Electron Paramagnetic resonance studies of nickel(III)-Oligopeptide complexes

Tuning Receptor Properties of Metal-Amyloid Beta Complexes. Studies on the Interaction between Ni(II)-Aβ5-9 and Phosphates/Nucleotides

Amyloid-beta (Aβ) peptides, potentially relevant in the pathology of Alzheimer's disease, possess distinctive coordination properties, enabling an effective binding of transition-metal ions, with a preference for Cu(II). In this work, we found that a N-truncated Aβ analogue bearing a His-2 motif, Aβ5-9, forms a stable Ni(II) high-spin octahedral complex at a physiological pH of 7.4 with labile coordination sites and facilitates ternary interactions with phosphates and nucleotides. As the pH increased above 9, a spin transition from a high-spin to a low-spin square-planar Ni(II) complex was observed. Employing electrochemical techniques, we showed that interactions between the binary Ni(II)-Aβ5-9 complex and phosphate species result in significant changes in the Ni(II) oxidation signal. Thus, the Ni(II)-Aβ5-9 complex could potentially serve as a receptor in electrochemical biosensors for phosphate species. The obtained results could also be important for nickel toxicology.

A Kinetic Study of the Electron-Transfer Reactions of Nickel(III,II) Tripeptide Complexes with Cyano Complexes of Molybdenum, Tungsten, and Iron

Experimentally measured rate constants, k₁₂^obsd, for the reductions of [Ni(III)tripeptides(H₂O)₂] with Fe(CN)₆^4-, Mo(CN)₈^4-, and W(CN)₈^4- are 10² to 10⁵ times faster than the calculated rate constants with the Marcus theory for outer-sphere electron-transfer processes, k₁₂^calc, even when work terms are considered. This gives rise to a kinetic advantage of k₁₂^obsd/k₁₂^calc = 10²-10⁵, which is consistent with an inner-sphere electron-transfer mechanism via a bridged intermediate. In addition, k₁₂^obsd values are nearly independent of the electrochemical driving force of the reactions. This is consistent with one of the two axial water ligands coordinated to [Ni(III)tripeptides(H₂O)₂] being substituted in the rate-limiting step to form bridged intermediates of the type [(CN)_5or7M-(CN)-Ni^III(tripeptide)(H₂O)]^4- with M = Fe^II, Mo^IV, or W^IV. A limiting rate constant of H₂O replacement from [Ni(III)tripeptides(H₂O)₂] of (5 ± 2) × 10⁷ M^-1 s^-1 at 25.0 °C is observed. Electron paramagnetic resonance spectra of Ni(III) peptide complexes in the presence of Fe(CN)₆^3-, Mo(CN)₈^3-, or IrCl₆^3- provide evidence for the cyanide-bridged intermediates. Substitution-limited electron-transfer reactions could serve as an additional criterion for inner-sphere pathways when atom or group transfer does not occur during electron-transfer and when precursor and successor complexes cannot be observed directly.

Accessing Ni(III)-thiolate versus Ni(II)-thiyl bonding in a family of Ni-N2S2 synthetic models of NiSOD

