1
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Xue Y, Sexton TM, Yang J, Tschumper GS. Systematic analysis of electronic barrier heights and widths for concerted proton transfer in cyclic hydrogen bonded clusters: (HF) n, (HCl) n and (H 2O) n where n = 3, 4, 5. Phys Chem Chem Phys 2024; 26:12483-12494. [PMID: 38619858 DOI: 10.1039/d4cp00422a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/16/2024]
Abstract
The MP2 and CCSD(T) methods are paired with correlation consistent basis sets as large as aug-cc-pVQZ to optimize the structures of the cyclic minima for (HF)n, (HCl)n and (H2O)n where n = 3-5, as well as the corresponding transition states (TSs) for concerted proton transfer (CPT). MP2 and CCSD(T) harmonic vibrational frequencies confirm the nature of each minimum and TS. Both conventional and explicitly correlated CCSD(T) computations are employed to assess the electronic dissociation energies and barrier heights for CPT near the complete basis (CBS) limit for all 9 clusters. Results for (HF)n are consistent with prior studies identifying Cnh and Dnh point group symmetry for the minima and TSs, respectively. Our computations also confirm that CPT proceeds through Cs TS structures for the C1 minima of (H2O)3 and (H2O)5, whereas the process goes through a TS with D2d symmetry for the S4 global minimum of (H2O)4. This work corroborates earlier findings that the minima for (HCl)3, (HCl)4 and (HCl)5 have C3h, S4 and C1 point group symmetry, respectively, and that the Cnh structures are not minima for n = 4 and 5. Moreover, our computations show the TSs for CPT in (HCl)3, (HCl)4 and (HCl)5 have D3h, D2d, and C2 point group symmetry, respectively. At the CCSD(T) CBS limit, (HF)4 and (HF)5 have the smallest electronic barrier heights for CPT (≈15 kcal mol-1 for both), followed by the HF trimer (≈21 kcal mol-1). The barriers are appreciably higher for the other clusters (around 27 kcal mol-1 for (H2O)4 and (HCl)3; roughly 30 kcal mol-1 for (H2O)3, (H2O)5 and (HCl)4; up to 38 kcal mol-1 for (HCl)5). At the CBS limit, MP2 significantly underestimates the CCSD(T) barrier heights (e.g., by ca. 2, 4 and 7 kcal mol-1 for the pentamers of HF, H2O and HCl, respectively), whereas CCSD overestimates these barriers by roughly the same magnitude. Scaling the barrier heights and dissociation energies by the number of fragments in the cluster reveals strong linear relationships between the two quantities and with the magnitudes of the imaginary vibrational frequency for the TSs.
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Affiliation(s)
- Yuan Xue
- Department of Chemistry and Biochemistry, University of Mississippi, University, MS 38677-1848, USA.
| | - Thomas More Sexton
- School of Arts and Sciences, Chemistry University of Mary, Bismark, ND 58504, USA.
| | - Johnny Yang
- Department of Chemistry and Biochemistry, University of Mississippi, University, MS 38677-1848, USA.
| | - Gregory S Tschumper
- Department of Chemistry and Biochemistry, University of Mississippi, University, MS 38677-1848, USA.
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2
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Alikhani ME, Janesko BG. A two-electron reducing reaction of CO 2 to an oxalate anion: a theoretical study of delocalized (presolvated) electrons in Al(CH 3) n(NH 3) m, n = 0-2 and m = 1-6, clusters. Phys Chem Chem Phys 2024; 26:7149-7156. [PMID: 38349025 DOI: 10.1039/d3cp06096a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/23/2024]
Abstract
Presolvated electron possibility in three oxidation states of aluminum - Al(0), Al(I), and Al(II) - has been theoretically investigated for the Al + 6NH3, Al(CH3) + 5NH3, and Al(CH3)2 + 4NH3 reactions. It has been shown that the metal center adopts a tetrahedral shape for its most stable geometric structure, irrespective of the degree of Al oxidation states. Using different analysis techniques (highest occupied molecular orbital shapes, spin density distributions, and electron delocalization ranges), we showed that presolvated (delocalized) electrons are only formed in the Al(CH3)2(NH3)p coordination complexes when 2 ≤ p ≤ 4. It has also been evidenced that these delocalized electrons being powerful reducing agents allowed two CO2 molecules to be captured and form an oxalate ion in close contact with the [Al2(CH3)2(CH2)2(NH3)4]2+ dication core.
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Affiliation(s)
| | - Benjamin G Janesko
- Department of Chemistry & Biochemistry, Texas Christian University, 2800 S University Dr, Fort Worth, TX, USA.
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3
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Nakanishi T, Hori Y, Shigeta Y, Sato H, Kiyanagi R, Munakata K, Ohhara T, Okazawa A, Shimada R, Sakamoto A, Sato O. Development of an Iron(II) Complex Exhibiting Thermal- and Photoinduced Double Proton-Transfer-Coupled Spin Transition in a Short Hydrogen Bond. J Am Chem Soc 2023; 145:19177-19181. [PMID: 37623927 DOI: 10.1021/jacs.3c06323] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/26/2023]
Abstract
Multiple proton transfer (PT) controllable by external stimuli plays a crucial role in fundamental chemistry, biological activity, and material science. However, in crystalline systems, controlling multiple PT, which results in a distinct protonation state, remains challenging. In this study, we developed a novel tridentate ligand and iron(II) complex with a short hydrogen bond (HB) that exhibits a PT-coupled spin transition (PCST). Single-crystal X-ray and neutron diffraction measurements revealed that the positions of the two protons in the complex can be controlled by temperature and photoirradiation based on the thermal- and photoinduced PCST. The obtained results suggest that designing molecules that form short HBs is a promising approach for developing multiple PT systems in crystals.
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Affiliation(s)
- Takumi Nakanishi
- Institute for Materials Chemistry and Engineering & IRCCS, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan
| | - Yuta Hori
- Center for Computational Sciences, University of Tsukuba, Tsukuba 305-8577, Japan
| | - Yasuteru Shigeta
- Center for Computational Sciences, University of Tsukuba, Tsukuba 305-8577, Japan
| | - Hiroyasu Sato
- Rigaku Corporation, 3-9-12 Matsubaracho, Akishima, Tokyo 196-8666, Japan
| | - Ryoji Kiyanagi
- J-PARC center, Japan Atomic Energy Agency, Tokai, Ibaraki 319-1195, Japan
| | - Koji Munakata
- J-PARC center, Japan Atomic Energy Agency, Tokai, Ibaraki 319-1195, Japan
| | - Takashi Ohhara
- J-PARC center, Japan Atomic Energy Agency, Tokai, Ibaraki 319-1195, Japan
| | - Atsushi Okazawa
- Department of Electrical Engineering and Bioscience, Waseda University, Okubo 3-4-1, Shinjuku-ku, Tokyo, 169-8555, Japan
| | - Rintaro Shimada
- Graduate School of Science and Engineering, Aoyama Gakuin University, 5-10-1 Fuchinobe, Chuo-ku, Sagamihara, Kanagawa 252-5258, Japan
| | - Akira Sakamoto
- Graduate School of Science and Engineering, Aoyama Gakuin University, 5-10-1 Fuchinobe, Chuo-ku, Sagamihara, Kanagawa 252-5258, Japan
| | - Osamu Sato
- Institute for Materials Chemistry and Engineering & IRCCS, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan
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4
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Alkorta I, Benito MT, Elguero J, Doyagüez EG, Patterson MR, Jimeno ML, Dias HVR, Reviriego F. The use of DOSY experiments to determine the solution structures of coinage metal pyrazolates: The case of {[3,5-(CF 3 ) 2 Pz]Ag} 3. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2022; 60:442-451. [PMID: 34935188 DOI: 10.1002/mrc.5242] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2021] [Revised: 12/14/2021] [Accepted: 12/16/2021] [Indexed: 06/14/2023]
Abstract
A series of DOSY experiments have been carried out to determine the solution stoichiometry of silver(I) 3,5-bis (trifluoromethyl)pyrazolate species. This compound exists as a trimer in the solid state (n = 3) but in solutions of chlorinated solvents, the DOSY data suggest the presence of a mixture of solvent stabilized monomer (n = 1) and dimer (n = 2) in equilibrium. Different approximations have been used including the Stokes-Einstein and the Stokes-Einstein-Gierer-Wirtz equations. Some methodological problems are discussed.
