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Polaczek J, Kieca K, Oszajca M, Impert O, Katafias A, Chatterjee D, Ćoćić D, Puchta R, Stochel G, Hubbard CD, van Eldik R. A Personal Account on Inorganic Reaction Mechanisms. CHEM REC 2023:e202300278. [PMID: 37821418 DOI: 10.1002/tcr.202300278] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2023] [Revised: 09/22/2023] [Indexed: 10/13/2023]
Abstract
The presented Review is focused on the latest research in the field of inorganic chemistry performed by the van Eldik group and his collaborators. The first part of the manuscript concentrates on the interaction of nitric oxide and its derivatives with biologically important compounds. We summarized mechanistic information on the interaction between model porphyrin systems (microperoxidase) and NO as well as the recent studies on the formation of nitrosylcobalamin (CblNO). The following sections cover the characterization of the Ru(II)/Ru(III) mixed-valence ion-pair complexes, including Ru(II)/Ru(III)(edta) complexes. The last part concerns the latest mechanistic information on the DFT techniques applications. Each section presents the most important results with the mechanistic interpretations.
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Affiliation(s)
- Justyna Polaczek
- Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387, Kraków, Poland
| | - Konrad Kieca
- Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387, Kraków, Poland
- Jagiellonian University, Doctoral School of Exact and Natural Sciences, Kraków, 30-348, Krakow, Poland
| | - Maria Oszajca
- Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387, Kraków, Poland
| | - Olga Impert
- Faculty of Chemistry, Nicolaus Copernicus University in Torun, Gagarina 7, 87-100, Torun, Poland
| | - Anna Katafias
- Faculty of Chemistry, Nicolaus Copernicus University in Torun, Gagarina 7, 87-100, Torun, Poland
| | - Debabrata Chatterjee
- Faculty of Chemistry, Nicolaus Copernicus University in Torun, Gagarina 7, 87-100, Torun, Poland
- Vice-Chancellor's Research Group, Zoology Department, University of Burdwan, Burdwan, 713104, India
| | - Dušan Ćoćić
- University of Kragujevac, Faculty of Science, Department of Chemistry, Radoja Domanovića 12, P. O. Box 60, 34000, Kragujevac, Serbia
| | - Ralph Puchta
- Department of Chemistry and Pharmacy, University of Erlangen-Nuremberg, Egerlandstrasse 1, 91058, Erlangen, Germany
- Central Institute for Scientific Computing (CISC), University of Erlangen-Nuremberg, Martensstr. 5a, 91058, Erlangen, Germany
- Computer Chemistry Center, Department of Chemistry and Pharmacy, University of Erlangen-Nuremberg, Nägelsbachstr. 25, 91052, Erlangen, Germany
| | - Grażyna Stochel
- Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387, Kraków, Poland
| | - Colin D Hubbard
- Department of Chemistry, University of New Hampshire, Durham, 03824, USA
| | - Rudi van Eldik
- Department of Chemistry and Pharmacy, University of Erlangen-Nuremberg, Egerlandstrasse 1, 91058, Erlangen, Germany
- Faculty of Chemistry, Nicolaus Copernicus University in Torun, Gagarina 7, 87-100, Torun, Poland
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Affiliation(s)
- Shoutao Zhang
- Centre for Advanced
Optoelectronic Functional Materials Research and Key Laboratory for
UV Light-Emitting Materials and Technology of Ministry of Education, Northeast Normal University, Changchun 130024, China
| | - Fei Li
- Centre for Advanced
Optoelectronic Functional Materials Research and Key Laboratory for
UV Light-Emitting Materials and Technology of Ministry of Education, Northeast Normal University, Changchun 130024, China
| | - Haiyang Xu
- Centre for Advanced
Optoelectronic Functional Materials Research and Key Laboratory for
UV Light-Emitting Materials and Technology of Ministry of Education, Northeast Normal University, Changchun 130024, China
| | - Guochun Yang
- Centre for Advanced
Optoelectronic Functional Materials Research and Key Laboratory for
UV Light-Emitting Materials and Technology of Ministry of Education, Northeast Normal University, Changchun 130024, China
- State Key Laboratory of Superhard Materials, Jilin University, Changchun 130012, China
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Berger RJ, Mera-Adasme R. Glutamyl-glutamate – a tailor-made chelating ligand for the [Be4O]6+ core in basic beryllium complexes and implications on investigations on the origins of chronic beryllium disease. ACTA ACUST UNITED AC 2015. [DOI: 10.1515/znb-2015-0157] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
Density functional theory calculations suggest that l-glutamyl-l-glutamate [H-Glu-Glu-H]2– can act as an efficient chelating ligand in basic beryllium carboxylates of type Be4O(RCO2)6. An exergonic energy balance of –10.6 kcal mol–1 for the substitution of two [AcO]– anions by one [H-Glu-Glu-OH]2– dianion in Be4O(AcO2)6 has been calculated; for a second and third substitutions, the computed energy release amounts to –9.3, and –11.3 kcal mol–1. The coordination geometry of the complexes shows a trend toward less deviation from local octahedral symmetry with increasing number of [H-Glu-Glu-OH]2– ligands. The implications of these findings for the yet unknown molecular origins of chronic beryllium disease (CBD) are discussed, and a Be4O moiety is suggested as the beryllium species engaged in CBD.