Superoxide dismutase (SOD) catalyzes the disproportionation of superoxide (O2(• -)) into H2O2 and O2(g) by toggling through different oxidation states of a first-row transition metal ion at its active site. Ni-containing SODs (NiSODs) are a distinct class of this family of metalloenzymes due to the unusual coordination sphere that is comprised of mixed N/S-ligands from peptide-N and cysteine-S donor atoms. A central goal of our research is to understand the factors that govern reactive oxygen species (ROS) stability of the Ni-S(Cys) bond in NiSOD utilizing a synthetic model approach. In light of the reactivity of metal-coordinated thiolates to ROS, several hypotheses have been proffered and include the coordination of His1-Nδ to the Ni(II) and Ni(III) forms of NiSOD, as well as hydrogen bonding or full protonation of a coordinated S(Cys). In this work, we present NiSOD analogues of the general formula [Ni(N2S)(SR')](-), providing a variable location (SR' = aryl thiolate) in the N2S2 basal plane coordination sphere where we have introduced o-amino and/or electron-withdrawing groups to intercept an oxidized Ni species. The synthesis, structure, and properties of the NiSOD model complexes (Et4N)[Ni(nmp)(SPh-o-NH2)] (2), (Et4N)[Ni(nmp)(SPh-o-NH2-p-CF3)] (3), (Et4N)[Ni(nmp)(SPh-p-NH2)] (4), and (Et4N)[Ni(nmp)(SPh-p-CF3)] (5) (nmp(2-) = dianion of N-(2-mercaptoethyl)picolinamide) are reported. NiSOD model complexes with amino groups positioned ortho to the aryl-S in SR' (2 and 3) afford oxidized species (2(ox) and 3(ox)) that are best described as a resonance hybrid between Ni(III)-SR and Ni(II)-(•)SR based on ultraviolet-visible (UV-vis), magnetic circular dichroism (MCD), and electron paramagnetic resonance (EPR) spectroscopies, as well as density functional theory (DFT) calculations. The results presented here, demonstrating the high percentage of S(3p) character in the highest occupied molecular orbital (HOMO) of the four-coordinate reduced form of NiSOD (NiSODred), suggest that the transition from NiSODred to the five-coordinate oxidized form of NiSOD (NiSODox) may go through a four-coordinate Ni-(•)S(Cys) (NiSODox-Hisoff) that is stabilized by coordination to Ni(II).

Controlling the chiral inversion reaction of the metallopeptide Ni-asparagine-cysteine-cysteine with dioxygen

Synthetically generated metallopeptides have the potential to serve a variety of roles in biotechnology applications, but the use of such systems is often hampered by the inability to control secondary reactions. We have previously reported that the Ni(II) complex of the tripeptide LLL-asparagine-cysteine-cysteine, LLL-Ni(II)-NCC, undergoes metal-facilitated chiral inversion to dld-Ni(II)-NCC, which increases the observed superoxide scavenging activity. However, the mechanism for this process remained unexplored. Electronic absorption and circular dichroism studies of the chiral inversion reaction of Ni(II)-NCC reveal a unique dependence on dioxygen. Specifically, in the absence of dioxygen, the chiral inversion is not observed, even at elevated pH, whereas the addition of O(2) initiates this reactivity and concomitantly generates superoxide. Scavenging experiments using acetaldehyde are indicative of the formation of carbanion intermediates, demonstrating that inversion takes place by deprotonation of the alpha carbons of Asn1 and Cys3. Together, these data are consistent with the chiral inversion being dependent on the formation of a Ni(III)-NCC intermediate from Ni(II)-NCC and O(2). The data further suggest that the anionic thiolate and amide ligands in Ni(II)-NCC inhibit Cα-H deprotonation for the Ni(II) oxidation state, leading to a stable complex in the absence of O(2). Together, these results offer insights into the factors controlling reactivity in synthetic metallopeptides.

Shuttling of nickel oxidation states in N4S2 coordination geometry versus donor strength of tridentate N2S donor ligands

Seven bis-Ni(II) complexes of a N(2)S donor set ligand have been synthesized and examined for their ability to stabilize Ni(0), Ni(I), Ni(II) and Ni(III) oxidation states. Compounds 1-5 consist of modifications of the pyridine ring of the tridentate Schiff base ligand, 2-pyridyl-N-(2'-methylthiophenyl)methyleneimine ((X)L1), where X = 6-H, 6-Me, 6-p-ClPh, 6-Br, 5-Br; compound 6 is the reduced amine form (L2); compound 7 is the amide analog (L3). The compounds are perchlorate salts except for 7, which is neutral. Complexes 1 and 3-7 have been structurally characterized. Their coordination geometry is distorted octahedral. In the case of 6, the tridentate ligand coordinates in a facial manner, whereas the remaining complexes display meridional coordination. Due to substitution of the pyridine ring of (X)L1, the Ni-N(py) distances for 1~5 < 3 < 4 increase and UV-vis λ(max) values corresponding to the (3)A(2g)(F)→(3)T(2g)(F) transition show an increasing trend 1~5 < 2 < 3 < 4. Cyclic voltammetry of 1-5 reveals two quasi-reversible reduction waves that correspond to Ni(II)→Ni(I) and Ni(I)→Ni(0) reduction. The E(1/2) for the Ni(II)/Ni(I) couple decreases as 1 > 2 > 3 > 4. Replacement of the central imine N donor in 1 by amine 6 or amide 7 N donors reveals that complex 6 in CH(3)CN exhibits an irreversible reductive response at E(pc) = -1.28 V, E(pa) = +0.25 V vs saturated calomel electrode (SCE). In contrast, complex 7 shows a reversible oxidation wave at E(1/2) = +0.84 V (ΔE(p) = 60 mV) that corresponds to Ni(II)→Ni(III). The electrochemically generated Ni(III) species, [(L3)(2)Ni(III)](+) is stable, showing a new UV-vis band at 470 nm. EPR measurements have also been carried out.