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Affiliation(s)
- Ibon Alkorta
- Instituto de Química Médica, CSIC, Madrid, Spain
| | - María Teresa Benito
- Servicio de Resonancia Magnética Nuclear, Centro de Química Orgánica 'Lora-Tamayo', CSIC, Madrid, Spain
| | - José Elguero
- Instituto de Química Médica, CSIC, Madrid, Spain
| | - Elisa García Doyagüez
- Servicio de Resonancia Magnética Nuclear, Centro de Química Orgánica 'Lora-Tamayo', CSIC, Madrid, Spain
| | - Monika R Patterson
- Department of Chemistry and Biochemistry, The University of Texas at Arlington, Arlington, Texas, USA
| | - María Luisa Jimeno
- Servicio de Resonancia Magnética Nuclear, Centro de Química Orgánica 'Lora-Tamayo', CSIC, Madrid, Spain
| | - H V Rasika Dias
- Department of Chemistry and Biochemistry, The University of Texas at Arlington, Arlington, Texas, USA
| | - Felipe Reviriego
- Instituto de Ciencia y Tecnología de Polímeros, CSIC, Madrid, Spain
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5
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Cheng YH, Zhu YC, Kang W, Li X, Fang W. Determination of concerted or stepwise mechanism of hydrogen tunneling from isotope effects: Departure between experiment and theory. J Chem Phys 2022; 156:124304. [DOI: 10.1063/5.0085010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Isotope substitution is an important experimental technique that offers deep insight into reaction mechanisms, as the measured kinetic isotope effects (KIEs) can be directly compared with theory. For multiple proton transfer processes, there are two types of mechanisms: stepwise transfer and concerted transfer. The Bell-Limbach model provides a simple theory to determine whether the proton transfer mechanism is stepwise or concerted from KIEs. Recent STM experiments have studied the proton switching process in water tetramers on NaCl(001). Theoretical studies predict that this process occurs via a concerted mechanism, however, the experimental KIEs resemble the Bell-Limbach model for stepwise tunneling, raising question on the underlying mechanism or the validity of the model. We study this system using ab initio instanton theory, and in addition to thermal rates, we also considered microcanonical rates, as well as tunneling splittings. Instanton theory predicts a concerted mechanism, and the KIEs for tunneling rates (both thermal and microcanonical) upon deuteration are consistent with the Bell-Limbach model for concerted tunneling, but could not explain the experiments. For tunneling splittings, partial and full deuteration changes the size of it in a similar fashion to how it changes the rates. We further examined the Bell-Limbach model in another system, porphycene, which has both stepwise and concerted tunneling pathways. The KIEs predicted by instanton theory are again consistent with the Bell-Limbach model. This study highlights differences between KIEs in stepwise and concerted tunneling, and the discrepancy between theory and recent STM experiments. New theory/experiments are desired to settle this problem.
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Affiliation(s)
| | | | - Wei Kang
- Center for Applied Physics and Technology, Peking University, China
| | | | - Wei Fang
- Dalian Institute of Chemical Physics, China
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6
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Abstract
The self-association of phosphonic acids with general formula RP(O)(OH)2 in solution state remains largely unexplored. The general understanding is that such molecules form multiple intermolecular hydrogen bonds, but the stoichiometry of self-associates and the bonding motifs are unclear. In this work, we report the results of the study of self-association of tert-butylphosphonic acid using low temperature liquid-state 1H and 31P NMR spectroscopy (100 K; CDF3/CDF2Cl) and density functional theory (DFT) calculations. For the first time, we demonstrate conclusively that polar aprotic medium tert-butylphosphonic acid forms highly symmetric cage-like tetramers held by eight OHO hydrogen bonds, which makes the complex quite stable. In these associates. each phosphonic acid molecule is bonded to three other molecules by forming two hydrogen bonds as proton donor and two hydrogen bonds as proton acceptor. Though the structure of such cage-like tetramers is close to tetrahedral, the formal symmetry of the self-associate is C2.
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7
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Litman Y, Rossi M. Multidimensional Hydrogen Tunneling in Supported Molecular Switches: The Role of Surface Interactions. PHYSICAL REVIEW LETTERS 2020; 125:216001. [PMID: 33275002 DOI: 10.1103/physrevlett.125.216001] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2020] [Accepted: 10/08/2020] [Indexed: 06/12/2023]
Abstract
The nuclear tunneling crossover temperature (T_{c}) of hydrogen transfer reactions in supported molecular-switch architectures can lie close to room temperature. This calls for the inclusion of nuclear quantum effects (NQEs) in the calculation of reaction rates even at high temperatures. However, computations of NQEs relying on standard parametrized dimensionality-reduced models quickly become inadequate in these environments. In this Letter, we study the paradigmatic molecular switch based on porphycene molecules adsorbed on metallic surfaces with full-dimensional calculations that combine density-functional theory for the electrons with the semiclassical ring-polymer instanton approximation for the nuclei. We show that the double intramolecular hydrogen transfer (DHT) rate can be enhanced by orders of magnitude due to surface fluctuations in the deep-tunneling regime. We also explain the origin of an Arrhenius temperature dependence of the rate below T_{c} and why this dependence differs at different surfaces. We propose a simple model to rationalize the temperature dependence of DHT rates spanning diverse fcc [110] surfaces.
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Affiliation(s)
- Yair Litman
- Fritz Haber Institute of the Max Planck Society, Faradayweg 4-6, 14195 Berlin, Germany and Institute for Chemistry and Biochemistry, Freie Universität Berlin, Arnimallee 22, 14195 Berlin, Germany
| | - Mariana Rossi
- Fritz Haber Institute of the Max Planck Society, Faradayweg 4-6, 14195 Berlin, Germany and MPI for the Structure and Dynamics of Matter, Luruper Chaussee 149, 22761 Hamburg, Germany
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Mulloyarova VV, Ustimchuk DO, Filarowski A, Tolstoy PM. H/D Isotope Effects on 1H-NMR Chemical Shifts in Cyclic Heterodimers and Heterotrimers of Phosphinic and Phosphoric Acids. Molecules 2020; 25:molecules25081907. [PMID: 32326122 PMCID: PMC7221807 DOI: 10.3390/molecules25081907] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2020] [Revised: 04/15/2020] [Accepted: 04/19/2020] [Indexed: 11/16/2022] Open
Abstract
Hydrogen-bonded heterocomplexes formed by POOH-containing acids (diphenylphosphoric 1, dimethylphosphoric 2, diphenylphosphinic 3, and dimethylphosphinic 4) are studied by the low-temperature (100 K) 1H-NMR and 31P-NMR using liquefied gases CDF3/CDF2Cl as a solvent. Formation of cyclic dimers and cyclic trimers consisting of molecules of two different acids is confirmed by the analysis of vicinal H/D isotope effects (changes in the bridging proton chemical shift, δH, after the deuteration of a neighboring H-bond). Acids 1 and 4 (or 1 and 3) form heterotrimers with very strong (short) H-bonds (δH ca. 17 ppm). While in the case of all heterotrimers the H-bonds are cyclically arranged head-to-tail, ···O=P-O-H···O=P-O-H···, and thus their cooperative coupling is expected, the signs of vicinal H/D isotope effects indicate an effective anticooperativity, presumably due to steric factors: when one of the H-bonds is elongated upon deuteration, the structure of the heterotrimer adjusts by shortening the neighboring hydrogen bonds. We also demonstrate the formation of cyclic tetramers: in the case of acids 1 and 4 the structure has alternating molecules of 1 and 4 in the cycle, while in case of acids 1 and 3 the cycle has two molecules of 1 followed by two molecules of 3.
