, Kyoto University, Nishikyo-ku, Kyoto, 615-8520, Japan
| | - Muhammad Ali Ehsan
- Interdisciplinary Research Center for Hydrogen and Energy Storage (IRC-HES), King Fahd University of Petroleum & Minerals, KFUPM Box 5040, Dhahran, 31261, Saudi Arabia
| | - M Nasiruzzaman Shaikh
- Interdisciplinary Research Center for Hydrogen and Energy Storage (IRC-HES), King Fahd University of Petroleum & Minerals, KFUPM Box 5040, Dhahran, 31261, Saudi Arabia
| | - Md Hasan Zahir
- Interdisciplinary Research Center for Renewable Energy and Power Systems (IRC-REPS), King Fahd University of Petroleum & Minerals, Dhahran, 31261, Saudi Arabia
| | - Md Abdul Aziz
- Interdisciplinary Research Center for Hydrogen and Energy Storage (IRC-HES), King Fahd University of Petroleum & Minerals, KFUPM Box 5040, Dhahran, 31261, Saudi Arabia
| | - A J Saleh Ahammad
- Department of Chemistry, Jagannath University, Dhaka, 1100, Bangladesh
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13
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Shaw TE, Jones ZR, Adelman SL, Anderson NH, Bowes EG, Bauer ED, Dan D, Klouda J, Knope KE, Kozimor SA, MacInnes MM, Mocko V, Rocha FR, Root HD, Stein BW, Thompson JD, Wacker JN. PuCl 3{CoCp[OP(OEt) 2] 3}: transuranic elements entering the field of heterometallic molecular chemistry. Chem Sci 2024; 15:12754-12764. [PMID: 39148769 PMCID: PMC11323317 DOI: 10.1039/d4sc01767f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2024] [Accepted: 06/22/2024] [Indexed: 08/17/2024] Open
Abstract
Recent advances enabled the discovery of heterometallic molecules for many metals: main group, d-block, lanthanides, and some actinides (U, Th). These complexes have at least two different metals joined by bridging ligands or by direct metal-metal bonding interactions. They are attractive because they can enable chemical cooperativity between metals from different parts of the periodic table. Some heterometallics provide access to unique reactivity and others exhibit physical properties that cannot be accessed by homometallic species. We envisioned that transuranic heterometallics might similarly enable new transuranic chemistry, though synthetic routes to such compounds have yet to be developed. Reported here is the first synthesis of a molecular transuranic complex that contains plutonium (Pu) and cobalt (Co). Our analyses of PuCl3{CoCp[OP(OEt)2]3} showed Pu(iv) and Co(iii) were present and suggested that the Pu(iv) oxidation state was stabilized by the electron donating phosphite ligands. This synthetic method - and the demonstration that Pu(iv) can be stabilized in a heterobimetallic molecular setting - provides a foundation for further exploration of transuranic multimetallic chemistry.
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Affiliation(s)
- Thomas E Shaw
- Los Alamos National Laboratory (LANL) P. O. Box 1663, Los Alamos New Mexico 87545 USA
| | - Zachary R Jones
- Los Alamos National Laboratory (LANL) P. O. Box 1663, Los Alamos New Mexico 87545 USA
| | - Sara L Adelman
- Los Alamos National Laboratory (LANL) P. O. Box 1663, Los Alamos New Mexico 87545 USA
| | - Nickolas H Anderson
- Los Alamos National Laboratory (LANL) P. O. Box 1663, Los Alamos New Mexico 87545 USA
| | - Eric G Bowes
- Los Alamos National Laboratory (LANL) P. O. Box 1663, Los Alamos New Mexico 87545 USA
| | - Eric D Bauer
- Los Alamos National Laboratory (LANL) P. O. Box 1663, Los Alamos New Mexico 87545 USA
| | - David Dan
- Los Alamos National Laboratory (LANL) P. O. Box 1663, Los Alamos New Mexico 87545 USA
| | - Jan Klouda
- Los Alamos National Laboratory (LANL) P. O. Box 1663, Los Alamos New Mexico 87545 USA
| | - Karah E Knope
- Department of Chemistry, Georgetown University 37th and O Streets NW Washington, D.C. 20057 USA
| | - Stosh A Kozimor
- Los Alamos National Laboratory (LANL) P. O. Box 1663, Los Alamos New Mexico 87545 USA
| | - Molly M MacInnes
- Los Alamos National Laboratory (LANL) P. O. Box 1663, Los Alamos New Mexico 87545 USA
| | - Veronika Mocko
- Los Alamos National Laboratory (LANL) P. O. Box 1663, Los Alamos New Mexico 87545 USA
| | - Francisca R Rocha
- Los Alamos National Laboratory (LANL) P. O. Box 1663, Los Alamos New Mexico 87545 USA
| | - Harrison D Root
- Los Alamos National Laboratory (LANL) P. O. Box 1663, Los Alamos New Mexico 87545 USA
| | - Benjamin W Stein
- Los Alamos National Laboratory (LANL) P. O. Box 1663, Los Alamos New Mexico 87545 USA
| | - Joe D Thompson
- Los Alamos National Laboratory (LANL) P. O. Box 1663, Los Alamos New Mexico 87545 USA
| | - Jennifer N Wacker
- Los Alamos National Laboratory (LANL) P. O. Box 1663, Los Alamos New Mexico 87545 USA
- Department of Chemistry, Georgetown University 37th and O Streets NW Washington, D.C. 20057 USA
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14
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Xia J, Xu J, Yu B, Liang X, Qiu Z, Li H, Feng H, Li Y, Cai Y, Wei H, Li H, Xiang H, Zhuang Z, Wang D. A Metal-Sulfur-Carbon Catalyst Mimicking the Two-Component Architecture of Nitrogenase. Angew Chem Int Ed Engl 2024:e202412740. [PMID: 39107257 DOI: 10.1002/anie.202412740] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2024] [Revised: 08/04/2024] [Accepted: 08/06/2024] [Indexed: 08/09/2024]
Abstract
The production of ammonia (NH3) from nitrogen sources involves competitive adsorption of different intermediates and multiple electron and proton transfers, presenting grand challenges in catalyst design. In nature nitrogenases reduce dinitrogen to NH3 using two component proteins, in which electrons and protons are delivered from Fe protein to the active site in MoFe protein for transfer to the bound N2. We draw inspiration from this structural enzymology, and design a two-component metal-sulfur-carbon (M-S-C) catalyst composed of sulfur-doped carbon-supported ruthenium (Ru) single atoms (SAs) and nanoparticles (NPs) for the electrochemical reduction of nitrate (NO3 -) to NH3. The catalyst demonstrates a remarkable NH3 yield rate of ~37 mg L-1 h-1 and a Faradaic efficiency of ~97 % for over 200 hours, outperforming those consisting solely of SAs or NPs, and even surpassing most reported electrocatalysts. Our experimental and theoretical investigations reveal the critical role of Ru SAs with the coordination of S in promoting the formation of the HONO intermediate and the subsequent reduction reaction over the NP-surface nearby. Such process results in a more energetically accessible pathway for NO3 - reduction on Ru NPs co-existing with SAs. This study proves a better understanding of how M-S-Cs act as a synthetic nitrogenase mimic during ammonia synthesis, and contributes to the future mechanism-based catalyst design.
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Affiliation(s)
- Junkai Xia
- State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, 311300, Hangzhou, P. R. China
- College of Environment and Resources, College of Carbon Neutrality, Zhejiang A&F University, 311300, Hangzhou, P. R. China
- College of Environment and Resources, College of Carbon Neutrality, Zhejiang A&F University, 311300, Hangzhou, P. R. China
| | - Jiawei Xu
- Jiangsu Key Laboratory of Numerical Simulation of Large Scale Complex Systems and School of Chemistry and Materials Science, Nanjing Normal University, 210023, Nanjing, China
| | - Bing Yu
- State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, 311300, Hangzhou, P. R. China
- College of Environment and Resources, College of Carbon Neutrality, Zhejiang A&F University, 311300, Hangzhou, P. R. China
- College of Environment and Resources, College of Carbon Neutrality, Zhejiang A&F University, 311300, Hangzhou, P. R. China
| | - Xiao Liang
- Department of Chemistry, Tsinghua University, 100084, Beijing, P. R. China
| | - Zhen Qiu
- State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, 311300, Hangzhou, P. R. China
- College of Environment and Resources, College of Carbon Neutrality, Zhejiang A&F University, 311300, Hangzhou, P. R. China
- College of Environment and Resources, College of Carbon Neutrality, Zhejiang A&F University, 311300, Hangzhou, P. R. China
| | - Hao Li
- Advanced Institute for Materials Research (WPI-AIMR), Tohoku University, 980-8577, Sendai, Japan
| | - Huajun Feng
- State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, 311300, Hangzhou, P. R. China
- College of Environment and Resources, College of Carbon Neutrality, Zhejiang A&F University, 311300, Hangzhou, P. R. China
- College of Environment and Resources, College of Carbon Neutrality, Zhejiang A&F University, 311300, Hangzhou, P. R. China
| | - Yongfu Li
- State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, 311300, Hangzhou, P. R. China
- College of Environment and Resources, College of Carbon Neutrality, Zhejiang A&F University, 311300, Hangzhou, P. R. China
| | - Yanjiang Cai
- State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, 311300, Hangzhou, P. R. China
- College of Environment and Resources, College of Carbon Neutrality, Zhejiang A&F University, 311300, Hangzhou, P. R. China
- College of Environment and Resources, College of Carbon Neutrality, Zhejiang A&F University, 311300, Hangzhou, P. R. China
| | - Haiyan Wei
- Jiangsu Key Laboratory of Numerical Simulation of Large Scale Complex Systems and School of Chemistry and Materials Science, Nanjing Normal University, 210023, Nanjing, China
| | - Haitao Li
- Institute for Energy Research, Jiangsu University, 212013, Zhenjiang, P. R. China
| | - Hai Xiang
- College of Environment and Resources, College of Carbon Neutrality, Zhejiang A&F University, 311300, Hangzhou, P. R. China
| | - Zechao Zhuang
- Department of Chemistry, Tsinghua University, 100084, Beijing, P. R. China
- Department of Chemical Engineering, Columbia University, 10027, New York, NY, USA
| | - Dingsheng Wang
- Department of Chemistry, Tsinghua University, 100084, Beijing, P. R. China
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15
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Zhang L, Einsle O. Architecture of the RNF1 complex that drives biological nitrogen fixation. Nat Chem Biol 2024; 20:1078-1085. [PMID: 38890433 DOI: 10.1038/s41589-024-01641-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2022] [Accepted: 05/10/2024] [Indexed: 06/20/2024]
Abstract
Biological nitrogen fixation requires substantial metabolic energy in form of ATP as well as low-potential electrons that must derive from central metabolism. During aerobic growth, the free-living soil diazotroph Azotobacter vinelandii transfers electrons from the key metabolite NADH to the low-potential ferredoxin FdxA that serves as a direct electron donor to the dinitrogenase reductases. This process is mediated by the RNF complex that exploits the proton motive force over the cytoplasmic membrane to lower the midpoint potential of the transferred electron. Here we report the cryogenic electron microscopy structure of the nitrogenase-associated RNF complex of A. vinelandii, a seven-subunit membrane protein assembly that contains four flavin cofactors and six iron-sulfur centers. Its function requires the strict coupling of electron and proton transfer but also involves major conformational changes within the assembly that can be traced with a combination of electron microscopy and modeling.
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Affiliation(s)
- Lin Zhang
- Institut für Biochemie, Albert-Ludwigs-Universität Freiburg, Freiburg, Germany
| | - Oliver Einsle
- Institut für Biochemie, Albert-Ludwigs-Universität Freiburg, Freiburg, Germany.