Bisamidate and mixed amine/amidate NiN2S2 complexes as models for nickel-containing acetyl coenzyme A synthase and superoxide dismutase: an experimental and computational study

The distal nickel site of acetyl-CoA synthase (Ni(d)-ACS) and reduced nickel superoxide dismutase (Ni-SOD) display similar square-planar Ni(II)N(2)S(2) coordination environments. One difference between these two sites, however, is that the nickel ion in Ni-SOD contains a mixed amine/amidate coordination motif while the Ni(d) site in Ni-ACS contains a bisamidate coordination motif. To provide insight into the consequences of the different coordination environments on the properties of the Ni ions, we systematically examined two square-planar Ni(II)N(2)S(2) complexes, one with bisthiolate-bisamidate ligation (Et(4)N)(2)(Ni(L1)).2H(2)O (2) [H(4)L1 = N-(2-mercaptoacetyl)-N'-(2-mercaptoethyl)glycinamide] and another with bisthiolate-amine/amidate ligation K(Ni(HL2)) (3) [H(4)L2 = N-(2''-mercaptoethyl)-2-((2'-mercaptoethyl)amino)acetamide]. Although these two complexes differ only by a single amine versus amidate ligand, their chemical properties are quite different. The stronger in-plane ligand field in the bisamidate complex (Ni(II)(L1))(2-) (2) results in an increase in the energies of the d --> d transitions and a considerably more negative oxidation potential. Furthermore, while the bisamidate complex (Ni(II)(L1))(2-) (2) readily forms a trinuclear species (Et(4)N)(2)({Ni(L1)}(2)Ni).H(2)O (1) and reacts rapidly with O(2), presumably via sulfoxidation, the mixed amine/amidate complex (Ni(II)(HL2))(-) (3) remains monomeric and is stable for days in air. Interestingly, the Ni(III) species of the bisamidate complex formed by chemical oxidation with I(2) can be detected by electron paramagnetic resonance (EPR) spectroscopy while the mixed amine/amidate complex immediately decomposes upon oxidation. To explain these experimentally observed properties, we performed S K-edge X-ray absorption spectroscopy and low-temperature (77 K) electronic absorption measurements as well as both hybrid density functional theory (hybrid-DFT) and spectroscopy oriented configuration interaction (SORCI) calculations. These studies demonstrate that the highest occupied molecular orbital (HOMO) of the bisamidate complex (Ni(II)(L1))(2-) (2) has more Ni character and is significantly destabilized relative to the mixed amine/amidate complex (Ni(II)(HL2))(-) (3) by approximately 6.2 kcal mol(-1). The consequence of this destabilization is manifested in the nucleophilic activation of the doubly filled HOMO, which makes (Ni(II)(L1))(2-) (2) significantly more reactive toward electrophiles such as O(2).

Structure and properties of bivalent nickel and copper complexes with pyrazine-amide-thioether coordination: stabilization of trivalent nickel