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Affiliation(s)
- Valeriia V. Mulloyarova
- Institute of Chemistry, St. Petersburg State University, Universitetskij pr. 26, 198504 St. Petersburg, Russia; (V.V.M.); (D.O.U.)
| | - Daria O. Ustimchuk
- Institute of Chemistry, St. Petersburg State University, Universitetskij pr. 26, 198504 St. Petersburg, Russia; (V.V.M.); (D.O.U.)
| | - Aleksander Filarowski
- Faculty of Chemistry, University of Wrocław, 14 F. Joliot-Curie str., 50-383 Wrocław, Poland;
| | - Peter M. Tolstoy
- Institute of Chemistry, St. Petersburg State University, Universitetskij pr. 26, 198504 St. Petersburg, Russia; (V.V.M.); (D.O.U.)
- Correspondence: ; Tel.: +7-921-430-8191
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9
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Secrieru A, O’Neill PM, Cristiano MLS. Revisiting the Structure and Chemistry of 3(5)-Substituted Pyrazoles. Molecules 2019; 25:molecules25010042. [PMID: 31877672 PMCID: PMC6982847 DOI: 10.3390/molecules25010042] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2019] [Revised: 12/13/2019] [Accepted: 12/19/2019] [Indexed: 11/16/2022] Open
Abstract
Pyrazoles are known as versatile scaffolds in organic synthesis and medicinal chemistry, often used as starting materials for the preparation of more complex heterocyclic systems with relevance in the pharmaceutical field. Pyrazoles are also interesting compounds from a structural viewpoint, mainly because they exhibit tautomerism. This phenomenon may influence their reactivity, with possible impact on the synthetic strategies where pyrazoles take part, as well as on the biological activities of targets bearing a pyrazole moiety, since a change in structure translates into changes in properties. Investigations of the structure of pyrazoles that unravel the tautomeric and conformational preferences are therefore of upmost relevance. 3(5)-Aminopyrazoles are largely explored as precursors in the synthesis of condensed heterocyclic systems, namely pyrazolo[1,5-a]pyrimidines. However, the information available in the literature concerning the structure and chemistry of 3(5)-aminopyrazoles is scarce and disperse. We provide a revision of data on the present subject, based on investigations using theoretical and experimental methods, together with the applications of the compounds in synthesis. It is expected that the combined information will contribute to a deeper understanding of structure/reactivity relationships in this class of heterocycles, with a positive impact in the design of synthetic methods, where they take part.
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Affiliation(s)
- Alina Secrieru
- Center of Marine Sciences, CCMAR, Gambelas Campus, University of Algarve, UAlg, 8005-139 Faro, Portugal;
- Department of Chemistry, University of Liverpool, Liverpool L69 7ZD, UK;
- Department of Chemistry and Pharmacy, Faculty of Sciences and Technology, FCT, Gambelas Campus, University of Algarve, UAlg, 8005-139 Faro, Portugal
| | | | - Maria Lurdes Santos Cristiano
- Center of Marine Sciences, CCMAR, Gambelas Campus, University of Algarve, UAlg, 8005-139 Faro, Portugal;
- Department of Chemistry and Pharmacy, Faculty of Sciences and Technology, FCT, Gambelas Campus, University of Algarve, UAlg, 8005-139 Faro, Portugal
- Correspondence: ; Tel.: +351-289-800-953
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10
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Kumar S, Mondal D, Balakrishna MS. Diverse Architectures and Luminescence Properties of Group 11 Complexes Containing Pyrimidine-Based Phosphine, N-((Diphenylphosphine)methyl)pyrimidin-2-amine. ACS OMEGA 2018; 3:16601-16614. [PMID: 31458292 PMCID: PMC6643971 DOI: 10.1021/acsomega.8b02484] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/23/2018] [Accepted: 11/23/2018] [Indexed: 06/10/2023]
Abstract
In this article, the synthesis, structural studies, and luminescence properties of CuI, AgI, and AuI complexes of pyrimidine-based phosphine [C4H3N2-2-NH(CH2PPh2)] (1) are described. The reactions of 1 with CuX led to the isolation of one-dimensional (1D) chain, tetranuclear ladder, or cyclic derivatives. The structural features of these complexes are greatly influenced by the metal-to-ligand ratio, reaction conditions, and CuX (X = Cl, Br or I) employed. In the case of CuCl and CuBr, one-dimensional coordination polymers [{CuCl}{C4H3N2-2-NH(CH2PPh2)}]∞ (2) and [{CuBr}{C4H3N2-2-NH(CH2PPh2)}]∞ (3) were obtained, whereas CuI afforded tetracopper complex [{CuI}4{C4H3N2-2-NH(CH2PPh2)}2(NCCH3)2] (4) having Cu4 ladder structure supported by P∩N-bridging coordination of 1. The reaction of 1 with AgOTf yielded unprecedented one-dimensional chain structure [{AgOTf}{C4H3N2-2-NH(CH2PPh2)}]∞ (5), whereas the reaction with AgBF4 produced a 12-membered dinuclear complex, [{Ag}{C4H3N2-2-NH(CH2PPh2)}]2[BF4]2 (6), with each silver atom having a linear geometry. Gold complex [{AuCl}{C4H3N2-2-NH(CH2PPh2)}]2 (7) was synthesized by reacting 1 with [AuCl(SMe2)]. Compounds 2-4 were also prepared using a pestle and mortar by grinding method in almost quantitative yield. Complex 4 with a Cu···Cu distance of 2.828(5) Å shows high luminescence due to the nonbonded metal···metal interactions.
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11
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Mulloyarova VV, Giba IS, Kostin MA, Denisov GS, Shenderovich IG, Tolstoy PM. Cyclic trimers of phosphinic acids in polar aprotic solvent: symmetry, chirality and H/D isotope effects on NMR chemical shifts. Phys Chem Chem Phys 2018; 20:4901-4910. [PMID: 29384171 DOI: 10.1039/c7cp08130h] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
The hydrogen-bonded self-associates of dimethylphosphinic (1), diphenylphosphoric (2), phenylphosphinic (3), and bis(2,4,4-trimethylpentyl)phosphinic (4) acids have been studied by using liquid-state NMR down to 100 K in a low-freezing polar solvent, CDF3/CDClF2. The H/D isotope effects on 1H NMR chemical shifts caused by partial deuteration of hydroxyl groups unambiguously reveal the stoichiometry of the self-associates and the cooperativity of their hydrogen bonds. In all cases, cyclic trimers are the dominant form, while cyclic dimers are present as a minor form for 1 and 2. Due to the asymmetry of substituents, cyclic trimers of 3 exist in two isomeric forms, depending on the orientation of the phenyl groups with respect to the plane of the hydrogen bonds. The racemic mixture of 4 leads to the coexistence of up to 64 isomers of cyclic trimers, many of which are chemically equivalent or effectively isochronous. The mole fractions of such isomers deviate from the statistically expected values. This feature could provide information about the relative stabilization energies of hydrogen-bonded chiral self-associates. The complexation of 4 with SbCl5 (complex 5) suppresses the self-association and 5 exists exclusively in the monomeric form with chemically non-equivalent 31P nuclei in RS, SR and RR/SS forms.