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16
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Alayoglu P, Rathnayaka SC, Chang T, Wang SG, Chen YS, Mankad NP. Cu site differentiation in tetracopper(i) sulfide clusters enables biomimetic N 2O reduction. Chem Sci 2024:d4sc00701h. [PMID: 39129770 PMCID: PMC11306996 DOI: 10.1039/d4sc00701h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2024] [Accepted: 07/31/2024] [Indexed: 08/13/2024] Open
Abstract
Copper clusters feature prominently in both metalloenzymes and synthetic nanoclusters that mediate catalytic redox transformations of gaseous small molecules. Such reactions are critical to biological energy conversion and are expected to be crucial parts of renewable energy economies. However, the precise roles of individual metal atoms within clusters are difficult to elucidate, particularly for cluster systems that are dynamic under operating conditions. Here, we present a metal site-specific analysis of synthetic Cu4(μ4-S) clusters that mimic the Cu Z active site of the nitrous oxide reductase enzyme. Leveraging the ability to obtain structural snapshots of both inactive and active forms of the synthetic model system, we analyzed both states using resonant X-ray diffraction anomalous fine structure (DAFS), a technique that enables X-ray absorption profiles of individual metal sites within a cluster to be extracted independently. Using DAFS, we found that a change in cluster geometry between the inactive and active states is correlated to Cu site differentiation that is presumably required for efficient activation of N2O gas. More precisely, we hypothesize that the Cu δ+⋯Cu δ- pairs produced upon site differentiation are poised for N2O activation, as supported by computational modeling. These results provide an unprecedented level of detail on the roles of individual metal sites within the synthetic cluster system and how those roles interplay with cluster geometry to impact the reactivity function. We expect this fundamental knowledge to inform understanding of metal clusters in settings ranging from (bio)molecular to nanocluster to extended solid systems involved in energy conversion.
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Affiliation(s)
- Pinar Alayoglu
- Department of Chemistry, University of Illinois at Chicago Chicago IL 60607 USA
| | - Suresh C Rathnayaka
- Department of Chemistry, University of Illinois at Chicago Chicago IL 60607 USA
| | - Tieyan Chang
- ChemMatCARS, The University of Chicago Argonne IL 60439 USA
| | | | - Yu-Sheng Chen
- ChemMatCARS, The University of Chicago Argonne IL 60439 USA
| | - Neal P Mankad
- Department of Chemistry, University of Illinois at Chicago Chicago IL 60607 USA
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17
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Zhang X, Jiang X, Zhao Q, Li Y, Feng L, Ye S, Tung CH, Wang W. Synthesis and Characterization of Bridging-Diazene Diiron Half-Sandwich Complexes: The Role of Sulfur Hydrogen Bonding. Inorg Chem 2024; 63:14040-14049. [PMID: 39007501 DOI: 10.1021/acs.inorgchem.4c01783] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/16/2024]
Abstract
We report two bridging-diazene diiron complexes [Cp*Fe(8-quinolinethiolate)]2(μ-N2H2) (1-N2H2) and [Cp*Fe(1,2-Cy2PC6H4S)]2(μ-N2H2) (2-N2H2), synthesized by the reaction of hydrazine with the corresponding thiolate-based iron half-sandwich complex, [Cp*Fe(8-quinolinethiolate)]2 (1) and Cp*Fe(1,2-Cy2PC6H4S) (2). Crystallographic analysis reveals that the thiolate sites in 1-N2H2 and 2-N2H2 can engage in N-H···S hydrogen bonding with the diazene protons. 1-N2H2 is thermally stable in both solid and solution states, allowing for one-electron oxidation to afford a cationic diazene radical complex [1-N2H2]+ at room temperature. In contrast, 2-N2H2 tends to undergo N2H2/N2 transformation, leading to the formation of a Fe(III)-H species by the loss of N2. In addition to stabilizing HN=NH species through the hydrogen bonding, the thiolate-based ligands also seem to facilitate proton-coupled electron transfer, thereby promoting N-H cleavage.
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Affiliation(s)
- Xin Zhang
- School of Chemistry and Chemical Engineering, Shandong University, Jinan 250100, China
| | - Xuebin Jiang
- State Key Laboratory of Catalysis, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Qiuting Zhao
- College of Chemistry, Beijing Normal University, Beijing 100875, China
| | - Yongxian Li
- College of Chemistry, Beijing Normal University, Beijing 100875, China
| | - Lei Feng
- School of Chemistry and Chemical Engineering, Shandong University, Jinan 250100, China
| | - Shengfa Ye
- State Key Laboratory of Catalysis, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China
| | - Chen-Ho Tung
- School of Chemistry and Chemical Engineering, Shandong University, Jinan 250100, China
| | - Wenguang Wang
- School of Chemistry and Chemical Engineering, Shandong University, Jinan 250100, China
- College of Chemistry, Beijing Normal University, Beijing 100875, China
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18
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Harris DF, Rucker HR, Garcia AK, Yang ZY, Chang SD, Feinsilber H, Kaçar B, Seefeldt LC. Ancient nitrogenases are ATP dependent. mBio 2024; 15:e0127124. [PMID: 38869277 PMCID: PMC11253609 DOI: 10.1128/mbio.01271-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2024] [Accepted: 05/03/2024] [Indexed: 06/14/2024] Open
Abstract
Life depends on a conserved set of chemical energy currencies that are relics of early biochemistry. One of these is ATP, a molecule that, when paired with a divalent metal ion such as Mg2+, can be hydrolyzed to support numerous cellular and molecular processes. Despite its centrality to extant biochemistry, it is unclear whether ATP supported the function of ancient enzymes. We investigate the evolutionary necessity of ATP by experimentally reconstructing an ancestral variant of the N2-reducing enzyme nitrogenase. The Proterozoic ancestor is predicted to be ~540-2,300 million years old, post-dating the Great Oxidation Event. Growth rates under nitrogen-fixing conditions are ~80% of those of wild type in Azotobacter vinelandii. In the extant enzyme, the hydrolysis of two MgATP is coupled to electron transfer to support substrate reduction. The ancestor has a strict requirement for ATP with no other nucleotide triphosphate analogs (GTP, ITP, and UTP) supporting activity. Alternative divalent metal ions (Fe2+, Co2+, and Mn2+) support activity with ATP but with diminished activities compared to Mg2+, similar to the extant enzyme. Additionally, it is shown that the ancestor has an identical efficiency in ATP hydrolyzed per electron transferred to the extant of two. Our results provide direct laboratory evidence of ATP usage by an ancient enzyme.IMPORTANCELife depends on energy-carrying molecules to power many sustaining processes. There is evidence that these molecules may predate the rise of life on Earth, but how and when these dependencies formed is unknown. The resurrection of ancient enzymes provides a unique tool to probe the enzyme's function and usage of energy-carrying molecules, shedding light on their biochemical origins. Through experimental reconstruction, this research investigates the ancestral dependence of a nitrogen-fixing enzyme on the energy carrier ATP, a requirement for function in the modern enzyme. We show that the resurrected ancestor does not have generalist nucleotide specificity. Rather, the ancestor has a strict requirement for ATP, like the modern enzyme, with similar function and efficiency. The findings elucidate the early-evolved necessity of energy-yielding molecules, delineating their role in ancient biochemical processes. Ultimately, these insights contribute to unraveling the intricate tapestry of evolutionary biology and the origins of life-sustaining dependencies.
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Affiliation(s)
- Derek F. Harris
- Department of Chemistry and Biochemistry, Utah State University, Logan, Utah, USA
| | - Holly R. Rucker
- Department of Bacteriology, University of Wisconsin–Madison, Madison, Wisconsin, USA
| | - Amanda K. Garcia
- Department of Bacteriology, University of Wisconsin–Madison, Madison, Wisconsin, USA
| | - Zhi-Yong Yang
- Department of Chemistry and Biochemistry, Utah State University, Logan, Utah, USA
| | - Scott D. Chang
- Department of Bacteriology, University of Wisconsin–Madison, Madison, Wisconsin, USA
| | - Hannah Feinsilber
- Department of Chemistry and Biochemistry, Utah State University, Logan, Utah, USA
| | - Betül Kaçar
- Department of Bacteriology, University of Wisconsin–Madison, Madison, Wisconsin, USA
| | - Lance C. Seefeldt
- Department of Chemistry and Biochemistry, Utah State University, Logan, Utah, USA
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19
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Le Dé Q, Valyaev DA, Simonneau A. Nitrogen Fixation by Manganese Complexes - Waiting for the Rush? Chemistry 2024; 30:e202400784. [PMID: 38709147 DOI: 10.1002/chem.202400784] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2024] [Revised: 05/05/2024] [Accepted: 05/06/2024] [Indexed: 05/07/2024]
Abstract
Manganese is currently experiencing a great deal of attention in homogeneous catalysis as a sustainable alternative to platinum group metals due to its abundance, affordable price and low toxicity. While homogeneous nitrogen fixation employing well-defined transition metal complexes has been an important part of coordination chemistry, manganese derivatives have been only sporadically used in this research area. In this contribution, the authors systematically cover manganese organometallic chemistry related to N2 activation spanning almost 60 years, identify apparent pitfalls and outline encouraging perspectives for its future development.
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Affiliation(s)
- Quentin Le Dé
- LCC-CNRS, Université de Toulouse, CNRS, UPS, 205 route de Narbonne, BP44099, F-31077, Toulouse cedex 4, France
| | - Dmitry A Valyaev
- LCC-CNRS, Université de Toulouse, CNRS, UPS, 205 route de Narbonne, BP44099, F-31077, Toulouse cedex 4, France
| | - Antoine Simonneau
- LCC-CNRS, Université de Toulouse, CNRS, UPS, 205 route de Narbonne, BP44099, F-31077, Toulouse cedex 4, France
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20
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Strandgaard M, Seumer J, Jensen JH. Discovery of molybdenum based nitrogen fixation catalysts with genetic algorithms. Chem Sci 2024; 15:10638-10650. [PMID: 38994422 PMCID: PMC11234868 DOI: 10.1039/d4sc02227k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2024] [Accepted: 05/24/2024] [Indexed: 07/13/2024] Open
Abstract
Computational discovery of organometallic catalysts that effectively catalyze nitrogen fixation is a difficult task. The complexity of the chemical reactions involved and the lack of understanding of natures enzyme catalysts raises the need for intricate computational models. In this study, we use a dataset of 91 experimentally verified ligands as starting population for a Genetic Algorithm (GA) and use this to discover molybdenum based nitrogen fixation catalyst in trigonal bipyramidal and octahedral configurations. Through evolutionary discovery with a semi-empirical quantum method driven GA and a density functional theory (DFT) based screening process, we find 3 promising catalyst candidates that are shown to effectively catalyze the first protonation step of the Schrock cycle. Synthetic accessibility (SA) scores are used to guide the GA towards reasonable ligands and the work features a description of the GA framework, including pre-screening of catalyst candidates that involves assignment of metal coordination atoms and catalyst stereoisomers. This research thus not only offers insights into the specific field of molybdenum-based catalysts for nitrogen fixation but also demonstrates the broader applicability and potential of genetic algorithms in the field of catalyst discovery and materials science.
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Affiliation(s)
- Magnus Strandgaard
- Department of Chemistry, University of Copenhagen Denmark https://twitter.com/janhjensen
| | - Julius Seumer
- Department of Chemistry, University of Copenhagen Denmark https://twitter.com/janhjensen
| | - Jan H Jensen
- Department of Chemistry, University of Copenhagen Denmark https://twitter.com/janhjensen
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21
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Drena A, Fraker A, Thompson NB, Doan PE, Hoffman BM, McSkimming A. Terminal Hydride Complex of High-Spin Mn. J Am Chem Soc 2024; 146:18370-18378. [PMID: 38940813 PMCID: PMC11240256 DOI: 10.1021/jacs.4c03310] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2024] [Revised: 06/10/2024] [Accepted: 06/12/2024] [Indexed: 06/29/2024]
Abstract
The iron-molybdenum cofactor of nitrogenase (FeMoco) catalyzes fixation of N2 via Fe hydride intermediates. Our understanding of these species has relied heavily on the characterization of well-defined 3d metal hydride complexes, which serve as putative spectroscopic models. Although the Fe ions in FeMoco, a weak-field cluster, are expected to adopt locally high-spin Fe2+/3+ configurations, synthetically accessible hydride complexes featuring d5 or d6 electron counts are almost exclusively low-spin. We report herein the isolation of a terminal hydride complex of four-coordinate, high-spin (d5; S = 5/2) Mn2+. Electron paramagnetic resonance and electron-nuclear double resonance studies reveal an unusually large degree of spin density on the hydrido ligand. In light of the isoelectronic relationship between Mn2+ and Fe3+, our results are expected to inform our understanding of the valence electronic structures of reactive hydride intermediates derived from FeMoco.