Acyclic pyrazine-2-carboxamide and thioether containing hexadentate ligand 1,4-bis[o-(pyrazine-2-carboxamidophenyl)]-1,4-dithiobutane (H(2)bpzctb), in its deprotonated form, has afforded light brown [Ni(II)(bpzctb)](1)(S=1) and green [Cu(II)(bpzctb)](2)(S=1/2) complexes. The crystal structures of 1.CH(3)OH and 2.CH(2)Cl(2) revealed that in these complexes the ligand coordinates in a hexadentate mode, affording examples of distorted octahedral M(II)N(2)(pyrazine)N'(2)(amide)S(2)(thioether) coordination. Each complex exhibits in CH(2)Cl(2) a reversible to quasireversible cyclic voltammetric response, corresponding to the Ni(III)/Ni(II)(1) and Cu(II)/Cu(I)(2) redox process. The E(1/2) values reveal that the complexes of bpzctb(2-) are uniformly more anodic by approximately 0.2 V than those of the corresponding complexes with the analogous pyridine ligand, 1,4-bis[o-(pyridine-2-carboxamidophenyl)]-1,4-dithiobutane (H(2)bpctb), attesting that compared to pyridine, pyrazine is a better stabilizer of the Ni(ii) or Cu(i) state. Coulometric oxidation of the previously reported complex [Ni(II)(bpctb)] and 1 generates [Ni(III)(bpctb)](+) and [Ni(III)(bpzctb)](+) species, which exhibit a LMCT transition in the 470--480 nm region and axial EPR spectra corresponding to a tetragonally elongated octahedral geometry. Complex 2 exhibits EPR spectra characteristic of the d(z(2)) ground state.

Decomposition kinetics of Ni(III)-peptide complexes with histidine and histamine as the third residue

The decomposition kinetics of the Ni(III) complexes of Gly(2)HisGly and Gly(2)Ha are studied from p[H(+)] 3.5 to 10, where His is l-histidine and Ha is histamine. In these redox reactions, at least two Ni(III) complexes are reduced to Ni(II) while oxidizing a single peptide ligand. The rate of Ni(III) loss is first order at low pH, mixed order from pH 7.0 to 8.5, and second order at higher pH. The transition from first- to second-order kinetics is attributed to the formation of an oxo-bridged Ni(III)-peptide dimer. The rates of decay of the Ni(III) complexes are general-base assisted with Brønsted beta values of 0.62 and 0.59 for Ni(III)Gly(2)HisGly and Ni(III)Gly(2)Ha, respectively. The coordination of Gly(2)HisGly and Gly(2)Ha to Ni(II) are examined by UV-vis and CD spectroscopy. The square planar Ni(II)(H(-2)Gly(2)HisGly)(-) and Ni(II)(H(-2)Gly(2)Ha) complexes lose an additional proton from an imidazole nitrogen at high pH with pK(a) values of 11.74 and 11.54, respectively. The corresponding Ni(III) complexes have axially coordinated water molecules with pK(a) values of 9.37 and 9.44. At higher pH an additional proton is lost from the imidazole nitrogen with a pK(a) value of 10.50 to give Ni(III)(H(-3)Gly(2)Ha)(H(2)O)(OH)(2-).

Oxidative self-decomposition of the nickel(III) complex of glycylglycyl-L-histidylglycine

Self-decomposition of the nickel(III) doubly deprotonated peptide complex of Gly2HisGly occurs by base-assisted oxidation of the peptide. At < or =p[H+] 7.0, the major pathway is a four-electron oxidation (via 4 Ni(III) complexes) at the alpha carbon of the N-terminal glycyl residue. The product of this oxidation is oxamylglycylhistidylglycine, which hydrolyzes to yield ammonia and oxalylglycylhistidylglycine. Both of these peptide products decompose to give isocyanatoacetylhistidylglycine. A small amount (2%) of oxidative decarboxylation also is observed. In another major pathway above p[H+] 7.0, two Ni(III)-peptide complexes coordinate via an oxo bridge in the axial positions to form a reactive dimer species. This dimer generates two Ni(II)-peptide radical intermediates that cross-link at the alpha carbons of the N-terminal glycyl residues. In 0.13 mM Ni(III)-peptide at p[H+] 10.3, this pathway accounts for 60% of the reaction. The cross-linked peptide is subject to oxidation via atmospheric O2, where the 2,3-diaminobutanedioic acid is converted to a 2,3-diaminobutenedioic acid. The products observed at <p[H+] 7.0 are observed here as well, although in lower yields. The reactivity of Ni(III)(H(-2)Gly2HisGly) is significantly different than that of Cu(III)(H(-2)Gly2HisGly), which undergoes a two-electron oxidation at the histidyl residue with no peptide-peptide cross-linking in basic solution.