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Affiliation(s)
- V V Mulloyarova
- Institute of Chemistry, St. Petersburg State University, Russia.
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12
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Fatollahpour M, Tahermansouri H. DFT study of the intramolecular double proton transfer of 2,5-diamino-1,4-benzoquinone and its derivatives, and investigations about their aromaticity. CR CHIM 2017. [DOI: 10.1016/j.crci.2017.06.001] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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13
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Koch M, Pagan M, Persson M, Gawinkowski S, Waluk J, Kumagai T. Direct Observation of Double Hydrogen Transfer via Quantum Tunneling in a Single Porphycene Molecule on a Ag(110) Surface. J Am Chem Soc 2017; 139:12681-12687. [DOI: 10.1021/jacs.7b06905] [Citation(s) in RCA: 43] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Affiliation(s)
- Matthias Koch
- Department
of Physical Chemistry, Fritz-Haber Institute of the Max-Planck Society, Faradayweg 4-6, Berlin 14195, Germany
| | - Mark Pagan
- Surface
Science Research Centre and Department of Chemistry, University of Liverpool, Liverpool L69 3BX, United Kingdom
| | - Mats Persson
- Surface
Science Research Centre and Department of Chemistry, University of Liverpool, Liverpool L69 3BX, United Kingdom
| | - Sylwester Gawinkowski
- Institute
of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, Warsaw 01-224, Poland
| | - Jacek Waluk
- Institute
of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, Warsaw 01-224, Poland
- Faculty
of Mathematics and Natural Sciences, College of Science, Cardinal Stefan Wyszyński University, Dewajtis 5, Warsaw 01-815, Poland
| | - Takashi Kumagai
- Department
of Physical Chemistry, Fritz-Haber Institute of the Max-Planck Society, Faradayweg 4-6, Berlin 14195, Germany
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14
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DRIDI RIHAB, CHERNI SAOUSSEN, ZID MOHAMEDFAOUZI. Synthesis, Crystal structure and Characterization of a New Oxalate Chromium (III) Complex. J CHEM SCI 2015. [DOI: 10.1007/s12039-015-0920-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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15
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Sardo M, Santos SM, Babaryk AA, López C, Alkorta I, Elguero J, Claramunt RM, Mafra L. Diazole-based powdered cocrystal featuring a helical hydrogen-bonded network: structure determination from PXRD, solid-state NMR and computer modeling. SOLID STATE NUCLEAR MAGNETIC RESONANCE 2015; 65:49-63. [PMID: 25604487 DOI: 10.1016/j.ssnmr.2014.12.005] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/06/2014] [Accepted: 12/07/2014] [Indexed: 06/04/2023]
Abstract
We present the structure of a new equimolar 1:1 cocrystal formed by 3,5-dimethyl-1H-pyrazole (dmpz) and 4,5-dimethyl-1H-imidazole (dmim), determined by means of powder X-ray diffraction data combined with solid-state NMR that provided insight into topological details of hydrogen bonding connectivities and weak interactions such as CH···π contacts. The use of various 1D/2D (13)C, (15)N and (1)H high-resolution solid-state NMR techniques provided structural insight on local length scales revealing internuclear proximities and relative orientations between the dmim and dmpz molecular building blocks of the studied cocrystal. Molecular modeling and DFT calculations were also employed to generate meaningful structures. DFT refinement was able to decrease the figure of merit R(F(2)) from ~11% (PXRD only) to 5.4%. An attempt was made to rationalize the role of NH···N and CH···π contacts in stabilizing the reported cocrystal. For this purpose four imidazole derivatives with distinct placement of methyl substituents were reacted with dmpz to understand the effect of methylation in blocking or enabling certain intermolecular contacts. Only one imidazole derivative (dmim) was able to incorporate into the dmpz trimeric motif thus resulting in a cocrystal, which contains both hydrophobic (methyl groups) and hydrophilic components that self-assemble to form an atypical 1D network of helicoidal hydrogen bonded pattern, featuring structural similarities with alpha-helix arrangements in proteins. The 1:1 dmpz···dmim compound I is the first example of a cocrystal formed by two different azoles.
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Affiliation(s)
- Mariana Sardo
- Department of Chemistry, CICECO, University of Aveiro, 3810-193 Aveiro, Portugal
| | - Sérgio M Santos
- Department of Chemistry, CICECO, University of Aveiro, 3810-193 Aveiro, Portugal
| | - Artem A Babaryk
- Department of Chemistry, CICECO, University of Aveiro, 3810-193 Aveiro, Portugal; Faculty of Chemistry, Taras Shevchenko National University of Kyiv, Volodymyrska s. 64/13, 01601 Kyiv, Ukraine
| | - Concepción López
- Departamento de Química Orgánica y Bio-Orgánica, Facultad de Ciencias, UNED, Senda del Rey 9, E-28040 Madrid, Spain
| | - Ibon Alkorta
- Instituto de Química Médica (CSIC), Juan de la Cierva 3, E-28006 Madrid, Spain
| | - José Elguero
- Instituto de Química Médica (CSIC), Juan de la Cierva 3, E-28006 Madrid, Spain
| | - Rosa M Claramunt
- Departamento de Química Orgánica y Bio-Orgánica, Facultad de Ciencias, UNED, Senda del Rey 9, E-28040 Madrid, Spain.
| | - Luís Mafra
- Department of Chemistry, CICECO, University of Aveiro, 3810-193 Aveiro, Portugal.
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16
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Shenderovich IG, Lesnichin SB, Tu C, Silverman DN, Tolstoy PM, Denisov GS, Limbach HH. NMR studies of active-site properties of human carbonic anhydrase II by using (15) N-labeled 4-methylimidazole as a local probe and histidine hydrogen-bond correlations. Chemistry 2014; 21:2915-29. [PMID: 25521423 DOI: 10.1002/chem.201404083] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2014] [Revised: 11/12/2014] [Indexed: 12/24/2022]
Abstract
By using a combination of liquid and solid-state NMR spectroscopy, (15) N-labeled 4-methylimidazole (4-MI) as a local probe of the environment has been studied: 1) in the polar, wet Freon CDF3 /CDF2 Cl down to 130 K, 2) in water at pH 12, and 3) in solid samples of the mutant H64A of human carbonic anhydrase II (HCA II). In the latter, the active-site His64 residue is replaced by alanine; the catalytic activity is, however, rescued by the presence of 4-MI. For the Freon solution, it is demonstrated that addition of water molecules not only catalyzes proton tautomerism but also lifts its quasidegeneracy. The possible hydrogen-bond clusters formed and the mechanism of the tautomerism are discussed. Information about the imidazole hydrogen-bond geometries is obtained by establishing a correlation between published (1) H and (15) N chemical shifts of the imidazole rings of histidines in proteins. This correlation is useful to distinguish histidines embedded in the interior of proteins and those at the surface, embedded in water. Moreover, evidence is obtained that the hydrogen-bond geometries of His64 in the active site of HCA II and of 4-MI in H64A HCA II are similar. Finally, the degeneracy of the rapid tautomerism of the neutral imidazole ring His64 reported by Shimahara et al. (J. Biol. Chem.- 2007, 282, 9646) can be explained with a wet, polar, nonaqueous active-site conformation in the inward conformation, similar to the properties of 4-MI in the Freon solution. The biological implications for the enzyme mechanism are discussed.