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Affiliation(s)
- Alex Drena
- Department
of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
| | - Addison Fraker
- Department
of Chemistry, Tulane University, New Orleans, Louisiana 70118, United States
| | - Niklas B. Thompson
- Chemical
Sciences and Engineering Division, Argonne
National Laboratory, Lemont, Illinois 60439, United States
| | - Peter E. Doan
- Department
of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
| | - Brian M. Hoffman
- Department
of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
| | - Alex McSkimming
- Department
of Chemistry, Tulane University, New Orleans, Louisiana 70118, United States
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22
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Jiang H, Ryde U. Putative reaction mechanism of nitrogenase with a half-dissociated S2B ligand. Dalton Trans 2024; 53:11500-11513. [PMID: 38916132 DOI: 10.1039/d4dt00937a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/26/2024]
Abstract
We have studied whether dissociation of the S2B sulfide ligand from one of its two coordinating Fe ions may affect the later parts of the reaction mechanism of nitrogenase. Such dissociation has been shown to be favourable for the E2-E4 states in the reaction mechanism, but previous studies have assumed that S2B either remains bridging or has fully dissociated from the active-site FeMo cluster. We employ combined quantum mechanical and molecular mechanical (QM/MM) calculations with two density-functional theory methods, r2SCAN and TPSSh. To make dissociation of S2B possible, we have added a proton to this group throughout the reaction. We study the reaction starting from the E4 state with N2H2 bound to the cluster. Our results indicate that half-dissociation of S2B is unfavourable in most steps of the reaction mechanism. We observe favourable half-dissociation of S2B only when NH or NH2 is bound to the cluster, bridging Fe2 and Fe6. However, the former state is most likely not involved in the reaction mechanism and the latter state is only an intermittent intermediate of the E7 state. Therefore, half-dissociation of S2B seems to play only a minor role in the later parts of the reaction mechanism of nitrogenase. Our suggested mechanism with a protonated S2B is alternating (the two N atoms of the substrate is protonated in an alternating manner) and the substrate prefers to bind to Fe2, in contrast to the preferred binding to Fe6 observed when S2B is unprotonated and bridging Fe2 and Fe6.
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Affiliation(s)
- Hao Jiang
- Department of Computational Chemistry, Lund University, Chemical Centre, P. O. Box 124, SE-221 00 Lund, Sweden.
| | - Ulf Ryde
- Department of Computational Chemistry, Lund University, Chemical Centre, P. O. Box 124, SE-221 00 Lund, Sweden.
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23
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Ebrahim HS, Deyab NM, Shaheen BS, Gabr AMM, Allam NK. In Vitro: The Extraordinary Enhancement in Rutin Accumulation and Antioxidant Activity in Philodendron "Imperial Red" Plantlets Using Ti-Mo-Ni-O Nanotubes as a Novel Elicitor. BIOTECH 2024; 13:24. [PMID: 39051339 PMCID: PMC11270356 DOI: 10.3390/biotech13030024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2024] [Revised: 06/20/2024] [Accepted: 06/25/2024] [Indexed: 07/27/2024] Open
Abstract
Rutin, a flavonoid phytochemical compound, plays a vital role in human health. It is used in treating capillary fragility and has anti-Alzheimer, anti-inflammatory, and antioxidant effects. In this study, Ti-Mo-Ni-O nanotubes (NTs) were used, for the first time, in an unprecedented plant biotechnology application, wherein in vitro Philodendron shoots (Philodendron erubescens) known as "Imperial Red" were targeted for rutin accumulation. The antioxidant responses and the accumulation of rutin were evaluated in treated Philodendron erubescens (P. erubescens) shoots using 5.0 mg/L of Ti-Mo-Ni-O NTs. The total phenolic content and total flavonoid content were estimated, and an ABTS+ assay, FRAP assay, and iron metal chelation assay were performed. The application of Ti-Mo-Ni-O NTs enhanced the rutin content considerably from 0.02 mg/g to 2.96 mg/g for dry-weight shootlet extracts. Therefore, the use of Ti-Mo-Ni-O NTs is proposed to be a superior alternative to elevate the rutin content. The aim of the current study is to target P. erubescens shoots grown in vitro for the accumulation of rutin compounds using Ti-Mo-Ni-O NT powder, to determine the quantitative and qualitative accumulation of rutin via HPLC-DAD analysis, and to estimate the antioxidant activity of P. erubescens shoot extract. This study presents a novel methodology for utilizing nano-biotechnology in the synthesis of plant secondary metabolites.
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Affiliation(s)
- Hanan S. Ebrahim
- Department of Plant Biotechnology, Biotechnology Research Institute, National Research Centre (NRC), Cairo 12622, Egypt;
| | - Nourhan M. Deyab
- Energy Materials Laboratory (EML), School of Sciences and Engineering, The American University in Cairo, New Cairo City 11835, Egypt; (N.M.D.)
- Physical Chemistry Department, National Research Centre (NRC), Cairo 12622, Egypt
| | - Basamat S. Shaheen
- Energy Materials Laboratory (EML), School of Sciences and Engineering, The American University in Cairo, New Cairo City 11835, Egypt; (N.M.D.)
| | - Ahmed M. M. Gabr
- Department of Plant Biotechnology, Biotechnology Research Institute, National Research Centre (NRC), Cairo 12622, Egypt;
- Academy of Scientific Research and Technology, 101 Kasr El Ainy St. Kasr El Ainy, Cairo 11516, Egypt
| | - Nageh K. Allam
- Energy Materials Laboratory (EML), School of Sciences and Engineering, The American University in Cairo, New Cairo City 11835, Egypt; (N.M.D.)
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24
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Yang D, Wang B, Qu J. Construction and Function of Thiolate-Bridged Diiron N xH y Nitrogenase Model Complexes. Acc Chem Res 2024; 57:1761-1776. [PMID: 38861704 DOI: 10.1021/acs.accounts.4c00068] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/13/2024]
Abstract
ConspectusBiological nitrogen fixation mediated by nitrogenases has garnered significant research interest due to its critical importance to the development of efficient catalysts for mild ammonia synthesis. Although the active center of the most studied FeMo-nitrogenases has been determined to be a complicated [Fe7S9MoC] hetero-multinuclear metal-sulfur cluster known as the FeMo-cofactor, the exact binding site and reduction pathway of N2 remain a subject of debate. Over the past decades, the majority of studies have focused on mononuclear molybdenum or iron centers as potential reaction sites. In stark contrast, cooperative activation of N2 through bi- or multimetallic centers has been largely overlooked and underexplored, despite the renewed interest sparked by recent biochemical and computational studies. Consequently, constructing bioinspired bi- or multinuclear metallic model complexes presents an intriguing yet challenging prospect. In this Account, we detail our long-standing research on the design and synthesis of novel thiolate-bridged diiron complexes as nitrogenase models and their application to chemical simulations of potential biological N2 reduction pathways.Inspired by the structural and electronic features of the potential diiron active center in the belt region of the FeMo-cofactor, we have designed and synthesized a series of new thiolate-bridged diiron nitrogenase model complexes, wherein iron centers with +2 or +3 oxidation states are coordinated by Cp* as carbon-based donors and thiolate ligands as sulfur donors. Through the synergistic interaction between the two iron centers, unstable diazene (NH═NH) species can be trapped to generate the first example of a [Fe2S2]-type complex bearing a cis-μ-η1:η1-NH═NH subunit. Significantly, this species can not only catalyze the reductive N-N bond cleavage of hydrazine to ammonia but also trigger a stepwise reduction sequence NH═NH → [NH2-NH]- → [NH]2-(+NH3) → [NH2]- → NH3. Furthermore, an unprecedented thiolate-bridged diiron μ-nitride featuring a bent Fe-N-Fe moiety was successfully isolated and structurally characterized. Importantly, this diiron μ-nitride can undergo successive proton-coupled electron transfer processes to efficiently release ammonia in the presence of separate protons and electrons and can even be directly hydrogenated using H2 as a combination of protons and electrons for high-yield ammonia formation. Based on combined experimental and computational studies, we proposed two distinct reductive transformation sequences on the diiron centers, which involve a series of crucial NxHy intermediates. Moreover, we also achieved catalytic N2 reduction to silylamines with [Fe2S2]-type complexes by ligand modulation.Our bioinspired diiron cooperative scaffold may provide a suitable model for probing the potential N2 stepwise reduction pathways from the molecular level. Different from the traditional alternating and distal pathways dominated by mononuclear iron or molybdenum complexes, our proposed alternating transformation route based on the diiron centers may not involve the N2H4 intermediate, and the convergence point of the alternating and terminal pathways is imide, not amide. Our research strategy could inform the design and development of new types of bioinspired catalysts for mild and efficient nitrogen reduction in the future.
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Affiliation(s)
- Dawei Yang
- State Key Laboratory of Fine Chemicals, Frontier Science Center for Smart Materials, Dalian University of Technology, Dalian 116024, P. R. China
| | - Baomin Wang
- State Key Laboratory of Fine Chemicals, Frontier Science Center for Smart Materials, Dalian University of Technology, Dalian 116024, P. R. China
| | - Jingping Qu
- State Key Laboratory of Fine Chemicals, Frontier Science Center for Smart Materials, Dalian University of Technology, Dalian 116024, P. R. China
- State Key Laboratory of Bioreactor Engineering, Collaborative Innovation Centre for Biomanufacturing, Frontiers Science Center for Materiobiology and Dynamic Chemistry, East China University of Science and Technology, Shanghai 200237, P. R. China
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25
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He C, Chen Y, Hao Z, Wang L, Wang M, Cui X. Mechanocatalytic Synthesis of Ammonia by Titanium Dioxide with Bridge-Oxygen Vacancies: Investigating Mechanism from the Experimental and First-Principle Approach. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2024; 20:e2309500. [PMID: 38368265 DOI: 10.1002/smll.202309500] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/19/2023] [Revised: 11/10/2023] [Indexed: 02/19/2024]
Abstract
Mechanochemical ammonia (NH3) synthesis is an emerging mild approach derived from nitrogen (N2) gas and hydrogen (H) source. The gas-liquid phase mechanochemical process utilizes water (H2O), rather than conventional hydrogen (H2) gas, as H sources, thus avoiding carbon dioxide (CO2) emission during H2 production. However, ammonia yield is relatively low to meet practical demand due to huge energy barriers of N2 activation and H2O dissociation. Here, six transition metal oxides (TMO) such as titanium dioxide (TiO2), iron(III) oxide (Fe2O3), copper(II) oxide (CuO), niobium(V) oxide(Nb2O5), zinc oxide (ZnO), and copper(I) oxide (Cu2O) are investigated as catalysts in mechanochemical N2 fixation. Among them, TiO2 shows the best mechanocatalytic effect and the optimum reaction rate constant is 3.6-fold higher than the TMO-free process. The theoretical calculations show that N2 molecules prefer to side-on chemisorb on the mechano-induced bridge-oxygen vacancies in the (101) crystal plane of TiO2 catalyst, while H2O molecules can dissociate on the same sites more easily to provide free H atoms, enabling an alternative-way hydrogeneration process of activated N2 molecules to release NH3 eventually. This work highlights the cost-effective TiO2 mechanocatalyst for ammonia synthesis under mild conditions and proposes a defect-engineering-induced mechanocatalytic mechanism to promote N2 activation and H2O dissociation.
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Affiliation(s)
- Chengli He
- Department of Materials Science, Fudan University, Shanghai, 200433, P. R. China
| | - Yang Chen
- Department of Materials Science, Fudan University, Shanghai, 200433, P. R. China
- College of Chemistry and Materials Science, Shanghai Normal University, Shanghai, 200234, P. R. China
| | - Zixiang Hao
- Department of Materials Science, Fudan University, Shanghai, 200433, P. R. China
| | - Linrui Wang
- Department of Materials Science, Fudan University, Shanghai, 200433, P. R. China
| | - Mingyan Wang
- School of Environment and Chemical Engineering, Jiangsu Ocean University, Lianyungang, 222005, P. R. China
| | - Xiaoli Cui
- Department of Materials Science, Fudan University, Shanghai, 200433, P. R. China
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26
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M Meirovich M, Bachar O, Shemesh M, Cohen Y, Popik A, Yehezkeli O. Light-driven, bias-free nitrogenase-based bioelectrochemical cell for ammonia generation. Biosens Bioelectron 2024; 255:116254. [PMID: 38569252 DOI: 10.1016/j.bios.2024.116254] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2024] [Revised: 03/12/2024] [Accepted: 03/25/2024] [Indexed: 04/05/2024]
Abstract
Nitrogen fixation is a key process that sustains life on Earth. Nitrogenase is the sole enzyme capable of fixing nitrogen under ambient conditions. Extensive research efforts have been dedicated to elucidating the enzyme mechanism and its artificial activation through high applied voltage, photochemistry, or strong reducing agents. Harnessing light irradiation to minimize the required external bias can lower the process's high energy investment. Herein, we present the development of photo-bioelectrochemical cells (PBECs) utilizing BiVO4/CoP or CdS/NiO photoanodes for nitrogenase activation toward N2 fixation. The constructed PBEC based on BiVO4/CoP photoanode requires minimal external bias (200 mV) and suppresses O2 generation that allows efficient activation of the nitrogenase enzyme, using glucose as an electron donor. In a second developed PBEC configuration, CdS/NiO photoanode was used, enabling bias-free activation of the nitrogenase-based cathode to produce 100 μM of ammonia at a faradaic efficiency (FE) of 12%. The ammonia production was determined by a commonly used fluorescence probe and further validated using 1H-NMR spectroscopy. The presented PBECs lay the foundation for biotic-abiotic systems to directly activate enzymes toward value-added chemicals by light-driven reactions.