Cys-Gly-Cys Tripeptide Complexes of Nickel: Binuclear Analogues for the Catalytic Site in Acetyl Coenzyme A Synthase

The tripeptide, Ac-CysGlyCys-CONH2, is utilized as a ligand to bind Ni in a fashion identical to that found at the active site of acetyl coenzyme A synthase. The Ni-peptide construct is a suitable metalloligand for the preparation of larger structures formed via bridging Cys side chains. The complexes Ni(CysGlyCys)Ni(dppe) and Ni(CysGlyCys)Ni(depe) serve as close structural representations for the binuclear subcluster, exhibiting electrochemical properties that demonstrate facile access to the reduced mixed valent Ni(II)Ni(I) state, which binds CO.

Substitution reactions at the Ni(III) cation in macrobicyclic complexes – Reaction of metal ion complexes prepared from ligands L1 (17-oxa-1,4,8,11-tetraazabicyclo[6.5.6]nonadecane) and L2 (17-oxa-1,4,8,11-tetraazabicyclo[10.5.2]nonadecane) with chloride ion

The potentially penta-coordinating ligand L1 has been synthesized by reaction of the bridge bis-(2-(methylsulfonyl)oxyethyl)ether with the tetraazamacrocycle cyclam (cyclam = 1,4,8,11-tetraazatetradecane). The copper(II) complex was characterized initially and subsequent demetallation provided pure L1. Electrochemical and chemical oxidation of the nickel(II) species yields a Ni(III) ion (low-spin d7, rhombic, gxx 2.195, gyy 2.189, gzz 2.027) of sufficient stability in acidic solutions for kinetic measurements to be undertaken of substitution reactions at the sixth site. The isomeric ligand L2, has been synthesized previously, and reactions of the [Ni(L1)(solv)]3+ and [Ni(L2)(solv)]3+ ions with chloride have also been investigated. In both reactions, an unusually high acid dissociation constant is observed, associated with the proposed replacement of the apical ether oxygen by a water molecule that is bound both to the metal centre and hydrogen bonded to the ether. The structure [Ni(L2)](PF6)2 (monoclinic, P21/c, a = 10.699(2), b = 13.244(4), c = 16.603(2) Å, β = 92.10(1)°) converged at R = 0.055 (R' = 0.057) for 325 parameters using 3293 reflections with I > 2σ(I). In this complex, the detachment of the ether O donor to yield a square-planar complex is confirmed. Comparisons are made with substitution rates at other Ni(III) macrocyclic ions.Key words: nickel(III), substitution, macrobicyclic ligand, synthesis, kinetics.

17O ENDOR detection of a solvent-derived Ni-(OH(x))-Fe bridge that is lost upon activation of the hydrogenase from Desulfovibrio gigas

Crystallographic studies of the hydrogenases (Hases) from Desulfovibrio gigas (Dg) and Desulfovibrio vulgaris Miyazaki (DvM) have revealed heterodinuclear nickel-iron active centers in both enzymes. The structures, which represent the as-isolated (unready) Ni-A (S = (1)/(2)) enzyme state, disclose a nonprotein ligand (labeled as X) bridging the two metals. The bridging atom was suggested to be an oxygenic (O(2)(-) or OH(-)) species in Dg Hase and an inorganic sulfide in DvM Hase. To determine the nature and chemical characteristics of the Ni-X-Fe bridging ligand in Dg Hase, we have performed 35 GHz CW (17)O ENDOR measurements on the Ni-A form of the enzyme, exchanged into H(2)(17)O, on the active Ni-C (S = (1)/(2)) form prepared by H(2)-reduction of Ni-A in H(2)(17)O, and also on Ni-A formed by reoxidation of Ni-C in H(2)(17)O. In the native state of the protein (Ni-A), the bridging ligand does not exchange with the H(2)(17)O solvent. However, after a reduction/reoxidation cycle (Ni-A --> Ni-C --> Ni-A), an (17)O label is introduced at the active site, as seen by ENDOR. Detailed analysis of a 2-D field-frequency plot of ENDOR spectra taken across the EPR envelope of Ni-A((17)O) shows that the incorporated (17)O has a roughly axial hyperfine tensor, A((17)O) approximately [5, 7, 20] MHz, discloses its orientation relative to the g tensor, and also yields an estimate of the quadrupole tensor. The substantial isotropic component (a(iso)((17)O) approximately 11 MHz) of the hyperfine interaction indicates that a solvent-derived (17)O is indeed a ligand to Ni and thus that the bridging ligand X in the Ni-A state of Dg Hase is indeed an oxygenic (O(2)(-) or OH(-)) species; comparison with earlier EPR results by others indicates that the same holds for Ni-B. The small (57)Fe hyperfine coupling seen previously for Ni-A (A((57)Fe) approximately 0.9 MHz) is now shown to persist in Ni-C, A((57)Fe) approximately 0.8 MHz. However, the (17)O signal is lost upon reductive activation to the Ni-C state; reoxidation to Ni-A leads to the reappearance of the signal. Consideration of the electronic structure of the EPR-active states of the dinuclear center leads us to suggest that the oxygenic bridge in Ni-A(B) is lost in Ni-C and is re-formed from solvent upon reoxidation to Ni-A. This implies that the reductive activation to Ni-C opens Ni/Fe coordination sites which may play a central role in the enzyme's activity.