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Affiliation(s)
- Ilya G Shenderovich
- University of Regensburg, Universitätsstrasse 31, 93053 Regensburg (Germany).
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17
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Drechsel-Grau C, Marx D. Exceptional Isotopic-Substitution Effect: Breakdown of Collective Proton Tunneling in Hexagonal Ice due to Partial Deuteration. Angew Chem Int Ed Engl 2014. [DOI: 10.1002/ange.201405989] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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18
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Drechsel-Grau C, Marx D. Exceptional isotopic-substitution effect: breakdown of collective proton tunneling in hexagonal ice due to partial deuteration. Angew Chem Int Ed Engl 2014; 53:10937-40. [PMID: 25154597 DOI: 10.1002/anie.201405989] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2014] [Indexed: 11/09/2022]
Abstract
Multiple proton transfer controls many chemical reactions in hydrogen-bonded networks. However, in contrast to well-understood single proton transfer, the mechanisms of correlated proton transfer and of correlated proton tunneling in particular have remained largely elusive. Herein, fully quantized ab initio simulations are used to investigate H/D isotopic-substitution effects on the mechanism of the collective tunneling of six protons within proton-ordered cyclic water hexamers that are contained in proton-disordered ice, a prototypical hydrogen-bonded network. At the transition state, isotopic substitution leads to a Zundel-like complex, [HO⋅⋅⋅D⋅⋅⋅OH], which localizes ionic defects and thus inhibits perfectly correlated proton tunneling. These insights into fundamental aspects of collective proton tunneling not only rationalize recent neutron-scattering experiments, but also stimulate investigations into multiple proton transfer in hydrogen-bonded networks much beyond ice.
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19
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Quesada-Moreno MM, Avilés-Moreno JR, López-González JJ, Claramunt RM, López C, Alkorta I, Elguero J. Chiral self-assembly of enantiomerically pure (4S,7R)-campho[2,3-c]pyrazole in the solid state: a vibrational circular dichroism (VCD) and computational study. ACTA ACUST UNITED AC 2014. [DOI: 10.1016/j.tetasy.2014.02.015] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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20
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NAJAFI CHERMAHINI ALIREZA, TEIMOURI ABBAS. Theoretical studies on proton transfer reaction of 3(5)-substituted pyrazoles. J CHEM SCI 2014. [DOI: 10.1007/s12039-013-0569-5] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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21
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Sarcher C, Farsadpour S, Taghizadeh Ghoochany L, Sun Y, Thiel WR, Roesky PW. Gold(i) complexes with heteroaryl phosphine ligands. Dalton Trans 2014; 43:2397-405. [PMID: 24301091 DOI: 10.1039/c3dt52893f] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Affiliation(s)
- Christian Sarcher
- Institut für Anorganische Chemie, Karlsruher Institut für Technologie (KIT), Engesserstr. 15, Geb. 30.45, 76131 Karlsruhe, Germany.
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22
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MARFO-OWUSU E, THOMPSON A. The Molecular and Crystal Structure of 3,5-Dimethylpyrazole with Chloranilic Acid Adduct. X-RAY STRUCTURE ANALYSIS ONLINE 2014. [DOI: 10.2116/xraystruct.30.45] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Affiliation(s)
| | - Amber THOMPSON
- Chemical Crystallography, Department of Chemistry, Chemistry Research laboratory, University of Oxford
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23
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Abstract
Abstract
The structure of three simple pyrazole-4-carboxylic acids unsubstituted in position 1 (NH derivatives) 1H-pyrazole-4-carboxylic acid (1), 3(5)-methyl-1H-pyrazole-4-carboxylic acid (2) and 3,5-dimethyl-1H-pyrazole-4-carboxylic acid (3) are discussed based on crystallographic results (two new structures) and solid-state NMR (CPMAS). Compounds 1 and 3 present polymorphism and one of the polymorphs of each compound shows solid-state proton transfer (SSPT). Compound 2 presents tautomerism that has been studied by NMR, both in the solid-state and in solution at low temperature.
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25
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Chermahini AN, Teimouri A, Salimi Beni A, Dordahan F. Theoretical studies on the effect of substituent in the proton transfer reaction of 4-substituted pyrazoles. COMPUT THEOR CHEM 2013. [DOI: 10.1016/j.comptc.2012.12.021] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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26
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Ueda K, Oguni M. Quantum Tunneling in the Quadruple Proton Rearrangement on a Hydroxyl Hydrogen Bond Ring in Calix[4]arene. J Phys Chem B 2012; 116:14470-6. [DOI: 10.1021/jp304689z] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Kouhei Ueda
- Department of Chemistry, Graduate School of Science
and Engineering, Tokyo Institute of Technology, 2-12-1 O-okayama, Meguro-ku, Tokyo 152-8551, Japan
| | - Masaharu Oguni
- Department of Chemistry, Graduate School of Science
and Engineering, Tokyo Institute of Technology, 2-12-1 O-okayama, Meguro-ku, Tokyo 152-8551, Japan
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27
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Torres V, Lopez JM, Langer U, Buntkowsky G, Vieth HM, Elguero J, Limbach HH. Kinetics of Coupled Double Proton and Deuteron Transfer in Hydrogen-Bonded Ribbons of Crystalline Pyrazole-4-carboxylic Acid. ACTA ACUST UNITED AC 2012. [DOI: 10.1524/zpch.2012.0305] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
Abstract
The proton tautomerism of pyrazole-4-carboxylic acid (PCA) has been studied by a combination of 15N CPMAS and 2H NMR spectroscopy and relaxometry. Down to 250 K, PCA forms a hydrogen bonded ribbon where adjacent carboxylic and pyrazole groups are linked by an OH···N and an O···HN hydrogen bond, forming either the tautomeric state A or B. Down to about 250 K, the tautomerism is fast on the NMR timescale and degenerate, corresponding to a phase exhibiting dynamic proton disorder. At lower temperatures, a transition to an ordered phase is observed with localized protons, assigned to an all-syn conformation adopting the sequence of tautomeric states ..ABABA.. The longitudinal 15N relaxation times T
1 of PCA-15N2 have been measured at 9.12 MHz (2.1 T). Because of the low field, a chemical shift anisotropy mechanism could be neglected, and the data were analyzed in terms of a dipolar 1H-15N relaxation mechanism, yielding the rate constants k
HH. The rate constants k
HD and k
DD were obtained from the measurement and analysis of the 2H T
1 values of PCA-15N1-d0.9 and PCA-15N1-d0.1 measured at 46.03 MHz. Within the margin of error, no kinetic isotope effects could be detected, in contrast to previous results reported for the very fast tautomerism of solid benzoic acid dimers and the much slower tautomerism of solid 3,5-diphenyl-4-brompyrazole (DPBrP) dimers. The Arrhenius curves of all three systems were simulated using the Bell–Limbach tunneling model. Evidence for a major heavy atom motion for the tautomerism of PCA is obtained, associated with small angle reorientation of PCA molecules around the molecular axis. The observed proton order-disorder transition and the mechanism of the observed rate process are discussed in terms of a coupling of adjacent tautomeric states.