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Affiliation(s)
- Matan M Meirovich
- Faculty of Biotechnology and Food Engineering, Technion - Israel Institute of Technology, 3200003, Haifa, Israel
| | - Oren Bachar
- Faculty of Biotechnology and Food Engineering, Technion - Israel Institute of Technology, 3200003, Haifa, Israel
| | - Mor Shemesh
- Faculty of Biotechnology and Food Engineering, Technion - Israel Institute of Technology, 3200003, Haifa, Israel
| | - Yifat Cohen
- Faculty of Biotechnology and Food Engineering, Technion - Israel Institute of Technology, 3200003, Haifa, Israel
| | - Alice Popik
- Faculty of Biotechnology and Food Engineering, Technion - Israel Institute of Technology, 3200003, Haifa, Israel
| | - Omer Yehezkeli
- Faculty of Biotechnology and Food Engineering, Technion - Israel Institute of Technology, 3200003, Haifa, Israel; Russell Berrie Nanotechnology Institute, Technion - Israel Institute of Technology, 3200003, Haifa, Israel; The Nancy and Stephen Grand Technion Energy Program, Technion - Israel Institute of Technology, 3200003, Haifa, Israel.
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27
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Evans MJ, Jones C. Low oxidation state and hydrido group 2 complexes: synthesis and applications in the activation of gaseous substrates. Chem Soc Rev 2024; 53:5054-5082. [PMID: 38595211 DOI: 10.1039/d4cs00097h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/11/2024]
Abstract
Numerous industrial processes utilise gaseous chemical feedstocks to produce useful chemical products. Atmospheric and other small molecule gases, including anthropogenic waste products (e.g. carbon dioxide), can be viewed as sustainable building blocks to access value-added chemical commodities and materials. While transition metal complexes have been well documented in the reduction and transformation of these substrates, molecular complexes of the terrestrially abundant alkaline earth metals have also demonstrated promise with remarkable reactivity reported towards an array of industrially relevant gases over the past two decades. This review covers low oxidation state and hydrido group 2 complexes and their role in the reduction and transformation of a selection of important gaseous substrates towards value-added chemical products.
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Affiliation(s)
- Matthew J Evans
- School of Chemistry, Monash University, PO Box 23, Melbourne, Victoria, 3800, Australia.
| | - Cameron Jones
- School of Chemistry, Monash University, PO Box 23, Melbourne, Victoria, 3800, Australia.
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28
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Liu Q, Wang P, Wang Y, Zou J, Leng X, Deng L. Iron(I) Complex Bearing an Open-Shell Diazenido Ligand. J Am Chem Soc 2024; 146:13629-13640. [PMID: 38706251 DOI: 10.1021/jacs.4c03483] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/07/2024]
Abstract
Low-valent transition-metal diazenido species are important intermediates in transition-metal-mediated dinitrogen reduction reactions. Isolable complexes of the type unanimously feature closed-shell diazenido ligands. Those bearing open-shell diazenido ligands have remained elusive. Herein, we report the synthesis, characterization, and reactivity of a d7 iron(I) complex featuring an open-shell silyldiazenido ligand, [(ICy)Fe(NNSiiPr3)(η2:η2-dvtms)] (1, ICy = 1,3-dicyclohexylimidazole-2-ylidene, dvtms = divinyltetramethyldisiloxane). Complex 1 is prepared in good yield by silylation of the iron(-I)-N2 complex [K(18-crown-6)][(ICy)Fe(N2)(η2:η2-dvtms)] with iPr3SiOTf and has been fully characterized by various spectroscopic methods. Theoretical studies, in combination with characterization data, established an S = 1/2 ground spin-state for 1 that can best be described as a quartet iron(I) center featuring an antiferromagnetically coupled triplet silyldiazenido ligand. The diazenido and alkene ligands in 1 are labile, as indicated by the facile disproportionation reaction of 1 at ambient temperature to transform into the iron(II) bis(diazenido) species [(ICy)(NNSiiPr3)2Fe(dvtms)Fe(NNSiiPr3)2(ICy)] (2) and the iron(0) species [(ICy)Fe(η2:η2-dvtms)] and also the alkene-exchange reaction of 1 with PhCH═CHBC8H14 to form [(ICy)Fe(NNSiiPr3)(η2-trans-PhCH═CHBC8H14)] (3). Complex 1 is light-sensitive. Upon photolysis, it undergoes a SiiPr3 radical-transfer reaction to yield [(ICy)Fe(σ:η2-MeCHSiMe2OSiMe2CH═CHSiiPr3)] (4) and N2. The reactions of 1 with the trityl radical and organic bromides yield iron(II) complexes, which indicates its reducing nature. Moreover, 1 is a weak hydrogen-atom abstractor, as indicated by its inertness toward HSi(SiMe3)3 and cyclohexa-1,4-diene and the low calculated N-H bond dissociation energy (48 kcal/mol) of its corresponding iron(II) iso-hydrazenido species.
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Affiliation(s)
- Qing Liu
- State Key Laboratory of Organometallic Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032, P. R. China
- School of Chemistry and Materials Science, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, 1 Sub-lane Xiangshan, Hangzhou 310024, P. R. China
| | - Peng Wang
- State Key Laboratory of Organometallic Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032, P. R. China
| | - Yujian Wang
- State Key Laboratory of Organometallic Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032, P. R. China
| | - Junjie Zou
- State Key Laboratory of Organometallic Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032, P. R. China
| | - Xuebing Leng
- State Key Laboratory of Organometallic Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032, P. R. China
| | - Liang Deng
- State Key Laboratory of Organometallic Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032, P. R. China
- School of Chemistry and Materials Science, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, 1 Sub-lane Xiangshan, Hangzhou 310024, P. R. China
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29
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Heidinger L, Perez K, Spatzal T, Einsle O, Weber S, Rees DC, Schleicher E. Analysis of early intermediate states of the nitrogenase reaction by regularization of EPR spectra. Nat Commun 2024; 15:4041. [PMID: 38740794 DOI: 10.1038/s41467-024-48271-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2023] [Accepted: 04/25/2024] [Indexed: 05/16/2024] Open
Abstract
Due to the complexity of the catalytic FeMo cofactor site in nitrogenases that mediates the reduction of molecular nitrogen to ammonium, mechanistic details of this reaction remain under debate. In this study, selenium- and sulfur-incorporated FeMo cofactors of the catalytic MoFe protein component from Azotobacter vinelandii are prepared under turnover conditions and investigated by using different EPR methods. Complex signal patterns are observed in the continuous wave EPR spectra of selenium-incorporated samples, which are analyzed by Tikhonov regularization, a method that has not yet been applied to high spin systems of transition metal cofactors, and by an already established grid-of-error approach. Both methods yield similar probability distributions that reveal the presence of at least four other species with different electronic structures in addition to the ground state E0. Two of these species were preliminary assigned to hydrogenated E2 states. In addition, advanced pulsed-EPR experiments are utilized to verify the incorporation of sulfur and selenium into the FeMo cofactor, and to assign hyperfine couplings of 33S and 77Se that directly couple to the FeMo cluster. With this analysis, we report selenium incorporation under turnover conditions as a straightforward approach to stabilize and analyze early intermediate states of the FeMo cofactor.
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Affiliation(s)
- Lorenz Heidinger
- Institut für Physikalische Chemie, Albert-Ludwigs-Universität Freiburg, Freiburg, Germany
- Institut für Biochemie, Albert-Ludwigs-Universität Freiburg, Freiburg, Germany
| | - Kathryn Perez
- Howard Hughes Medical Institute (HHMI), California Institute of Technology, Division of Chemistry and Chemical Engineering, Pasadena, CA, USA
| | - Thomas Spatzal
- Howard Hughes Medical Institute (HHMI), California Institute of Technology, Division of Chemistry and Chemical Engineering, Pasadena, CA, USA
| | - Oliver Einsle
- Institut für Biochemie, Albert-Ludwigs-Universität Freiburg, Freiburg, Germany
| | - Stefan Weber
- Institut für Physikalische Chemie, Albert-Ludwigs-Universität Freiburg, Freiburg, Germany
| | - Douglas C Rees
- Howard Hughes Medical Institute (HHMI), California Institute of Technology, Division of Chemistry and Chemical Engineering, Pasadena, CA, USA.
| | - Erik Schleicher
- Institut für Physikalische Chemie, Albert-Ludwigs-Universität Freiburg, Freiburg, Germany.
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30
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Thangudu S, Wu CH, Hwang KC. Photocatalytic Dinitrogen Reduction to Ammonia over Biomimetic FeMoS x Nanosheets. ACS OMEGA 2024; 9:20629-20635. [PMID: 38737058 PMCID: PMC11080007 DOI: 10.1021/acsomega.4c03076] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/31/2024] [Revised: 04/07/2024] [Accepted: 04/12/2024] [Indexed: 05/14/2024]
Abstract
Reduction of atmospheric dinitrogen (N2) to ammonia (NH3) using water and sunlight in the absence of sacrificial reducing reagents at room temperature is very challenging and is considered an eco-friendly approach to meet the rapidly increasing demand for nitrogen storage, fertilizers, and a sustainable society. Currently, ammonia production via the energy-intensive Haber-Bosch process causes ∼350 million tons of carbon dioxide (CO2) emission per year. Interestingly, natural N2 fixation by the nitrogenase enzyme occurs under ambient conditions. Unfortunately, N2 fixation on biomimetic catalysts has rarely been studied. To mimic biological nitrogen fixation, herein, we synthesized the novel iron molybdenum sulfide (FeMoSx) micro-/nanosheets via a simple hydrothermal approach for the first time. Further, we successfully demonstrated the photochemical conversion of N2 to NH3 over a biomimetic FeMoSx photocatalyst. The estimated yield is around 99.79 ± 6.0 μmol/h/g photocatalyst with a quantum efficiency of ∼0.028% at 532 nm visible-light wavelength. Besides, we also systematically studied the influence of key factors to further improve NH3 yields. Overall, this study paves a new pathway to fabricate carbon-free, photochemical N2 fixation materials for future applications.
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Affiliation(s)
- Suresh Thangudu
- Department
of Chemistry, National Tsing
Hua University, Hsinchu 30013, Taiwan R.O.C
| | - Chein Hou Wu
- Department
of Biomedical Engineering and Environmental Science, National Tsing Hua University, Hsinchu 30013, Taiwan R.O.C
| | - Kuo Chu Hwang
- Department
of Chemistry, National Tsing
Hua University, Hsinchu 30013, Taiwan R.O.C
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31
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Blais MA, Vincent WF, Vigneron A, Labarre A, Matveev A, Coelho LF, Lovejoy C. Diverse winter communities and biogeochemical cycling potential in the under-ice microbial plankton of a subarctic river-to-sea continuum. Microbiol Spectr 2024; 12:e0416023. [PMID: 38511950 PMCID: PMC11210273 DOI: 10.1128/spectrum.04160-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2023] [Accepted: 03/05/2024] [Indexed: 03/22/2024] Open
Abstract
Winter conditions greatly alter the limnological properties of lotic ecosystems and the availability of nutrients, carbon, and energy resources for microbial processes. However, the composition and metabolic capabilities of winter microbial communities are still largely uncharacterized. Here, we sampled the winter under-ice microbiome of the Great Whale River (Nunavik, Canada) and its discharge plume into Hudson Bay. We used a combination of 16S and 18S rRNA gene amplicon analysis and metagenomic sequencing to evaluate the size-fractionated composition and functional potential of the microbial plankton. These under-ice communities were diverse in taxonomic composition and metabolically versatile in terms of energy and carbon acquisition, including the capacity to carry out phototrophic processes and degrade aromatic organic matter. Limnological properties, community composition, and metabolic potential differed between shallow and deeper sites in the river, and between fresh and brackish water in the vertical profile of the plume. Community composition also varied by size fraction, with a greater richness of prokaryotes in the larger size fraction (>3 µm) and of microbial eukaryotes in the smaller size fraction (0.22-3 µm). The freshwater communities included cosmopolitan bacterial genera that were previously detected in the summer, indicating their persistence over time in a wide range of physico-chemical conditions. These observations imply that the microbial communities of subarctic rivers and their associated discharge plumes retain a broad taxonomic and functional diversity throughout the year and that microbial processing of complex terrestrial materials persists beneath the ice during the long winter season. IMPORTANCE Microbiomes vary over multiple timescales, with short- and long-term changes in the physico-chemical environment. However, there is a scarcity of data and understanding about the structure and functioning of aquatic ecosystems during winter relative to summer. This is especially the case for seasonally ice-covered rivers, limiting our understanding of these ecosystems that are common throughout the boreal, subpolar, and polar regions. Here, we examined the winter under-ice microbiome of a Canadian subarctic river and its entry to the sea to characterize the taxonomic and functional features of the microbial community. We found substantial diversity in both composition and functional capabilities, including the capacity to degrade complex terrestrial compounds, despite the constraints imposed by a prolonged seasonal ice-cover and near-freezing water temperatures. This study indicates the ecological complexity and importance of winter microbiomes in ice-covered rivers and the coastal marine environment that they discharge into.