Synthesis of 14-oxa-1,4,8,11-tetraazabicyclo[9.5.3]nonadecane (L1) and a Spectroscopic and Structural Study of [Ni(L1)(ClO4)](ClO4) and of the Macrobicyclic Precursor Diamide Complex, [Ni(HL2)](ClO4); Chloride Substitution Kinetics of the Corresponding [Ni(III)(L1)]3+ Species

The pentadentate ligand 14-oxa-1,4,8,11-tetraazabicyclo[9.5.3]nonadecane (L1) has been synthesized by the high dilution cyclization of 1-oxa-4,8-diazacyclododecane ([10]aneN(2)O) (1) with 1,3-bis(alpha-chloroacetamido)propane (2) and subsequent reduction of the diamide intermediate. The structure [Ni(L1)(ClO(4))](ClO(4)) (P2(1)/c (no. 14), a = 8.608(3), b = 16.618(3), c = 14.924(4) A, beta = 91.53(3) degrees converged at R = 0.050 (R(w) = 0.046) for 307 parameters using 2702 reflections with I > 2sigma(I). For the nickel(II) complex of the (monodeprotonated) precursor diamide ligand 14-oxa-1,4,8,11-tetraazabicyclo[9.5.3]nonadecane-3,9-dione (H(2)L2), [Ni(HL2)](ClO(4)) (Pbca (no. 61), a = 15.1590(3), b = 13.235(2), c = 18.0195(6) A), the structure converged at R = 0.045 (R(w) = 0.038) for 265 parameters using 1703 reflections with I > 3sigma(I). In the reduced system, the cyclam-based ligand adopts a trans-III configuration. The [Ni(L1)(ClO(4))](2+) ion is pseudooctahedral with the Ni-O(ether) 2.094(3) A distance shorter than the Ni-O(perchlorate) 2.252(4) A. The nickel(II) and nickel(III) complexes are six-coordinate in solution. Oxidation of [Ni(L1)(OH(2))](2+) with K(2)S(2)O(8) in aqueous media yielded an axial d(7) Ni(III) species (g( perpendicular) = 2.159 and g( perpendicular) = 2.024 at 77 K). The [Ni(L1)(solv)](2+) ion in CH(3)CN showed two redox waves, Ni(II/I) (an irreversible cathodic peak, E(p,c) = -1.53 V) and Ni(III/II) (E(1/2) = 0.85 V (reversible)) vs Ag/Ag(+). The complex [Ni(HL2)](ClO(4)) displays square-planar geometry with monodeprotonation of the ligand. The ether oxygen is not coordinated. Ni-O(3) = 2.651(6) A and Ni-O(3a) = 2.451(12) A, respectively. The Ni(III/II) oxidation at E(1/2) = 0.24 V (quasi-reversible) vs Ag/Ag(+) is considerably lower than the saturated system. The kinetics of Cl(-) substitution at [Ni(L1)(solv)](3+) are pH dependent. Detachment of the ether oxygen atom is proposed, with insertion of a protonated water molecule which deprotonates at a pK(a) more acidic than in the corresponding cyclam complex. Mechanistic implications are discussed.