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Affiliation(s)
- Verónica Torres
- Freie Universität Berlin, Institut für Chemie und Biochemie, Berlin, Deutschland
| | - Juan-Miguel Lopez
- Freie Universität Berlin, Institut für Chemie und Biochemie, Berlin, Deutschland
| | - Uwe Langer
- Freie Universität Berlin, Institut für Chemie und Biochemie, Berlin, Deutschland
| | - Gerd Buntkowsky
- Technische Universität Darmstadt, Eduard-Zintl-Institut für Anorganische und, Darmstadt, Deutschland
| | - Hans-Martin Vieth
- Freie Universität Berlin, Institut für Experimentalphysik, Berlin, Deutschland
| | - José Elguero
- CSIC, Instituto de Quimica Medica, Madrid, Spanien
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Park SY, Kim Y, Lee JY, Jang DJ. Ground-State Proton Transport along a Blended-Alcohol Chain: Accelerated by Accumulated Proton-Donating Ability. J Phys Chem B 2012; 116:10915-21. [DOI: 10.1021/jp305769n] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Affiliation(s)
- Sun-Young Park
- School of Chemistry, Seoul National University, NS60, Seoul
151-742, Korea
| | - Yeonho Kim
- School of Chemistry, Seoul National University, NS60, Seoul
151-742, Korea
| | - Jin Yong Lee
- Department of Chemistry, Sungkyunkwan University, Suwon 440-746, Korea
| | - Du-Jeon Jang
- School of Chemistry, Seoul National University, NS60, Seoul
151-742, Korea
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29
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Bureiko SF, Kucherov SY. Structure of adducts of the intermolecular interaction of dimethylpyrazole and diphenylformamidine with hydrogen halides in the solution. J STRUCT CHEM+ 2012. [DOI: 10.1134/s0022476612020114] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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30
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Park SY, Jang DJ. Excited-state hydrogen relay along a blended-alcohol chain as a model system of a proton wire: deuterium effect on the reaction dynamics. Phys Chem Chem Phys 2012; 14:8885-91. [DOI: 10.1039/c2cp23615j] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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31
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Abstract
Abstract
Dispersed fluorescence (DF) spectra of jet-cooled indazole (Ia-h) and its singly-deuterated isotopologue (Ia-d) were recorded following excitation of the origin band of the S
1(1
A´) ← S
0(1
A´) electronic transition. The spectra were analyzed and assigned with the help of vibrational frequency calculations by density functional theory (DFT) at the TPSS/aug-cc-pVTZ level. The calculated and measured S
0 state vibrations are in agreement within ≤ 3%. The obtained results for the two Ia monomers form the basis for an analysis of the electronic spectra of the hydrogen-bonded dimers Ia2-hh, Ia2-dd and Ia2-hd and a determination of the exciton splitting in the dimer in a forthcoming paper.
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Affiliation(s)
- Hauke Nicken
- Christian-Albrechts-Universität zu Kiel, Institut für Physikalische Chemie, Kiel, Deutschland
| | | | - Erko Jalviste
- University of Tartu, Institute of Physics, Tartu, Estland
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32
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Reviriego F, Navarro P, Arán VJ, Jimeno ML, García-España E, Latorre J, Yunta MJR. Hydrogen-Bond-Mediated Self-Assembly of 26-Membered Diaza Tetraester Crowns of 3,5-Disubstituted 1H-Pyrazole. Dimerization Study in the Solid State and in CDCl3 Solution. J Org Chem 2011; 76:8223-31. [DOI: 10.1021/jo2012835] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Felipe Reviriego
- Instituto de Química Médica and Centro de Química Orgánica Lora-Tamayo CSIC, Juan de la Cierva 3, 28006 Madrid, Spain
| | - Pilar Navarro
- Instituto de Química Médica and Centro de Química Orgánica Lora-Tamayo CSIC, Juan de la Cierva 3, 28006 Madrid, Spain
| | - Vicente J. Arán
- Instituto de Química Médica and Centro de Química Orgánica Lora-Tamayo CSIC, Juan de la Cierva 3, 28006 Madrid, Spain
| | - Maria Luisa Jimeno
- Instituto de Química Médica and Centro de Química Orgánica Lora-Tamayo CSIC, Juan de la Cierva 3, 28006 Madrid, Spain
| | - Enrique García-España
- Departamento de Química Inorgánica, Instituto de Ciencia Molecular, Universidad de Valencia, Edificio de Institutos de Paterna, Profesor José Beltrán 2, 46980 Paterna (Valencia), Spain
| | - Julio Latorre
- Departamento de Química Inorgánica, Instituto de Ciencia Molecular, Universidad de Valencia, Edificio de Institutos de Paterna, Profesor José Beltrán 2, 46980 Paterna (Valencia), Spain
| | - Maria J. R. Yunta
- Departamento de Química Orgánica, Facultad de Química, Universidad Complutense de Madrid, Avda Complutense s/n, 28040 Madrid, Spain
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33
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Park SY, Jeong H, Jang DJ. Anomalously Slow Proton Transport of a Water Molecule. J Phys Chem B 2011; 115:6023-31. [DOI: 10.1021/jp112210x] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Affiliation(s)
- Sun-Young Park
- School of Chemistry, Seoul National University, NS60, Seoul 151-742, Korea
| | - Hyeok Jeong
- School of Chemistry, Seoul National University, NS60, Seoul 151-742, Korea
| | - Du-Jeon Jang
- School of Chemistry, Seoul National University, NS60, Seoul 151-742, Korea
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34
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Latosińska JN, Seliger J, Zagar V, Burchardt DV. A comparative study of the hydrogen-bonding patterns and prototropism in solid 2-thiocytosine (potential antileukemic agent) and cytosine, as studied by 1H-14N NQDR and QTAIM/ DFT. J Mol Model 2011; 18:11-26. [PMID: 21445709 PMCID: PMC3249547 DOI: 10.1007/s00894-011-1021-8] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2010] [Accepted: 02/13/2011] [Indexed: 02/03/2023]
Abstract
A potential antileukemic and anticancer agent, 2-thiocytosine (2-TC), has been studied experimentally in the solid state by 1H-14N NMR-NQR double resonance (NQDR) and theoretically by the quantum theory of atoms in molecules (QTAIM)/density functional theory (DFT). Eighteen resonance frequencies on 14N were detected at 180 K and assigned to particular nitrogen sites (−NH2, –N=, and –NH–) in 2-thiocytosine. Factors such as the nonequivalence of molecules (connected to the duplication of sites) and possible prototropic tautomerism (capable of modifying the type of site due to proton transfer) were taken into account during frequency assignment. The result of replacing oxygen with sulfur, which leads to changes in the intermolecular interaction pattern and molecular aggregation, is discussed. This study demonstrates the advantages of combining NQDR and DFT to extract detailed information on the H-bonding properties of crystals with complex H-bonding networks. Solid-state properties were found to have a profound impact on the stabilities and reactivities of both compounds. The experimental 1H-14N NQDR spectrum of 2-thiocytosine obtained at T = 180 K by the solid effect technique (left) and 3d distribution of the electron density Laplacian calculated by DFT (right) ![]()
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35
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Jozak T, Sun Y, Schmitt Y, Lebedkin S, Kappes M, Gerhards M, Thiel WR. New Hexanuclear Group 11 Pyrazolate Complexes: Synthesis and Photophysical Features. Chemistry 2011; 17:3384-9. [DOI: 10.1002/chem.201002894] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2010] [Indexed: 11/10/2022]
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36
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Cruz-Cabeza AJ, Groom CR. Identification, classification and relative stability of tautomers in the cambridge structural database. CrystEngComm 2011. [DOI: 10.1039/c0ce00123f] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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37
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Park SY, Lee YS, Jang DJ. Ground-state proton-transfer dynamics governed by configurational optimization. Phys Chem Chem Phys 2011; 13:3730-6. [DOI: 10.1039/c0cp01977a] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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38
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Hervé G, Roussel C, Graindorge H. Selective Preparation of 3,4,5-Trinitro-1H-Pyrazole: A Stable All-Carbon-Nitrated Arene. Angew Chem Int Ed Engl 2010; 49:3177-81. [DOI: 10.1002/anie.201000764] [Citation(s) in RCA: 164] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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39