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Affiliation(s)
- Marie-Amélie Blais
- Département de Biologie, Université Laval, Quebec City, Quebec, Canada
- Institut de Biologie Intégrative et des Systèmes (IBIS), Université Laval, Quebec City, Quebec, Canada
- Centre for Northern Studies (CEN), Université Laval, Quebec City, Quebec, Canada
- Takuvik Joint International Laboratory, Université Laval, Quebec City, Quebec, Canada
| | - Warwick F. Vincent
- Département de Biologie, Université Laval, Quebec City, Quebec, Canada
- Institut de Biologie Intégrative et des Systèmes (IBIS), Université Laval, Quebec City, Quebec, Canada
- Centre for Northern Studies (CEN), Université Laval, Quebec City, Quebec, Canada
- Takuvik Joint International Laboratory, Université Laval, Quebec City, Quebec, Canada
| | - Adrien Vigneron
- Département de Biologie, Université Laval, Quebec City, Quebec, Canada
- Institut de Biologie Intégrative et des Systèmes (IBIS), Université Laval, Quebec City, Quebec, Canada
- Centre for Northern Studies (CEN), Université Laval, Quebec City, Quebec, Canada
- Takuvik Joint International Laboratory, Université Laval, Quebec City, Quebec, Canada
| | - Aurélie Labarre
- Département de Biologie, Université Laval, Quebec City, Quebec, Canada
- Institut de Biologie Intégrative et des Systèmes (IBIS), Université Laval, Quebec City, Quebec, Canada
- Takuvik Joint International Laboratory, Université Laval, Quebec City, Quebec, Canada
- Québec-Océan, Université Laval, Quebec City, Quebec, Canada
| | - Alex Matveev
- Département de Biologie, Université Laval, Quebec City, Quebec, Canada
- Centre for Northern Studies (CEN), Université Laval, Quebec City, Quebec, Canada
- Takuvik Joint International Laboratory, Université Laval, Quebec City, Quebec, Canada
| | - Lígia Fonseca Coelho
- Centro de Química Estrutural, Departamento de Engenharia Química, Instituto Superior Técnico, Universidade de Lisboa, Lisboa, Portugal
- Institute for Bioengineering and Biosciences, Instituto Superior Técnico, Universidade de Lisboa, Lisboa, Portugal
- Associate Laboratory i4HB—Institute for Health and Bioeconomy at Instituto Superior Técnico, Universidade de Lisboa, Lisboa, Portugal
| | - Connie Lovejoy
- Département de Biologie, Université Laval, Quebec City, Quebec, Canada
- Institut de Biologie Intégrative et des Systèmes (IBIS), Université Laval, Quebec City, Quebec, Canada
- Takuvik Joint International Laboratory, Université Laval, Quebec City, Quebec, Canada
- Québec-Océan, Université Laval, Quebec City, Quebec, Canada
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32
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Kfoury J, Oláh J. Role of Lewis acid/base anchor atoms in catalyst regeneration: a comprehensive study on biomimetic EP 3Fe nitrogenases. Phys Chem Chem Phys 2024; 26:12520-12529. [PMID: 38605679 DOI: 10.1039/d4cp00483c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/13/2024]
Abstract
In the quest for sustainable ammonia synthesis routes, biomimetic complexes have been intensively studied. Here we focus on the Peter's group Fe-nitrogenase catalyst with EPPP scorpionate ligands, and explore the effect of anchor atom selection (B, Al, Ga, N and P) and the impact of chloro substitution on the phenyl rings on nitrogen fixation. The reaction profiles of complexes with Lewis basic anchor atoms exhibited energy-demanding reduction steps, with more exergonic protonation steps compared to the smoother reaction profiles observed for catalysts with Lewis acid anchor atoms, also implying that catalyst regeneration is especially challenging for catalysts with Lewis basic anchor atoms. The binding affinities of N2 and H2 to the complexes suggest that the autocatalytic hydrogen evolution reaction (HER), which ultimately leads to consumption of reactants and catalyst deactivation, is likely to become more prevalent for heavier anchor atoms and be more significant for Lewis basic anchor atom complexes. Out of the studied complexes, boron showed the smoothest reaction profile and the smallest affinity for H2, which supports its superiour role as an anchor atom in accordance with experimental data.
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Affiliation(s)
- Joseph Kfoury
- Department of Inorganic and Analytical Chemistry, Budapest University of Technology and Economics, Műegyetem rkp. 3, H-1111 Budapest, Hungary.
| | - Julianna Oláh
- Department of Inorganic and Analytical Chemistry, Budapest University of Technology and Economics, Műegyetem rkp. 3, H-1111 Budapest, Hungary.
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33
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Fasano A, Fourmond V, Léger C. Outer-sphere effects on the O 2 sensitivity, catalytic bias and catalytic reversibility of hydrogenases. Chem Sci 2024; 15:5418-5433. [PMID: 38638217 PMCID: PMC11023054 DOI: 10.1039/d4sc00691g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2024] [Accepted: 03/15/2024] [Indexed: 04/20/2024] Open
Abstract
The comparison of homologous metalloenzymes, in which the same inorganic active site is surrounded by a variable protein matrix, has demonstrated that residues that are remote from the active site may have a great influence on catalytic properties. In this review, we summarise recent findings on the diverse molecular mechanisms by which the protein matrix may define the oxygen tolerance, catalytic directionality and catalytic reversibility of hydrogenases, enzymes that catalyse the oxidation and evolution of H2. These mechanisms involve residues in the second coordination sphere of the active site metal ion, more distant residues affecting protein flexibility through their side chains, residues lining the gas channel and even accessory subunits. Such long-distance effects, which contribute to making enzymes efficient, robust and different from one another, are a source of wonder for biochemists and a challenge for synthetic bioinorganic chemists.
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Affiliation(s)
- Andrea Fasano
- Laboratoire de Bioénergétique et Ingénierie des Protéines, CNRS, Aix Marseille Université, UMR 7281 Marseille France
| | - Vincent Fourmond
- Laboratoire de Bioénergétique et Ingénierie des Protéines, CNRS, Aix Marseille Université, UMR 7281 Marseille France
| | - Christophe Léger
- Laboratoire de Bioénergétique et Ingénierie des Protéines, CNRS, Aix Marseille Université, UMR 7281 Marseille France
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34
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Zeng J, You F, Zhu J. Screening seven-electron boron-centered radicals for dinitrogen activation. J Comput Chem 2024; 45:648-654. [PMID: 38073508 DOI: 10.1002/jcc.27281] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2023] [Revised: 11/23/2023] [Accepted: 11/27/2023] [Indexed: 03/02/2024]
Abstract
The activation of dinitrogen is significant as nitrogen-containing compounds play an important role in industries. However, the inert NN triple bond caused by its large HOMO-LUMO gap (10.8 eV) and high bond dissociation energy (945 kJ mol-1 ) renders its activation under mild conditions particularly challenging. Recent progress shows that a few main group species can mimic transition metal complexes to activate dinitrogen. Here, we demonstrate that a series of seven-electron (7e) boron-centered radical can be used to activate N2 via density functional theory calculations. It is found that boron-centered radicals containing amine ligand perform best on the thermodynamics of dinitrogen activation. In addition, when electron-donating groups are introduced at the boron atom, these radicals can be used to activate N2 with low reaction barriers. Further analysis suggests that the electron transfer from the boron atom to the π* orbitals of dinitrogen is essential for its activation. Our findings suggest great potential of 7e boron radicals in the field of dinitrogen activation.
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Affiliation(s)
- Jie Zeng
- School of Science and Engineering, The Chinese University of Hong Kong, Shenzhen, China
- Pharmaceutical Research Institute, Wuhan Institute of Technology, Wuhan, China
| | - Feiying You
- State Key Laboratory of Physical Chemistry of Solid Surfaces and Collaborative Innovation Center of Chemistry for Energy Materials (iChEM), Fujian Provincial Key Laboratory of Theoretical and Computational Chemistry and Department of Chemistry, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, China
| | - Jun Zhu
- School of Science and Engineering, The Chinese University of Hong Kong, Shenzhen, China
- State Key Laboratory of Physical Chemistry of Solid Surfaces and Collaborative Innovation Center of Chemistry for Energy Materials (iChEM), Fujian Provincial Key Laboratory of Theoretical and Computational Chemistry and Department of Chemistry, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, China
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35
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Rang M, Heinz M, Halkić A, Weber M, Dewhurst RD, Rempel A, Härterich M, Holthausen MC, Braunschweig H. Trapping of a Terminal Intermediate in the Boron-Mediated Dinitrogen Reduction: Mono-, Tri-, and Tetrafunctionalized Hydrazines in Two Steps from N 2. J Am Chem Soc 2024. [PMID: 38598273 DOI: 10.1021/jacs.4c01818] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/11/2024]
Abstract
The addition of chlorotrimethylsilane to a boron-mediated, transition-metal-free N2 activation reaction leads to the isolation of multiple potassium boryl(silyl)hydrazido species, likely trapping products of a terminal dinitrogen complex of boron. One of these silylated N2 species can be protonated or methylated, providing access to mono- to tetrafunctionalized hydrazines in two steps from N2 and in the absence of transition metals.
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Affiliation(s)
- Maximilian Rang
- Institute for Inorganic Chemistry, Julius-Maximilians-Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
- Institute for Sustainable Chemistry & Catalysis with Boron, Julius-Maximilians-Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Myron Heinz
- Institute for Inorganic and Analytical Chemistry, Goethe-Universität Frankfurt am Main, Max-von-Laue-Straße 7, 60438 Frankfurt am Main, Germany
| | - Anel Halkić
- Institute for Inorganic Chemistry, Julius-Maximilians-Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
- Institute for Sustainable Chemistry & Catalysis with Boron, Julius-Maximilians-Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Marco Weber
- Institute for Inorganic Chemistry, Julius-Maximilians-Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
- Institute for Sustainable Chemistry & Catalysis with Boron, Julius-Maximilians-Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Rian D Dewhurst
- Institute for Inorganic Chemistry, Julius-Maximilians-Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
- Institute for Sustainable Chemistry & Catalysis with Boron, Julius-Maximilians-Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Anna Rempel
- Institute for Inorganic Chemistry, Julius-Maximilians-Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
- Institute for Sustainable Chemistry & Catalysis with Boron, Julius-Maximilians-Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Marcel Härterich
- Institute for Inorganic Chemistry, Julius-Maximilians-Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
- Institute for Sustainable Chemistry & Catalysis with Boron, Julius-Maximilians-Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Max C Holthausen
- Institute for Inorganic and Analytical Chemistry, Goethe-Universität Frankfurt am Main, Max-von-Laue-Straße 7, 60438 Frankfurt am Main, Germany
| | - Holger Braunschweig
- Institute for Inorganic Chemistry, Julius-Maximilians-Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
- Institute for Sustainable Chemistry & Catalysis with Boron, Julius-Maximilians-Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
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36
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Cuevas-Zuviría B, Garcia AK, Rivier AJ, Rucker HR, Carruthers BM, Kaçar B. Emergence of an Orphan Nitrogenase Protein Following Atmospheric Oxygenation. Mol Biol Evol 2024; 41:msae067. [PMID: 38526235 PMCID: PMC11018506 DOI: 10.1093/molbev/msae067] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2023] [Revised: 03/06/2024] [Accepted: 03/19/2024] [Indexed: 03/26/2024] Open
Abstract
Molecular innovations within key metabolisms can have profound impacts on element cycling and ecological distribution. Yet, much of the molecular foundations of early evolved enzymes and metabolisms are unknown. Here, we bring one such mystery to relief by probing the birth and evolution of the G-subunit protein, an integral component of certain members of the nitrogenase family, the only enzymes capable of biological nitrogen fixation. The G-subunit is a Paleoproterozoic-age orphan protein that appears more than 1 billion years after the origin of nitrogenases. We show that the G-subunit arose with novel nitrogenase metal dependence and the ecological expansion of nitrogen-fixing microbes following the transition in environmental metal availabilities and atmospheric oxygenation that began ∼2.5 billion years ago. We identify molecular features that suggest early G-subunit proteins mediated cofactor or protein interactions required for novel metal dependency, priming ancient nitrogenases and their hosts to exploit these newly diversified geochemical environments. We further examined the degree of functional specialization in G-subunit evolution with extant and ancestral homologs using laboratory reconstruction experiments. Our results indicate that permanent recruitment of the orphan protein depended on the prior establishment of conserved molecular features and showcase how contingent evolutionary novelties might shape ecologically important microbial innovations.