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Affiliation(s)
- Raphael J.F. Berger
- Materialchemie, Paris-Lodron Universität Salzburg, Hellbrunner Strasse 34, 5020 Salzburg, Austria; and Department of Chemistry, P.O. Box 55 FI-0014, University of Helsinki, Finland
| | - Raúl Mera-Adasme
- Laboratorio de Química Inorgánica Teórica, Departamento de Química, Facultad de Ciencias, Universidad de Chile, Santiago, Chile
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Lobanov SS, Zhu Q, Holtgrewe N, Prescher C, Prakapenka VB, Oganov AR, Goncharov AF. Stable magnesium peroxide at high pressure. Sci Rep 2015; 5:13582. [PMID: 26323635 PMCID: PMC4555032 DOI: 10.1038/srep13582] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2015] [Accepted: 07/30/2015] [Indexed: 11/17/2022] Open
Abstract
Rocky planets are thought to comprise compounds of Mg and O as these are among the most abundant elements, but knowledge of their stable phases may be incomplete. MgO is known to be remarkably stable to very high pressure and chemically inert under reduced condition of the Earth’s lower mantle. However, in exoplanets oxygen may be a more abundant constituent. Here, using synchrotron x-ray diffraction in laser-heated diamond anvil cells, we show that MgO and oxygen react at pressures above 96 GPa and T = 2150 K with the formation of I4/mcm MgO2. Raman spectroscopy detects the presence of a peroxide ion (O22−) in the synthesized material as well as in the recovered specimen. Likewise, energy-dispersive x-ray spectroscopy confirms that the recovered sample has higher oxygen content than pure MgO. Our finding suggests that MgO2 may be present together or instead of MgO in rocky mantles and rocky planetary cores under highly oxidized conditions.
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Affiliation(s)
- Sergey S Lobanov
- Geophysical Laboratory, Carnegie Institution of Washington, Washington, DC 20015, USA.,V.S. Sobolev Institute of Geology and Mineralogy SB RAS, Novosibirsk 630090, Russia
| | - Qiang Zhu
- Department of Geosciences, Department of Physics and Astronomy, Stony Brook University, Stony Brook, NY 11794, USA
| | - Nicholas Holtgrewe
- Geophysical Laboratory, Carnegie Institution of Washington, Washington, DC 20015, USA.,Howard University, 2400 Sixth Street NW, Washington, DC 20059, USA
| | - Clemens Prescher
- Center for Advanced Radiation Sources, University of Chicago, Chicago, IL 60632, USA
| | - Vitali B Prakapenka
- Center for Advanced Radiation Sources, University of Chicago, Chicago, IL 60632, USA
| | - Artem R Oganov
- Department of Geosciences, Department of Physics and Astronomy, Stony Brook University, Stony Brook, NY 11794, USA.,Moscow Institute of Physics and Technology, 9 Institutskiy lane, Dolgoprudny city, Moscow Region, 141700, Russian Federation.,School of Materials Science, Northwestern Polytechnical University, Xi'an, 710072, China.,Skolkovo Institute of Science and Technology, Skolkovo Innovation Center, 5 Nobel St., Moscow 143026, Russia
| | - Alexander F Goncharov
- Geophysical Laboratory, Carnegie Institution of Washington, Washington, DC 20015, USA.,Key Laboratory of Materials Physics, Institute of Solid State Physics, CAS, Hefei, 230031, China.,University of Science and Technology of China, Hefei, 230026, China
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Radical decomposition of hydrogen peroxide catalyzed by aqua complexes [M(H2O)n]2+ (M=Be, Zn, Cd). J Catal 2014. [DOI: 10.1016/j.jcat.2014.03.010] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Zhao X, Nguyen MC, Wang CZ, Ho KM. Structures and stabilities of alkaline earth metal peroxides XO2 (X = Ca, Be, Mg) studied by a genetic algorithm. RSC Adv 2013. [DOI: 10.1039/c3ra43617a] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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Berger RJF, Jana S, Monkowius U, Mitzel NW. Bis(μ-diisopropyl-hydoxylaminato)-κ(2) O:N;κ(2) O:O-bis-[(diisopropyl-hydoxylaminato-κO)beryllium]. Acta Crystallogr Sect E Struct Rep Online 2012; 68:m1463. [PMID: 23468690 PMCID: PMC3588725 DOI: 10.1107/s1600536812045655] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2012] [Accepted: 11/05/2012] [Indexed: 11/30/2022]
Abstract
The title compound, [Be2(C6H14NO)4], was prepared from a solution of BeCl2 in diethyl ether and two equivalents of O-lithiated N,N-diisopropylhydoxylamine. The molecular structure is composed of a dinuclear unit forming a central five-membered planar Be—O—Be—O—N ring (sum of internal angles = 540.0°; r.m.s. deviation from planarity = 0.0087 Å). Both Be atoms show the unusual coordination number of three, with one Be atom coordinated by three O atoms and the other by two O atoms and one N atom, both in distorted trigonal–planar environments. The Be—O distances are in the range 1.493 (5)–1.600 (5) Å and the Be—N distance is 1.741 (5) Å.
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Pyykkö P. Predicting new, simple inorganic species by quantum chemical calculations: some successes. Phys Chem Chem Phys 2012; 14:14734-42. [DOI: 10.1039/c2cp24003c] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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