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Hervé G, Roussel C, Graindorge H. Selective Preparation of 3,4,5-Trinitro-1H-Pyrazole: A Stable All-Carbon-Nitrated Arene. Angew Chem Int Ed Engl 2010. [DOI: 10.1002/ange.201000764] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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40
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Coles MP, Aragón-Sáez PJ, Oakley SH, Hitchcock PB, Davidson MG, Maksić ZB, Vianello R, Leito I, Kaljurand I, Apperley DC. Superbasicity of a bis-guanidino compound with a flexible linker: a theoretical and experimental study. J Am Chem Soc 2010; 131:16858-68. [PMID: 19874017 DOI: 10.1021/ja906618g] [Citation(s) in RCA: 71] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The bis-guanidino compound H(2)C{hpp}(2) (I; hppH = 1,3,4,6,7,8-hexahydro-2H-pyrimido[1,2-a]pyrimidine) has been converted to the monocation [I-H](+) and isolated as the chloride and tetraphenylborate salts. Solution-state spectroscopic data do not differentiate the protonated guanidinium from the neutral guanidino group but suggest intramolecular "-N-H...N=" hydrogen bonding to form an eight-membered C(3)N(4)H heterocycle. Solid-state CPMAS (15)N NMR spectroscopy confirms protonation at one of the imine nitrogens, although line broadening is consistent with solid-state proton transfer between guanidine functionalities. X-ray diffraction data have been recorded over the temperature range 50-273 K. Examination of the carbon-nitrogen bond lengths suggests a degree of "partial protonation" of the neutral guanidino group at higher temperatures, with greater localization of the proton at one nitrogen position as the temperature is lowered. Difference electron density maps generated from high-resolution X-ray diffraction studies at 110 K give the first direct experimental evidence for proton transfer in a poly(guanidino) system. Computational analysis of I and its conjugate acid [I-H](+) indicate strong cationic resonance stabilization of the guanidinium group, with the nonprotonated group also stabilized, albeit to a lesser extent. The maximum barrier to proton transfer calculated using the Boese-Martin for kinetics method was 2.8 kcal mol(-1), with hydrogen-bond compression evident in the transition state; addition of zero-point vibrational energy values leads to the conclusion that the proton transfer is barrierless, implying that the proton shuttles freely between the two nitrogen atoms. Calculations determining the gas-phase proton affinity and the pK(a) in acetonitrile both indicate that compound I should behave as a superbase. This has been confirmed by spectrophotometric titrations in MeCN using polyphosphazene references, which give an average pK(a) of 28.98 +/- 0.05. Triadic analysis indicates that the dominant term causing the high basicity is the relaxation energy.
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Affiliation(s)
- Martyn P Coles
- Department of Chemistry, University of Sussex, Falmer, Brighton BN1 9QJ, UK.
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41
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Horsewill AJ. How quantum tunnelling can contribute to proton transfer at biologically relevant temperatures. J PHYS ORG CHEM 2010. [DOI: 10.1002/poc.1640] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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42
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Pérez-Torralba M, López C, Pérez-Medina C, Claramunt RM, Pinilla E, Torres MR, Alkorta I, Elguero J. Fast degenerate double proton transfer in the solid state between two indazolinone tautomers. CrystEngComm 2010. [DOI: 10.1039/c0ce00249f] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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43
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Noble DL, Aibout A, Horsewill AJ. 1H-19F spin-lattice relaxation spectroscopy: proton tunnelling in the hydrogen bond studied by field-cycling NMR. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2009; 201:157-164. [PMID: 19783187 DOI: 10.1016/j.jmr.2009.09.001] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2009] [Revised: 08/24/2009] [Accepted: 09/02/2009] [Indexed: 05/28/2023]
Abstract
Proton tunnelling in the hydrogen bonds of two fluorine substituted benzoic acid dimers has been investigated using field-cycling NMR relaxometry. The close proximity of the (19)F nuclei to the hydrogen bond protons introduces heteronuclear (19)F-(1)H dipolar interactions into the spin-lattice relaxation processes. This renders the (1)H magnetisation-recovery biexponential and introduces multiple spectral density components into the relaxation matrix characterised by frequencies that are sums and differences of the (19)F and (1)H Larmor frequencies. Using field-cycling NMR pulse sequences that measure the spin-lattice relaxation and cross-relaxation rates we demonstrate how some of these multiple spectral density components can be separately resolved. This leads to an accurate determination of the correlation times that characterise the proton tunnelling motion. A broad spectrum of relaxation behaviour is illustrated and explored in the chosen samples and the investigation is used to explore the theory and practise of field-cycling NMR relaxometry in cases where heteronuclear interactions are significant.
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Affiliation(s)
- D L Noble
- School of Physics & Astronomy, University of Nottingham, University Park, Nottingham, England NG7 2RD, UK
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44
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Park SY, Kim B, Lee YS, Kwon OH, Jang DJ. Triple proton transfer of excited 7-hydroxyquinoline along a hydrogen-bonded water chain in ethers: secondary solvent effect on the reaction rate. Photochem Photobiol Sci 2009; 8:1611-7. [PMID: 19862421 DOI: 10.1039/b9pp00026g] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
A large secondary solvent effect on the reaction rate has been experimentally observed in the excited-state tautomerization of a 7-hydroxyquinoline (7HQ) molecule complexed cyclically with two water molecules in ethers. The proton acceptance of a water molecule from the enolic group of 7HQ is the rate-determining step while the proton donation of a water molecule to the imino group of 7HQ is followed rapidly to complete the triple proton transfer of the 7HQ.(H2O)2 complex in both diethyl ether and di-n-propyl ether. The rate constant of the tautomerization is larger in diethyl ether than in di-n-propyl ether due to the more polar environment around the complex in diethyl ether. Although the activation energies of the proton transfer are similar in both ethers, the kinetic isotope effect of the rate constant is larger in di-n-propyl ether than in diethyl ether. We attribute these kinetic differences to dissimilarity in the polarities of the two secondary solvents.
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Affiliation(s)
- Sun-Young Park
- School of Chemistry, Seoul National University, NS60, Seoul, 151-742, Korea
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45
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Smedarchina Z, Siebrand W, Fernandez-Ramos A, Meana-Paneda R. Mechanisms of Double Proton Transfer. Theory and Applications. ACTA ACUST UNITED AC 2009. [DOI: 10.1524/zpch.2008.5389] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
Abstract
An analytical two-dimensional (2D) potential-energy surface based on two equal hydrogen bonds coupled by a correlation term, recently introduced [J. Chem. Phys. 127 (2007) 174513] to describe the dynamics of double proton transfer, is reviewed and generalized. It is then applied to the evaluation of proton transfer dynamics in a number of realistic systems, namely several molecules and dimers that exhibit various degrees of correlation between the motions of the two protons. The three parameters required to generate this 2D potential are derived from electronic structure and force field calculations, such that they include implicitly the effect of coupled skeletal modes. It follows that explicit introduction of such coupled modes is not required to obtain the basic relations that define the stationary points of the 2D surface, and thereby the reaction mechanism. Based on these relations, a detailed analysis is reported of a variety of systems exhibiting double proton transfer, including, apart from previously investigated porphine and porphycene, representing weak correlation, and the formic and benzoic acid dimers, representing strong correlation, two newly investigated systems which shed light on the hitherto not represented intermediate correlation category, namely naphthazarin, and the 4-bromopyrazole dimer.