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Affiliation(s)
| | - Amanda K Garcia
- Department of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA
| | - Alex J Rivier
- Department of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA
| | - Holly R Rucker
- Department of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA
| | - Brooke M Carruthers
- Department of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA
| | - Betül Kaçar
- Department of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA
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37
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Clinger A, Yang ZY, Pellows LM, King P, Mus F, Peters JW, Dukovic G, Seefeldt LC. Hole-scavenging in photo-driven N 2 reduction catalyzed by a CdS-nitrogenase MoFe protein biohybrid system. J Inorg Biochem 2024; 253:112484. [PMID: 38219407 DOI: 10.1016/j.jinorgbio.2024.112484] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2023] [Revised: 01/05/2024] [Accepted: 01/08/2024] [Indexed: 01/16/2024]
Abstract
The light-driven reduction of dinitrogen (N2) to ammonia (NH3) catalyzed by a cadmium sulfide (CdS) nanocrystal‑nitrogenase MoFe protein biohybrid is dependent on a range of different factors, including an appropriate hole-scavenging sacrificial electron donor (SED). Here, the impact of different SEDs on the overall rate of N2 reduction catalyzed by a CdS quantum dot (QD)-MoFe protein system was determined. The selection of SED was guided by several goals: (i) molecules with standard reduction potentials sufficient to reduce the oxidized CdS QD, (ii) molecules that do not absorb the excitation wavelength of the CdS QD, and (iii) molecules that could be readily reduced by sustainable processes. Earlier studies utilized buffer molecules or ascorbic acid as the SED. The effectiveness of ascorbic acid as SED was compared to dithionite (DT), triethanolamine (TEOA), and hydroquinone (HQ) across a range of concentrations in supporting N2 reduction to NH3 in a CdS QD-MoFe protein photocatalytic system. It was found that TEOA supported N2 reduction rates comparable to those observed for dithionite and ascorbic acid. HQ was found to support significantly higher rates of N2 reduction compared to the other SEDs at a concentration of 50 mM. A comparison of the rates of N2 reduction by the biohybrid complex to the standard reduction potential (Eo) of the SEDs reveals that Eo is not the only factor impacting the efficiency of hole-scavenging. These findings reveal the importance of the SED properties for improving the efficiency of hole-scavenging in the light-driven N2 reduction reaction catalyzed by a CdS QD-MoFe protein hybrid.
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Affiliation(s)
- Andrew Clinger
- Department of Chemistry and Biochemistry, Utah State University, Logan, UT 84322, United States of America
| | - Zhi-Yong Yang
- Department of Chemistry and Biochemistry, Utah State University, Logan, UT 84322, United States of America
| | - Lauren M Pellows
- Department of Chemistry, University of Colorado Boulder, Boulder, CO 80309, United States of America
| | - Paul King
- Biosciences Center, National Renewable Energy Laboratory, Golden, CO 80401, United States of America
| | - Florence Mus
- Department of Chemistry and Biochemistry, University of Oklahoma, Norman, OK 73019, United States of America
| | - John W Peters
- Department of Chemistry and Biochemistry, University of Oklahoma, Norman, OK 73019, United States of America
| | - Gordana Dukovic
- Department of Chemistry, University of Colorado Boulder, Boulder, CO 80309, United States of America; Materials Science and Engineering, University of Colorado Boulder, Boulder, CO 80303, United States of America; Renewable and Sustainable Energy Institute (RASEI), University of Colorado Boulder, Boulder, CO 80303, United States of America
| | - Lance C Seefeldt
- Department of Chemistry and Biochemistry, Utah State University, Logan, UT 84322, United States of America.
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38
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Eberle L, Ballmann J. Synthesis of Collidine from Dinitrogen via a Tungsten Nitride. J Am Chem Soc 2024; 146:7979-7984. [PMID: 38489245 DOI: 10.1021/jacs.4c02226] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/17/2024]
Abstract
The synthesis of pyridines from dinitrogen in homogeneous solution is known to be challenging considering that an N2 cleavage step needs to be combined with two N-C coupling steps. Herein, a tungsten complex bearing a tailor-made 2,2'-(tBu2As)2-substituted tolane ligand scaffold was shown to split N2 to afford the corresponding tungsten nitride, which is not the case for the corresponding (iPr2As)2-substituted derivative. The former nitride was then reacted with 2,4,6-trimethylpyrylium triflate, which led to the formation of a tungsten oxo complex, along with collidine. Over the course of this reaction, the O atom of the pyrylium starting material was replaced with an N atom via a hitherto unprecedented skeletal editing process.
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Affiliation(s)
- Lukas Eberle
- Anorganisch-Chemisches Institut, Universität Heidelberg, Im Neuenheimer Feld 276, D-69120 Heidelberg Germany
| | - Joachim Ballmann
- Anorganisch-Chemisches Institut, Universität Heidelberg, Im Neuenheimer Feld 276, D-69120 Heidelberg Germany
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39
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Petrovskii SK, Grachova EV, Monakhov KY. Bioorthogonal chemistry of polyoxometalates - challenges and prospects. Chem Sci 2024; 15:4202-4221. [PMID: 38516091 PMCID: PMC10952089 DOI: 10.1039/d3sc06284h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2023] [Accepted: 02/19/2024] [Indexed: 03/23/2024] Open
Abstract
Bioorthogonal chemistry has enabled scientists to carry out controlled chemical processes in high yields in vivo while minimizing hazardous effects. Its extension to the field of polyoxometalates (POMs) could open up new possibilities and new applications in molecular electronics, sensing and catalysis, including inside living cells. However, this comes with many challenges that need to be addressed to effectively implement and exploit bioorthogonal reactions in the chemistry of POMs. In particular, how to protect POMs from the biological environment but make their reactivity selective towards specific bioorthogonal tags (and thereby reduce their toxicity), as well as which bioorthogonal chemistry protocols are suitable for POMs and how reactions can be carried out are questions that we are exploring herein. This perspective conceptualizes and discusses advances in the supramolecular chemistry of POMs, their click chemistry, and POM-based surface engineering to develop innovative bioorthogonal approaches tailored to POMs and to improve POM biological tolerance.
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Affiliation(s)
| | - Elena V Grachova
- Institute of Chemistry, St Petersburg University Universitetskii pr. 26 St. Petersburg 198504 Russia
| | - Kirill Yu Monakhov
- Leibniz Institute of Surface Engineering (IOM) Permoserstr. 15 Leipzig 04318 Germany
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40
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Russell SJ, Garcia AK, Kaçar B. A CRISPR interference system for engineering biological nitrogen fixation. mSystems 2024; 9:e0015524. [PMID: 38376168 PMCID: PMC10949490 DOI: 10.1128/msystems.00155-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2024] [Accepted: 01/31/2024] [Indexed: 02/21/2024] Open
Abstract
A grand challenge for the next century is in facing a changing climate through bioengineering solutions. Biological nitrogen fixation, the globally consequential, nitrogenase-catalyzed reduction of atmospheric nitrogen to bioavailable ammonia, is a vital area of focus. Nitrogen fixation engineering relies upon extensive understanding of underlying genetics in microbial models, including the broadly utilized gammaproteobacterium, Azotobacter vinelandii (A. vinelandii). Here, we report the first CRISPR interference (CRISPRi) system for targeted gene silencing in A. vinelandii that integrates genomically via site-specific transposon insertion. We demonstrate that CRISPRi can repress transcription of an essential nitrogen fixation gene by ~60%. Further, we show that nitrogenase genes are suitably expressed from the transposon insertion site, indicating that CRISPRi and engineered nitrogen fixation genes can be co-integrated for combinatorial studies of gene expression and engineering. Our established CRISPRi system fills an important gap for engineering microbial nitrogen fixation for desired purposes.IMPORTANCEAll life on Earth requires nitrogen to survive. About 78% of the atmosphere alone is nitrogen, yet humans cannot use it directly. Instead, we obtain the nitrogen we need for our survival through the food we eat. For more than 100 years, a substantial portion of agricultural productivity has relied on industrial methods for nitrogen fertilizer synthesis, which consumes significant amounts of nonrenewable energy resources and exacerbates environmental degradation and human-induced climate change. Promising alternatives to these industrial methods rely on engineering the only biological pathway for generating bioaccessible nitrogen: microbial nitrogen fixation. Bioengineering strategies require an extensive understanding of underlying genetics in nitrogen-fixing microbes, but genetic tools for this critical goal remain lacking. The CRISPRi gene silencing system that we report, developed in the broadly utilized nitrogen-fixing bacterial model, Azotobacter vinelandii, is an important step toward elucidating the complexity of nitrogen fixation genetics and enabling their manipulation.
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Affiliation(s)
- Steven J. Russell
- Department of Bacteriology, University of Wisconsin-Madison, Madison, Wisconsin, USA
| | - Amanda K. Garcia
- Department of Bacteriology, University of Wisconsin-Madison, Madison, Wisconsin, USA
| | - Betül Kaçar
- Department of Bacteriology, University of Wisconsin-Madison, Madison, Wisconsin, USA
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41
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Ribeiro IDA, Paes JA, Wendisch VF, Ferreira HB, Passaglia LMP. Proteome profiling of Paenibacillus sonchi genomovar Riograndensis SBR5 T under conventional and alternative nitrogen fixation. J Proteomics 2024; 294:105061. [PMID: 38154550 DOI: 10.1016/j.jprot.2023.105061] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2023] [Revised: 12/13/2023] [Accepted: 12/14/2023] [Indexed: 12/30/2023]
Abstract
Paenibacillus sonchi SBR5T is a Gram-positive, endospore-forming facultative aerobic diazotrophic bacterium that can fix nitrogen via an alternative Fe-only nitrogenase (AnfHDGK). In several bacteria, this alternative system is expressed under molybdenum (Mo)-limiting conditions when the conventional Mo-dependent nitrogenase (NifHDK) production is impaired. The regulatory mechanisms, metabolic processes, and cellular functions of N2 fixation by alternative and/or conventional systems are poorly understood in the Paenibacillus genus. We conducted a comparative proteomic profiling study of P. sonchi SBR5T grown under N2-fixing conditions with and without Mo supply through an LC-MS/MS and label-free quantification analysis to address this gap. Protein abundances revealed overrepresented processes related to anaerobiosis growth adaption, Fe-S cluster biosynthesis, ammonia assimilation, electron transfer, and sporulation under N2-fixing conditions compared to non-fixing control. Under Mo limitation, the Fe-only nitrogenase components were overrepresented together with the Mo-transporter system, while the dinitrogenase component (NifDK) of Mo‑nitrogenase was underrepresented. The dinitrogenase reductase component (NifH) and accessory proteins encoded by the nif operon had no significant differential expression, suggesting post-transcriptional regulation of nif gene products in this strain. Overall, this was the first comprehensive proteomic analysis of a diazotrophic strain from the Paenibacillaceae family, and it provided insights related to alternative N2-fixation by Fe-only nitrogenase. SIGNIFICANCE: In this work, we try to understand how the alternative nitrogen fixation system, presented by some diazotrophic bacteria, works. For this, we used the SBR5 lineage of P. sonchi, which presents the alternative system in which the nitrogenase cofactor is composed only of iron. In addition, we tried to unravel the proteome of this strain in different situations of nitrogen fixation, since, for Gram-positive bacteria, these systems are little known. The results achieved, through LC-MS/MS and label-free quantitative analysis, showed an overrepresentation of proteins related to different processes involved with growth under stressful conditions in situations of nitrogen deficiency, in addition to suggesting that some encoded proteins by the nif operon may be regulated at post-transcriptional levels. Our findings represent important steps toward the elucidation of nitrogen fixation systems in Gram-positive diazotrophic bacteria.