Redox chemistry of complexes of nickel(II) with some biologically important peptides in the presence of reduced oxygen species: an ESR study

The reactions between some Ni(II) oligopeptides (Gly-His-Lys, (Gly)4, Asp-Ala-His-Lys, Gly-Gly-His, beta Ala-His, and serum albumin) and reduced oxygen species have been characterized by spin-trapping experiments using DMPO and Me2SO. Most of the peptides possessed superoxide dismutase- and catalase-like activities leading to the formation of either oxene [NiO]2+ or, in the case of beta Ala-His, hydroxyl radicals. Both these species may affect DNA integrity through distinct mechanisms.

Low temperature magnetic circular dichroism spectroscopy as a probe for the optical transitions of paramagnetic nickel in hydrogenase

A partially-purified sample of hydrogenase from Methanobacterium thermoautotrophicum (delta H strain) has been investigated by optical absorption, magnetic circular dichroism and electron paramagnetic resonance spectroscopy. Variable temperature magnetic circular dichroism studies reveal, for the first time, the optical transitions associated with the Ni(III) center in the oxidized enzyme. Low temperature magnetic circular dichroism spectroscopy provides a new method of assessing both the coordination environment of Ni in hydrogenase and the appropriateness of inorganic model complexes.

Purification, characterization and redox properties of hydrogenase from Methanosarcina barkeri (DSM 800)

A soluble hydrogenase from the methanogenic bacterium, Methanosarcina barkeri (DSM 800) has been purified to apparent electrophoretic homogeneity, with an overall 550-fold purification, a 45% yield and a final specific activity of 270 mumol H2 evolved min-1 (mg protein)-1. The hydrogenase has a high molecular mass of approximately equal to 800 kDa and subunits with molecular masses of approximately equal to 60 kDa. The enzyme is stable to heating at 65 degrees C and to exposure to air at 4 degrees C in the oxidized state for periods up to a week. The overall stability of this enzyme is compared with other hydrogenase isolated from strict anaerobic sulfate-reducing bacteria. Ms. barkeri hydrogenase shows an absorption spectrum typical of a non-heme iron protein with maxima at 275 nm, 380 nm and 405 nm. A flavin component, identified as FMN or riboflavin was extracted under acidic conditions and quantified to approximately one flavin molecule per subunit. In addition to this component, 8-10 iron atoms and 0.6-0.8 nickel atom were also detected per subunit. The electron paramagnetic resonance (EPR) spectrum of the native enzyme shows a rhombic signal with g values at 2.24, 2.20 and approximately equal to 2.0. probably due to nickel which is optimally measured at 40 K but still detectable at 77 K. In the reduced state, using dithionite or molecular hydrogen as reductants, at least two types of g = 1.94 EPR signals, due to iron-sulfur centers, could be detected and differentiated on the basis of power and temperature dependence. Center I has g values at 2.04, 1.90 and 1.86, while center II has g values at 2.08, 1.93 and 1.85. When the hydrogenase is reduced by hydrogen or dithionite the rhombic EPR species disappears and is replaced by other EPR-active species with g values at 2.33, 2.23, 2.12, 2.09, 2.04 and 2.00. These complex signals may represent different nickel species and are only observable at temperatures higher than 20 K. In the native preparation, at high temperatures (T greater than 35 K) or in partially reduced samples, a free radical due to the flavin moiety is observed. The EPR spectrum of reduced hydrogenase in 80% Me2SO presents an axial type of spectrum only detectable below 30 K.

ESR characteristics of sulfhydryl-containing peptide-nickel (III) complexes: implication for nickel (III) center of hydrogenases

The Ni(III) complexes of N-mercaptoacetylglycyl-L-histidine and N-mercaptoacetylglycylglycylglycine clearly show the rhombic ESR pattern and g-values similar to the Ni(III) chromophore of hydrogenases. The present results strongly suggest that the Ni(III) center of hydrogenases contains one cysteine sulfur coordination as equatorial ligand in a tetragonal geometry. In addition, axial nitrogen ligand and a sulfur-rich Ni(III) site as in an S4 donor set may be ruled out. Indeed, the Ni(III) ESR features are a useful probe of the Ni(III) center in hydrogenases.