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46
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Structure and intermolecular interactions in complexes with hydrogen bond of a series of bifunctional nitrogen-containing compounds. J STRUCT CHEM+ 2009. [DOI: 10.1007/s10947-009-0109-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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47
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Reviriego F, Sanz A, Navarro P, Latorre J, García-España E, Liu-Gonzalez M. Self-assembly of 3,5-bis(ethoxycarbonyl)pyrazolate anions and ammonium cations of beta-phenylethylamine or homoveratrylamine into hetero-double-stranded helical structures. Org Biomol Chem 2009; 7:3212-4. [PMID: 19641775 DOI: 10.1039/b911053d] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Hydrogen-bonded double-stranded hetero-helices are formed when reacting sodium 3,5-bis(ethoxycarbonyl)pyrazolate with beta-phenethylammonium or homoveratrylammonium chloride, in which one of the strands is defined by the ammonium cations and the other one by the pyrazolate anions.
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Affiliation(s)
- Felipe Reviriego
- Instituto de Química Médica, Centro de Química Orgánica Manuel Lora-Tamayo, CSIC, Juan de la Cierva 3, 28006 Madrid, Spain.
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48
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Jozak T, Fischer M, Thiel J, Sun Y, Kelm H, Thiel WR. A Series of NovelN,N-Donor Ligands with Binaphthyl Backbones. European J Org Chem 2009. [DOI: 10.1002/ejoc.200801224] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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49
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Park SY, Lee YS, Kwon OH, Jang DJ. Proton transport of water in acid–base reactions of 7-hydroxyquinoline. Chem Commun (Camb) 2009:926-8. [DOI: 10.1039/b817698a] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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50
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Lopez del Amo JM, Langer U, Torres V, Pietrzak M, Buntkowsky G, Vieth HM, Shibl MF, Kühn O, Bröring M, Limbach HH. Isotope and Phase Effects on the Proton Tautomerism in Polycrystalline Porphycene Revealed by NMR. J Phys Chem A 2008; 113:2193-206. [DOI: 10.1021/jp8079414] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Juan Miguel Lopez del Amo
- Institut für Chemie und Biochemie, Takustrasse 3, Freie Universität Berlin, D-14195 Berlin, Germany, Institut für Physikalische Chemie der Friedrich-Schiller Universität, Helmholtzweg 4, D-07743 Jena, Germany, Fachbereich Physik, Freie Universität Berlin, Arnimallee 14, D-14195 Berlin, Germany, Fachbereich Chemie, Philipps Universität Marburg, Hans-Meerwein-Strasse, 35032 Marburg, Germany
| | - Uwe Langer
- Institut für Chemie und Biochemie, Takustrasse 3, Freie Universität Berlin, D-14195 Berlin, Germany, Institut für Physikalische Chemie der Friedrich-Schiller Universität, Helmholtzweg 4, D-07743 Jena, Germany, Fachbereich Physik, Freie Universität Berlin, Arnimallee 14, D-14195 Berlin, Germany, Fachbereich Chemie, Philipps Universität Marburg, Hans-Meerwein-Strasse, 35032 Marburg, Germany
| | - Verónica Torres
- Institut für Chemie und Biochemie, Takustrasse 3, Freie Universität Berlin, D-14195 Berlin, Germany, Institut für Physikalische Chemie der Friedrich-Schiller Universität, Helmholtzweg 4, D-07743 Jena, Germany, Fachbereich Physik, Freie Universität Berlin, Arnimallee 14, D-14195 Berlin, Germany, Fachbereich Chemie, Philipps Universität Marburg, Hans-Meerwein-Strasse, 35032 Marburg, Germany
| | - Mariusz Pietrzak
- Institut für Chemie und Biochemie, Takustrasse 3, Freie Universität Berlin, D-14195 Berlin, Germany, Institut für Physikalische Chemie der Friedrich-Schiller Universität, Helmholtzweg 4, D-07743 Jena, Germany, Fachbereich Physik, Freie Universität Berlin, Arnimallee 14, D-14195 Berlin, Germany, Fachbereich Chemie, Philipps Universität Marburg, Hans-Meerwein-Strasse, 35032 Marburg, Germany
| | - Gerd Buntkowsky
- Institut für Chemie und Biochemie, Takustrasse 3, Freie Universität Berlin, D-14195 Berlin, Germany, Institut für Physikalische Chemie der Friedrich-Schiller Universität, Helmholtzweg 4, D-07743 Jena, Germany, Fachbereich Physik, Freie Universität Berlin, Arnimallee 14, D-14195 Berlin, Germany, Fachbereich Chemie, Philipps Universität Marburg, Hans-Meerwein-Strasse, 35032 Marburg, Germany
| | - Hans-Martin Vieth
- Institut für Chemie und Biochemie, Takustrasse 3, Freie Universität Berlin, D-14195 Berlin, Germany, Institut für Physikalische Chemie der Friedrich-Schiller Universität, Helmholtzweg 4, D-07743 Jena, Germany, Fachbereich Physik, Freie Universität Berlin, Arnimallee 14, D-14195 Berlin, Germany, Fachbereich Chemie, Philipps Universität Marburg, Hans-Meerwein-Strasse, 35032 Marburg, Germany
| | - Mohamed F. Shibl
- Institut für Chemie und Biochemie, Takustrasse 3, Freie Universität Berlin, D-14195 Berlin, Germany, Institut für Physikalische Chemie der Friedrich-Schiller Universität, Helmholtzweg 4, D-07743 Jena, Germany, Fachbereich Physik, Freie Universität Berlin, Arnimallee 14, D-14195 Berlin, Germany, Fachbereich Chemie, Philipps Universität Marburg, Hans-Meerwein-Strasse, 35032 Marburg, Germany
| | - Oliver Kühn
- Institut für Chemie und Biochemie, Takustrasse 3, Freie Universität Berlin, D-14195 Berlin, Germany, Institut für Physikalische Chemie der Friedrich-Schiller Universität, Helmholtzweg 4, D-07743 Jena, Germany, Fachbereich Physik, Freie Universität Berlin, Arnimallee 14, D-14195 Berlin, Germany, Fachbereich Chemie, Philipps Universität Marburg, Hans-Meerwein-Strasse, 35032 Marburg, Germany
| | - Martin Bröring
- Institut für Chemie und Biochemie, Takustrasse 3, Freie Universität Berlin, D-14195 Berlin, Germany, Institut für Physikalische Chemie der Friedrich-Schiller Universität, Helmholtzweg 4, D-07743 Jena, Germany, Fachbereich Physik, Freie Universität Berlin, Arnimallee 14, D-14195 Berlin, Germany, Fachbereich Chemie, Philipps Universität Marburg, Hans-Meerwein-Strasse, 35032 Marburg, Germany
| | - Hans-Heinrich Limbach
- Institut für Chemie und Biochemie, Takustrasse 3, Freie Universität Berlin, D-14195 Berlin, Germany, Institut für Physikalische Chemie der Friedrich-Schiller Universität, Helmholtzweg 4, D-07743 Jena, Germany, Fachbereich Physik, Freie Universität Berlin, Arnimallee 14, D-14195 Berlin, Germany, Fachbereich Chemie, Philipps Universität Marburg, Hans-Meerwein-Strasse, 35032 Marburg, Germany
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