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Affiliation(s)
- Igor Daniel Alves Ribeiro
- Departamento de Genética and Programa de Pós-graduação em Genética e Biologia Molecular, Instituto de Biociências, Universidade Federal do Rio Grande do Sul (UFRGS), Av. Bento Gonçalves, 9500 - Prédio 43312, Porto Alegre, RS, Brazil
| | - Jéssica Andrade Paes
- Laboratório de Genômica Estrutural e Funcional, Centro de Biotecnologia, UFRGS, Av. Bento Gonçalves, 9500 Porto Alegre, RS, Brazil
| | - Volker F Wendisch
- Institute for Genetics of Prokaryotes, Faculty of Biology and CeBiTec, Bielefeld University, 33615 Bielefeld, Germany
| | - Henrique Bunselmeyer Ferreira
- Laboratório de Genômica Estrutural e Funcional, Centro de Biotecnologia, UFRGS, Av. Bento Gonçalves, 9500 Porto Alegre, RS, Brazil
| | - Luciane Maria Pereira Passaglia
- Departamento de Genética and Programa de Pós-graduação em Genética e Biologia Molecular, Instituto de Biociências, Universidade Federal do Rio Grande do Sul (UFRGS), Av. Bento Gonçalves, 9500 - Prédio 43312, Porto Alegre, RS, Brazil.
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42
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Kramer BJ, Turk-Kubo K, Zehr JP, Gobler CJ. Intensification of harmful cyanobacterial blooms in a eutrophic, temperate lake caused by nitrogen, temperature, and CO 2. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 915:169885. [PMID: 38190910 DOI: 10.1016/j.scitotenv.2024.169885] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2023] [Revised: 01/01/2024] [Accepted: 01/01/2024] [Indexed: 01/10/2024]
Abstract
Warmer temperatures can significantly increase the intensity of cyanobacterial harmful algal blooms (CHABs) in eutrophic freshwater ecosystems. However, few studies have examined the effects of CO2 enrichment in tandem with elevated temperature and/or nutrients on cyanobacterial taxa in freshwater ecosystems. Here, we observed changes in the biomass of cyanobacteria, nutrients, pH, and carbonate chemistry over a two-year period in a shallow, eutrophic freshwater lake and performed experiments to examine the effects and co-effects of CO2, temperature, and nutrient enrichment on cyanobacterial and N2-fixing (diazotrophic) communities assessed via high throughput sequencing of the 16S rRNA and nifH genes, respectively. During both years, there were significant CHABs (50-500 μg cyanobacterial chlorophyll-a L-1) and lake CO2 levels were undersaturated (≤300 μatm pCO2). NH4+ significantly increased the net growth rates of cyanobacteria as well as the biomass of the diazotrophic cyanobacterial order Nostocales under elevated and ambient CO2 conditions. In a fall experiment, the N2 fixation rates of Nostocales were significantly higher when populations were enriched with CO2 and P, relative to CO2-enriched populations that were not amended with P. During a summer experiment, N2 fixation rates increased significantly under N and CO2 - enriched conditions relative to N-enriched and ambient CO2 conditions. Nostocales dominated the diazotrophic communities of both experiments, achieving the highest relative abundance under CO2-enriched conditions when N was added in the first experiment and when CO2 and temperature were elevated in the second experiment, when N2 fixation rates also increased significantly. Collectively, this study indicates that N promotes cyanobacterial blooms including those formed by Dolichospermum and that the biomass and N2 fixation rates of diazotrophic cyanobacterial taxa may benefit from enhanced CO2 levels in eutrophic lakes.
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Affiliation(s)
- Benjamin J Kramer
- School of Marine and Atmospheric Sciences, Stony Brook University, Southampton, NY, United States
| | - Kendra Turk-Kubo
- Oceans Sciences Department, University of California at Santa Cruz, CA, United States
| | - Jonathan P Zehr
- Oceans Sciences Department, University of California at Santa Cruz, CA, United States
| | - Christopher J Gobler
- School of Marine and Atmospheric Sciences, Stony Brook University, Southampton, NY, United States.
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43
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Lin L, Ma R, Jiang R, Lin S. Design of high performance nitrogen reduction electrocatalysts by doping defective polyoxometalate with a single atom promoter. Phys Chem Chem Phys 2024; 26:8494-8503. [PMID: 38411205 DOI: 10.1039/d3cp06077b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/28/2024]
Abstract
Single-atom catalysts (SACs) are emerging as promising candidates for electrochemical nitrogen reduction reaction (NRR). Previous studies have shown that the single-atom centers of SACs can not only serve as active sites, but also act as promoters to affect the catalytic properties. However, the use of single metal atoms as promoters in electrocatalysis has rarely been studied. In this work, the defective Keggin-type phosphomolybdic acid (PMA) is used as a substrate to support the single metal atoms. We aim to tune the electronic structures of the exposed molybdenum active sites on defective PMA by using these supported single atoms as promoters for efficient NRR. Firstly, the stability and N2 adsorption capacity were studied to screen for an effective catalyst capable of activating N2. Most of the SACs were found to have good stability and N2 adsorption capacity. Then, we compared the selectivity and NRR activity of the catalysts and found that catalysts with metal atom promoters have improved NRR selectivity and activity. Finally, electronic structure analysis was carried out to understand the promoting effect of the promoter on N2 activation and the activity of the NRR process. This work provides a new strategy for designing efficient catalysts for electrocatalytic reactions by introducing promoters.
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Affiliation(s)
- Linghui Lin
- State Key Laboratory of Photocatalysis on Energy and Environment, College of Chemistry, Fuzhou University, Fuzhou 350002, China.
| | - Ruijie Ma
- State Key Laboratory of Photocatalysis on Energy and Environment, College of Chemistry, Fuzhou University, Fuzhou 350002, China.
| | - Rong Jiang
- Institute of Advanced Energy Materials, Fuzhou University, Fuzhou 350002, China
| | - Sen Lin
- State Key Laboratory of Photocatalysis on Energy and Environment, College of Chemistry, Fuzhou University, Fuzhou 350002, China.
- Fujian Provincial Key Laboratory of Theoretical and Computational Chemistry, Xiamen 361005, China
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44
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Edholm F, Nandy A, Reinhardt CR, Kastner DW, Kulik HJ. Protein3D: Enabling analysis and extraction of metal-containing sites from the Protein Data Bank with molSimplify. J Comput Chem 2024; 45:352-361. [PMID: 37873926 DOI: 10.1002/jcc.27242] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2023] [Revised: 09/27/2023] [Accepted: 10/03/2023] [Indexed: 10/25/2023]
Abstract
Metalloenzymes catalyze a wide range of chemical transformations, with the active site residues playing a key role in modulating chemical reactivity and selectivity. Unlike smaller synthetic catalysts, a metalloenzyme active site is embedded in a larger protein, which makes interrogation of electronic properties and geometric features with quantum mechanical calculations challenging. Here we implement the ability to fetch crystallographic structures from the Protein Data Bank and analyze the metal binding sites in the program molSimplify. We show the usefulness of the newly created protein3D class to extract the local environment around non-heme iron enzymes containing a two histidine motif and prepare 372 structures for quantum mechanical calculations. Our implementation of protein3D serves to expand the range of systems molSimplify can be used to analyze and will enable high-throughput study of metal-containing active sites in proteins.
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Affiliation(s)
- Freya Edholm
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA
| | - Aditya Nandy
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA
| | - Clorice R Reinhardt
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA
| | - David W Kastner
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA
- Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA
| | - Heather J Kulik
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA
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45
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Zheng X, Wu H, Gao Y, Chen S, Xue Y, Li Y. Controllable Assembly of Highly Oxidized Cobalt on Graphdiyne Surface for Efficient Conversion of Nitrogen into Nitric Acid. Angew Chem Int Ed Engl 2024; 63:e202316723. [PMID: 38192242 DOI: 10.1002/anie.202316723] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2023] [Revised: 12/25/2023] [Accepted: 01/08/2024] [Indexed: 01/10/2024]
Abstract
The manufacture of nitric acid (HNO3 ) consumes large amounts of energy and causes serious environmental pollution. Electrochemical synthesis is regarded as a key way to eliminate carbon emissions from the chemicals industry. The selective electrosynthesis of HNO3 from nitrogen was achieved by controllable assembly of cobalt metal on graphdiyne surface using a powerful tool of electrochemistry at ambient conditions. As an advanced material, graphdiyne (GDY) has a large conjugated structure on its surface and is rich in sp-C triple bond skeleton, which can achieve strong interaction with metal atoms, resulting in incomplete charge transfer between graphdiyne and cobalt atoms. The experimental and theoretical calculation results show that the highly oxidized cobalt on graphdiyne (HOCo/GDY) can selectively and efficiently activate and convert the nitrogen into the key intermediate *NO, which promotes the efficient overall conversion performance of nitrogen to nitric acid. Thus, the highest nitric acid yield (192.0 μg h-1 mg-1 ) and Faradaic efficiency (21.5 %) were achieved at low potentials.
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Affiliation(s)
- Xuchen Zheng
- CAS Key Laboratory of Organic Solids, Institute of Chemistry, Chinese Academy of Sciences, Beijing, 100190, P. R. China
- School of Chemical Sciences, University of Chinese Academy of Sciences, Beijing, 100049, P. R. China
| | - Han Wu
- CAS Key Laboratory of Organic Solids, Institute of Chemistry, Chinese Academy of Sciences, Beijing, 100190, P. R. China
- School of Chemical Sciences, University of Chinese Academy of Sciences, Beijing, 100049, P. R. China
| | - Yang Gao
- CAS Key Laboratory of Organic Solids, Institute of Chemistry, Chinese Academy of Sciences, Beijing, 100190, P. R. China
| | - Siao Chen
- CAS Key Laboratory of Organic Solids, Institute of Chemistry, Chinese Academy of Sciences, Beijing, 100190, P. R. China
- School of Chemical Sciences, University of Chinese Academy of Sciences, Beijing, 100049, P. R. China
| | - Yurui Xue
- CAS Key Laboratory of Organic Solids, Institute of Chemistry, Chinese Academy of Sciences, Beijing, 100190, P. R. China
- Shandong Provincial Key Laboratory for Science of Material Creation and Energy Conversion, Science Center for Material Creation and Energy Conversion, School of Chemistry and Chemical Engineering, Shandong University, Jinan, 250100, China
| | - Yuliang Li
- CAS Key Laboratory of Organic Solids, Institute of Chemistry, Chinese Academy of Sciences, Beijing, 100190, P. R. China
- School of Chemical Sciences, University of Chinese Academy of Sciences, Beijing, 100049, P. R. China
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46
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Vysotskiy VP, Filippi C, Ryde U. Scalar Relativistic All-Electron and Pseudopotential Ab Initio Study of a Minimal Nitrogenase [Fe(SH) 4H] - Model Employing Coupled-Cluster and Auxiliary-Field Quantum Monte Carlo Many-Body Methods. J Phys Chem A 2024; 128:1358-1374. [PMID: 38324717 PMCID: PMC10895656 DOI: 10.1021/acs.jpca.3c05808] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2023] [Revised: 01/03/2024] [Accepted: 01/03/2024] [Indexed: 02/09/2024]
Abstract
Nitrogenase is the only enzyme that can cleave the triple bond in N2, making nitrogen available to organisms. The detailed mechanism of this enzyme is currently not known, and computational studies are complicated by the fact that different density functional theory (DFT) methods give very different energetic results for calculations involving nitrogenase models. Recently, we designed a [Fe(SH)4H]- model with the fifth proton binding either to Fe or S to mimic different possible protonation states of the nitrogenase active site. We showed that the energy difference between these two isomers (ΔE) is hard to estimate with quantum-mechanical methods. Based on nonrelativistic single-reference coupled-cluster (CC) calculations, we estimated that the ΔE is 101 kJ/mol. In this study, we demonstrate that scalar relativistic effects play an important role and significantly affect ΔE. Our best revised single-reference CC estimates for ΔE are 85-91 kJ/mol, including energy corrections to account for contributions beyond triples, core-valence correlation, and basis-set incompleteness error. Among coupled-cluster approaches with approximate triples, the canonical CCSD(T) exhibits the largest error for this problem. Complementary to CC, we also used phaseless auxiliary-field quantum Monte Carlo calculations (ph-AFQMC). We show that with a Hartree-Fock (HF) trial wave function, ph-AFQMC reproduces the CC results within 5 ± 1 kJ/mol. With multi-Slater-determinant (MSD) trials, the results are 82-84 ± 2 kJ/mol, indicating that multireference effects may be rather modest. Among the DFT methods tested, τ-HCTH, r2SCAN with 10-13% HF exchange with and without dispersion, and O3LYP/O3LYP-D4, and B3LYP*/B3LYP*-D4 generally perform the best. The r2SCAN12 (with 12% HF exchange) functional mimics both the best reference MSD ph-AFQMC and CC ΔE results within 2 kJ/mol.
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Affiliation(s)
- Victor P. Vysotskiy
- Department
of Computational Chemistry, Lund University,
Chemical Centre, SE-221 00 Lund, Sweden
| | - Claudia Filippi
- MESA+
Institute for Nanotechnology, University
of Twente, P.O. Box 217, Enschede 7500 AE, Netherlands
| | - Ulf Ryde
- Department
of Computational Chemistry, Lund University,
Chemical Centre, SE-221 00 Lund, Sweden
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47
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Zhang X, Su R, Li J, Huang L, Yang W, Chingin K, Balabin R, Wang J, Zhang X, Zhu W, Huang K, Feng S, Chen H. Efficient catalyst-free N 2 fixation by water radical cations under ambient conditions. Nat Commun 2024; 15:1535. [PMID: 38378822 PMCID: PMC10879522 DOI: 10.1038/s41467-024-45832-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2023] [Accepted: 02/05/2024] [Indexed: 02/22/2024] Open
Abstract
The growth and sustainable development of humanity is heavily dependent upon molecular nitrogen (N2) fixation. Herein we discover ambient catalyst-free disproportionation of N2 by water plasma which occurs via the distinctive HONH-HNOH+• intermediate to yield economically valuable nitroxyl (HNO) and hydroxylamine (NH2OH) products. Calculations suggest that the reaction is prompted by the coordination of electronically excited N2 with water dimer radical cation, (H2O)2+•, in its two-center-three-electron configuration. The reaction products are collected in a 76-needle array discharge reactor with product yields of 1.14 μg cm-2 h-1 for NH2OH and 0.37 μg cm-2 h-1 for HNO. Potential applications of these compounds are demonstrated to make ammonia (for NH2OH), as well as to chemically react and convert cysteine, and serve as a neuroprotective agent (for HNO). The conversion of N2 into HNO and NH2OH by water plasma could offer great profitability and reduction of polluting emissions, thus giving an entirely look and perspectives to the problem of green N2 fixation.
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Affiliation(s)
- Xiaoping Zhang
- Jiangxi Key Laboratory for Mass Spectrometry and Instrumentation, East China University of Technology, Nanchang, 330013, P. R. China
| | - Rui Su
- School of Pharmacy, Jiangxi University of Chinese Medicine, Nanchang, 330004, P. R. China
- State Key Laboratory of Inorganic Synthesis and Preparative Chemistry, College of Chemistry, Jilin University, Changchun, 130012, P. R. China
| | - Jingling Li
- Jiangxi Key Laboratory for Mass Spectrometry and Instrumentation, East China University of Technology, Nanchang, 330013, P. R. China
| | - Liping Huang
- School of Pharmacy, Jiangxi University of Chinese Medicine, Nanchang, 330004, P. R. China
| | - Wenwen Yang
- Jiangxi Key Laboratory for Mass Spectrometry and Instrumentation, East China University of Technology, Nanchang, 330013, P. R. China
| | - Konstantin Chingin
- School of Pharmacy, Jiangxi University of Chinese Medicine, Nanchang, 330004, P. R. China
| | - Roman Balabin
- School of Pharmacy, Jiangxi University of Chinese Medicine, Nanchang, 330004, P. R. China
| | - Jingjing Wang
- School of Pharmacy, Jiangxi University of Chinese Medicine, Nanchang, 330004, P. R. China
| | - Xinglei Zhang
- Jiangxi Key Laboratory for Mass Spectrometry and Instrumentation, East China University of Technology, Nanchang, 330013, P. R. China
| | - Weifeng Zhu
- School of Pharmacy, Jiangxi University of Chinese Medicine, Nanchang, 330004, P. R. China
| | - Keke Huang
- State Key Laboratory of Inorganic Synthesis and Preparative Chemistry, College of Chemistry, Jilin University, Changchun, 130012, P. R. China
| | - Shouhua Feng
- State Key Laboratory of Inorganic Synthesis and Preparative Chemistry, College of Chemistry, Jilin University, Changchun, 130012, P. R. China
| | - Huanwen Chen
- Jiangxi Key Laboratory for Mass Spectrometry and Instrumentation, East China University of Technology, Nanchang, 330013, P. R. China.
- School of Pharmacy, Jiangxi University of Chinese Medicine, Nanchang, 330004, P. R. China.
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48
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Siegbahn PEM. Computational Model Study of the Experimentally Suggested Mechanism for Nitrogenase. J Phys Chem B 2024; 128:985-989. [PMID: 38237063 PMCID: PMC10839828 DOI: 10.1021/acs.jpcb.3c07675] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2023] [Revised: 01/03/2024] [Accepted: 01/04/2024] [Indexed: 02/02/2024]
Abstract
The mechanism for N2 activation in the E4 state of nitrogenase was investigated by model calculations. In the experimentally suggested mechanism, the E4 state is obtained after four reductions to the ground state. In a recent theoretical study, results for a different mechanism have been found in excellent agreement with available Electron Paramagnetic Resonance (EPR) experiments for E4. The two hydrides in E4 leave as H2 concertedly with the binding of N2. The mechanism suggested differs from the experimentally suggested one by a requirement for four activation steps prior to catalysis. In the present study, the experimentally suggested mechanism is studied using the same methods as those used in the previous study on the theoretical mechanism. The computed results make it very unlikely that a structure obtained after four reductions from the ground state has two hydrides, and the experimentally suggested mechanism does therefore not agree with the EPR experiments for E4. Another structure with only one hydride is here suggested to be the one that has been observed to bind N2 after only four reductions of the ground state.
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Affiliation(s)
- Per E. M. Siegbahn
- Department of Organic Chemistry,
Arrhenius Laboratory, Stockholm University, SE-106 91 Stockholm, Sweden
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49
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Wang Y, Xu Y, Cheng C, Zhang B, Zhang B, Yu Y. Phase-Regulated Active Hydrogen Behavior on Molybdenum Disulfide for Electrochemical Nitrate-to-Ammonia Conversion. Angew Chem Int Ed Engl 2024; 63:e202315109. [PMID: 38059554 DOI: 10.1002/anie.202315109] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2023] [Revised: 11/19/2023] [Accepted: 12/07/2023] [Indexed: 12/08/2023]
Abstract
Electrochemical reduction of nitrate waste is promising for environmental remediation and ammonia preparation. This process includes multiple hydrogenation steps, and thus the active hydrogen behavior on the surface of the catalyst is crucial. The crystal phase referred to the atomic arrangements in crystals has a great effect on active hydrogen, but the influence of the crystal phase on nitrate reduction is still unclear. Herein, enzyme-mimicking MoS2 in different crystal phases (1T and 2H) are used as models. The Faradaic efficiency of ammonia reaches ≈90 % over 1T-MoS2 , obviously outperforming that of 2H-MoS2 (27.31 %). In situ Raman spectra and theoretical calculations reveal that 1T-MoS2 produces more active hydrogen on edge S sites at a more positive potential and conducts an effortless pathway from nitrate to ammonia instead of multiple energetically demanding hydrogenation steps (such as *HNO to *HNOH) performed on 2H-MoS2 .
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Affiliation(s)
- Yuting Wang
- Department of Chemistry, School of Science, Institute of Molecular Plus, Tianjin University, Tianjin, 300072, China
| | - Yue Xu
- Department of Chemistry, School of Science, Institute of Molecular Plus, Tianjin University, Tianjin, 300072, China
| | - Chuanqi Cheng
- Institute of New Energy Materials, School of Materials Science and Engineering, Tianjin University Tianjin, 300072 (China)
| | - Baoshun Zhang
- Department of Chemistry, School of Science, Institute of Molecular Plus, Tianjin University, Tianjin, 300072, China
- Tianjin University-Asia Silicon Joint Research Center of Ammonia-Hydrogen New Energy, Qinghai, 810007, China
| | - Bin Zhang
- Department of Chemistry, School of Science, Institute of Molecular Plus, Tianjin University, Tianjin, 300072, China
| | - Yifu Yu
- Department of Chemistry, School of Science, Institute of Molecular Plus, Tianjin University, Tianjin, 300072, China
- Tianjin University-Asia Silicon Joint Research Center of Ammonia-Hydrogen New Energy, Qinghai, 810007, China
- Haihe Laboratory of Sustainable Chemical Transformations, Tianjin, 300192, China
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50
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Ahmed M, Wang C, Zhao Y, Sathish CI, Lei Z, Qiao L, Sun C, Wang S, Kennedy JV, Vinu A, Yi J. Bridging Together Theoretical and Experimental Perspectives in Single-Atom Alloys for Electrochemical Ammonia Production. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2024:e2308084. [PMID: 38243883 DOI: 10.1002/smll.202308084] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2023] [Revised: 10/26/2023] [Indexed: 01/22/2024]
Abstract
Ammonia is an essential commodity in the food and chemical industry. Despite the energy-intensive nature, the Haber-Bosch process is the only player in ammonia production at large scales. Developing other strategies is highly desirable, as sustainable and decentralized ammonia production is crucial. Electrochemical ammonia production by directly reducing nitrogen and nitrogen-based moieties powered by renewable energy sources holds great potential. However, low ammonia production and selectivity rates hamper its utilization as a large-scale ammonia production process. Creating effective and selective catalysts for the electrochemical generation of ammonia is critical for long-term nitrogen fixation. Single-atom alloys (SAAs) have become a new class of materials with distinctive features that may be able to solve some of the problems with conventional heterogeneous catalysts. The design and optimization of SAAs for electrochemical ammonia generation have recently been significantly advanced. This comprehensive review discusses these advancements from theoretical and experimental research perspectives, offering a fundamental understanding of the development of SAAs for ammonia production.
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Affiliation(s)
- MuhammadIbrar Ahmed
- Global Innovative Center of Advanced Nanomaterials, School of Engineering, College of Engineering, Science, and Environment, University of Newcastle, Callaghan, NSW, 2308, Australia
| | - Cheng Wang
- CSIRO Energy Centre, 10 Murray Dwyer Circuit, Mayfield West, NSW, 2304, Australia
| | - Yong Zhao
- CSIRO Energy Centre, 10 Murray Dwyer Circuit, Mayfield West, NSW, 2304, Australia
| | - C I Sathish
- Global Innovative Center of Advanced Nanomaterials, School of Engineering, College of Engineering, Science, and Environment, University of Newcastle, Callaghan, NSW, 2308, Australia
| | - Zhihao Lei
- Global Innovative Center of Advanced Nanomaterials, School of Engineering, College of Engineering, Science, and Environment, University of Newcastle, Callaghan, NSW, 2308, Australia
| | - Liang Qiao
- University of Electronic Science and Technology of China, Chengdu, 610054, China
| | - Chenghua Sun
- Centre for Translational Atomaterials, Faculty of Science, Engineering and Technology, Swinburne University of Technology, Hawthorn, Victoria, 3122, Australia
| | - Shaobin Wang
- School of Chemical Engineering and Advanced Materials, The University of Adelaide, Adelaide, SA, 5005, Australia
| | - John V Kennedy
- National Isotope Centre, GNS Science, P.O. Box 31312, Lower Hutt, 5010, New Zealand
| | - Ajayan Vinu
- Global Innovative Center of Advanced Nanomaterials, School of Engineering, College of Engineering, Science, and Environment, University of Newcastle, Callaghan, NSW, 2308, Australia
| | - Jiabao Yi
- Global Innovative Center of Advanced Nanomaterials, School of Engineering, College of Engineering, Science, and Environment, University of Newcastle, Callaghan, NSW, 2308, Australia
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